Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401510 | AES69762.1 | 98.425 | 127 | 2 | 0 | 1 | 127 | 1 | 127 | 6.62e-85 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401510 | sp|F4K657|BL1S2_ARATH | 67.593 | 108 | 35 | 0 | 14 | 121 | 5 | 112 | 3.85e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401510 | G7IZJ7 | 98.425 | 127 | 2 | 0 | 1 | 127 | 1 | 127 | 3.16e-85 | 253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0354660 | Msa0401510 | 0.840681 | 7.509664e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401510 | MtrunA17_Chr3g0090341 | 98.425 | 127 | 2 | 0 | 1 | 127 | 1 | 127 | 6.09e-89 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401510 | AT5G49550.1 | 67.593 | 108 | 35 | 0 | 14 | 121 | 5 | 112 | 3.91e-53 | 163 |
Find 82 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGTTTATACCGTTTATT+TGG | 0.152595 | 3_2:-27633347 | Msa0401510:three_prime_UTR |
| TCTCTCAATTTGTATCATTT+TGG | 0.188725 | 3_2:-27633370 | Msa0401510:three_prime_UTR |
| AAAGCATGTGTTATATAATA+AGG | 0.199456 | 3_2:-27632811 | Msa0401510:three_prime_UTR |
| GGGTTTGGCGATTTGGCTTC+AGG | 0.236775 | 3_2:-27633661 | Msa0401510:CDS |
| TGTAGAGCTTATCTTTGTTT+GGG | 0.271979 | 3_2:-27633007 | Msa0401510:three_prime_UTR |
| TTGTAGAGCTTATCTTTGTT+TGG | 0.276972 | 3_2:-27633008 | Msa0401510:three_prime_UTR |
| TTTGGAGAACCACTATATTA+AGG | 0.298073 | 3_2:-27632936 | Msa0401510:intron |
| GCACAAGGGTAGATTGAAAA+TGG | 0.302325 | 3_2:+27633043 | None:intergenic |
| GTATAACGGGTTTGGCGATT+TGG | 0.304459 | 3_2:-27633668 | Msa0401510:CDS |
| CGATTTGGCTTCAGGGTTAA+GGG | 0.313912 | 3_2:-27633653 | Msa0401510:CDS |
| GTTCATCACGCTTCTGATCC+TGG | 0.319473 | 3_2:+27633939 | None:intergenic |
| GCGATTTGGCTTCAGGGTTA+AGG | 0.320780 | 3_2:-27633654 | Msa0401510:CDS |
| CCCAACCTTTCCTTGTGAAT+TGG | 0.325145 | 3_2:-27634007 | Msa0401510:five_prime_UTR |
| TATAATAAGGGTCTGTTTGA+TGG | 0.331182 | 3_2:-27632798 | Msa0401510:three_prime_UTR |
| CAGTGTACAAATTGAGGAAA+TGG | 0.345104 | 3_2:-27633442 | Msa0401510:three_prime_UTR |
| TAATAATCATCTAGAGCTAT+TGG | 0.354512 | 3_2:-27633719 | Msa0401510:CDS |
| ACGATCTGGTCACAACAAAA+TGG | 0.370600 | 3_2:-27633277 | Msa0401510:three_prime_UTR |
| GAGAGAGATAAAGATGTTGC+AGG | 0.381843 | 3_2:+27633091 | None:intergenic |
| GTTAAAACACCTTAATATAG+TGG | 0.385737 | 3_2:+27632927 | None:intergenic |
| CCGGTTTATACCGTTTATTT+GGG | 0.386629 | 3_2:-27633346 | Msa0401510:three_prime_UTR |
| CATGATCAAATCAGAGCTTC+AGG | 0.388388 | 3_2:-27633876 | Msa0401510:intron |
| AGTCGATGCGGCCTCAATTA+CGG | 0.390839 | 3_2:+27633223 | None:intergenic |
| TAAGGGTCTGTTTGATGGTC+AGG | 0.396202 | 3_2:-27632793 | Msa0401510:three_prime_UTR |
| GTAAACATAAGGAGATGAAA+AGG | 0.418422 | 3_2:+27633067 | None:intergenic |
| TTCAGGGTTAAGGGTGTTTG+TGG | 0.420422 | 3_2:-27633644 | Msa0401510:CDS |
| TGATAAATATGTGGCTTTGT+TGG | 0.429542 | 3_2:-27633521 | Msa0401510:CDS |
| TTCAGTCACTTGCTTCTCAA+TGG | 0.438225 | 3_2:+27633567 | None:intergenic |
| TTCATCACGCTTCTGATCCT+GGG | 0.439268 | 3_2:+27633940 | None:intergenic |
| ATCTTTCTTTATATTAGCCA+TGG | 0.439568 | 3_2:+27633967 | None:intergenic |
| CCCAAATAAACGGTATAAAC+CGG | 0.443820 | 3_2:+27633346 | None:intergenic |
| AAGCATGTGTTATATAATAA+GGG | 0.445838 | 3_2:-27632810 | Msa0401510:three_prime_UTR |
| AATGGTCCGCGACCACGATC+TGG | 0.449640 | 3_2:-27633291 | Msa0401510:three_prime_UTR |
| TAAGTAAATTAGCAGGGTGC+AGG | 0.450218 | 3_2:+27633397 | None:intergenic |
| GCAGAAGAGTATAACGGGTT+TGG | 0.452290 | 3_2:-27633676 | Msa0401510:CDS |
| TTGAAAATGGAGTAAACATA+AGG | 0.455923 | 3_2:+27633056 | None:intergenic |
| GATAAAGTGTAATCCAAAAC+AGG | 0.461299 | 3_2:-27636778 | Msa0401510:intron |
| TTGGACCATAAAACAACTCT+TGG | 0.464466 | 3_2:-27634060 | Msa0401510:five_prime_UTR |
| TTCTTTATATTAGCCATGGT+TGG | 0.465048 | 3_2:+27633971 | None:intergenic |
| GAGTAGCAGAAGAGTATAAC+GGG | 0.470456 | 3_2:-27633681 | Msa0401510:CDS |
| ACCAATTCACAAGGAAAGGT+TGG | 0.471373 | 3_2:+27634006 | None:intergenic |
| GATGGTCAGGATAGAGAGGT+AGG | 0.473565 | 3_2:-27632780 | Msa0401510:three_prime_UTR |
| GGTTTGGCGATTTGGCTTCA+GGG | 0.476471 | 3_2:-27633660 | Msa0401510:CDS |
| CCAATTCACAAGGAAAGGTT+GGG | 0.479764 | 3_2:+27634007 | None:intergenic |
| CTCTTGGTTGATTGTCACCC+CGG | 0.481676 | 3_2:-27634044 | Msa0401510:five_prime_UTR |
| CTGAAGCTCTGATTTGATCA+TGG | 0.484440 | 3_2:+27633877 | None:intergenic |
| TGGGAGTAACTATGCAAGCC+GGG | 0.489139 | 3_2:+27634026 | None:intergenic |
| AGTGTACAAATTGAGGAAAT+GGG | 0.497614 | 3_2:-27633441 | Msa0401510:three_prime_UTR |
| ACAAAACAGTGTACAAATTG+AGG | 0.507538 | 3_2:-27633448 | Msa0401510:three_prime_UTR |
| TACACTTTATCTCATCATAA+CGG | 0.509931 | 3_2:+27636790 | None:intergenic |
| ATTGACCAATTCACAAGGAA+AGG | 0.520990 | 3_2:+27634002 | None:intergenic |
| AGCAGCAGATTTGAAAGTGA+AGG | 0.522508 | 3_2:+27636840 | None:intergenic |
| TCTGTCGTGGTCTTAAATAA+TGG | 0.523689 | 3_2:-27633309 | Msa0401510:three_prime_UTR |
| CTCTATGCTTGATAAATATG+TGG | 0.528398 | 3_2:-27633530 | Msa0401510:CDS |
| AGAGTAGCAGAAGAGTATAA+CGG | 0.529896 | 3_2:-27633682 | Msa0401510:CDS |
| AGTTTGAGAACCCAAATAAA+CGG | 0.531238 | 3_2:+27633336 | None:intergenic |
| AAGTAAATTAGCAGGGTGCA+GGG | 0.535934 | 3_2:+27633398 | None:intergenic |
| CTGCAACATGACCGTAATTG+AGG | 0.539059 | 3_2:-27633234 | Msa0401510:three_prime_UTR |
| TTGGGAGTAACTATGCAAGC+CGG | 0.542326 | 3_2:+27634025 | None:intergenic |
| TTGTGACCAGATCGTGGTCG+CGG | 0.546492 | 3_2:+27633285 | None:intergenic |
| TTATTTAAGACCACGACAGA+GGG | 0.557465 | 3_2:+27633312 | None:intergenic |
| TATAAAGAAAGATGAAGCCC+AGG | 0.573042 | 3_2:-27633957 | Msa0401510:CDS |
| AGAGAGATAAAGATGTTGCA+GGG | 0.575926 | 3_2:+27633092 | None:intergenic |
| GTTGATATTGCACAGAATTG+TGG | 0.578941 | 3_2:+27633171 | None:intergenic |
| GCTGAGTACTCTCTTCCTCA+AGG | 0.579129 | 3_2:+27636877 | None:intergenic |
| GTAGAGCTTATCTTTGTTTG+GGG | 0.589244 | 3_2:-27633006 | Msa0401510:three_prime_UTR |
| TCTCAAACTCCCCTCTGTCG+TGG | 0.589613 | 3_2:-27633322 | Msa0401510:three_prime_UTR |
| TACAAATTGAGGAAATGGGT+AGG | 0.589720 | 3_2:-27633437 | Msa0401510:three_prime_UTR |
| GTTTGATGGTCAGGATAGAG+AGG | 0.597434 | 3_2:-27632784 | Msa0401510:three_prime_UTR |
| TCAATTATATGCTCCAACCA+TGG | 0.606866 | 3_2:-27633984 | Msa0401510:exon |
| GGCCGCATCGACTGTAATTG+TGG | 0.607101 | 3_2:-27633213 | Msa0401510:three_prime_UTR |
| AGTGACTGAATTTGAAGCTG+TGG | 0.611769 | 3_2:-27633554 | Msa0401510:CDS |
| TGGTGGCAACACTACTGAAG+AGG | 0.616263 | 3_2:+27633897 | None:intergenic |
| TGAAAGTGAAGGCGAAGCAG+TGG | 0.631127 | 3_2:+27636851 | None:intergenic |
| ATTATTTAAGACCACGACAG+AGG | 0.636695 | 3_2:+27633311 | None:intergenic |
| AGTAAATTAGCAGGGTGCAG+GGG | 0.639599 | 3_2:+27633399 | None:intergenic |
| AGCAGTCACGGTAACAGATG+CGG | 0.646818 | 3_2:+27633132 | None:intergenic |
| GGGAGTAACTATGCAAGCCG+GGG | 0.674597 | 3_2:+27634027 | None:intergenic |
| AACCACAATTACAGTCGATG+CGG | 0.680235 | 3_2:+27633211 | None:intergenic |
| GAGCAATTGAAATGCAAGAG+TGG | 0.703600 | 3_2:-27633622 | Msa0401510:CDS |
| AAGCTCTGATTTGATCATGG+TGG | 0.703617 | 3_2:+27633880 | None:intergenic |
| ATATAATTGACCAATTCACA+AGG | 0.707148 | 3_2:+27633997 | None:intergenic |
| TATTTAAGACCACGACAGAG+GGG | 0.739792 | 3_2:+27633313 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAATTTAAAATATGAAAT+TGG | - | chr3_2:27633117-27633136 | Msa0401510:three_prime_UTR | 10.0% |
| !!! | TCATTTTTTCAAAATATTAT+CGG | - | chr3_2:27633363-27633382 | Msa0401510:three_prime_UTR | 10.0% |
| !!! | ATTATAAATTTTACCTGTTT+TGG | + | chr3_2:27632887-27632906 | None:intergenic | 15.0% |
| !! | AATTAAGCTAATAATTATCA+AGG | + | chr3_2:27632985-27633004 | None:intergenic | 15.0% |
| !!! | AATTTCTTTTTTCATTGATA+TGG | - | chr3_2:27633079-27633098 | Msa0401510:three_prime_UTR | 15.0% |
| !!! | TATTTTAAATTTCAACACAT+AGG | + | chr3_2:27633111-27633130 | None:intergenic | 15.0% |
| !! | TTAAAATATGAAATTGGTTA+AGG | - | chr3_2:27633123-27633142 | Msa0401510:three_prime_UTR | 15.0% |
| !!! | TTATCTTTTGTTATAGAAAT+AGG | - | chr3_2:27633505-27633524 | Msa0401510:CDS | 15.0% |
| !!! | ATGTATAATGATTAAGTTTT+TGG | - | chr3_2:27633720-27633739 | Msa0401510:CDS | 15.0% |
| !! | TTCAAAAATTTAATAGTAAG+TGG | - | chr3_2:27634306-27634325 | Msa0401510:intron | 15.0% |
| !!! | TAAAAGTATCAATAAAAATC+TGG | + | chr3_2:27634453-27634472 | None:intergenic | 15.0% |
| !!! | TATTTTGTTATAATTTGCAA+TGG | - | chr3_2:27635889-27635908 | Msa0401510:intron | 15.0% |
| !! | ACTTATTTAAGCTTATCAAA+TGG | - | chr3_2:27633160-27633179 | Msa0401510:three_prime_UTR | 20.0% |
| !! | CTTATGTTATAAAAATTCAC+CGG | - | chr3_2:27633564-27633583 | Msa0401510:CDS | 20.0% |
| !! | GTTTCTATGATAGATTTATA+TGG | - | chr3_2:27633755-27633774 | Msa0401510:intron | 20.0% |
| !! | ATACAAATTGTAAGATGTAT+AGG | - | chr3_2:27633826-27633845 | Msa0401510:intron | 20.0% |
| !! | TACAAATTGTAAGATGTATA+GGG | - | chr3_2:27633827-27633846 | Msa0401510:intron | 20.0% |
| !!! | CTAAGCAAAAATATTTTAAC+AGG | + | chr3_2:27634707-27634726 | None:intergenic | 20.0% |
| !!! | GTAGTTTTTTCAACTATTAT+CGG | - | chr3_2:27635124-27635143 | Msa0401510:intron | 20.0% |
| !! | AGAAACAACTTATATGTTTA+TGG | + | chr3_2:27635286-27635305 | None:intergenic | 20.0% |
| !! | CTTAAATTTAGATGACTAAA+CGG | - | chr3_2:27635326-27635345 | Msa0401510:intron | 20.0% |
| !! | TGAGAAGATTATATTAAGTT+AGG | - | chr3_2:27635508-27635527 | Msa0401510:intron | 20.0% |
| !! | GAGAAGATTATATTAAGTTA+GGG | - | chr3_2:27635509-27635528 | Msa0401510:intron | 20.0% |
| !!! | ATTTGAAATGTACAATTGTT+TGG | - | chr3_2:27635840-27635859 | Msa0401510:intron | 20.0% |
| !! | GAAAAATAAGTAAATTAGCA+GGG | + | chr3_2:27636261-27636280 | None:intergenic | 20.0% |
| !! | AGAAAAATAAGTAAATTAGC+AGG | + | chr3_2:27636262-27636281 | None:intergenic | 20.0% |
| !! | AAAGCATGTGTTATATAATA+AGG | - | chr3_2:27636838-27636857 | Msa0401510:five_prime_UTR | 20.0% |
| !! | AAGCATGTGTTATATAATAA+GGG | - | chr3_2:27636839-27636858 | Msa0401510:five_prime_UTR | 20.0% |
| ! | TACACTTTATCTCATCATAA+CGG | + | chr3_2:27632862-27632881 | None:intergenic | 25.0% |
| ! | AATGACCCTAAATTCAATTA+TGG | - | chr3_2:27633005-27633024 | Msa0401510:three_prime_UTR | 25.0% |
| ! | AAGCTCCATAATTGAATTTA+GGG | + | chr3_2:27633013-27633032 | None:intergenic | 25.0% |
| ! | TAAATAAGTGAATCCAAACA+GGG | + | chr3_2:27633149-27633168 | None:intergenic | 25.0% |
| ! | TTAAATAAGTGAATCCAAAC+AGG | + | chr3_2:27633150-27633169 | None:intergenic | 25.0% |
| !!! | AACTTATTTTCATAAGCTCT+TGG | - | chr3_2:27633234-27633253 | Msa0401510:three_prime_UTR | 25.0% |
| !!! | ACTTATTTTCATAAGCTCTT+GGG | - | chr3_2:27633235-27633254 | Msa0401510:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTTGAGATCAGTTG+TGG | - | chr3_2:27633660-27633679 | Msa0401510:CDS | 25.0% |
| ! | TGATAGATTTATATGGTGTT+AGG | - | chr3_2:27633762-27633781 | Msa0401510:intron | 25.0% |
| !! | GATAGATTTATATGGTGTTA+GGG | - | chr3_2:27633763-27633782 | Msa0401510:intron | 25.0% |
| ! | ATTTGTATTCAGATCTGAAA+AGG | + | chr3_2:27633814-27633833 | None:intergenic | 25.0% |
| ! | ACAAATTGTAAGATGTATAG+GGG | - | chr3_2:27633828-27633847 | Msa0401510:intron | 25.0% |
| !! | AAAGATATAGCAAGTTGTTT+TGG | + | chr3_2:27633997-27634016 | None:intergenic | 25.0% |
| !! | ACAGATGATTGATTCTAATA+CGG | + | chr3_2:27634069-27634088 | None:intergenic | 25.0% |
| ! | AAATCTGCTTATTGTTTGTT+TGG | + | chr3_2:27634375-27634394 | None:intergenic | 25.0% |
| !! | ATAAAAATCTGGTTTGCAAA+TGG | + | chr3_2:27634442-27634461 | None:intergenic | 25.0% |
| !!! | GATACTTTTAGTATTTGTTG+AGG | - | chr3_2:27634463-27634482 | Msa0401510:intron | 25.0% |
| !!! | TTTGTATTGGTTCTTGAATT+GGG | - | chr3_2:27634524-27634543 | Msa0401510:intron | 25.0% |
| !! | ATTAAACAGTCTAAAATACC+GGG | + | chr3_2:27634672-27634691 | None:intergenic | 25.0% |
| !! | CATTAAACAGTCTAAAATAC+CGG | + | chr3_2:27634673-27634692 | None:intergenic | 25.0% |
| !!! | TATTTTAACAGGCAATTATC+AGG | + | chr3_2:27634696-27634715 | None:intergenic | 25.0% |
| ! | TCTGAAAATCTATATGCTAA+TGG | - | chr3_2:27634902-27634921 | Msa0401510:intron | 25.0% |
| ! | TAAACATCACATATTACTAG+TGG | - | chr3_2:27635008-27635027 | Msa0401510:intron | 25.0% |
| ! | TTGTAATGTTGTAAAAGACT+TGG | - | chr3_2:27635192-27635211 | Msa0401510:intron | 25.0% |
| ! | TGTAATGTTGTAAAAGACTT+GGG | - | chr3_2:27635193-27635212 | Msa0401510:intron | 25.0% |
| ! | ACAACTTATATGTTTATGGA+CGG | + | chr3_2:27635282-27635301 | None:intergenic | 25.0% |
| ! | TAATACCAATCTCCAAAATA+AGG | - | chr3_2:27635465-27635484 | Msa0401510:intron | 25.0% |
| ! | TGTGAGCTTGTAATTATAAA+AGG | - | chr3_2:27635538-27635557 | Msa0401510:intron | 25.0% |
| ! | GTGAGCTTGTAATTATAAAA+GGG | - | chr3_2:27635539-27635558 | Msa0401510:intron | 25.0% |
| ! | ATATAATTGACCAATTCACA+AGG | + | chr3_2:27635655-27635674 | None:intergenic | 25.0% |
| ! | ATCTTTCTTTATATTAGCCA+TGG | + | chr3_2:27635685-27635704 | None:intergenic | 25.0% |
| !! | TAATAATCATCTAGAGCTAT+TGG | - | chr3_2:27635930-27635949 | Msa0401510:intron | 25.0% |
| !! | TCTCTCAATTTGTATCATTT+TGG | - | chr3_2:27636279-27636298 | Msa0401510:intron | 25.0% |
| !!! | AAAGTTTTAAATAGCAGTCA+CGG | + | chr3_2:27636532-27636551 | None:intergenic | 25.0% |
| ! | TTGAAAATGGAGTAAACATA+AGG | + | chr3_2:27636596-27636615 | None:intergenic | 25.0% |
| !! | TGAAAACTGAGTTTTACATA+GGG | + | chr3_2:27636690-27636709 | None:intergenic | 25.0% |
| !! | AAAACTCAGTTTTCAGTATT+TGG | - | chr3_2:27636695-27636714 | Msa0401510:intron | 25.0% |
| ! | GTTAAAACACCTTAATATAG+TGG | + | chr3_2:27636725-27636744 | None:intergenic | 25.0% |
| GATAAAGTGTAATCCAAAAC+AGG | - | chr3_2:27632871-27632890 | Msa0401510:three_prime_UTR | 30.0% | |
| TGAACACGAGATAAGAAAAA+AGG | + | chr3_2:27632930-27632949 | None:intergenic | 30.0% | |
| TTATCAAGGAAGTTGAAAAC+AGG | + | chr3_2:27632971-27632990 | None:intergenic | 30.0% | |
| CAAGCTCCATAATTGAATTT+AGG | + | chr3_2:27633014-27633033 | None:intergenic | 30.0% | |
| ! | ATGCCTTTAATCAAAAGTGT+CGG | + | chr3_2:27633273-27633292 | None:intergenic | 30.0% |
| !! | CTTTTGATTAAAGGCATGTT+TGG | - | chr3_2:27633276-27633295 | Msa0401510:three_prime_UTR | 30.0% |
| ATGTCAATCACTACACATAT+CGG | + | chr3_2:27633305-27633324 | None:intergenic | 30.0% | |
| ACAATCGTCATTATTAAGAC+CGG | + | chr3_2:27633586-27633605 | None:intergenic | 30.0% | |
| ATCTATCTCGTTAACAATGT+TGG | + | chr3_2:27633630-27633649 | None:intergenic | 30.0% | |
| ! | ATTTATATGGTGTTAGGGTT+AGG | - | chr3_2:27633768-27633787 | Msa0401510:intron | 30.0% |
| CAAATTGTAAGATGTATAGG+GGG | - | chr3_2:27633829-27633848 | Msa0401510:intron | 30.0% | |
| AAATTGTAAGATGTATAGGG+GGG | - | chr3_2:27633830-27633849 | Msa0401510:intron | 30.0% | |
| GTATTAGAATCAATCATCTG+TGG | - | chr3_2:27634068-27634087 | Msa0401510:intron | 30.0% | |
| !! | TTCCTCTTATTTCTGTTCAT+TGG | - | chr3_2:27634259-27634278 | Msa0401510:intron | 30.0% |
| TACCAATGAACAGAAATAAG+AGG | + | chr3_2:27634264-27634283 | None:intergenic | 30.0% | |
| ! | GTTTTTCTTCAAGAAATGGA+TGG | + | chr3_2:27634348-27634367 | None:intergenic | 30.0% |
| ! | CACAGTTTTTCTTCAAGAAA+TGG | + | chr3_2:27634352-27634371 | None:intergenic | 30.0% |
| TTGAGGAAATAGAAAAACCA+AGG | - | chr3_2:27634480-27634499 | Msa0401510:intron | 30.0% | |
| !! | GTTTTGGATTTGCTTTGTAT+TGG | - | chr3_2:27634511-27634530 | Msa0401510:intron | 30.0% |
| !! | CTTTGTATTGGTTCTTGAAT+TGG | - | chr3_2:27634523-27634542 | Msa0401510:intron | 30.0% |
| GTATTATACACAATGATGAG+AGG | - | chr3_2:27634583-27634602 | Msa0401510:intron | 30.0% | |
| ! | GGTCATTCTGCATATTATTT+TGG | - | chr3_2:27634604-27634623 | Msa0401510:intron | 30.0% |
| ! | TGTAATTGTGATAGTGACAT+TGG | + | chr3_2:27634964-27634983 | None:intergenic | 30.0% |
| GTAATGTTGTAAAAGACTTG+GGG | - | chr3_2:27635194-27635213 | Msa0401510:intron | 30.0% | |
| TAATGTTGTAAAAGACTTGG+GGG | - | chr3_2:27635195-27635214 | Msa0401510:intron | 30.0% | |
| AATTTAGATGACTAAACGGA+AGG | - | chr3_2:27635330-27635349 | Msa0401510:intron | 30.0% | |
| !!! | CTTATTTTGGAGATTGGTAT+TGG | + | chr3_2:27635388-27635407 | None:intergenic | 30.0% |
| CAATACCAATCTCCAAAATA+AGG | - | chr3_2:27635386-27635405 | Msa0401510:intron | 30.0% | |
| !!! | AATCTCCTTATTTTGGAGAT+TGG | + | chr3_2:27635394-27635413 | None:intergenic | 30.0% |
| !! | ATGTGTGAATCTCCTTATTT+TGG | + | chr3_2:27635401-27635420 | None:intergenic | 30.0% |
| TGAAATTTACCGCATAATGT+TGG | - | chr3_2:27635438-27635457 | Msa0401510:intron | 30.0% | |
| TATTAGAGACCAACATTATG+CGG | + | chr3_2:27635450-27635469 | None:intergenic | 30.0% | |
| !!! | AATCTCCTTATTTTGGAGAT+TGG | + | chr3_2:27635394-27635413 | None:intergenic | 30.0% |
| !! | ATGTGTGAATCTCCTTATTT+TGG | + | chr3_2:27635401-27635420 | None:intergenic | 30.0% |
| !! | ATCAACCAAGAGTTGTTTTA+TGG | + | chr3_2:27635597-27635616 | None:intergenic | 30.0% |
| TTCTTTATATTAGCCATGGT+TGG | + | chr3_2:27635681-27635700 | None:intergenic | 30.0% | |
| CTCTATGCTTGATAAATATG+TGG | - | chr3_2:27636119-27636138 | Msa0401510:intron | 30.0% | |
| !! | TGATAAATATGTGGCTTTGT+TGG | - | chr3_2:27636128-27636147 | Msa0401510:intron | 30.0% |
| !! | TAATCAGGAAGATGGATTTT+TGG | + | chr3_2:27636181-27636200 | None:intergenic | 30.0% |
| !! | TGTTTTGTTAATCAGGAAGA+TGG | + | chr3_2:27636189-27636208 | None:intergenic | 30.0% |
| !! | TGTACACTGTTTTGTTAATC+AGG | + | chr3_2:27636196-27636215 | None:intergenic | 30.0% |
| ACAAAACAGTGTACAAATTG+AGG | - | chr3_2:27636201-27636220 | Msa0401510:intron | 30.0% | |
| AGTGTACAAATTGAGGAAAT+GGG | - | chr3_2:27636208-27636227 | Msa0401510:intron | 30.0% | |
| !! | CAATTTGTATCATTTTGGTC+CGG | - | chr3_2:27636284-27636303 | Msa0401510:intron | 30.0% |
| AGTTTGAGAACCCAAATAAA+CGG | + | chr3_2:27636316-27636335 | None:intergenic | 30.0% | |
| GTAAACATAAGGAGATGAAA+AGG | + | chr3_2:27636585-27636604 | None:intergenic | 30.0% | |
| AACAGCAAAAATAAGCACAA+GGG | + | chr3_2:27636623-27636642 | None:intergenic | 30.0% | |
| TTGTAGAGCTTATCTTTGTT+TGG | - | chr3_2:27636641-27636660 | Msa0401510:intron | 30.0% | |
| ! | TGTAGAGCTTATCTTTGTTT+GGG | - | chr3_2:27636642-27636661 | Msa0401510:intron | 30.0% |
| ! | GAAAACTGAGTTTTACATAG+GGG | + | chr3_2:27636689-27636708 | None:intergenic | 30.0% |
| ! | CTGAAAACTGAGTTTTACAT+AGG | + | chr3_2:27636691-27636710 | None:intergenic | 30.0% |
| TTTGGAGAACCACTATATTA+AGG | - | chr3_2:27636713-27636732 | Msa0401510:intron | 30.0% | |
| TATAATAAGGGTCTGTTTGA+TGG | - | chr3_2:27636851-27636870 | Msa0401510:five_prime_UTR | 30.0% | |
| ! | ATGACGATTGTTATTGAAGC+TGG | - | chr3_2:27633595-27633614 | Msa0401510:CDS | 35.0% |
| GTTAACAATGTTGGACATCT+CGG | + | chr3_2:27633621-27633640 | None:intergenic | 35.0% | |
| CATTGTTAACGAGATAGATG+TGG | - | chr3_2:27633631-27633650 | Msa0401510:CDS | 35.0% | |
| !!! | TTGTCCTAGTTCCAGTTTTT+TGG | - | chr3_2:27633966-27633985 | Msa0401510:CDS | 35.0% |
| TTTAATAGTAAGTGGCAGAG+TGG | - | chr3_2:27634314-27634333 | Msa0401510:intron | 35.0% | |
| AGTGAGAAACATATCCTTGA+TGG | - | chr3_2:27634411-27634430 | Msa0401510:intron | 35.0% | |
| GTGAGAAACATATCCTTGAT+GGG | - | chr3_2:27634412-27634431 | Msa0401510:intron | 35.0% | |
| ! | AACCAAGGATGAGATTGTTT+TGG | - | chr3_2:27634495-27634514 | Msa0401510:intron | 35.0% |
| ATCCAAAACAATCTCATCCT+TGG | + | chr3_2:27634500-27634519 | None:intergenic | 35.0% | |
| !! | ATAGTGGGGAGATTTTTGAA+AGG | - | chr3_2:27634561-27634580 | Msa0401510:intron | 35.0% |
| ! | ATTTTTGCTTAGAACCCACT+TGG | - | chr3_2:27634715-27634734 | Msa0401510:intron | 35.0% |
| ! | TTTTTGCTTAGAACCCACTT+GGG | - | chr3_2:27634716-27634735 | Msa0401510:intron | 35.0% |
| GTCACTGTTTATGTAGCAAT+CGG | - | chr3_2:27635030-27635049 | Msa0401510:intron | 35.0% | |
| TGTTTGTGTCAGTGTTTCAT+AGG | - | chr3_2:27635167-27635186 | Msa0401510:intron | 35.0% | |
| TTATATGTTTATGGACGGAG+GGG | + | chr3_2:27635277-27635296 | None:intergenic | 35.0% | |
| CTTATATGTTTATGGACGGA+GGG | + | chr3_2:27635278-27635297 | None:intergenic | 35.0% | |
| ACTTATATGTTTATGGACGG+AGG | + | chr3_2:27635279-27635298 | None:intergenic | 35.0% | |
| TGGAATTTACCGCATAATGT+TGG | - | chr3_2:27635359-27635378 | Msa0401510:intron | 35.0% | |
| TATTGGAGACCAACATTATG+CGG | + | chr3_2:27635371-27635390 | None:intergenic | 35.0% | |
| AAGGAGATTCACACATCTAA+CGG | - | chr3_2:27635405-27635424 | Msa0401510:intron | 35.0% | |
| !! | TTTTTCAAACAACTGCAGCT+TGG | - | chr3_2:27635570-27635589 | Msa0401510:intron | 35.0% |
| TTGGACCATAAAACAACTCT+TGG | - | chr3_2:27635589-27635608 | Msa0401510:intron | 35.0% | |
| ATTGACCAATTCACAAGGAA+AGG | + | chr3_2:27635650-27635669 | None:intergenic | 35.0% | |
| TCAATTATATGCTCCAACCA+TGG | - | chr3_2:27635665-27635684 | Msa0401510:intron | 35.0% | |
| TATAAAGAAAGATGAAGCCC+AGG | - | chr3_2:27635692-27635711 | Msa0401510:intron | 35.0% | |
| TAGAGGGTTAGAGAAAGAAT+GGG | + | chr3_2:27635807-27635826 | None:intergenic | 35.0% | |
| ! | AGAGTAGCAGAAGAGTATAA+CGG | - | chr3_2:27635967-27635986 | Msa0401510:intron | 35.0% |
| !!! | TTTTGGTTTGGTACTGAGAT+TGG | + | chr3_2:27636164-27636183 | None:intergenic | 35.0% |
| !!! | AGGAAGATGGATTTTTGGTT+TGG | + | chr3_2:27636176-27636195 | None:intergenic | 35.0% |
| CAGTGTACAAATTGAGGAAA+TGG | - | chr3_2:27636207-27636226 | Msa0401510:intron | 35.0% | |
| TACAAATTGAGGAAATGGGT+AGG | - | chr3_2:27636212-27636231 | Msa0401510:intron | 35.0% | |
| TCCGGTTTATACCGTTTATT+TGG | - | chr3_2:27636302-27636321 | Msa0401510:intron | 35.0% | |
| CCCAAATAAACGGTATAAAC+CGG | + | chr3_2:27636306-27636325 | None:intergenic | 35.0% | |
| CCGGTTTATACCGTTTATTT+GGG | - | chr3_2:27636303-27636322 | Msa0401510:intron | 35.0% | |
| ! | TTATTTAAGACCACGACAGA+GGG | + | chr3_2:27636340-27636359 | None:intergenic | 35.0% |
| ! | ATTATTTAAGACCACGACAG+AGG | + | chr3_2:27636341-27636360 | None:intergenic | 35.0% |
| ! | TCTGTCGTGGTCTTAAATAA+TGG | - | chr3_2:27636340-27636359 | Msa0401510:intron | 35.0% |
| GTTGATATTGCACAGAATTG+TGG | + | chr3_2:27636481-27636500 | None:intergenic | 35.0% | |
| AGAGAGATAAAGATGTTGCA+GGG | + | chr3_2:27636560-27636579 | None:intergenic | 35.0% | |
| CAACAGCAAAAATAAGCACA+AGG | + | chr3_2:27636624-27636643 | None:intergenic | 35.0% | |
| ! | GTAGAGCTTATCTTTGTTTG+GGG | - | chr3_2:27636643-27636662 | Msa0401510:intron | 35.0% |
| AGCAGCAGATTTGAAAGTGA+AGG | + | chr3_2:27632812-27632831 | None:intergenic | 40.0% | |
| AAATTGGTTAAGGCCCTGTT+TGG | - | chr3_2:27633133-27633152 | Msa0401510:three_prime_UTR | 40.0% | |
| !! | AATCAAAAGTGTCGGTGCTT+CGG | + | chr3_2:27633265-27633284 | None:intergenic | 40.0% |
| !! | GCACCGACACTTTTGATTAA+AGG | - | chr3_2:27633267-27633286 | Msa0401510:three_prime_UTR | 40.0% |
| GTGGAAATATTTGTCTGCTG+AGG | - | chr3_2:27633679-27633698 | Msa0401510:CDS | 40.0% | |
| !!! | CTAGTTCCAGTTTTTTGGCT+GGG | - | chr3_2:27633971-27633990 | Msa0401510:exon | 40.0% |
| AGTTATCATGCTTTAGCACC+CGG | - | chr3_2:27634651-27634670 | Msa0401510:intron | 40.0% | |
| ! | ATTCTCCCTGGTGCTAATTT+CGG | - | chr3_2:27634799-27634818 | Msa0401510:intron | 40.0% |
| AAACAAGCGTGCTATCTTGT+TGG | - | chr3_2:27634932-27634951 | Msa0401510:intron | 40.0% | |
| CTTCTGATTGAAGATGTGTC+CGG | - | chr3_2:27635055-27635074 | Msa0401510:intron | 40.0% | |
| GACTAAACGGAAGGAAAACA+TGG | - | chr3_2:27635339-27635358 | Msa0401510:intron | 40.0% | |
| AGATTCACACATCTAACGGA+AGG | - | chr3_2:27635409-27635428 | Msa0401510:intron | 40.0% | |
| CCAATTCACAAGGAAAGGTT+GGG | + | chr3_2:27635645-27635664 | None:intergenic | 40.0% | |
| ACCAATTCACAAGGAAAGGT+TGG | + | chr3_2:27635646-27635665 | None:intergenic | 40.0% | |
| ! | AAGCTCTGATTTGATCATGG+TGG | + | chr3_2:27635772-27635791 | None:intergenic | 40.0% |
| ! | CTGAAGCTCTGATTTGATCA+TGG | + | chr3_2:27635775-27635794 | None:intergenic | 40.0% |
| CATGATCAAATCAGAGCTTC+AGG | - | chr3_2:27635773-27635792 | Msa0401510:intron | 40.0% | |
| AGAGGGTTAGAGAAAGAATG+GGG | + | chr3_2:27635806-27635825 | None:intergenic | 40.0% | |
| GTAGAGGGTTAGAGAAAGAA+TGG | + | chr3_2:27635808-27635827 | None:intergenic | 40.0% | |
| AATCGTCAAGTGTCTGTAGA+GGG | + | chr3_2:27635823-27635842 | None:intergenic | 40.0% | |
| AAATCGTCAAGTGTCTGTAG+AGG | + | chr3_2:27635824-27635843 | None:intergenic | 40.0% | |
| ! | GAGTAGCAGAAGAGTATAAC+GGG | - | chr3_2:27635968-27635987 | Msa0401510:intron | 40.0% |
| GAGCAATTGAAATGCAAGAG+TGG | - | chr3_2:27636027-27636046 | Msa0401510:intron | 40.0% | |
| TTCAGTCACTTGCTTCTCAA+TGG | + | chr3_2:27636085-27636104 | None:intergenic | 40.0% | |
| ! | AGTGACTGAATTTGAAGCTG+TGG | - | chr3_2:27636095-27636114 | Msa0401510:intron | 40.0% |
| AAGTAAATTAGCAGGGTGCA+GGG | + | chr3_2:27636254-27636273 | None:intergenic | 40.0% | |
| TAAGTAAATTAGCAGGGTGC+AGG | + | chr3_2:27636255-27636274 | None:intergenic | 40.0% | |
| ! | TATTTAAGACCACGACAGAG+GGG | + | chr3_2:27636339-27636358 | None:intergenic | 40.0% |
| !! | ATTTTGTTGTGACCAGATCG+TGG | + | chr3_2:27636373-27636392 | None:intergenic | 40.0% |
| ACGATCTGGTCACAACAAAA+TGG | - | chr3_2:27636372-27636391 | Msa0401510:intron | 40.0% | |
| AACCACAATTACAGTCGATG+CGG | + | chr3_2:27636441-27636460 | None:intergenic | 40.0% | |
| GAGAGAGATAAAGATGTTGC+AGG | + | chr3_2:27636561-27636580 | None:intergenic | 40.0% | |
| GCACAAGGGTAGATTGAAAA+TGG | + | chr3_2:27636609-27636628 | None:intergenic | 40.0% | |
| !! | AGTTTTACATAGGGGTTGGT+TGG | + | chr3_2:27636681-27636700 | None:intergenic | 40.0% |
| ! | ACTGAGTTTTACATAGGGGT+TGG | + | chr3_2:27636685-27636704 | None:intergenic | 40.0% |
| CATTGACACCAAACACGACA+CGG | + | chr3_2:27633406-27633425 | None:intergenic | 45.0% | |
| TGTCAGTGCTTCATTGCTCT+TGG | - | chr3_2:27633430-27633449 | Msa0401510:three_prime_UTR | 45.0% | |
| CCAGCCAAAAAACTGGAACT+AGG | + | chr3_2:27633973-27633992 | None:intergenic | 45.0% | |
| !!! | CCTAGTTCCAGTTTTTTGGC+TGG | - | chr3_2:27633970-27633989 | Msa0401510:exon | 45.0% |
| ! | TTTTGGCCCAGCCAAAAAAC+TGG | + | chr3_2:27633980-27633999 | None:intergenic | 45.0% |
| TGCAAATGGAGAACCCATCA+AGG | + | chr3_2:27634428-27634447 | None:intergenic | 45.0% | |
| ! | GTAGTGCTTGCTAGCATAGT+GGG | - | chr3_2:27634546-27634565 | Msa0401510:intron | 45.0% |
| ! | TAGTGCTTGCTAGCATAGTG+GGG | - | chr3_2:27634547-27634566 | Msa0401510:intron | 45.0% |
| !! | TTGGCCTAGTGTTGTTTGCT+TGG | - | chr3_2:27634739-27634758 | Msa0401510:intron | 45.0% |
| !! | TGGCCTAGTGTTGTTTGCTT+GGG | - | chr3_2:27634740-27634759 | Msa0401510:intron | 45.0% |
| ! | CTTGAGAAGAGCACACTCTA+AGG | + | chr3_2:27634767-27634786 | None:intergenic | 45.0% |
| CTTAGAGTGTGCTCTTCTCA+AGG | - | chr3_2:27634765-27634784 | Msa0401510:intron | 45.0% | |
| TGTGCTCTTCTCAAGGTTTC+AGG | - | chr3_2:27634772-27634791 | Msa0401510:intron | 45.0% | |
| GTTGTGTGTTAGTGTCGTGT+TGG | + | chr3_2:27635090-27635109 | None:intergenic | 45.0% | |
| TGTTGTAAAAGACTTGGGGG+AGG | - | chr3_2:27635198-27635217 | Msa0401510:intron | 45.0% | |
| TTGGGAGTAACTATGCAAGC+CGG | + | chr3_2:27635627-27635646 | None:intergenic | 45.0% | |
| CCCAACCTTTCCTTGTGAAT+TGG | - | chr3_2:27635642-27635661 | Msa0401510:intron | 45.0% | |
| TTCATCACGCTTCTGATCCT+GGG | + | chr3_2:27635712-27635731 | None:intergenic | 45.0% | |
| TTGCAATGGTTGTGTGTGTC+AGG | - | chr3_2:27635903-27635922 | Msa0401510:intron | 45.0% | |
| TGCAATGGTTGTGTGTGTCA+GGG | - | chr3_2:27635904-27635923 | Msa0401510:intron | 45.0% | |
| !! | GCAGAAGAGTATAACGGGTT+TGG | - | chr3_2:27635973-27635992 | Msa0401510:intron | 45.0% |
| !! | GTATAACGGGTTTGGCGATT+TGG | - | chr3_2:27635981-27636000 | Msa0401510:intron | 45.0% |
| ! | CGATTTGGCTTCAGGGTTAA+GGG | - | chr3_2:27635996-27636015 | Msa0401510:intron | 45.0% |
| !! | TTCAGGGTTAAGGGTGTTTG+TGG | - | chr3_2:27636005-27636024 | Msa0401510:intron | 45.0% |
| AGTAAATTAGCAGGGTGCAG+GGG | + | chr3_2:27636253-27636272 | None:intergenic | 45.0% | |
| CTGCAACATGACCGTAATTG+AGG | - | chr3_2:27636415-27636434 | Msa0401510:intron | 45.0% | |
| ! | TAAGGGTCTGTTTGATGGTC+AGG | - | chr3_2:27636856-27636875 | Msa0401510:five_prime_UTR | 45.0% |
| ! | GTTTGATGGTCAGGATAGAG+AGG | - | chr3_2:27636865-27636884 | Msa0401510:five_prime_UTR | 45.0% |
| TGAAAGTGAAGGCGAAGCAG+TGG | + | chr3_2:27632801-27632820 | None:intergenic | 50.0% | |
| TTTGTCTGCTGAGGCAGTAG+TGG | - | chr3_2:27633688-27633707 | Msa0401510:CDS | 50.0% | |
| ! | GGTAGTGCTTGCTAGCATAG+TGG | - | chr3_2:27634545-27634564 | Msa0401510:intron | 50.0% |
| TGCTTAGAACCCACTTGGGT+TGG | - | chr3_2:27634720-27634739 | Msa0401510:intron | 50.0% | |
| AACACTAGGCCAACCCAAGT+GGG | + | chr3_2:27634732-27634751 | None:intergenic | 50.0% | |
| GGTCCCAAGCAAACAACACT+AGG | + | chr3_2:27634746-27634765 | None:intergenic | 50.0% | |
| !! | GTTTCAGGTTCGATTCTCCC+TGG | - | chr3_2:27634787-27634806 | Msa0401510:intron | 50.0% |
| ! | TCCCTGGTGCTAATTTCGGT+GGG | - | chr3_2:27634803-27634822 | Msa0401510:intron | 50.0% |
| ACCCACCGAAATTAGCACCA+GGG | + | chr3_2:27634807-27634826 | None:intergenic | 50.0% | |
| AACCCACCGAAATTAGCACC+AGG | + | chr3_2:27634808-27634827 | None:intergenic | 50.0% | |
| ! | TGTTAGTGTCGTGTTGGCGT+CGG | + | chr3_2:27635084-27635103 | None:intergenic | 50.0% |
| TGTAAAAGACTTGGGGGAGG+AGG | - | chr3_2:27635201-27635220 | Msa0401510:intron | 50.0% | |
| GTAAAAGACTTGGGGGAGGA+GGG | - | chr3_2:27635202-27635221 | Msa0401510:intron | 50.0% | |
| TAAAAGACTTGGGGGAGGAG+GGG | - | chr3_2:27635203-27635222 | Msa0401510:intron | 50.0% | |
| TATGTTTATGGACGGAGGGG+AGG | + | chr3_2:27635274-27635293 | None:intergenic | 50.0% | |
| CTCTTGGTTGATTGTCACCC+CGG | - | chr3_2:27635605-27635624 | Msa0401510:intron | 50.0% | |
| TGGGAGTAACTATGCAAGCC+GGG | + | chr3_2:27635626-27635645 | None:intergenic | 50.0% | |
| GTTCATCACGCTTCTGATCC+TGG | + | chr3_2:27635713-27635732 | None:intergenic | 50.0% | |
| TGGTGGCAACACTACTGAAG+AGG | + | chr3_2:27635755-27635774 | None:intergenic | 50.0% | |
| GCAATGGTTGTGTGTGTCAG+GGG | - | chr3_2:27635905-27635924 | Msa0401510:intron | 50.0% | |
| ! | GGTTTGGCGATTTGGCTTCA+GGG | - | chr3_2:27635989-27636008 | Msa0401510:intron | 50.0% |
| ! | GCGATTTGGCTTCAGGGTTA+AGG | - | chr3_2:27635995-27636014 | Msa0401510:intron | 50.0% |
| AGTCGATGCGGCCTCAATTA+CGG | + | chr3_2:27636429-27636448 | None:intergenic | 50.0% | |
| AGCAGTCACGGTAACAGATG+CGG | + | chr3_2:27636520-27636539 | None:intergenic | 50.0% | |
| GATGGTCAGGATAGAGAGGT+AGG | - | chr3_2:27636869-27636888 | Msa0401510:five_prime_UTR | 50.0% | |
| GTGAGTGTCCGTGTCGTGTT+TGG | - | chr3_2:27633395-27633414 | Msa0401510:three_prime_UTR | 55.0% | |
| CAACACTAGGCCAACCCAAG+TGG | + | chr3_2:27634733-27634752 | None:intergenic | 55.0% | |
| ! | CTCCCTGGTGCTAATTTCGG+TGG | - | chr3_2:27634802-27634821 | Msa0401510:intron | 55.0% |
| GGGAGTAACTATGCAAGCCG+GGG | + | chr3_2:27635625-27635644 | None:intergenic | 55.0% | |
| ! | GGGTTTGGCGATTTGGCTTC+AGG | - | chr3_2:27635988-27636007 | Msa0401510:intron | 55.0% |
| TCTCAAACTCCCCTCTGTCG+TGG | - | chr3_2:27636327-27636346 | Msa0401510:intron | 55.0% | |
| TTGTGACCAGATCGTGGTCG+CGG | + | chr3_2:27636367-27636386 | None:intergenic | 55.0% | |
| !! | GGCCGCATCGACTGTAATTG+TGG | - | chr3_2:27636436-27636455 | Msa0401510:intron | 55.0% |
| AATGGTCCGCGACCACGATC+TGG | - | chr3_2:27636358-27636377 | Msa0401510:intron | 60.0% | |
| ! | GTCGTGTTGGCGTCGGACAC+CGG | + | chr3_2:27635077-27635096 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 27632774 | 27636897 | 27632774 | ID=Msa0401510;Name=Msa0401510 |
| chr3_2 | mRNA | 27632774 | 27636897 | 27632774 | ID=Msa0401510-mRNA-1;Parent=Msa0401510;Name=Msa0401510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=215|1|1|1|0.33|0|4|679|127 |
| chr3_2 | exon | 27632774 | 27632915 | 27632774 | ID=Msa0401510-mRNA-1:exon:5697;Parent=Msa0401510-mRNA-1 |
| chr3_2 | exon | 27632937 | 27633746 | 27632937 | ID=Msa0401510-mRNA-1:exon:5696;Parent=Msa0401510-mRNA-1 |
| chr3_2 | exon | 27633877 | 27634083 | 27633877 | ID=Msa0401510-mRNA-1:exon:5695;Parent=Msa0401510-mRNA-1 |
| chr3_2 | exon | 27636779 | 27636897 | 27636779 | ID=Msa0401510-mRNA-1:exon:5694;Parent=Msa0401510-mRNA-1 |
| chr3_2 | five_prime_UTR | 27636779 | 27636897 | 27636779 | ID=Msa0401510-mRNA-1:five_prime_utr;Parent=Msa0401510-mRNA-1 |
| chr3_2 | five_prime_UTR | 27633988 | 27634083 | 27633988 | ID=Msa0401510-mRNA-1:five_prime_utr;Parent=Msa0401510-mRNA-1 |
| chr3_2 | CDS | 27633877 | 27633987 | 27633877 | ID=Msa0401510-mRNA-1:cds;Parent=Msa0401510-mRNA-1 |
| chr3_2 | CDS | 27633474 | 27633746 | 27633474 | ID=Msa0401510-mRNA-1:cds;Parent=Msa0401510-mRNA-1 |
| chr3_2 | three_prime_UTR | 27632937 | 27633473 | 27632937 | ID=Msa0401510-mRNA-1:three_prime_utr;Parent=Msa0401510-mRNA-1 |
| chr3_2 | three_prime_UTR | 27632774 | 27632915 | 27632774 | ID=Msa0401510-mRNA-1:three_prime_utr;Parent=Msa0401510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
