Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402710 | XP_013443148.1 | 97.445 | 274 | 7 | 0 | 1 | 274 | 1 | 274 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402710 | sp|Q9FJJ5|EB1B_ARATH | 74.621 | 264 | 64 | 2 | 1 | 263 | 1 | 262 | 1.70e-144 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402710 | A0A072TJV8 | 97.445 | 274 | 7 | 0 | 1 | 274 | 1 | 274 | 0.0 | 554 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0402710 | Msa1223330 | 0.805984 | 1.025158e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402710 | MtrunA17_Chr3g0092651 | 97.445 | 274 | 7 | 0 | 1 | 274 | 1 | 274 | 0.0 | 554 |
| Msa0402710 | MtrunA17_Chr4g0060561 | 77.289 | 273 | 57 | 3 | 1 | 270 | 1 | 271 | 2.06e-155 | 434 |
| Msa0402710 | MtrunA17_Chr5g0401741 | 58.333 | 288 | 87 | 7 | 1 | 267 | 1 | 276 | 5.84e-109 | 318 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402710 | AT5G62500.1 | 74.621 | 264 | 64 | 2 | 1 | 263 | 1 | 262 | 1.73e-145 | 410 |
| Msa0402710 | AT3G47690.1 | 72.364 | 275 | 60 | 4 | 1 | 271 | 1 | 263 | 2.30e-142 | 401 |
| Msa0402710 | AT5G67270.1 | 55.720 | 271 | 102 | 5 | 1 | 256 | 1 | 268 | 4.25e-103 | 303 |
Find 85 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACGTCATGCTTCAGTTTC+TGG | 0.115731 | 3_2:+31077861 | None:intergenic |
| TGTAATTAAATGACACTTTC+TGG | 0.138568 | 3_2:+31077735 | None:intergenic |
| AGCCAACCTGAGTTTCTATT+TGG | 0.196968 | 3_2:+31079258 | None:intergenic |
| TCCCGTGGAGCGTAGGATTA+AGG | 0.235106 | 3_2:-31079370 | Msa0402710:CDS |
| CGTTACTGTGATTCTGTTAA+TGG | 0.239870 | 3_2:-31079653 | Msa0402710:CDS |
| GAAGCATGACGTCTCATTTC+CGG | 0.279072 | 3_2:-31077852 | Msa0402710:exon |
| GAAGTTAACAGGCTTGTTAA+AGG | 0.316943 | 3_2:-31079716 | Msa0402710:CDS |
| TCTTTAAACTCTTAACATTT+CGG | 0.321327 | 3_2:+31079337 | None:intergenic |
| TGTAACGGAAGGGAATTAAA+TGG | 0.329487 | 3_2:+31082610 | None:intergenic |
| CCCGTGGAGCGTAGGATTAA+GGG | 0.337587 | 3_2:-31079369 | Msa0402710:CDS |
| GGGAGAAATTTCAGGGGAGG+GGG | 0.345253 | 3_2:+31082518 | None:intergenic |
| GGCAGCATATTGAAGTTAAC+AGG | 0.350762 | 3_2:-31079727 | Msa0402710:intron |
| AGAGAGGAAAGGTGAGAGAA+AGG | 0.356242 | 3_2:+31082645 | None:intergenic |
| CAAAATCTCGGTGGATCTCT+TGG | 0.366236 | 3_2:-31078722 | Msa0402710:CDS |
| CATTCTCCAGTTCTGATGTC+TGG | 0.371007 | 3_2:+31078647 | None:intergenic |
| TAATTCGTCAGCAGAGATTC+AGG | 0.371636 | 3_2:-31079123 | Msa0402710:CDS |
| CCACTTGTCCTCGATATCTT+AGG | 0.375329 | 3_2:+31079161 | None:intergenic |
| ATTCATTGCTAGGCTGCATC+TGG | 0.385662 | 3_2:-31081259 | Msa0402710:intron |
| GGAGAAATTTCAGGGGAGGG+GGG | 0.394370 | 3_2:+31082519 | None:intergenic |
| TGCAAAAGAGTCGGCATTAG+AGG | 0.399645 | 3_2:-31077931 | Msa0402710:CDS |
| TTTCTCCTTGTAAGCTTGGA+TGG | 0.403167 | 3_2:-31077698 | Msa0402710:three_prime_UTR |
| GGCGACGAGTATAGGGATAA+TGG | 0.410039 | 3_2:-31082374 | Msa0402710:CDS |
| TCAAACACTACGAATAATAC+TGG | 0.415660 | 3_2:-31079297 | Msa0402710:CDS |
| GTCGGCATTAGAGGAAGCTC+AGG | 0.421605 | 3_2:-31077922 | Msa0402710:CDS |
| GAGAGGAAAGGTGAGAGAAA+GGG | 0.423644 | 3_2:+31082646 | None:intergenic |
| ATGTTGGACATGACGTATCC+AGG | 0.425430 | 3_2:-31081220 | Msa0402710:CDS |
| CCATTTGCGACGAGAGAGAC+TGG | 0.429040 | 3_2:-31077778 | Msa0402710:three_prime_UTR |
| GCTTGTTAAAGGCCGACCTT+TGG | 0.439334 | 3_2:-31079705 | Msa0402710:CDS |
| CCAGTCTCTCTCGTCGCAAA+TGG | 0.440764 | 3_2:+31077778 | None:intergenic |
| AAATGACACTTTCTGGCCAT+TGG | 0.440857 | 3_2:+31077742 | None:intergenic |
| TGATACATCTAAAATACAAT+TGG | 0.441329 | 3_2:+31077619 | None:intergenic |
| AGGCCGACCTTTGGACAACT+TGG | 0.450161 | 3_2:-31079696 | Msa0402710:CDS |
| TTGTGCATTGGCACAACCCC+TGG | 0.459500 | 3_2:+31081202 | None:intergenic |
| GGGGAGAAATTTCAGGGGAG+GGG | 0.464101 | 3_2:+31082517 | None:intergenic |
| GACACTTTCTGGCCATTGGA+TGG | 0.467117 | 3_2:+31077746 | None:intergenic |
| TAGGGGAGAAATTTCAGGGG+AGG | 0.469676 | 3_2:+31082515 | None:intergenic |
| AAAGGTGAGAGAAAGGGAAA+CGG | 0.477907 | 3_2:+31082652 | None:intergenic |
| TCAAAACTATAAAGTTCTAC+AGG | 0.481633 | 3_2:-31081050 | Msa0402710:CDS |
| TCTATGCCAGACATCAGAAC+TGG | 0.488709 | 3_2:-31078653 | Msa0402710:CDS |
| ACTACGAATAATACTGGTTC+AGG | 0.494201 | 3_2:-31079291 | Msa0402710:CDS |
| AGGACAAGTGGAGGATCGGA+TGG | 0.497061 | 3_2:-31079149 | Msa0402710:CDS |
| AGTAACGTTTCAGCCATTGT+AGG | 0.497462 | 3_2:+31079669 | None:intergenic |
| AGGGGAGAAATTTCAGGGGA+GGG | 0.503357 | 3_2:+31082516 | None:intergenic |
| CCCTTAATCCTACGCTCCAC+GGG | 0.509614 | 3_2:+31079369 | None:intergenic |
| ACACTTTCTGGCCATTGGAT+GGG | 0.513016 | 3_2:+31077747 | None:intergenic |
| ATTATCCATCCAAGCTTACA+AGG | 0.517813 | 3_2:+31077693 | None:intergenic |
| ATCGAGGACAAGTGGAGGAT+CGG | 0.524114 | 3_2:-31079153 | Msa0402710:CDS |
| GGACAAGTGGAGGATCGGAT+GGG | 0.531287 | 3_2:-31079148 | Msa0402710:CDS |
| AAGCTTGGATGGATAATCAA+TGG | 0.533283 | 3_2:-31077687 | Msa0402710:three_prime_UTR |
| GATTCAGGCCTTGTCCAAGC+AGG | 0.534074 | 3_2:-31079108 | Msa0402710:intron |
| ACTATAATCCCGTGGAGCGT+AGG | 0.534515 | 3_2:-31079377 | Msa0402710:CDS |
| TGTGTTGCTACCTTGTGCAT+TGG | 0.535818 | 3_2:+31081190 | None:intergenic |
| ACCCTTAATCCTACGCTCCA+CGG | 0.538190 | 3_2:+31079368 | None:intergenic |
| TTACATTAATCAAACATTGG+AGG | 0.542731 | 3_2:-31077898 | Msa0402710:CDS |
| CTAAGTCCAAATAGAAACTC+AGG | 0.542973 | 3_2:-31079264 | Msa0402710:intron |
| GGCTTACATTAATCAAACAT+TGG | 0.556676 | 3_2:-31077901 | Msa0402710:CDS |
| GACAAGTGGAGGATCGGATG+GGG | 0.562896 | 3_2:-31079147 | Msa0402710:CDS |
| TGGAAATTGTTCCCATCCAA+TGG | 0.566483 | 3_2:-31077758 | Msa0402710:three_prime_UTR |
| TGTTGGACATGACGTATCCA+GGG | 0.567424 | 3_2:-31081219 | Msa0402710:CDS |
| AAGTTGTACCTGCTTGGACA+AGG | 0.572645 | 3_2:+31079100 | None:intergenic |
| TGCTGTGCAATGTCAGATGT+TGG | 0.576648 | 3_2:-31081236 | Msa0402710:CDS |
| TAATCTCTCTCGCATTGAAG+AGG | 0.585059 | 3_2:-31082290 | Msa0402710:intron |
| GGTTACTGATCTCAAAATCT+CGG | 0.589120 | 3_2:-31078734 | Msa0402710:CDS |
| ATGGATGGTAAAGAGAAGAG+AGG | 0.594427 | 3_2:+31082629 | None:intergenic |
| CCTAAGATATCGAGGACAAG+TGG | 0.599988 | 3_2:-31079161 | Msa0402710:CDS |
| ACGGAAGGGAATTAAATGGA+TGG | 0.601471 | 3_2:+31082614 | None:intergenic |
| GCGTAGGATTAAGGGTGGAA+AGG | 0.606069 | 3_2:-31079361 | Msa0402710:CDS |
| GTAGAAATGAGATTCTGAGT+TGG | 0.610210 | 3_2:-31082333 | Msa0402710:CDS |
| TCTCTTATATGAATACCAGC+CGG | 0.610311 | 3_2:+31077833 | None:intergenic |
| CAACAAGCTGAAAATTGCGA+AGG | 0.611532 | 3_2:-31081020 | Msa0402710:intron |
| AGGGGTTGTGCCAATGCACA+AGG | 0.613823 | 3_2:-31081200 | Msa0402710:intron |
| TGGTAAAGAGAAGAGAGGAA+AGG | 0.613972 | 3_2:+31082634 | None:intergenic |
| AGCTTGTTTAACAAAGACCC+TGG | 0.617051 | 3_2:+31077806 | None:intergenic |
| CATGACGTCTCATTTCCGGC+TGG | 0.628003 | 3_2:-31077848 | Msa0402710:exon |
| CTTTAGGAACTATAATCCCG+TGG | 0.638702 | 3_2:-31079385 | Msa0402710:intron |
| ACTCCAAGTTGTCCAAAGGT+CGG | 0.639935 | 3_2:+31079693 | None:intergenic |
| TGCTGCTGATGCAAAAGAGT+CGG | 0.643139 | 3_2:-31077940 | Msa0402710:CDS |
| TACTGATCTCAAAATCTCGG+TGG | 0.650709 | 3_2:-31078731 | Msa0402710:CDS |
| AGGAACTCCAAGTTGTCCAA+AGG | 0.653402 | 3_2:+31079689 | None:intergenic |
| TACTGTGATTCTGTTAATGG+TGG | 0.661559 | 3_2:-31079650 | Msa0402710:CDS |
| ACAACTTGGAGTTCCTACAA+TGG | 0.679808 | 3_2:-31079682 | Msa0402710:CDS |
| GTGGAGCGTAGGATTAAGGG+TGG | 0.682025 | 3_2:-31079366 | Msa0402710:CDS |
| GTGTAGGACCTAAGATATCG+AGG | 0.685097 | 3_2:-31079169 | Msa0402710:intron |
| AAGATATCGAGGACAAGTGG+AGG | 0.685573 | 3_2:-31079158 | Msa0402710:CDS |
| GTTGGACATGACGTATCCAG+GGG | 0.722458 | 3_2:-31081218 | Msa0402710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATAAAGATATATAATT+GGG | + | chr3_2:31079884-31079903 | None:intergenic | 10.0% |
| !! | AAAACATAAAGATATATAAT+TGG | + | chr3_2:31079885-31079904 | None:intergenic | 10.0% |
| !!! | AAGTAAAAGTAATTTATTTT+CGG | - | chr3_2:31080407-31080426 | Msa0402710:intron | 10.0% |
| !! | TATAAAAATTTACAACTTAA+GGG | + | chr3_2:31081928-31081947 | None:intergenic | 10.0% |
| !! | ATATAAAAATTTACAACTTA+AGG | + | chr3_2:31081929-31081948 | None:intergenic | 10.0% |
| !!! | GTAAATTTTTATATTTCTTT+AGG | - | chr3_2:31081935-31081954 | Msa0402710:intron | 10.0% |
| !!! | GTTTTAAACAAAACAAAAAA+TGG | + | chr3_2:31077717-31077736 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTTTTTGAAAACT+CGG | + | chr3_2:31078315-31078334 | None:intergenic | 15.0% |
| !!! | AGGTTAATTTGTTTTTAAAA+CGG | - | chr3_2:31078926-31078945 | Msa0402710:intron | 15.0% |
| !!! | TGACAAATAATTTTGAAATT+TGG | - | chr3_2:31079144-31079163 | Msa0402710:CDS | 15.0% |
| !!! | GACAAATAATTTTGAAATTT+GGG | - | chr3_2:31079145-31079164 | Msa0402710:CDS | 15.0% |
| !!! | ACAAATAATTTTGAAATTTG+GGG | - | chr3_2:31079146-31079165 | Msa0402710:CDS | 15.0% |
| !! | TAAAGGTTAATTTATTAACT+TGG | - | chr3_2:31079399-31079418 | Msa0402710:intron | 15.0% |
| !! | TTCTACAATTAAATAGTTTA+CGG | + | chr3_2:31079597-31079616 | None:intergenic | 15.0% |
| !! | AACATAAAGATATATAATTG+GGG | + | chr3_2:31079883-31079902 | None:intergenic | 15.0% |
| !!! | AGTAAAAGTAATTTATTTTC+GGG | - | chr3_2:31080408-31080427 | Msa0402710:intron | 15.0% |
| !!! | TTTTACTTTTAAAAAATGAG+AGG | - | chr3_2:31081685-31081704 | Msa0402710:intron | 15.0% |
| !!! | TTTCTAAAAATATTTTGTTC+TGG | - | chr3_2:31081838-31081857 | Msa0402710:intron | 15.0% |
| !!! | AAAATGAATTTAGAACATAT+GGG | - | chr3_2:31082190-31082209 | Msa0402710:intron | 15.0% |
| !! | AAACAAAACAAAAAATGGAT+TGG | + | chr3_2:31077712-31077731 | None:intergenic | 20.0% |
| !! | AAGAAAGAAAAAGAGAAAAA+TGG | - | chr3_2:31077869-31077888 | Msa0402710:CDS | 20.0% |
| !!! | TTATATTTTTTTTGACTTCG+TGG | - | chr3_2:31078124-31078143 | Msa0402710:intron | 20.0% |
| !! | ATATTCAATGATATAGATTC+AGG | - | chr3_2:31078451-31078470 | Msa0402710:intron | 20.0% |
| !! | TATTCAATGATATAGATTCA+GGG | - | chr3_2:31078452-31078471 | Msa0402710:intron | 20.0% |
| !!! | ATTTTGAATTTGATTCAATC+TGG | - | chr3_2:31078517-31078536 | Msa0402710:intron | 20.0% |
| !! | TAATAAAAGTAGTATGCATT+TGG | - | chr3_2:31078555-31078574 | Msa0402710:intron | 20.0% |
| !! | AGAAATCAATTCAAAAACAA+TGG | + | chr3_2:31078906-31078925 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGAATTGATTTCT+AGG | - | chr3_2:31078906-31078925 | Msa0402710:intron | 20.0% |
| !!! | GGTTAATTTGTTTTTAAAAC+GGG | - | chr3_2:31078927-31078946 | Msa0402710:intron | 20.0% |
| !!! | GTTAATTTGTTTTTAAAACG+GGG | - | chr3_2:31078928-31078947 | Msa0402710:intron | 20.0% |
| !! | TATGAAATAGTATCTTTATC+AGG | - | chr3_2:31079361-31079380 | Msa0402710:CDS | 20.0% |
| !! | TATTTAATTGTAGAAGCTTA+TGG | - | chr3_2:31079602-31079621 | Msa0402710:intron | 20.0% |
| !! | TCTACAATCAAATAGTTTAT+GGG | + | chr3_2:31079659-31079678 | None:intergenic | 20.0% |
| !! | TTCTACAATCAAATAGTTTA+TGG | + | chr3_2:31079660-31079679 | None:intergenic | 20.0% |
| !! | CATGTACATTTCAATATTTA+AGG | - | chr3_2:31079824-31079843 | Msa0402710:intron | 20.0% |
| !!! | TTTTTTAGGGTTATTTCTTT+AGG | - | chr3_2:31079924-31079943 | Msa0402710:intron | 20.0% |
| !!! | AATCAAGTTGATTAAATGAT+AGG | + | chr3_2:31080677-31080696 | None:intergenic | 20.0% |
| !! | TCTTTAAACTCTTAACATTT+CGG | + | chr3_2:31080930-31080949 | None:intergenic | 20.0% |
| !!! | AAAAGCACATTAATTAAAAC+GGG | + | chr3_2:31081073-31081092 | None:intergenic | 20.0% |
| !!! | CAAAAGCACATTAATTAAAA+CGG | + | chr3_2:31081074-31081093 | None:intergenic | 20.0% |
| !! | AGTAACAATGAACAAAAAAA+AGG | + | chr3_2:31081492-31081511 | None:intergenic | 20.0% |
| !!! | ACTTTTACTTTTCAAAACTA+CGG | - | chr3_2:31081577-31081596 | Msa0402710:intron | 20.0% |
| !!! | TTTTGTCACTTTATATTGTT+AGG | - | chr3_2:31081875-31081894 | Msa0402710:intron | 20.0% |
| !!! | TTTTTATATTTCTTTAGGCA+AGG | - | chr3_2:31081940-31081959 | Msa0402710:intron | 20.0% |
| !! | GTTTCTCTTTAAATATGATA+TGG | - | chr3_2:31082034-31082053 | Msa0402710:intron | 20.0% |
| !!! | GAAAATGAATTTAGAACATA+TGG | - | chr3_2:31082189-31082208 | Msa0402710:intron | 20.0% |
| !!! | AAATGAATTTAGAACATATG+GGG | - | chr3_2:31082191-31082210 | Msa0402710:intron | 20.0% |
| !!! | TGATACATCTAAAATACAAT+TGG | + | chr3_2:31082648-31082667 | None:intergenic | 20.0% |
| ! | ATTTAGGGAAAAATGTGTAA+CGG | + | chr3_2:31077672-31077691 | None:intergenic | 25.0% |
| ! | AATAAAGAAAAAAGGAGTGA+AGG | + | chr3_2:31077782-31077801 | None:intergenic | 25.0% |
| ! | AAAAACTCTTGTATTGTGTT+TGG | - | chr3_2:31077837-31077856 | Msa0402710:three_prime_UTR | 25.0% |
| ! | TCATTGAAGAAAAGAAATGA+GGG | + | chr3_2:31078031-31078050 | None:intergenic | 25.0% |
| ! | GAGCTAAAATAATGTGTATT+TGG | + | chr3_2:31078615-31078634 | None:intergenic | 25.0% |
| !! | ATTTTTACCGAAATAAGAGA+AGG | + | chr3_2:31078721-31078740 | None:intergenic | 25.0% |
| ! | TATTTCGGTAAAAATTGTCT+TGG | - | chr3_2:31078726-31078745 | Msa0402710:CDS | 25.0% |
| !!! | ACATAGTTTTTGAGACAATT+TGG | - | chr3_2:31078792-31078811 | Msa0402710:intron | 25.0% |
| ! | ATATCATTAACAATAAGAGC+TGG | + | chr3_2:31078847-31078866 | None:intergenic | 25.0% |
| ! | TCAAAACTATAAAGTTCTAC+AGG | - | chr3_2:31079214-31079233 | Msa0402710:intron | 25.0% |
| ! | TGTTCTGCTTAAAATTTAGA+GGG | + | chr3_2:31079282-31079301 | None:intergenic | 25.0% |
| !! | TAAATTTTAAGCAGAACACT+TGG | - | chr3_2:31079284-31079303 | Msa0402710:CDS | 25.0% |
| ! | CAACTTATTAGGAATATTAC+AGG | + | chr3_2:31079498-31079517 | None:intergenic | 25.0% |
| ! | TAAGCTCAAAACAACTTATT+AGG | + | chr3_2:31079509-31079528 | None:intergenic | 25.0% |
| ! | CTACAATCAAATAGTTTATG+GGG | + | chr3_2:31079658-31079677 | None:intergenic | 25.0% |
| ! | TTGAAATGTACATGAACAAA+GGG | + | chr3_2:31079818-31079837 | None:intergenic | 25.0% |
| ! | ATTGAAATGTACATGAACAA+AGG | + | chr3_2:31079819-31079838 | None:intergenic | 25.0% |
| !!! | TATCTTTATGTTTTTGTCAC+TGG | - | chr3_2:31079891-31079910 | Msa0402710:intron | 25.0% |
| ! | AATACAAAATCCTCCTAATT+TGG | - | chr3_2:31080064-31080083 | Msa0402710:intron | 25.0% |
| ! | ATACAAAATCCTCCTAATTT+GGG | - | chr3_2:31080065-31080084 | Msa0402710:intron | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | - | chr3_2:31080089-31080108 | Msa0402710:intron | 25.0% |
| !! | CTTAACTTGAGAATAAAAAC+TGG | - | chr3_2:31080437-31080456 | Msa0402710:intron | 25.0% |
| ! | ACTGGTATATGAAAATACTT+TGG | - | chr3_2:31080455-31080474 | Msa0402710:intron | 25.0% |
| !! | AAGTTGATTAAATGATAGGA+AGG | + | chr3_2:31080673-31080692 | None:intergenic | 25.0% |
| ! | GTATTAGTGAAAATATGCAT+TGG | + | chr3_2:31080783-31080802 | None:intergenic | 25.0% |
| ! | AACATGAGAACATATATACA+TGG | + | chr3_2:31080825-31080844 | None:intergenic | 25.0% |
| !! | TATGTACTATATTTTCAGCT+GGG | + | chr3_2:31081254-31081273 | None:intergenic | 25.0% |
| ! | TCAATTACCTACTAATCTAT+TGG | - | chr3_2:31081409-31081428 | Msa0402710:intron | 25.0% |
| !!! | CTTTTACTTTTCAAAACTAC+GGG | - | chr3_2:31081578-31081597 | Msa0402710:intron | 25.0% |
| ! | ATATTGTTAGGTTTAGTGTA+TGG | - | chr3_2:31081887-31081906 | Msa0402710:intron | 25.0% |
| ! | TATTGTTAGGTTTAGTGTAT+GGG | - | chr3_2:31081888-31081907 | Msa0402710:intron | 25.0% |
| ! | TTTGATTATTAACACATGCA+TGG | + | chr3_2:31082135-31082154 | None:intergenic | 25.0% |
| ! | GCATGTGTTAATAATCAAAT+AGG | - | chr3_2:31082136-31082155 | Msa0402710:intron | 25.0% |
| !!! | ATGTTACTTTTTGCAGATAT+CGG | - | chr3_2:31082279-31082298 | Msa0402710:intron | 25.0% |
| ! | TTACATTAATCAAACATTGG+AGG | - | chr3_2:31082366-31082385 | Msa0402710:CDS | 25.0% |
| !! | ATTCATATAAGAGATTTTCC+AGG | - | chr3_2:31082440-31082459 | Msa0402710:five_prime_UTR | 25.0% |
| !! | TTCATATAAGAGATTTTCCA+GGG | - | chr3_2:31082441-31082460 | Msa0402710:five_prime_UTR | 25.0% |
| ! | TGTAATTAAATGACACTTTC+TGG | + | chr3_2:31082532-31082551 | None:intergenic | 25.0% |
| !! | ATTTTAGGGGAGAAATTTCA+GGG | + | chr3_2:31077756-31077775 | None:intergenic | 30.0% |
| CATTGAAGAAAAGAAATGAG+GGG | + | chr3_2:31078030-31078049 | None:intergenic | 30.0% | |
| CTCATTGAAGAAAAGAAATG+AGG | + | chr3_2:31078032-31078051 | None:intergenic | 30.0% | |
| TGCAGATCAAATAATTCCTA+GGG | + | chr3_2:31078387-31078406 | None:intergenic | 30.0% | |
| ATGCAGATCAAATAATTCCT+AGG | + | chr3_2:31078388-31078407 | None:intergenic | 30.0% | |
| !!! | TTGATCTGCATGTTGATTTT+TGG | - | chr3_2:31078397-31078416 | Msa0402710:intron | 30.0% |
| !!! | TGATCTGCATGTTGATTTTT+GGG | - | chr3_2:31078398-31078417 | Msa0402710:intron | 30.0% |
| AAAAATCTTACCCATGTTTC+TGG | - | chr3_2:31078484-31078503 | Msa0402710:intron | 30.0% | |
| AATACAATTGCCAGAAACAT+GGG | + | chr3_2:31078497-31078516 | None:intergenic | 30.0% | |
| TAATACAATTGCCAGAAACA+TGG | + | chr3_2:31078498-31078517 | None:intergenic | 30.0% | |
| TAAAAGTAGTATGCATTTGG+CGG | - | chr3_2:31078558-31078577 | Msa0402710:intron | 30.0% | |
| !! | AATGTGTATTTGGTCTTAGT+TGG | + | chr3_2:31078605-31078624 | None:intergenic | 30.0% |
| TGAGACAATTTGGATAGTTA+AGG | - | chr3_2:31078802-31078821 | Msa0402710:intron | 30.0% | |
| GCAAATGAAATATCAGAAGA+GGG | + | chr3_2:31079123-31079142 | None:intergenic | 30.0% | |
| TGCAAATGAAATATCAGAAG+AGG | + | chr3_2:31079124-31079143 | None:intergenic | 30.0% | |
| GTGTTCTGCTTAAAATTTAG+AGG | + | chr3_2:31079283-31079302 | None:intergenic | 30.0% | |
| GGATCTAGAAATGCTAATAA+AGG | - | chr3_2:31079382-31079401 | Msa0402710:CDS | 30.0% | |
| TTGGTTCCATTCATGAATTT+GGG | - | chr3_2:31079418-31079437 | Msa0402710:intron | 30.0% | |
| TATGACATATGCACTTGTAT+TGG | - | chr3_2:31079448-31079467 | Msa0402710:intron | 30.0% | |
| TGTTTCCATATGCTATCTTA+AGG | + | chr3_2:31079544-31079563 | None:intergenic | 30.0% | |
| TCCATAATCGAAGAGTTTAT+GGG | + | chr3_2:31079725-31079744 | None:intergenic | 30.0% | |
| TGAAATGTACATGAACAAAG+GGG | + | chr3_2:31079817-31079836 | None:intergenic | 30.0% | |
| ATAATTGGGGAAGAGTAAAA+GGG | + | chr3_2:31079870-31079889 | None:intergenic | 30.0% | |
| TATAATTGGGGAAGAGTAAA+AGG | + | chr3_2:31079871-31079890 | None:intergenic | 30.0% | |
| ! | ATAGATGACTTTGAGAGAAA+AGG | - | chr3_2:31080016-31080035 | Msa0402710:intron | 30.0% |
| ! | TAGATGACTTTGAGAGAAAA+GGG | - | chr3_2:31080017-31080036 | Msa0402710:intron | 30.0% |
| TACAAAATCCTCCTAATTTG+GGG | - | chr3_2:31080066-31080085 | Msa0402710:intron | 30.0% | |
| !!! | TTTTTTAGTTCCCCCAAATT+AGG | + | chr3_2:31080080-31080099 | None:intergenic | 30.0% |
| GGGGAACTAAAAAATTGTAT+TGG | - | chr3_2:31080086-31080105 | Msa0402710:intron | 30.0% | |
| CTAAAAAATTGTATTGGAGG+AGG | - | chr3_2:31080092-31080111 | Msa0402710:intron | 30.0% | |
| ! | TAGGGGGAAAAAAGAATTTT+GGG | + | chr3_2:31080171-31080190 | None:intergenic | 30.0% |
| ! | ATAGGGGGAAAAAAGAATTT+TGG | + | chr3_2:31080172-31080191 | None:intergenic | 30.0% |
| AAAAGATTTGATGGAGTACA+AGG | - | chr3_2:31080268-31080287 | Msa0402710:intron | 30.0% | |
| AAAAGACATGCAATTGATGA+AGG | + | chr3_2:31080361-31080380 | None:intergenic | 30.0% | |
| CAAGAAGAAATTTCACATTC+TGG | + | chr3_2:31080387-31080406 | None:intergenic | 30.0% | |
| TCCTAAAGGGAAAATAAGAA+GGG | + | chr3_2:31080867-31080886 | None:intergenic | 30.0% | |
| TTCCTAAAGGGAAAATAAGA+AGG | + | chr3_2:31080868-31080887 | None:intergenic | 30.0% | |
| TCAAACACTACGAATAATAC+TGG | - | chr3_2:31080967-31080986 | Msa0402710:intron | 30.0% | |
| !! | ATTAATGTGCTTTTGAGTGT+AGG | - | chr3_2:31081079-31081098 | Msa0402710:CDS | 30.0% |
| ! | CTATGTACTATATTTTCAGC+TGG | + | chr3_2:31081255-31081274 | None:intergenic | 30.0% |
| TACTTTCTCTCAATAGTCAT+GGG | + | chr3_2:31081287-31081306 | None:intergenic | 30.0% | |
| TTACTTTCTCTCAATAGTCA+TGG | + | chr3_2:31081288-31081307 | None:intergenic | 30.0% | |
| ACAAGAACCAATAGATTAGT+AGG | + | chr3_2:31081419-31081438 | None:intergenic | 30.0% | |
| !! | TCGAAGGTATTAGAACATTT+AGG | + | chr3_2:31081806-31081825 | None:intergenic | 30.0% |
| AAATGACTCTTTGTATGGTT+TGG | - | chr3_2:31081965-31081984 | Msa0402710:intron | 30.0% | |
| ATACAATTTCAAGAAACGCA+GGG | + | chr3_2:31082069-31082088 | None:intergenic | 30.0% | |
| TATACAATTTCAAGAAACGC+AGG | + | chr3_2:31082070-31082089 | None:intergenic | 30.0% | |
| GAAATTGTATATGCTTGCTT+TGG | - | chr3_2:31082079-31082098 | Msa0402710:intron | 30.0% | |
| GGCTTACATTAATCAAACAT+TGG | - | chr3_2:31082363-31082382 | Msa0402710:CDS | 30.0% | |
| ! | TGTAACGGAAGGGAATTAAA+TGG | + | chr3_2:31077657-31077676 | None:intergenic | 35.0% |
| !! | TTTTAGGGGAGAAATTTCAG+GGG | + | chr3_2:31077755-31077774 | None:intergenic | 35.0% |
| !! | GATTTTAGGGGAGAAATTTC+AGG | + | chr3_2:31077757-31077776 | None:intergenic | 35.0% |
| ! | AGGAGTGAAGGAAGATTTTA+GGG | + | chr3_2:31077770-31077789 | None:intergenic | 35.0% |
| ! | AAGGAGTGAAGGAAGATTTT+AGG | + | chr3_2:31077771-31077790 | None:intergenic | 35.0% |
| ! | ATGGATAGCGCATATTTTGT+CGG | - | chr3_2:31077909-31077928 | Msa0402710:CDS | 35.0% |
| GTAGAAATGAGATTCTGAGT+TGG | - | chr3_2:31077931-31077950 | Msa0402710:CDS | 35.0% | |
| TGTGTTGGGTCAATTCATAT+AGG | - | chr3_2:31078213-31078232 | Msa0402710:intron | 35.0% | |
| GTGTTGGGTCAATTCATATA+GGG | - | chr3_2:31078214-31078233 | Msa0402710:intron | 35.0% | |
| !!! | ATTTTTGGGTGTTCACATTG+TGG | - | chr3_2:31078412-31078431 | Msa0402710:intron | 35.0% |
| ! | AAGCAAGCCTTCTCTTATTT+CGG | - | chr3_2:31078711-31078730 | Msa0402710:CDS | 35.0% |
| ! | AGTCAATAGTTTTTCCGTTG+TGG | - | chr3_2:31078750-31078769 | Msa0402710:intron | 35.0% |
| CAAGATACTTTCTACCACAA+CGG | + | chr3_2:31078767-31078786 | None:intergenic | 35.0% | |
| !! | TGAAATTTGGGGTTCGTTTT+AGG | - | chr3_2:31079157-31079176 | Msa0402710:CDS | 35.0% |
| CTTGGTTCCATTCATGAATT+TGG | - | chr3_2:31079417-31079436 | Msa0402710:intron | 35.0% | |
| GATAAGCCCAAATTCATGAA+TGG | + | chr3_2:31079427-31079446 | None:intergenic | 35.0% | |
| ! | TATGCACTTGTATTGGTGTT+TGG | - | chr3_2:31079455-31079474 | Msa0402710:intron | 35.0% |
| ACCCATAAACTCTTCGATTA+TGG | - | chr3_2:31079721-31079740 | Msa0402710:CDS | 35.0% | |
| GTCCATAATCGAAGAGTTTA+TGG | + | chr3_2:31079726-31079745 | None:intergenic | 35.0% | |
| !!! | TGGTAGACTGCAGTTTTTTA+GGG | - | chr3_2:31079911-31079930 | Msa0402710:intron | 35.0% |
| ACAAAATCCTCCTAATTTGG+GGG | - | chr3_2:31080067-31080086 | Msa0402710:intron | 35.0% | |
| ! | ATTGTATTGGAGGAGGATTT+TGG | - | chr3_2:31080099-31080118 | Msa0402710:intron | 35.0% |
| ! | AGGGGGAAAAAAGAATTTTG+GGG | + | chr3_2:31080170-31080189 | None:intergenic | 35.0% |
| !! | TTTTGGGGGTCGAAAATATA+GGG | + | chr3_2:31080189-31080208 | None:intergenic | 35.0% |
| ! | TCCATCAAATCTTTTACGCA+GGG | + | chr3_2:31080263-31080282 | None:intergenic | 35.0% |
| GAGCTAATTTGATTACCATG+TGG | - | chr3_2:31080516-31080535 | Msa0402710:intron | 35.0% | |
| !! | GAAGTTAACAGGCTTGTTAA+AGG | - | chr3_2:31080548-31080567 | Msa0402710:intron | 35.0% |
| CGTTACTGTGATTCTGTTAA+TGG | - | chr3_2:31080611-31080630 | Msa0402710:intron | 35.0% | |
| TACTGTGATTCTGTTAATGG+TGG | - | chr3_2:31080614-31080633 | Msa0402710:intron | 35.0% | |
| !!! | ACCCTTCTTATTTTCCCTTT+AGG | - | chr3_2:31080863-31080882 | Msa0402710:intron | 35.0% |
| ACGGGATTATAGTTCCTAAA+GGG | + | chr3_2:31080880-31080899 | None:intergenic | 35.0% | |
| !! | ACTACGAATAATACTGGTTC+AGG | - | chr3_2:31080973-31080992 | Msa0402710:intron | 35.0% |
| CTAAGTCCAAATAGAAACTC+AGG | - | chr3_2:31081000-31081019 | Msa0402710:intron | 35.0% | |
| ! | TTTTCAAAGTTGTACCTGCT+TGG | + | chr3_2:31081173-31081192 | None:intergenic | 35.0% |
| ! | GCAGGTACAACTTTGAAAAT+AGG | - | chr3_2:31081174-31081193 | Msa0402710:intron | 35.0% |
| GATTGAGACAATGAAAACAC+AGG | + | chr3_2:31081389-31081408 | None:intergenic | 35.0% | |
| !!! | ACTTCGCTTTTTTGTTTCAC+AGG | - | chr3_2:31081509-31081528 | Msa0402710:intron | 35.0% |
| GGTTACTGATCTCAAAATCT+CGG | - | chr3_2:31081530-31081549 | Msa0402710:intron | 35.0% | |
| CATAGAAGTAGACATGATCA+CGG | + | chr3_2:31081724-31081743 | None:intergenic | 35.0% | |
| TAGGTTTAGTGTATGGGATA+AGG | - | chr3_2:31081894-31081913 | Msa0402710:intron | 35.0% | |
| AGGAGAAATGACTCTTTGTA+TGG | - | chr3_2:31081960-31081979 | Msa0402710:intron | 35.0% | |
| ! | TACCTCTACATCTGACATTT+TGG | - | chr3_2:31082010-31082029 | Msa0402710:intron | 35.0% |
| TACAATTTCAAGAAACGCAG+GGG | + | chr3_2:31082068-31082087 | None:intergenic | 35.0% | |
| TCTCTTATATGAATACCAGC+CGG | + | chr3_2:31082434-31082453 | None:intergenic | 35.0% | |
| ! | TGTTTTTCTCCTTGTAAGCT+TGG | - | chr3_2:31082562-31082581 | Msa0402710:five_prime_UTR | 35.0% |
| ATTATCCATCCAAGCTTACA+AGG | + | chr3_2:31082574-31082593 | None:intergenic | 35.0% | |
| AAGCTTGGATGGATAATCAA+TGG | - | chr3_2:31082577-31082596 | Msa0402710:five_prime_UTR | 35.0% | |
| AAAGGTGAGAGAAAGGGAAA+CGG | + | chr3_2:31077615-31077634 | None:intergenic | 40.0% | |
| TGGTAAAGAGAAGAGAGGAA+AGG | + | chr3_2:31077633-31077652 | None:intergenic | 40.0% | |
| ATGGATGGTAAAGAGAAGAG+AGG | + | chr3_2:31077638-31077657 | None:intergenic | 40.0% | |
| ACGGAAGGGAATTAAATGGA+TGG | + | chr3_2:31077653-31077672 | None:intergenic | 40.0% | |
| ! | GGGAAAAATGTGTAACGGAA+GGG | + | chr3_2:31077667-31077686 | None:intergenic | 40.0% |
| ! | AGGGAAAAATGTGTAACGGA+AGG | + | chr3_2:31077668-31077687 | None:intergenic | 40.0% |
| ! | GGAGTGAAGGAAGATTTTAG+GGG | + | chr3_2:31077769-31077788 | None:intergenic | 40.0% |
| AGAAAAATGGCGACGAGTAT+AGG | - | chr3_2:31077882-31077901 | Msa0402710:CDS | 40.0% | |
| GAAAAATGGCGACGAGTATA+GGG | - | chr3_2:31077883-31077902 | Msa0402710:CDS | 40.0% | |
| TAATCTCTCTCGCATTGAAG+AGG | - | chr3_2:31077974-31077993 | Msa0402710:intron | 40.0% | |
| TGAAGAAAAGAAATGAGGGG+AGG | + | chr3_2:31078027-31078046 | None:intergenic | 40.0% | |
| AACACATGAATTGTCAGGAC+CGG | + | chr3_2:31078199-31078218 | None:intergenic | 40.0% | |
| GTCCTGACAATTCATGTGTT+GGG | - | chr3_2:31078199-31078218 | Msa0402710:intron | 40.0% | |
| CTAGGGTGAGACATATCAAA+TGG | + | chr3_2:31078370-31078389 | None:intergenic | 40.0% | |
| CATTTGATATGTCTCACCCT+AGG | - | chr3_2:31078368-31078387 | Msa0402710:intron | 40.0% | |
| ACAATCAATTTCGAGAGGCT+AGG | + | chr3_2:31078686-31078705 | None:intergenic | 40.0% | |
| CCACAACAATCAATTTCGAG+AGG | + | chr3_2:31078691-31078710 | None:intergenic | 40.0% | |
| CCTCTCGAAATTGATTGTTG+TGG | - | chr3_2:31078688-31078707 | Msa0402710:CDS | 40.0% | |
| ATGAACACAGGGCATAAGAA+TGG | + | chr3_2:31078987-31079006 | None:intergenic | 40.0% | |
| CCTAGCAATGAATGAACACA+GGG | + | chr3_2:31078998-31079017 | None:intergenic | 40.0% | |
| CAACAAGCTGAAAATTGCGA+AGG | - | chr3_2:31079244-31079263 | Msa0402710:intron | 40.0% | |
| GTGCTCCTTAAGATAGCATA+TGG | - | chr3_2:31079536-31079555 | Msa0402710:intron | 40.0% | |
| !!! | CTGGTAGACTGCAGTTTTTT+AGG | - | chr3_2:31079910-31079929 | Msa0402710:intron | 40.0% |
| ! | TTAGGCTTTGTCTGTGAGTT+TGG | - | chr3_2:31079942-31079961 | Msa0402710:intron | 40.0% |
| ! | ACTTTGAGAGAAAAGGGCTT+TGG | - | chr3_2:31080023-31080042 | Msa0402710:intron | 40.0% |
| ! | CTTTGAGAGAAAAGGGCTTT+GGG | - | chr3_2:31080024-31080043 | Msa0402710:intron | 40.0% |
| TTTGAGAGAAAAGGGCTTTG+GGG | - | chr3_2:31080025-31080044 | Msa0402710:intron | 40.0% | |
| ! | TTTAGTTCCCCCAAATTAGG+AGG | + | chr3_2:31080077-31080096 | None:intergenic | 40.0% |
| ! | TATTGGAGGAGGATTTTGGA+GGG | - | chr3_2:31080103-31080122 | Msa0402710:intron | 40.0% |
| TTTGGGGGTCGAAAATATAG+GGG | + | chr3_2:31080188-31080207 | None:intergenic | 40.0% | |
| !!! | GTTTTGGGGGTCGAAAATAT+AGG | + | chr3_2:31080190-31080209 | None:intergenic | 40.0% |
| TAAGGGTCTGTTTGGGAATT+TGG | + | chr3_2:31080226-31080245 | None:intergenic | 40.0% | |
| AAATTCCCAAACAGACCCTT+AGG | - | chr3_2:31080225-31080244 | Msa0402710:intron | 40.0% | |
| ACCCTGCGTAAAAGATTTGA+TGG | - | chr3_2:31080259-31080278 | Msa0402710:intron | 40.0% | |
| ! | CTCCATCAAATCTTTTACGC+AGG | + | chr3_2:31080264-31080283 | None:intergenic | 40.0% |
| TTTGATGGAGTACAAGGTTG+CGG | - | chr3_2:31080274-31080293 | Msa0402710:intron | 40.0% | |
| TTGATGAAGGTAGGATAGCA+TGG | + | chr3_2:31080348-31080367 | None:intergenic | 40.0% | |
| GACATGCAATTGATGAAGGT+AGG | + | chr3_2:31080357-31080376 | None:intergenic | 40.0% | |
| AACTTCAATATGCTGCCACA+TGG | + | chr3_2:31080534-31080553 | None:intergenic | 40.0% | |
| GGCAGCATATTGAAGTTAAC+AGG | - | chr3_2:31080537-31080556 | Msa0402710:intron | 40.0% | |
| ACAACTTGGAGTTCCTACAA+TGG | - | chr3_2:31080582-31080601 | Msa0402710:intron | 40.0% | |
| AGTAACGTTTCAGCCATTGT+AGG | + | chr3_2:31080598-31080617 | None:intergenic | 40.0% | |
| CACGGGATTATAGTTCCTAA+AGG | + | chr3_2:31080881-31080900 | None:intergenic | 40.0% | |
| ! | CTTTAGGAACTATAATCCCG+TGG | - | chr3_2:31080879-31080898 | Msa0402710:intron | 40.0% |
| GTCCAAATAGAAACTCAGGT+TGG | - | chr3_2:31081004-31081023 | Msa0402710:intron | 40.0% | |
| AGCCAACCTGAGTTTCTATT+TGG | + | chr3_2:31081009-31081028 | None:intergenic | 40.0% | |
| TAATTCGTCAGCAGAGATTC+AGG | - | chr3_2:31081141-31081160 | Msa0402710:intron | 40.0% | |
| TCAATAGTCATGGGCTTCTT+TGG | + | chr3_2:31081278-31081297 | None:intergenic | 40.0% | |
| ACAGGCATGTATATGCTATC+AGG | + | chr3_2:31081371-31081390 | None:intergenic | 40.0% | |
| TACTGATCTCAAAATCTCGG+TGG | - | chr3_2:31081533-31081552 | Msa0402710:intron | 40.0% | |
| ACCTGTAAGAATTCCAGCAA+AGG | - | chr3_2:31081641-31081660 | Msa0402710:intron | 40.0% | |
| TTCTAATACCTTCGATCGTC+TGG | - | chr3_2:31081811-31081830 | Msa0402710:intron | 40.0% | |
| GATGTAGAGGTAGAAAACAC+AGG | + | chr3_2:31082002-31082021 | None:intergenic | 40.0% | |
| CACCAAAATGTCAGATGTAG+AGG | + | chr3_2:31082015-31082034 | None:intergenic | 40.0% | |
| ACAATTTCAAGAAACGCAGG+GGG | + | chr3_2:31082067-31082086 | None:intergenic | 40.0% | |
| ! | AGCTTGTTTAACAAAGACCC+TGG | + | chr3_2:31082461-31082480 | None:intergenic | 40.0% |
| TGGAAATTGTTCCCATCCAA+TGG | - | chr3_2:31082506-31082525 | Msa0402710:five_prime_UTR | 40.0% | |
| ! | AAATGACACTTTCTGGCCAT+TGG | + | chr3_2:31082525-31082544 | None:intergenic | 40.0% |
| TTTCTCCTTGTAAGCTTGGA+TGG | - | chr3_2:31082566-31082585 | Msa0402710:five_prime_UTR | 40.0% | |
| GAGAGGAAAGGTGAGAGAAA+GGG | + | chr3_2:31077621-31077640 | None:intergenic | 45.0% | |
| AGAGAGGAAAGGTGAGAGAA+AGG | + | chr3_2:31077622-31077641 | None:intergenic | 45.0% | |
| GTCTCAGGTTCGAATTCTTC+CGG | - | chr3_2:31078177-31078196 | Msa0402710:intron | 45.0% | |
| GGTCCTGACAATTCATGTGT+TGG | - | chr3_2:31078198-31078217 | Msa0402710:intron | 45.0% | |
| GACCCAACACATGAATTGTC+AGG | + | chr3_2:31078204-31078223 | None:intergenic | 45.0% | |
| !! | TTGTTGCACTAGCTGGTCTT+TGG | - | chr3_2:31078281-31078300 | Msa0402710:intron | 45.0% |
| !! | TGTTGCACTAGCTGGTCTTT+GGG | - | chr3_2:31078282-31078301 | Msa0402710:intron | 45.0% |
| CCCTGTGTTCATTCATTGCT+AGG | - | chr3_2:31078995-31079014 | Msa0402710:intron | 45.0% | |
| GCCTAGCAATGAATGAACAC+AGG | + | chr3_2:31078999-31079018 | None:intergenic | 45.0% | |
| ATTCATTGCTAGGCTGCATC+TGG | - | chr3_2:31079005-31079024 | Msa0402710:intron | 45.0% | |
| TGCTGTGCAATGTCAGATGT+TGG | - | chr3_2:31079028-31079047 | Msa0402710:intron | 45.0% | |
| ATGTTGGACATGACGTATCC+AGG | - | chr3_2:31079044-31079063 | Msa0402710:intron | 45.0% | |
| TGTTGGACATGACGTATCCA+GGG | - | chr3_2:31079045-31079064 | Msa0402710:intron | 45.0% | |
| ! | TGTGTTGCTACCTTGTGCAT+TGG | + | chr3_2:31079077-31079096 | None:intergenic | 45.0% |
| GGGGATAAACTCATAAGCTC+TGG | + | chr3_2:31079639-31079658 | None:intergenic | 45.0% | |
| GTACATGAACAAAGGGGCTT+TGG | + | chr3_2:31079811-31079830 | None:intergenic | 45.0% | |
| GCTTTGTCTGTGAGTTTGGA+GGG | - | chr3_2:31079946-31079965 | Msa0402710:intron | 45.0% | |
| CTTTGTCTGTGAGTTTGGAG+GGG | - | chr3_2:31079947-31079966 | Msa0402710:intron | 45.0% | |
| GGGAAACAGGAATGAACAAG+TGG | - | chr3_2:31079988-31080007 | Msa0402710:intron | 45.0% | |
| ! | TTGAGAGAAAAGGGCTTTGG+GGG | - | chr3_2:31080026-31080045 | Msa0402710:intron | 45.0% |
| ! | GTATTGGAGGAGGATTTTGG+AGG | - | chr3_2:31080102-31080121 | Msa0402710:intron | 45.0% |
| TTGGGGGTCGAAAATATAGG+GGG | + | chr3_2:31080187-31080206 | None:intergenic | 45.0% | |
| GTCTGTTTGGGAATTTGGAG+GGG | + | chr3_2:31080221-31080240 | None:intergenic | 45.0% | |
| GGTCTGTTTGGGAATTTGGA+GGG | + | chr3_2:31080222-31080241 | None:intergenic | 45.0% | |
| ACTCCAAGTTGTCCAAAGGT+CGG | + | chr3_2:31080574-31080593 | None:intergenic | 45.0% | |
| AGGAACTCCAAGTTGTCCAA+AGG | + | chr3_2:31080578-31080597 | None:intergenic | 45.0% | |
| GTGTAGGACCTAAGATATCG+AGG | - | chr3_2:31081095-31081114 | Msa0402710:intron | 45.0% | |
| CCACTTGTCCTCGATATCTT+AGG | + | chr3_2:31081106-31081125 | None:intergenic | 45.0% | |
| CCTAAGATATCGAGGACAAG+TGG | - | chr3_2:31081103-31081122 | Msa0402710:intron | 45.0% | |
| AAGATATCGAGGACAAGTGG+AGG | - | chr3_2:31081106-31081125 | Msa0402710:intron | 45.0% | |
| AAGTTGTACCTGCTTGGACA+AGG | + | chr3_2:31081167-31081186 | None:intergenic | 45.0% | |
| CAAAATCTCGGTGGATCTCT+TGG | - | chr3_2:31081542-31081561 | Msa0402710:intron | 45.0% | |
| TCTATGCCAGACATCAGAAC+TGG | - | chr3_2:31081611-31081630 | Msa0402710:intron | 45.0% | |
| ! | CATTCTCCAGTTCTGATGTC+TGG | + | chr3_2:31081620-31081639 | None:intergenic | 45.0% |
| GCCTTTGCTGGAATTCTTAC+AGG | + | chr3_2:31081645-31081664 | None:intergenic | 45.0% | |
| AGTAGACATGATCACGGTCA+AGG | + | chr3_2:31081718-31081737 | None:intergenic | 45.0% | |
| ATGCAGTACTCTTAGAAGCG+TGG | - | chr3_2:31082219-31082238 | Msa0402710:intron | 45.0% | |
| TGCTGCTGATGCAAAAGAGT+CGG | - | chr3_2:31082324-31082343 | Msa0402710:CDS | 45.0% | |
| TGCAAAAGAGTCGGCATTAG+AGG | - | chr3_2:31082333-31082352 | Msa0402710:CDS | 45.0% | |
| AGACGTCATGCTTCAGTTTC+TGG | + | chr3_2:31082406-31082425 | None:intergenic | 45.0% | |
| GAAGCATGACGTCTCATTTC+CGG | - | chr3_2:31082412-31082431 | Msa0402710:five_prime_UTR | 45.0% | |
| ! | ACACTTTCTGGCCATTGGAT+GGG | + | chr3_2:31082520-31082539 | None:intergenic | 45.0% |
| !!! | TTTTGTTTTATTTTTATTTA+GGG | + | chr3_2:31077687-31077706 | None:intergenic | 5.0% |
| !!! | TTTTTGTTTTATTTTTATTT+AGG | + | chr3_2:31077688-31077707 | None:intergenic | 5.0% |
| !!! | TTTTTTTTAATAAAGAAAAA+AGG | + | chr3_2:31077790-31077809 | None:intergenic | 5.0% |
| AGGGGAGAAATTTCAGGGGA+GGG | + | chr3_2:31077751-31077770 | None:intergenic | 50.0% | |
| TAGGGGAGAAATTTCAGGGG+AGG | + | chr3_2:31077752-31077771 | None:intergenic | 50.0% | |
| GGCGACGAGTATAGGGATAA+TGG | - | chr3_2:31077890-31077909 | Msa0402710:CDS | 50.0% | |
| CTAGAGAGGAGCAGACTCTA+AGG | + | chr3_2:31078157-31078176 | None:intergenic | 50.0% | |
| CTTAGAGTCTGCTCCTCTCT+AGG | - | chr3_2:31078155-31078174 | Msa0402710:intron | 50.0% | |
| TTCGAACCTGAGACCTAGAG+AGG | + | chr3_2:31078171-31078190 | None:intergenic | 50.0% | |
| TTTAATTGAGCCCCCGCTAG+TGG | - | chr3_2:31078249-31078268 | Msa0402710:intron | 50.0% | |
| GTTGGACATGACGTATCCAG+GGG | - | chr3_2:31079046-31079065 | Msa0402710:intron | 50.0% | |
| TGGGGAAGAGTAAAAGGGCA+AGG | + | chr3_2:31079865-31079884 | None:intergenic | 50.0% | |
| ! | GGCTTTGTCTGTGAGTTTGG+AGG | - | chr3_2:31079945-31079964 | Msa0402710:intron | 50.0% |
| TCTGTGAGTTTGGAGGGGAA+GGG | - | chr3_2:31079952-31079971 | Msa0402710:intron | 50.0% | |
| !! | TGAGAGAAAAGGGCTTTGGG+GGG | - | chr3_2:31080027-31080046 | Msa0402710:intron | 50.0% |
| TTTGGGAATTTGGAGGGGAG+GGG | + | chr3_2:31080216-31080235 | None:intergenic | 50.0% | |
| GTTTGGGAATTTGGAGGGGA+GGG | + | chr3_2:31080217-31080236 | None:intergenic | 50.0% | |
| TGTTTGGGAATTTGGAGGGG+AGG | + | chr3_2:31080218-31080237 | None:intergenic | 50.0% | |
| GGGTCTGTTTGGGAATTTGG+AGG | + | chr3_2:31080223-31080242 | None:intergenic | 50.0% | |
| TCCCAAACAGACCCTTAGGA+AGG | - | chr3_2:31080229-31080248 | Msa0402710:intron | 50.0% | |
| CCCTTCCTAAGGGTCTGTTT+GGG | + | chr3_2:31080233-31080252 | None:intergenic | 50.0% | |
| CCCAAACAGACCCTTAGGAA+GGG | - | chr3_2:31080230-31080249 | Msa0402710:intron | 50.0% | |
| ACCCTTCCTAAGGGTCTGTT+TGG | + | chr3_2:31080234-31080253 | None:intergenic | 50.0% | |
| AAACAGACCCTTAGGAAGGG+TGG | - | chr3_2:31080233-31080252 | Msa0402710:intron | 50.0% | |
| GGGTTAACCACCCTTCCTAA+GGG | + | chr3_2:31080243-31080262 | None:intergenic | 50.0% | |
| AGGGTTAACCACCCTTCCTA+AGG | + | chr3_2:31080244-31080263 | None:intergenic | 50.0% | |
| ! | GCTTGTTAAAGGCCGACCTT+TGG | - | chr3_2:31080559-31080578 | Msa0402710:intron | 50.0% |
| ACTATAATCCCGTGGAGCGT+AGG | - | chr3_2:31080887-31080906 | Msa0402710:intron | 50.0% | |
| ACCCTTAATCCTACGCTCCA+CGG | + | chr3_2:31080899-31080918 | None:intergenic | 50.0% | |
| GCGTAGGATTAAGGGTGGAA+AGG | - | chr3_2:31080903-31080922 | Msa0402710:intron | 50.0% | |
| ATCGAGGACAAGTGGAGGAT+CGG | - | chr3_2:31081111-31081130 | Msa0402710:intron | 50.0% | |
| TGGGCTTCAATGCTGAAAGG+AGG | + | chr3_2:31081235-31081254 | None:intergenic | 50.0% | |
| AGCTGGGCTTCAATGCTGAA+AGG | + | chr3_2:31081238-31081257 | None:intergenic | 50.0% | |
| TGCTATCAGGCGCTATCATC+AGG | + | chr3_2:31081358-31081377 | None:intergenic | 50.0% | |
| ACTACACTGCAAGCCTTTGC+TGG | + | chr3_2:31081657-31081676 | None:intergenic | 50.0% | |
| GAAACACTCCAGACGATCGA+AGG | + | chr3_2:31081822-31081841 | None:intergenic | 50.0% | |
| ! | GACACTTTCTGGCCATTGGA+TGG | + | chr3_2:31082521-31082540 | None:intergenic | 50.0% |
| GGAGAAATTTCAGGGGAGGG+GGG | + | chr3_2:31077748-31077767 | None:intergenic | 55.0% | |
| GGGAGAAATTTCAGGGGAGG+GGG | + | chr3_2:31077749-31077768 | None:intergenic | 55.0% | |
| GGGGAGAAATTTCAGGGGAG+GGG | + | chr3_2:31077750-31077769 | None:intergenic | 55.0% | |
| TCTGCTCCTCTCTAGGTCTC+AGG | - | chr3_2:31078162-31078181 | Msa0402710:intron | 55.0% | |
| !! | GCACTAGCTGGTCTTTGGGA+CGG | - | chr3_2:31078286-31078305 | Msa0402710:intron | 55.0% |
| ! | TTGTGCATTGGCACAACCCC+TGG | + | chr3_2:31079065-31079084 | None:intergenic | 55.0% |
| AGGGGTTGTGCCAATGCACA+AGG | - | chr3_2:31079064-31079083 | Msa0402710:intron | 55.0% | |
| GTCTGTGAGTTTGGAGGGGA+AGG | - | chr3_2:31079951-31079970 | Msa0402710:intron | 55.0% | |
| TGAGTTTGGAGGGGAAGGGA+GGG | - | chr3_2:31079956-31079975 | Msa0402710:intron | 55.0% | |
| AGGCCGACCTTTGGACAACT+TGG | - | chr3_2:31080568-31080587 | Msa0402710:intron | 55.0% | |
| TCCCGTGGAGCGTAGGATTA+AGG | - | chr3_2:31080894-31080913 | Msa0402710:intron | 55.0% | |
| CCCTTAATCCTACGCTCCAC+GGG | + | chr3_2:31080898-31080917 | None:intergenic | 55.0% | |
| CCCGTGGAGCGTAGGATTAA+GGG | - | chr3_2:31080895-31080914 | Msa0402710:intron | 55.0% | |
| GTGGAGCGTAGGATTAAGGG+TGG | - | chr3_2:31080898-31080917 | Msa0402710:intron | 55.0% | |
| AGGACAAGTGGAGGATCGGA+TGG | - | chr3_2:31081115-31081134 | Msa0402710:intron | 55.0% | |
| GGACAAGTGGAGGATCGGAT+GGG | - | chr3_2:31081116-31081135 | Msa0402710:intron | 55.0% | |
| GACAAGTGGAGGATCGGATG+GGG | - | chr3_2:31081117-31081136 | Msa0402710:intron | 55.0% | |
| ! | GATTCAGGCCTTGTCCAAGC+AGG | - | chr3_2:31081156-31081175 | Msa0402710:intron | 55.0% |
| GTCGGCATTAGAGGAAGCTC+AGG | - | chr3_2:31082342-31082361 | Msa0402710:CDS | 55.0% | |
| CATGACGTCTCATTTCCGGC+TGG | - | chr3_2:31082416-31082435 | Msa0402710:five_prime_UTR | 55.0% | |
| CCAGTCTCTCTCGTCGCAAA+TGG | + | chr3_2:31082489-31082508 | None:intergenic | 55.0% | |
| CCATTTGCGACGAGAGAGAC+TGG | - | chr3_2:31082486-31082505 | Msa0402710:five_prime_UTR | 55.0% | |
| AATTGAGCCCCCGCTAGTGG+AGG | - | chr3_2:31078252-31078271 | Msa0402710:intron | 60.0% | |
| ATTGAGCCCCCGCTAGTGGA+GGG | - | chr3_2:31078253-31078272 | Msa0402710:intron | 60.0% | |
| ACAATCCCGCCCTCCACTAG+CGG | + | chr3_2:31078265-31078284 | None:intergenic | 60.0% | |
| GGCGGGATTGTTGCACTAGC+TGG | - | chr3_2:31078274-31078293 | Msa0402710:intron | 60.0% | |
| GTGAGTTTGGAGGGGAAGGG+AGG | - | chr3_2:31079955-31079974 | Msa0402710:intron | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | - | chr3_2:31079957-31079976 | Msa0402710:intron | 60.0% | |
| !! | AGGGGAGGGCTTTGGGAAAC+AGG | - | chr3_2:31079975-31079994 | Msa0402710:intron | 60.0% |
| !!! | AGGGGAGGGGAGTGTTTTGG+GGG | + | chr3_2:31080203-31080222 | None:intergenic | 60.0% |
| !!! | GAGGGGAGGGGAGTGTTTTG+GGG | + | chr3_2:31080204-31080223 | None:intergenic | 60.0% |
| !!! | GGAGGGGAGGGGAGTGTTTT+GGG | + | chr3_2:31080205-31080224 | None:intergenic | 60.0% |
| !!! | TGGAGGGGAGGGGAGTGTTT+TGG | + | chr3_2:31080206-31080225 | None:intergenic | 60.0% |
| AATCCCGCCCTCCACTAGCG+GGG | + | chr3_2:31078263-31078282 | None:intergenic | 65.0% | |
| CAATCCCGCCCTCCACTAGC+GGG | + | chr3_2:31078264-31078283 | None:intergenic | 65.0% | |
| TTTGGAGGGGAAGGGAGGGG+AGG | - | chr3_2:31079960-31079979 | Msa0402710:intron | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+GGG | - | chr3_2:31079961-31079980 | Msa0402710:intron | 65.0% | |
| GGAAGGGAGGGGAGGGCTTT+GGG | - | chr3_2:31079968-31079987 | Msa0402710:intron | 65.0% | |
| ATCCCGCCCTCCACTAGCGG+GGG | + | chr3_2:31078262-31078281 | None:intergenic | 70.0% | |
| GGGAAGGGAGGGGAGGGCTT+TGG | - | chr3_2:31079967-31079986 | Msa0402710:intron | 70.0% | |
| GAGCCCCCGCTAGTGGAGGG+CGG | - | chr3_2:31078256-31078275 | Msa0402710:intron | 75.0% | |
| AGCCCCCGCTAGTGGAGGGC+GGG | - | chr3_2:31078257-31078276 | Msa0402710:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 31077611 | 31082675 | 31077611 | ID=Msa0402710;Name=Msa0402710 |
| chr3_2 | mRNA | 31077611 | 31082675 | 31077611 | ID=Msa0402710-mRNA-1;Parent=Msa0402710;Name=Msa0402710-mRNA-1;_AED=0.09;_eAED=0.09;_QI=277|1|1|1|1|1|8|255|274 |
| chr3_2 | exon | 31077611 | 31077991 | 31077611 | ID=Msa0402710-mRNA-1:exon:6239;Parent=Msa0402710-mRNA-1 |
| chr3_2 | exon | 31078642 | 31078755 | 31078642 | ID=Msa0402710-mRNA-1:exon:6238;Parent=Msa0402710-mRNA-1 |
| chr3_2 | exon | 31079109 | 31079185 | 31079109 | ID=Msa0402710-mRNA-1:exon:6237;Parent=Msa0402710-mRNA-1 |
| chr3_2 | exon | 31079265 | 31079401 | 31079265 | ID=Msa0402710-mRNA-1:exon:6236;Parent=Msa0402710-mRNA-1 |
| chr3_2 | exon | 31079638 | 31079744 | 31079638 | ID=Msa0402710-mRNA-1:exon:6235;Parent=Msa0402710-mRNA-1 |
| chr3_2 | exon | 31081021 | 31081107 | 31081021 | ID=Msa0402710-mRNA-1:exon:6234;Parent=Msa0402710-mRNA-1 |
| chr3_2 | exon | 31081201 | 31081269 | 31081201 | ID=Msa0402710-mRNA-1:exon:6233;Parent=Msa0402710-mRNA-1 |
| chr3_2 | exon | 31082291 | 31082675 | 31082291 | ID=Msa0402710-mRNA-1:exon:6232;Parent=Msa0402710-mRNA-1 |
| chr3_2 | five_prime_UTR | 31082399 | 31082675 | 31082399 | ID=Msa0402710-mRNA-1:five_prime_utr;Parent=Msa0402710-mRNA-1 |
| chr3_2 | CDS | 31082291 | 31082398 | 31082291 | ID=Msa0402710-mRNA-1:cds;Parent=Msa0402710-mRNA-1 |
| chr3_2 | CDS | 31081201 | 31081269 | 31081201 | ID=Msa0402710-mRNA-1:cds;Parent=Msa0402710-mRNA-1 |
| chr3_2 | CDS | 31081021 | 31081107 | 31081021 | ID=Msa0402710-mRNA-1:cds;Parent=Msa0402710-mRNA-1 |
| chr3_2 | CDS | 31079638 | 31079744 | 31079638 | ID=Msa0402710-mRNA-1:cds;Parent=Msa0402710-mRNA-1 |
| chr3_2 | CDS | 31079265 | 31079401 | 31079265 | ID=Msa0402710-mRNA-1:cds;Parent=Msa0402710-mRNA-1 |
| chr3_2 | CDS | 31079109 | 31079185 | 31079109 | ID=Msa0402710-mRNA-1:cds;Parent=Msa0402710-mRNA-1 |
| chr3_2 | CDS | 31078642 | 31078755 | 31078642 | ID=Msa0402710-mRNA-1:cds;Parent=Msa0402710-mRNA-1 |
| chr3_2 | CDS | 31077866 | 31077991 | 31077866 | ID=Msa0402710-mRNA-1:cds;Parent=Msa0402710-mRNA-1 |
| chr3_2 | three_prime_UTR | 31077611 | 31077865 | 31077611 | ID=Msa0402710-mRNA-1:three_prime_utr;Parent=Msa0402710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
