Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403250 | XP_013459502.1 | 97.770 | 269 | 6 | 0 | 1 | 269 | 1 | 269 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403250 | sp|J9U5U9|DAD2_PETHY | 39.231 | 260 | 157 | 1 | 6 | 265 | 3 | 261 | 2.40e-76 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403250 | A0A072UWT8 | 97.770 | 269 | 6 | 0 | 1 | 269 | 1 | 269 | 0.0 | 544 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0403250 | Msa0503070 | 0.839808 | 1.269403e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403250 | MtrunA17_Chr3g0093821 | 97.770 | 269 | 6 | 0 | 1 | 269 | 1 | 269 | 0.0 | 544 |
| Msa0403250 | MtrunA17_Chr6g0485021 | 62.738 | 263 | 97 | 1 | 8 | 269 | 17 | 279 | 3.15e-123 | 352 |
| Msa0403250 | MtrunA17_Chr1g0152551 | 37.308 | 260 | 161 | 2 | 7 | 265 | 5 | 263 | 3.94e-71 | 219 |
| Msa0403250 | MtrunA17_Chr5g0401521 | 38.367 | 245 | 149 | 2 | 13 | 256 | 9 | 252 | 2.06e-66 | 209 |
| Msa0403250 | MtrunA17_Chr4g0053741 | 39.286 | 196 | 118 | 1 | 62 | 256 | 6 | 201 | 5.95e-52 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403250 | AT3G24420.1 | 50.000 | 268 | 131 | 2 | 1 | 265 | 1 | 268 | 1.39e-102 | 300 |
| Msa0403250 | AT3G03990.1 | 38.314 | 261 | 160 | 1 | 5 | 265 | 3 | 262 | 7.21e-74 | 227 |
| Msa0403250 | AT4G37470.1 | 40.816 | 245 | 143 | 2 | 13 | 256 | 9 | 252 | 1.31e-69 | 216 |
Find 55 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAGCATAGGGCATTATT+TGG | 0.168365 | 3_2:-32809398 | Msa0403250:CDS |
| AAATAATGCCCTATGCTTAT+TGG | 0.181198 | 3_2:+32809400 | None:intergenic |
| TATTTGGATGAGAACATTAA+AGG | 0.265555 | 3_2:-32809382 | Msa0403250:CDS |
| TGACATAAAACTATTGTTTC+GGG | 0.281340 | 3_2:+32810638 | None:intergenic |
| ATGACATAAAACTATTGTTT+CGG | 0.322926 | 3_2:+32810637 | None:intergenic |
| TTGGAACAGACCAGTCTATA+TGG | 0.354404 | 3_2:-32810610 | Msa0403250:CDS |
| TCAACAGAGTCAGCATCATT+TGG | 0.359346 | 3_2:+32809568 | None:intergenic |
| ACAGTCTAGTTCTGTTTGAT+TGG | 0.364702 | 3_2:-32810556 | Msa0403250:CDS |
| TGATGAGTTAATCACTCTTA+TGG | 0.373825 | 3_2:-32810462 | Msa0403250:CDS |
| TTTCAGTGACTATAGAGATA+TGG | 0.378657 | 3_2:-32809479 | Msa0403250:CDS |
| TGAGGTGCTGAAGGGTATTG+TGG | 0.383521 | 3_2:-32809290 | Msa0403250:CDS |
| GCTTTCGTATTGAGACTCTA+TGG | 0.399369 | 3_2:+32809624 | None:intergenic |
| ATTTGGATGAGAACATTAAA+GGG | 0.399918 | 3_2:-32809381 | Msa0403250:CDS |
| TCTGTAATAGCTCCAGAAAA+TGG | 0.417553 | 3_2:+32810533 | None:intergenic |
| CATTAAAGGGGTGTCTACTT+TGG | 0.418244 | 3_2:-32809368 | Msa0403250:CDS |
| TCATTTGGATCCACTGCAAT+AGG | 0.424577 | 3_2:+32809583 | None:intergenic |
| AAAAGCCTGAGCTCTTTAAG+AGG | 0.425563 | 3_2:-32810364 | Msa0403250:CDS |
| TAGAGTCTCAATACGAAAGC+TGG | 0.436550 | 3_2:-32809621 | Msa0403250:CDS |
| CTCATCAGCATAAGGTTCAT+AGG | 0.436848 | 3_2:+32810478 | None:intergenic |
| CACTCTATGGCTGCTATGAT+AGG | 0.439746 | 3_2:-32810404 | Msa0403250:CDS |
| GAGGTGCTGAAGGGTATTGT+GGG | 0.441840 | 3_2:-32809289 | Msa0403250:CDS |
| ATAAATACAGATGACTATAA+AGG | 0.458026 | 3_2:-32809685 | Msa0403250:CDS |
| CTCAGTTAACTGCACACCTT+AGG | 0.466113 | 3_2:-32809318 | Msa0403250:CDS |
| CTATAGAGATATGGTTGAAA+AGG | 0.466254 | 3_2:-32809470 | Msa0403250:CDS |
| ATAATCCTCTTAAAGAGCTC+AGG | 0.466269 | 3_2:+32810359 | None:intergenic |
| TGTTTCGGGTCCTGAGCCTA+TGG | 0.470244 | 3_2:+32810652 | None:intergenic |
| GTGATTAACTCATCAGCATA+AGG | 0.495421 | 3_2:+32810470 | None:intergenic |
| AATCACTCTTATGGATGAGT+TGG | 0.497837 | 3_2:-32810453 | Msa0403250:CDS |
| CAACAAAAGTGATACATTTG+AGG | 0.498332 | 3_2:+32810429 | None:intergenic |
| GTGCAGTTAACTGAGGGAAA+TGG | 0.509673 | 3_2:+32809326 | None:intergenic |
| TAGGTTGGTTGAGGTGCTGA+AGG | 0.511480 | 3_2:-32809299 | Msa0403250:CDS |
| TGCACACCTTAGGTTGGTTG+AGG | 0.530851 | 3_2:-32809308 | Msa0403250:CDS |
| TTCTTCTATGTGCTTCCCCA+AGG | 0.546302 | 3_2:-32810337 | Msa0403250:intron |
| TTGGAGTTTATAGACATGAC+TGG | 0.548171 | 3_2:-32809349 | Msa0403250:CDS |
| AATGCAAGAACCATAGGCTC+AGG | 0.553052 | 3_2:-32810662 | Msa0403250:CDS |
| GAAAGCTGGGTTTCAGCATA+CGG | 0.556562 | 3_2:-32809607 | Msa0403250:CDS |
| TCTTTAAATGCAAGAACCAT+AGG | 0.556752 | 3_2:-32810668 | Msa0403250:CDS |
| GTGGCAGTTCCAATAAGCAT+AGG | 0.560917 | 3_2:-32809409 | Msa0403250:CDS |
| ACTTGACTGAATGATTGTGC+AGG | 0.563263 | 3_2:+32809438 | None:intergenic |
| AGCATACGGTCCTATTGCAG+TGG | 0.564652 | 3_2:-32809593 | Msa0403250:CDS |
| TTGCATTTAAAGATGTTGAG+AGG | 0.576785 | 3_2:+32810678 | None:intergenic |
| AGAGTCTCAATACGAAAGCT+GGG | 0.578249 | 3_2:-32809620 | Msa0403250:CDS |
| GTTAACTGCACACCTTAGGT+TGG | 0.578700 | 3_2:-32809314 | Msa0403250:CDS |
| AGGTTGGTTGAGGTGCTGAA+GGG | 0.578957 | 3_2:-32809298 | Msa0403250:CDS |
| TGGCAGTTCCAATAAGCATA+GGG | 0.586920 | 3_2:-32809408 | Msa0403250:CDS |
| TCAGCACCTCAACCAACCTA+AGG | 0.594081 | 3_2:+32809302 | None:intergenic |
| TTTGGATGAGAACATTAAAG+GGG | 0.595928 | 3_2:-32809380 | Msa0403250:CDS |
| CTTGACTGAATGATTGTGCA+GGG | 0.604202 | 3_2:+32809439 | None:intergenic |
| AATACAGATGACTATAAAGG+AGG | 0.635005 | 3_2:-32809682 | Msa0403250:CDS |
| CATTCAGTCAAGTAATGATG+TGG | 0.635222 | 3_2:-32809428 | Msa0403250:CDS |
| CTAAGGTGTGCAGTTAACTG+AGG | 0.643140 | 3_2:+32809319 | None:intergenic |
| TAAGGTGTGCAGTTAACTGA+GGG | 0.643687 | 3_2:+32809320 | None:intergenic |
| TGGTGAAGTTGCAATTACCT+TGG | 0.664064 | 3_2:-32809515 | Msa0403250:CDS |
| AAATGCTTGAAAAGAATGAG+TGG | 0.685359 | 3_2:-32809535 | Msa0403250:CDS |
| TTGACTGAATGATTGTGCAG+GGG | 0.705699 | 3_2:+32809440 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTGCATGATTATAA+AGG | + | chr3_2:32809482-32809501 | None:intergenic | 15.0% |
| !!! | TAGTATTTTTATAAAAAGAG+AGG | + | chr3_2:32809719-32809738 | None:intergenic | 15.0% |
| !!! | TATATTTTGCATGATTATAA+AGG | + | chr3_2:32809482-32809501 | None:intergenic | 15.0% |
| !!! | TAGTATTTTTATAAAAAGAG+AGG | + | chr3_2:32809719-32809738 | None:intergenic | 15.0% |
| !! | ATGACATAAAACTATTGTTT+CGG | + | chr3_2:32809349-32809368 | None:intergenic | 20.0% |
| !!! | AAACAATAGTTTTATGTCAT+GGG | - | chr3_2:32809349-32809368 | Msa0403250:CDS | 20.0% |
| !! | TATAAAAAGAGAGGAAAAAA+AGG | + | chr3_2:32809710-32809729 | None:intergenic | 20.0% |
| !! | CATTAGTTATTGACAAAAAT+CGG | + | chr3_2:32810057-32810076 | None:intergenic | 20.0% |
| !! | AAAACTAGAAATGCTAAAAA+GGG | - | chr3_2:32810175-32810194 | Msa0403250:intron | 20.0% |
| !! | TCCTATAATTATTCATACAT+AGG | - | chr3_2:32810272-32810291 | Msa0403250:intron | 20.0% |
| !! | ACCTATGTATGAATAATTAT+AGG | + | chr3_2:32810276-32810295 | None:intergenic | 20.0% |
| !! | ATAAATACAGATGACTATAA+AGG | - | chr3_2:32810298-32810317 | Msa0403250:intron | 20.0% |
| !! | ATGACATAAAACTATTGTTT+CGG | + | chr3_2:32809349-32809368 | None:intergenic | 20.0% |
| !!! | AAACAATAGTTTTATGTCAT+GGG | - | chr3_2:32809349-32809368 | Msa0403250:CDS | 20.0% |
| !! | TATAAAAAGAGAGGAAAAAA+AGG | + | chr3_2:32809710-32809729 | None:intergenic | 20.0% |
| !! | CATTAGTTATTGACAAAAAT+CGG | + | chr3_2:32810057-32810076 | None:intergenic | 20.0% |
| !! | AAAACTAGAAATGCTAAAAA+GGG | - | chr3_2:32810175-32810194 | Msa0403250:intron | 20.0% |
| !! | TCCTATAATTATTCATACAT+AGG | - | chr3_2:32810272-32810291 | Msa0403250:intron | 20.0% |
| !! | ACCTATGTATGAATAATTAT+AGG | + | chr3_2:32810276-32810295 | None:intergenic | 20.0% |
| !! | ATAAATACAGATGACTATAA+AGG | - | chr3_2:32810298-32810317 | Msa0403250:intron | 20.0% |
| ! | TGACATAAAACTATTGTTTC+GGG | + | chr3_2:32809348-32809367 | None:intergenic | 25.0% |
| !!! | GAAACAATAGTTTTATGTCA+TGG | - | chr3_2:32809348-32809367 | Msa0403250:CDS | 25.0% |
| !! | CAATTTTATTCCATATAGAC+TGG | + | chr3_2:32809386-32809405 | None:intergenic | 25.0% |
| !! | CAACATTAGAGAGTATATAT+AGG | + | chr3_2:32809686-32809705 | None:intergenic | 25.0% |
| ! | TGTTGAAACACTTGATTATT+TGG | - | chr3_2:32809766-32809785 | Msa0403250:intron | 25.0% |
| ! | TGACACTAGTAAAAATATGA+AGG | - | chr3_2:32809868-32809887 | Msa0403250:intron | 25.0% |
| !!! | TTTTAGCATTTCTAGTTTTG+TGG | + | chr3_2:32810174-32810193 | None:intergenic | 25.0% |
| ! | CAAAACTAGAAATGCTAAAA+AGG | - | chr3_2:32810174-32810193 | Msa0403250:intron | 25.0% |
| ! | AAAAAAGTGATTTATCGAGT+TGG | + | chr3_2:32810202-32810221 | None:intergenic | 25.0% |
| ! | TATTTGGATGAGAACATTAA+AGG | - | chr3_2:32810601-32810620 | Msa0403250:CDS | 25.0% |
| ! | ATTTGGATGAGAACATTAAA+GGG | - | chr3_2:32810602-32810621 | Msa0403250:CDS | 25.0% |
| ! | TGACATAAAACTATTGTTTC+GGG | + | chr3_2:32809348-32809367 | None:intergenic | 25.0% |
| !!! | GAAACAATAGTTTTATGTCA+TGG | - | chr3_2:32809348-32809367 | Msa0403250:CDS | 25.0% |
| !! | CAATTTTATTCCATATAGAC+TGG | + | chr3_2:32809386-32809405 | None:intergenic | 25.0% |
| !! | CAACATTAGAGAGTATATAT+AGG | + | chr3_2:32809686-32809705 | None:intergenic | 25.0% |
| ! | TGTTGAAACACTTGATTATT+TGG | - | chr3_2:32809766-32809785 | Msa0403250:intron | 25.0% |
| ! | TGACACTAGTAAAAATATGA+AGG | - | chr3_2:32809868-32809887 | Msa0403250:intron | 25.0% |
| !!! | TTTTAGCATTTCTAGTTTTG+TGG | + | chr3_2:32810174-32810193 | None:intergenic | 25.0% |
| ! | CAAAACTAGAAATGCTAAAA+AGG | - | chr3_2:32810174-32810193 | Msa0403250:intron | 25.0% |
| ! | AAAAAAGTGATTTATCGAGT+TGG | + | chr3_2:32810202-32810221 | None:intergenic | 25.0% |
| ! | TATTTGGATGAGAACATTAA+AGG | - | chr3_2:32810601-32810620 | Msa0403250:CDS | 25.0% |
| ! | ATTTGGATGAGAACATTAAA+GGG | - | chr3_2:32810602-32810621 | Msa0403250:CDS | 25.0% |
| TTGCATTTAAAGATGTTGAG+AGG | + | chr3_2:32809308-32809327 | None:intergenic | 30.0% | |
| TCTTTAAATGCAAGAACCAT+AGG | - | chr3_2:32809315-32809334 | Msa0403250:CDS | 30.0% | |
| !!! | ATAGTTTTATGTCATGGGTT+TGG | - | chr3_2:32809354-32809373 | Msa0403250:CDS | 30.0% |
| ! | CTGTAATTTTCAGCTAAAAG+AGG | + | chr3_2:32809411-32809430 | None:intergenic | 30.0% |
| TGATGAGTTAATCACTCTTA+TGG | - | chr3_2:32809521-32809540 | Msa0403250:CDS | 30.0% | |
| CAACAAAAGTGATACATTTG+AGG | + | chr3_2:32809557-32809576 | None:intergenic | 30.0% | |
| GTGAAATCTCATAGTGTATT+TGG | - | chr3_2:32809788-32809807 | Msa0403250:intron | 30.0% | |
| CATGAATATCAGATAAGACA+CGG | - | chr3_2:32809833-32809852 | Msa0403250:intron | 30.0% | |
| TAGTTATTGACAAAAATCGG+CGG | + | chr3_2:32810054-32810073 | None:intergenic | 30.0% | |
| GATAGAAAAACATAGTTGTG+AGG | + | chr3_2:32810121-32810140 | None:intergenic | 30.0% | |
| ! | TTTTGTGGAAGGACAAAAAT+AGG | + | chr3_2:32810159-32810178 | None:intergenic | 30.0% |
| !!! | ACTTTTTTTTTTCCTAGCCT+AGG | - | chr3_2:32810214-32810233 | Msa0403250:intron | 30.0% |
| AATACAGATGACTATAAAGG+AGG | - | chr3_2:32810301-32810320 | Msa0403250:intron | 30.0% | |
| AAATGCTTGAAAAGAATGAG+TGG | - | chr3_2:32810448-32810467 | Msa0403250:CDS | 30.0% | |
| TTTCAGTGACTATAGAGATA+TGG | - | chr3_2:32810504-32810523 | Msa0403250:CDS | 30.0% | |
| CTATAGAGATATGGTTGAAA+AGG | - | chr3_2:32810513-32810532 | Msa0403250:CDS | 30.0% | |
| AAATAATGCCCTATGCTTAT+TGG | + | chr3_2:32810586-32810605 | None:intergenic | 30.0% | |
| ! | AATAAGCATAGGGCATTATT+TGG | - | chr3_2:32810585-32810604 | Msa0403250:CDS | 30.0% |
| TTTGGATGAGAACATTAAAG+GGG | - | chr3_2:32810603-32810622 | Msa0403250:CDS | 30.0% | |
| TTGCATTTAAAGATGTTGAG+AGG | + | chr3_2:32809308-32809327 | None:intergenic | 30.0% | |
| TCTTTAAATGCAAGAACCAT+AGG | - | chr3_2:32809315-32809334 | Msa0403250:CDS | 30.0% | |
| !!! | ATAGTTTTATGTCATGGGTT+TGG | - | chr3_2:32809354-32809373 | Msa0403250:CDS | 30.0% |
| ! | CTGTAATTTTCAGCTAAAAG+AGG | + | chr3_2:32809411-32809430 | None:intergenic | 30.0% |
| TGATGAGTTAATCACTCTTA+TGG | - | chr3_2:32809521-32809540 | Msa0403250:CDS | 30.0% | |
| CAACAAAAGTGATACATTTG+AGG | + | chr3_2:32809557-32809576 | None:intergenic | 30.0% | |
| GTGAAATCTCATAGTGTATT+TGG | - | chr3_2:32809788-32809807 | Msa0403250:intron | 30.0% | |
| CATGAATATCAGATAAGACA+CGG | - | chr3_2:32809833-32809852 | Msa0403250:intron | 30.0% | |
| TAGTTATTGACAAAAATCGG+CGG | + | chr3_2:32810054-32810073 | None:intergenic | 30.0% | |
| GATAGAAAAACATAGTTGTG+AGG | + | chr3_2:32810121-32810140 | None:intergenic | 30.0% | |
| ! | TTTTGTGGAAGGACAAAAAT+AGG | + | chr3_2:32810159-32810178 | None:intergenic | 30.0% |
| !!! | ACTTTTTTTTTTCCTAGCCT+AGG | - | chr3_2:32810214-32810233 | Msa0403250:intron | 30.0% |
| AATACAGATGACTATAAAGG+AGG | - | chr3_2:32810301-32810320 | Msa0403250:intron | 30.0% | |
| AAATGCTTGAAAAGAATGAG+TGG | - | chr3_2:32810448-32810467 | Msa0403250:CDS | 30.0% | |
| TTTCAGTGACTATAGAGATA+TGG | - | chr3_2:32810504-32810523 | Msa0403250:CDS | 30.0% | |
| CTATAGAGATATGGTTGAAA+AGG | - | chr3_2:32810513-32810532 | Msa0403250:CDS | 30.0% | |
| AAATAATGCCCTATGCTTAT+TGG | + | chr3_2:32810586-32810605 | None:intergenic | 30.0% | |
| ! | AATAAGCATAGGGCATTATT+TGG | - | chr3_2:32810585-32810604 | Msa0403250:CDS | 30.0% |
| TTTGGATGAGAACATTAAAG+GGG | - | chr3_2:32810603-32810622 | Msa0403250:CDS | 30.0% | |
| !! | ACAGTCTAGTTCTGTTTGAT+TGG | - | chr3_2:32809427-32809446 | Msa0403250:CDS | 35.0% |
| TCTGTAATAGCTCCAGAAAA+TGG | + | chr3_2:32809453-32809472 | None:intergenic | 35.0% | |
| GTGATTAACTCATCAGCATA+AGG | + | chr3_2:32809516-32809535 | None:intergenic | 35.0% | |
| AATCACTCTTATGGATGAGT+TGG | - | chr3_2:32809530-32809549 | Msa0403250:CDS | 35.0% | |
| ! | CACTTTTGTTGATCACTCTA+TGG | - | chr3_2:32809566-32809585 | Msa0403250:CDS | 35.0% |
| ! | AAAGAGCTCAGGCTTTTTAA+TGG | + | chr3_2:32809616-32809635 | None:intergenic | 35.0% |
| ATAATCCTCTTAAAGAGCTC+AGG | + | chr3_2:32809627-32809646 | None:intergenic | 35.0% | |
| GTCACTAACCATCTTAAAAG+TGG | - | chr3_2:32810090-32810109 | Msa0403250:intron | 35.0% | |
| !!! | AGCATTTCTAGTTTTGTGGA+AGG | + | chr3_2:32810170-32810189 | None:intergenic | 35.0% |
| ! | GTCACTGAAAAACACAGTTT+TGG | + | chr3_2:32810494-32810513 | None:intergenic | 35.0% |
| CATTCAGTCAAGTAATGATG+TGG | - | chr3_2:32810555-32810574 | Msa0403250:CDS | 35.0% | |
| TTGGAGTTTATAGACATGAC+TGG | - | chr3_2:32810634-32810653 | Msa0403250:CDS | 35.0% | |
| !! | ACAGTCTAGTTCTGTTTGAT+TGG | - | chr3_2:32809427-32809446 | Msa0403250:CDS | 35.0% |
| TCTGTAATAGCTCCAGAAAA+TGG | + | chr3_2:32809453-32809472 | None:intergenic | 35.0% | |
| GTGATTAACTCATCAGCATA+AGG | + | chr3_2:32809516-32809535 | None:intergenic | 35.0% | |
| AATCACTCTTATGGATGAGT+TGG | - | chr3_2:32809530-32809549 | Msa0403250:CDS | 35.0% | |
| ! | CACTTTTGTTGATCACTCTA+TGG | - | chr3_2:32809566-32809585 | Msa0403250:CDS | 35.0% |
| ! | AAAGAGCTCAGGCTTTTTAA+TGG | + | chr3_2:32809616-32809635 | None:intergenic | 35.0% |
| ATAATCCTCTTAAAGAGCTC+AGG | + | chr3_2:32809627-32809646 | None:intergenic | 35.0% | |
| GTCACTAACCATCTTAAAAG+TGG | - | chr3_2:32810090-32810109 | Msa0403250:intron | 35.0% | |
| !!! | AGCATTTCTAGTTTTGTGGA+AGG | + | chr3_2:32810170-32810189 | None:intergenic | 35.0% |
| ! | GTCACTGAAAAACACAGTTT+TGG | + | chr3_2:32810494-32810513 | None:intergenic | 35.0% |
| CATTCAGTCAAGTAATGATG+TGG | - | chr3_2:32810555-32810574 | Msa0403250:CDS | 35.0% | |
| TTGGAGTTTATAGACATGAC+TGG | - | chr3_2:32810634-32810653 | Msa0403250:CDS | 35.0% | |
| !!! | GATGTTGAGAGGCTCTTTTT+TGG | + | chr3_2:32809297-32809316 | None:intergenic | 40.0% |
| TTGGAACAGACCAGTCTATA+TGG | - | chr3_2:32809373-32809392 | Msa0403250:CDS | 40.0% | |
| !! | CTGTTTGATTGGCCATTTTC+TGG | - | chr3_2:32809438-32809457 | Msa0403250:CDS | 40.0% |
| CTCATCAGCATAAGGTTCAT+AGG | + | chr3_2:32809508-32809527 | None:intergenic | 40.0% | |
| AAAAGCCTGAGCTCTTTAAG+AGG | - | chr3_2:32809619-32809638 | Msa0403250:CDS | 40.0% | |
| !! | GTAAAGATGAGAGTACCTTG+GGG | + | chr3_2:32809664-32809683 | None:intergenic | 40.0% |
| !! | GGTAAAGATGAGAGTACCTT+GGG | + | chr3_2:32809665-32809684 | None:intergenic | 40.0% |
| !! | AGGTAAAGATGAGAGTACCT+TGG | + | chr3_2:32809666-32809685 | None:intergenic | 40.0% |
| !! | AGGAGAGACCACTTTTAAGA+TGG | + | chr3_2:32810101-32810120 | None:intergenic | 40.0% |
| AAATAGGTGCACTTGTGTTG+TGG | + | chr3_2:32810143-32810162 | None:intergenic | 40.0% | |
| !! | TCAAATGTTTGAGTTGGCCT+AGG | + | chr3_2:32810234-32810253 | None:intergenic | 40.0% |
| AGGCCAACTCAAACATTTGA+TGG | - | chr3_2:32810234-32810253 | Msa0403250:intron | 40.0% | |
| CCTCCATCAAATGTTTGAGT+TGG | + | chr3_2:32810240-32810259 | None:intergenic | 40.0% | |
| CCAACTCAAACATTTGATGG+AGG | - | chr3_2:32810237-32810256 | Msa0403250:intron | 40.0% | |
| GCTTTCGTATTGAGACTCTA+TGG | + | chr3_2:32810362-32810381 | None:intergenic | 40.0% | |
| TAGAGTCTCAATACGAAAGC+TGG | - | chr3_2:32810362-32810381 | Msa0403250:CDS | 40.0% | |
| AGAGTCTCAATACGAAAGCT+GGG | - | chr3_2:32810363-32810382 | Msa0403250:CDS | 40.0% | |
| TCATTTGGATCCACTGCAAT+AGG | + | chr3_2:32810403-32810422 | None:intergenic | 40.0% | |
| TCAACAGAGTCAGCATCATT+TGG | + | chr3_2:32810418-32810437 | None:intergenic | 40.0% | |
| TGGTGAAGTTGCAATTACCT+TGG | - | chr3_2:32810468-32810487 | Msa0403250:CDS | 40.0% | |
| !! | GAAAAACACAGTTTTGGCCA+AGG | + | chr3_2:32810488-32810507 | None:intergenic | 40.0% |
| TTGACTGAATGATTGTGCAG+GGG | + | chr3_2:32810546-32810565 | None:intergenic | 40.0% | |
| CTTGACTGAATGATTGTGCA+GGG | + | chr3_2:32810547-32810566 | None:intergenic | 40.0% | |
| ACTTGACTGAATGATTGTGC+AGG | + | chr3_2:32810548-32810567 | None:intergenic | 40.0% | |
| TGGCAGTTCCAATAAGCATA+GGG | - | chr3_2:32810575-32810594 | Msa0403250:CDS | 40.0% | |
| !! | CATTAAAGGGGTGTCTACTT+TGG | - | chr3_2:32810615-32810634 | Msa0403250:CDS | 40.0% |
| TAAGGTGTGCAGTTAACTGA+GGG | + | chr3_2:32810666-32810685 | None:intergenic | 40.0% | |
| !!! | GATGTTGAGAGGCTCTTTTT+TGG | + | chr3_2:32809297-32809316 | None:intergenic | 40.0% |
| TTGGAACAGACCAGTCTATA+TGG | - | chr3_2:32809373-32809392 | Msa0403250:CDS | 40.0% | |
| !! | CTGTTTGATTGGCCATTTTC+TGG | - | chr3_2:32809438-32809457 | Msa0403250:CDS | 40.0% |
| CTCATCAGCATAAGGTTCAT+AGG | + | chr3_2:32809508-32809527 | None:intergenic | 40.0% | |
| AAAAGCCTGAGCTCTTTAAG+AGG | - | chr3_2:32809619-32809638 | Msa0403250:CDS | 40.0% | |
| !! | GTAAAGATGAGAGTACCTTG+GGG | + | chr3_2:32809664-32809683 | None:intergenic | 40.0% |
| !! | GGTAAAGATGAGAGTACCTT+GGG | + | chr3_2:32809665-32809684 | None:intergenic | 40.0% |
| !! | AGGTAAAGATGAGAGTACCT+TGG | + | chr3_2:32809666-32809685 | None:intergenic | 40.0% |
| !! | AGGAGAGACCACTTTTAAGA+TGG | + | chr3_2:32810101-32810120 | None:intergenic | 40.0% |
| AAATAGGTGCACTTGTGTTG+TGG | + | chr3_2:32810143-32810162 | None:intergenic | 40.0% | |
| !! | TCAAATGTTTGAGTTGGCCT+AGG | + | chr3_2:32810234-32810253 | None:intergenic | 40.0% |
| AGGCCAACTCAAACATTTGA+TGG | - | chr3_2:32810234-32810253 | Msa0403250:intron | 40.0% | |
| CCTCCATCAAATGTTTGAGT+TGG | + | chr3_2:32810240-32810259 | None:intergenic | 40.0% | |
| CCAACTCAAACATTTGATGG+AGG | - | chr3_2:32810237-32810256 | Msa0403250:intron | 40.0% | |
| GCTTTCGTATTGAGACTCTA+TGG | + | chr3_2:32810362-32810381 | None:intergenic | 40.0% | |
| TAGAGTCTCAATACGAAAGC+TGG | - | chr3_2:32810362-32810381 | Msa0403250:CDS | 40.0% | |
| AGAGTCTCAATACGAAAGCT+GGG | - | chr3_2:32810363-32810382 | Msa0403250:CDS | 40.0% | |
| TCATTTGGATCCACTGCAAT+AGG | + | chr3_2:32810403-32810422 | None:intergenic | 40.0% | |
| TCAACAGAGTCAGCATCATT+TGG | + | chr3_2:32810418-32810437 | None:intergenic | 40.0% | |
| TGGTGAAGTTGCAATTACCT+TGG | - | chr3_2:32810468-32810487 | Msa0403250:CDS | 40.0% | |
| !! | GAAAAACACAGTTTTGGCCA+AGG | + | chr3_2:32810488-32810507 | None:intergenic | 40.0% |
| TTGACTGAATGATTGTGCAG+GGG | + | chr3_2:32810546-32810565 | None:intergenic | 40.0% | |
| CTTGACTGAATGATTGTGCA+GGG | + | chr3_2:32810547-32810566 | None:intergenic | 40.0% | |
| ACTTGACTGAATGATTGTGC+AGG | + | chr3_2:32810548-32810567 | None:intergenic | 40.0% | |
| TGGCAGTTCCAATAAGCATA+GGG | - | chr3_2:32810575-32810594 | Msa0403250:CDS | 40.0% | |
| !! | CATTAAAGGGGTGTCTACTT+TGG | - | chr3_2:32810615-32810634 | Msa0403250:CDS | 40.0% |
| TAAGGTGTGCAGTTAACTGA+GGG | + | chr3_2:32810666-32810685 | None:intergenic | 40.0% | |
| AATGCAAGAACCATAGGCTC+AGG | - | chr3_2:32809321-32809340 | Msa0403250:CDS | 45.0% | |
| CACTCTATGGCTGCTATGAT+AGG | - | chr3_2:32809579-32809598 | Msa0403250:CDS | 45.0% | |
| ! | GAGCTCAGGCTTTTTAATGG+AGG | + | chr3_2:32809613-32809632 | None:intergenic | 45.0% |
| TTCTTCTATGTGCTTCCCCA+AGG | - | chr3_2:32809646-32809665 | Msa0403250:CDS | 45.0% | |
| CATGTGTTACCGACACATGT+CGG | - | chr3_2:32809922-32809941 | Msa0403250:intron | 45.0% | |
| ! | ACACTTTCCACCAGAAGTGT+CGG | - | chr3_2:32809954-32809973 | Msa0403250:intron | 45.0% |
| GAAAGCTGGGTTTCAGCATA+CGG | - | chr3_2:32810376-32810395 | Msa0403250:CDS | 45.0% | |
| GTGGCAGTTCCAATAAGCAT+AGG | - | chr3_2:32810574-32810593 | Msa0403250:CDS | 45.0% | |
| GTGCAGTTAACTGAGGGAAA+TGG | + | chr3_2:32810660-32810679 | None:intergenic | 45.0% | |
| CTAAGGTGTGCAGTTAACTG+AGG | + | chr3_2:32810667-32810686 | None:intergenic | 45.0% | |
| CTCAGTTAACTGCACACCTT+AGG | - | chr3_2:32810665-32810684 | Msa0403250:CDS | 45.0% | |
| GTTAACTGCACACCTTAGGT+TGG | - | chr3_2:32810669-32810688 | Msa0403250:CDS | 45.0% | |
| AATGCAAGAACCATAGGCTC+AGG | - | chr3_2:32809321-32809340 | Msa0403250:CDS | 45.0% | |
| CACTCTATGGCTGCTATGAT+AGG | - | chr3_2:32809579-32809598 | Msa0403250:CDS | 45.0% | |
| ! | GAGCTCAGGCTTTTTAATGG+AGG | + | chr3_2:32809613-32809632 | None:intergenic | 45.0% |
| TTCTTCTATGTGCTTCCCCA+AGG | - | chr3_2:32809646-32809665 | Msa0403250:CDS | 45.0% | |
| CATGTGTTACCGACACATGT+CGG | - | chr3_2:32809922-32809941 | Msa0403250:intron | 45.0% | |
| ! | ACACTTTCCACCAGAAGTGT+CGG | - | chr3_2:32809954-32809973 | Msa0403250:intron | 45.0% |
| GAAAGCTGGGTTTCAGCATA+CGG | - | chr3_2:32810376-32810395 | Msa0403250:CDS | 45.0% | |
| GTGGCAGTTCCAATAAGCAT+AGG | - | chr3_2:32810574-32810593 | Msa0403250:CDS | 45.0% | |
| GTGCAGTTAACTGAGGGAAA+TGG | + | chr3_2:32810660-32810679 | None:intergenic | 45.0% | |
| CTAAGGTGTGCAGTTAACTG+AGG | + | chr3_2:32810667-32810686 | None:intergenic | 45.0% | |
| CTCAGTTAACTGCACACCTT+AGG | - | chr3_2:32810665-32810684 | Msa0403250:CDS | 45.0% | |
| GTTAACTGCACACCTTAGGT+TGG | - | chr3_2:32810669-32810688 | Msa0403250:CDS | 45.0% | |
| ! | CTTCTGGTGGAAAGTGTGTC+TGG | + | chr3_2:32809951-32809970 | None:intergenic | 50.0% |
| !! | GTGTCGGTGCTACAGAGATT+TGG | - | chr3_2:32809970-32809989 | Msa0403250:intron | 50.0% |
| !! | TGTTTGAGTTGGCCTAGGCT+AGG | + | chr3_2:32810229-32810248 | None:intergenic | 50.0% |
| AGCATACGGTCCTATTGCAG+TGG | - | chr3_2:32810390-32810409 | Msa0403250:CDS | 50.0% | |
| !! | TGCACACCTTAGGTTGGTTG+AGG | - | chr3_2:32810675-32810694 | Msa0403250:CDS | 50.0% |
| TCAGCACCTCAACCAACCTA+AGG | + | chr3_2:32810684-32810703 | None:intergenic | 50.0% | |
| !! | TAGGTTGGTTGAGGTGCTGA+AGG | - | chr3_2:32810684-32810703 | Msa0403250:CDS | 50.0% |
| !! | AGGTTGGTTGAGGTGCTGAA+GGG | - | chr3_2:32810685-32810704 | Msa0403250:CDS | 50.0% |
| !! | TGAGGTGCTGAAGGGTATTG+TGG | - | chr3_2:32810693-32810712 | Msa0403250:CDS | 50.0% |
| !! | GAGGTGCTGAAGGGTATTGT+GGG | - | chr3_2:32810694-32810713 | Msa0403250:CDS | 50.0% |
| ! | CTTCTGGTGGAAAGTGTGTC+TGG | + | chr3_2:32809951-32809970 | None:intergenic | 50.0% |
| !! | GTGTCGGTGCTACAGAGATT+TGG | - | chr3_2:32809970-32809989 | Msa0403250:intron | 50.0% |
| !! | TGTTTGAGTTGGCCTAGGCT+AGG | + | chr3_2:32810229-32810248 | None:intergenic | 50.0% |
| AGCATACGGTCCTATTGCAG+TGG | - | chr3_2:32810390-32810409 | Msa0403250:CDS | 50.0% | |
| !! | TGCACACCTTAGGTTGGTTG+AGG | - | chr3_2:32810675-32810694 | Msa0403250:CDS | 50.0% |
| TCAGCACCTCAACCAACCTA+AGG | + | chr3_2:32810684-32810703 | None:intergenic | 50.0% | |
| !! | TAGGTTGGTTGAGGTGCTGA+AGG | - | chr3_2:32810684-32810703 | Msa0403250:CDS | 50.0% |
| !! | AGGTTGGTTGAGGTGCTGAA+GGG | - | chr3_2:32810685-32810704 | Msa0403250:CDS | 50.0% |
| !! | TGAGGTGCTGAAGGGTATTG+TGG | - | chr3_2:32810693-32810712 | Msa0403250:CDS | 50.0% |
| !! | GAGGTGCTGAAGGGTATTGT+GGG | - | chr3_2:32810694-32810713 | Msa0403250:CDS | 50.0% |
| ! | TGTTTCGGGTCCTGAGCCTA+TGG | + | chr3_2:32809334-32809353 | None:intergenic | 55.0% |
| GTCTGGTGTCCGACATGTGT+CGG | + | chr3_2:32809934-32809953 | None:intergenic | 55.0% | |
| !! | TGTAGCACCGACACTTCTGG+TGG | + | chr3_2:32809964-32809983 | None:intergenic | 55.0% |
| !! | CTCTGTAGCACCGACACTTC+TGG | + | chr3_2:32809967-32809986 | None:intergenic | 55.0% |
| ! | TGTTTCGGGTCCTGAGCCTA+TGG | + | chr3_2:32809334-32809353 | None:intergenic | 55.0% |
| GTCTGGTGTCCGACATGTGT+CGG | + | chr3_2:32809934-32809953 | None:intergenic | 55.0% | |
| !! | TGTAGCACCGACACTTCTGG+TGG | + | chr3_2:32809964-32809983 | None:intergenic | 55.0% |
| !! | CTCTGTAGCACCGACACTTC+TGG | + | chr3_2:32809967-32809986 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 32809285 | 32810720 | 32809285 | ID=Msa0403250;Name=Msa0403250 |
| chr3_2 | mRNA | 32809285 | 32810720 | 32809285 | ID=Msa0403250-mRNA-1;Parent=Msa0403250;Name=Msa0403250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|269 |
| chr3_2 | exon | 32810338 | 32810720 | 32810338 | ID=Msa0403250-mRNA-1:exon:6511;Parent=Msa0403250-mRNA-1 |
| chr3_2 | exon | 32809285 | 32809711 | 32809285 | ID=Msa0403250-mRNA-1:exon:6510;Parent=Msa0403250-mRNA-1 |
| chr3_2 | CDS | 32810338 | 32810720 | 32810338 | ID=Msa0403250-mRNA-1:cds;Parent=Msa0403250-mRNA-1 |
| chr3_2 | CDS | 32809285 | 32809711 | 32809285 | ID=Msa0403250-mRNA-1:cds;Parent=Msa0403250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
