Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503070 | XP_013459502.1 | 97.398 | 269 | 7 | 0 | 1 | 269 | 1 | 269 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503070 | sp|J9U5U9|DAD2_PETHY | 38.846 | 260 | 158 | 1 | 6 | 265 | 3 | 261 | 1.13e-76 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503070 | A0A072UWT8 | 97.398 | 269 | 7 | 0 | 1 | 269 | 1 | 269 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0403250 | Msa0503070 | 0.839808 | 1.269403e-57 | -8.615850e-47 |
| Msa0357110 | Msa0503070 | 0.811007 | 8.681573e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503070 | MtrunA17_Chr3g0093821 | 97.398 | 269 | 7 | 0 | 1 | 269 | 1 | 269 | 0.0 | 543 |
| Msa0503070 | MtrunA17_Chr6g0485021 | 63.498 | 263 | 95 | 1 | 8 | 269 | 17 | 279 | 2.12e-125 | 358 |
| Msa0503070 | MtrunA17_Chr1g0152551 | 37.308 | 260 | 161 | 2 | 7 | 265 | 5 | 263 | 3.58e-72 | 222 |
| Msa0503070 | MtrunA17_Chr5g0401521 | 38.776 | 245 | 148 | 2 | 13 | 256 | 9 | 252 | 7.27e-68 | 212 |
| Msa0503070 | MtrunA17_Chr4g0053741 | 39.286 | 196 | 118 | 1 | 62 | 256 | 6 | 201 | 7.88e-53 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503070 | AT3G24420.1 | 49.077 | 271 | 135 | 2 | 1 | 268 | 1 | 271 | 1.22e-102 | 300 |
| Msa0503070 | AT3G03990.1 | 39.080 | 261 | 158 | 1 | 5 | 265 | 3 | 262 | 2.88e-76 | 233 |
| Msa0503070 | AT4G37470.1 | 41.224 | 245 | 142 | 2 | 13 | 256 | 9 | 252 | 1.79e-70 | 218 |
Find 54 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAGCATAGGGCATTATT+TGG | 0.168365 | 3_4:+45976622 | Msa0503070:CDS |
| AAATAATGCCCTATGCTTAT+TGG | 0.181198 | 3_4:-45976620 | None:intergenic |
| TATTTGGATGAGAACATTAA+AGG | 0.265555 | 3_4:+45976638 | Msa0503070:CDS |
| TGACATAAAACTATTGTTTC+GGG | 0.281340 | 3_4:-45975305 | None:intergenic |
| ATGACATAAAACTATTGTTT+CGG | 0.322926 | 3_4:-45975306 | None:intergenic |
| TTGGAACAGACCAGTCTATA+TGG | 0.354404 | 3_4:+45975333 | Msa0503070:CDS |
| TCAACAGAGTCAGCATCATT+TGG | 0.359346 | 3_4:-45976452 | None:intergenic |
| ACAGTCTAGTTCTGTTTGAT+TGG | 0.364702 | 3_4:+45975387 | Msa0503070:CDS |
| TTTCAGTGACTATAGAGATA+TGG | 0.378657 | 3_4:+45976541 | Msa0503070:CDS |
| TGAGGTGCTGAAGGGTATTG+TGG | 0.383521 | 3_4:+45976730 | Msa0503070:CDS |
| GCTTTCGTATTGAGACTCTA+TGG | 0.399369 | 3_4:-45976396 | None:intergenic |
| ATTTGGATGAGAACATTAAA+GGG | 0.399918 | 3_4:+45976639 | Msa0503070:CDS |
| TCTGTAATAGCTCCAGAAAA+TGG | 0.417553 | 3_4:-45975410 | None:intergenic |
| CATTAAAGGGGTGTCTACTT+TGG | 0.418244 | 3_4:+45976652 | Msa0503070:CDS |
| TCATTTGGATCCACTGCAAT+AGG | 0.424577 | 3_4:-45976437 | None:intergenic |
| AAAAGCCTGAGCTCTTTAAG+AGG | 0.425563 | 3_4:+45975579 | Msa0503070:CDS |
| CACTCTATGGCTGCTATGAT+AGG | 0.427614 | 3_4:+45975539 | Msa0503070:CDS |
| TAGAGTCTCAATACGAAAGC+TGG | 0.436550 | 3_4:+45976399 | Msa0503070:CDS |
| CTCATCAGCATAAGGTTCAT+AGG | 0.436848 | 3_4:-45975465 | None:intergenic |
| GAGGTGCTGAAGGGTATTGT+GGG | 0.441840 | 3_4:+45976731 | Msa0503070:CDS |
| ATAAATACAGATGACTATAA+AGG | 0.458026 | 3_4:+45976335 | Msa0503070:CDS |
| TGTTTCGGGTCCTGTGCCTA+TGG | 0.460018 | 3_4:-45975291 | None:intergenic |
| CTCAGTTAACTGCACACCTT+AGG | 0.466113 | 3_4:+45976702 | Msa0503070:CDS |
| CTATAGAGATATGGTTGAAA+AGG | 0.466254 | 3_4:+45976550 | Msa0503070:CDS |
| ACAATCCTCTTAAAGAGCTC+AGG | 0.466269 | 3_4:-45975584 | None:intergenic |
| AATCACTCTTATAGATGAGT+TGG | 0.482159 | 3_4:+45975490 | Msa0503070:CDS |
| TTCTTCTTTGTGCTTCCCCA+AGG | 0.483467 | 3_4:+45975606 | Msa0503070:CDS |
| GTGATTAACTCATCAGCATA+AGG | 0.495421 | 3_4:-45975473 | None:intergenic |
| CAACAAAAGTGATACATTTG+AGG | 0.498332 | 3_4:-45975514 | None:intergenic |
| GTGCAGTTAACTGAGGGAAA+TGG | 0.509673 | 3_4:-45976694 | None:intergenic |
| TAGGTTGGTTGAGGTGCTGA+AGG | 0.511480 | 3_4:+45976721 | Msa0503070:CDS |
| TGCACACCTTAGGTTGGTTG+AGG | 0.530851 | 3_4:+45976712 | Msa0503070:CDS |
| TTGGAGTTTATAGACATGAC+TGG | 0.548171 | 3_4:+45976671 | Msa0503070:CDS |
| GAAAGCTGGGTTTCAGCATA+CGG | 0.556562 | 3_4:+45976413 | Msa0503070:CDS |
| GTGGCAGTTCCAATAAGCAT+AGG | 0.560917 | 3_4:+45976611 | Msa0503070:CDS |
| ACTTGACTGAATGATTGTGC+AGG | 0.563263 | 3_4:-45976582 | None:intergenic |
| AGCATACGGTCCTATTGCAG+TGG | 0.564652 | 3_4:+45976427 | Msa0503070:CDS |
| TCTTTAAATGCAAGAACCAT+AGG | 0.567918 | 3_4:+45975275 | Msa0503070:CDS |
| TTGCATTTAAAGATGTTGAG+AGG | 0.576785 | 3_4:-45975265 | None:intergenic |
| AGAGTCTCAATACGAAAGCT+GGG | 0.578249 | 3_4:+45976400 | Msa0503070:CDS |
| GTTAACTGCACACCTTAGGT+TGG | 0.578700 | 3_4:+45976706 | Msa0503070:CDS |
| AGGTTGGTTGAGGTGCTGAA+GGG | 0.578957 | 3_4:+45976722 | Msa0503070:CDS |
| TGGCAGTTCCAATAAGCATA+GGG | 0.586920 | 3_4:+45976612 | Msa0503070:CDS |
| TCAGCACCTCAACCAACCTA+AGG | 0.594081 | 3_4:-45976718 | None:intergenic |
| TTTGGATGAGAACATTAAAG+GGG | 0.595928 | 3_4:+45976640 | Msa0503070:CDS |
| CTTGACTGAATGATTGTGCA+GGG | 0.604202 | 3_4:-45976581 | None:intergenic |
| AATGCAAGAACCATAGGCAC+AGG | 0.616293 | 3_4:+45975281 | Msa0503070:CDS |
| AATACAGATGACTATAAAGG+AGG | 0.635005 | 3_4:+45976338 | Msa0503070:CDS |
| CATTCAGTCAAGTAATGATG+TGG | 0.635222 | 3_4:+45976592 | Msa0503070:CDS |
| CTAAGGTGTGCAGTTAACTG+AGG | 0.643140 | 3_4:-45976701 | None:intergenic |
| TAAGGTGTGCAGTTAACTGA+GGG | 0.643687 | 3_4:-45976700 | None:intergenic |
| TGGTGAAGTTGCAATTACCT+TGG | 0.664064 | 3_4:+45976505 | Msa0503070:CDS |
| AAATGCTTGAAAAGAATGAG+TGG | 0.685359 | 3_4:+45976485 | Msa0503070:CDS |
| TTGACTGAATGATTGTGCAG+GGG | 0.705699 | 3_4:-45976580 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTATAAATGTTAAAAA+GGG | + | chr3_4:45976134-45976153 | Msa0503070:intron | 10.0% |
| !! | AAAACTATAAATGTTAAAAA+GGG | + | chr3_4:45976134-45976153 | Msa0503070:intron | 10.0% |
| !!! | TATATTTTGCATGATTATAA+AGG | - | chr3_4:45975442-45975461 | None:intergenic | 15.0% |
| !! | CATTCTATTGTTAAATTATT+TGG | + | chr3_4:45975721-45975740 | Msa0503070:intron | 15.0% |
| !!! | TTCATTTTTCAAATTTTTAC+CGG | - | chr3_4:45975825-45975844 | None:intergenic | 15.0% |
| !!! | AAGTAATTTTTTAAGAGTTA+TGG | + | chr3_4:45975955-45975974 | Msa0503070:intron | 15.0% |
| !!! | TTTTAACATTTATAGTTTTG+TGG | - | chr3_4:45976133-45976152 | None:intergenic | 15.0% |
| !! | CAAAACTATAAATGTTAAAA+AGG | + | chr3_4:45976133-45976152 | Msa0503070:intron | 15.0% |
| !!! | TCAATATCAAATGTTTTAAT+TGG | - | chr3_4:45976257-45976276 | None:intergenic | 15.0% |
| !!! | TATATTTTGCATGATTATAA+AGG | - | chr3_4:45975442-45975461 | None:intergenic | 15.0% |
| !! | CATTCTATTGTTAAATTATT+TGG | + | chr3_4:45975721-45975740 | Msa0503070:intron | 15.0% |
| !!! | TTCATTTTTCAAATTTTTAC+CGG | - | chr3_4:45975825-45975844 | None:intergenic | 15.0% |
| !!! | AAGTAATTTTTTAAGAGTTA+TGG | + | chr3_4:45975955-45975974 | Msa0503070:intron | 15.0% |
| !!! | TTTTAACATTTATAGTTTTG+TGG | - | chr3_4:45976133-45976152 | None:intergenic | 15.0% |
| !! | CAAAACTATAAATGTTAAAA+AGG | + | chr3_4:45976133-45976152 | Msa0503070:intron | 15.0% |
| !!! | TCAATATCAAATGTTTTAAT+TGG | - | chr3_4:45976257-45976276 | None:intergenic | 15.0% |
| !! | ATGACATAAAACTATTGTTT+CGG | - | chr3_4:45975309-45975328 | None:intergenic | 20.0% |
| !!! | AAACAATAGTTTTATGTCAT+GGG | + | chr3_4:45975309-45975328 | Msa0503070:CDS | 20.0% |
| !!! | AAATTTTACATCACACTATT+TGG | - | chr3_4:45976180-45976199 | None:intergenic | 20.0% |
| !! | AAATAGTGTGATGTAAAATT+TGG | + | chr3_4:45976179-45976198 | Msa0503070:intron | 20.0% |
| !! | TAAAACATTTGATATTGAGT+TGG | + | chr3_4:45976259-45976278 | Msa0503070:intron | 20.0% |
| !! | AAAACATTTGATATTGAGTT+GGG | + | chr3_4:45976260-45976279 | Msa0503070:intron | 20.0% |
| !! | TCCTATAATTATTCATTCAT+AGG | + | chr3_4:45976309-45976328 | Msa0503070:intron | 20.0% |
| !! | ACCTATGAATGAATAATTAT+AGG | - | chr3_4:45976313-45976332 | None:intergenic | 20.0% |
| !! | ATAAATACAGATGACTATAA+AGG | + | chr3_4:45976335-45976354 | Msa0503070:CDS | 20.0% |
| !! | ATGACATAAAACTATTGTTT+CGG | - | chr3_4:45975309-45975328 | None:intergenic | 20.0% |
| !!! | AAACAATAGTTTTATGTCAT+GGG | + | chr3_4:45975309-45975328 | Msa0503070:CDS | 20.0% |
| !!! | AAATTTTACATCACACTATT+TGG | - | chr3_4:45976180-45976199 | None:intergenic | 20.0% |
| !! | AAATAGTGTGATGTAAAATT+TGG | + | chr3_4:45976179-45976198 | Msa0503070:intron | 20.0% |
| !! | TAAAACATTTGATATTGAGT+TGG | + | chr3_4:45976259-45976278 | Msa0503070:intron | 20.0% |
| !! | AAAACATTTGATATTGAGTT+GGG | + | chr3_4:45976260-45976279 | Msa0503070:intron | 20.0% |
| !! | TCCTATAATTATTCATTCAT+AGG | + | chr3_4:45976309-45976328 | Msa0503070:intron | 20.0% |
| !! | ACCTATGAATGAATAATTAT+AGG | - | chr3_4:45976313-45976332 | None:intergenic | 20.0% |
| !! | ATAAATACAGATGACTATAA+AGG | + | chr3_4:45976335-45976354 | Msa0503070:CDS | 20.0% |
| ! | TGACATAAAACTATTGTTTC+GGG | - | chr3_4:45975308-45975327 | None:intergenic | 25.0% |
| !!! | GAAACAATAGTTTTATGTCA+TGG | + | chr3_4:45975308-45975327 | Msa0503070:CDS | 25.0% |
| !! | CAATTTTATTCCATATAGAC+TGG | - | chr3_4:45975346-45975365 | None:intergenic | 25.0% |
| !! | CTGTAATTTTCAGTTAAAAG+AGG | - | chr3_4:45975371-45975390 | None:intergenic | 25.0% |
| ! | GAAATCTCATATTGTGTATT+TGG | + | chr3_4:45975745-45975764 | Msa0503070:intron | 25.0% |
| !!! | AACATTTATAGTTTTGTGGA+AGG | - | chr3_4:45976129-45976148 | None:intergenic | 25.0% |
| ! | TATTTGGATGAGAACATTAA+AGG | + | chr3_4:45976638-45976657 | Msa0503070:CDS | 25.0% |
| ! | ATTTGGATGAGAACATTAAA+GGG | + | chr3_4:45976639-45976658 | Msa0503070:CDS | 25.0% |
| ! | TGACATAAAACTATTGTTTC+GGG | - | chr3_4:45975308-45975327 | None:intergenic | 25.0% |
| !!! | GAAACAATAGTTTTATGTCA+TGG | + | chr3_4:45975308-45975327 | Msa0503070:CDS | 25.0% |
| !! | CAATTTTATTCCATATAGAC+TGG | - | chr3_4:45975346-45975365 | None:intergenic | 25.0% |
| !! | CTGTAATTTTCAGTTAAAAG+AGG | - | chr3_4:45975371-45975390 | None:intergenic | 25.0% |
| ! | GAAATCTCATATTGTGTATT+TGG | + | chr3_4:45975745-45975764 | Msa0503070:intron | 25.0% |
| !!! | AACATTTATAGTTTTGTGGA+AGG | - | chr3_4:45976129-45976148 | None:intergenic | 25.0% |
| ! | TATTTGGATGAGAACATTAA+AGG | + | chr3_4:45976638-45976657 | Msa0503070:CDS | 25.0% |
| ! | ATTTGGATGAGAACATTAAA+GGG | + | chr3_4:45976639-45976658 | Msa0503070:CDS | 25.0% |
| TTGCATTTAAAGATGTTGAG+AGG | - | chr3_4:45975268-45975287 | None:intergenic | 30.0% | |
| TCTTTAAATGCAAGAACCAT+AGG | + | chr3_4:45975275-45975294 | Msa0503070:CDS | 30.0% | |
| !!! | ATAGTTTTATGTCATGGGTT+TGG | + | chr3_4:45975314-45975333 | Msa0503070:CDS | 30.0% |
| AATCACTCTTATAGATGAGT+TGG | + | chr3_4:45975490-45975509 | Msa0503070:CDS | 30.0% | |
| CAACAAAAGTGATACATTTG+AGG | - | chr3_4:45975517-45975536 | None:intergenic | 30.0% | |
| !! | CTCAAATGTATCACTTTTGT+TGG | + | chr3_4:45975515-45975534 | Msa0503070:CDS | 30.0% |
| ! | ACATCAGAGAGAGTATATAT+AGG | - | chr3_4:45975646-45975665 | None:intergenic | 30.0% |
| ! | AAAACTCACCATCTTTAAAG+TGG | + | chr3_4:45976046-45976065 | Msa0503070:intron | 30.0% |
| ! | TTTTGTGGAAGGACAAAAAT+AGG | - | chr3_4:45976118-45976137 | None:intergenic | 30.0% |
| !!! | TCAAATGTTTTAATTGGCCT+AGG | - | chr3_4:45976251-45976270 | None:intergenic | 30.0% |
| AATACAGATGACTATAAAGG+AGG | + | chr3_4:45976338-45976357 | Msa0503070:CDS | 30.0% | |
| AAATGCTTGAAAAGAATGAG+TGG | + | chr3_4:45976485-45976504 | Msa0503070:CDS | 30.0% | |
| TTTCAGTGACTATAGAGATA+TGG | + | chr3_4:45976541-45976560 | Msa0503070:CDS | 30.0% | |
| CTATAGAGATATGGTTGAAA+AGG | + | chr3_4:45976550-45976569 | Msa0503070:CDS | 30.0% | |
| AAATAATGCCCTATGCTTAT+TGG | - | chr3_4:45976623-45976642 | None:intergenic | 30.0% | |
| ! | AATAAGCATAGGGCATTATT+TGG | + | chr3_4:45976622-45976641 | Msa0503070:CDS | 30.0% |
| TTTGGATGAGAACATTAAAG+GGG | + | chr3_4:45976640-45976659 | Msa0503070:CDS | 30.0% | |
| TTGCATTTAAAGATGTTGAG+AGG | - | chr3_4:45975268-45975287 | None:intergenic | 30.0% | |
| TCTTTAAATGCAAGAACCAT+AGG | + | chr3_4:45975275-45975294 | Msa0503070:CDS | 30.0% | |
| !!! | ATAGTTTTATGTCATGGGTT+TGG | + | chr3_4:45975314-45975333 | Msa0503070:CDS | 30.0% |
| AATCACTCTTATAGATGAGT+TGG | + | chr3_4:45975490-45975509 | Msa0503070:CDS | 30.0% | |
| CAACAAAAGTGATACATTTG+AGG | - | chr3_4:45975517-45975536 | None:intergenic | 30.0% | |
| !! | CTCAAATGTATCACTTTTGT+TGG | + | chr3_4:45975515-45975534 | Msa0503070:CDS | 30.0% |
| ! | ACATCAGAGAGAGTATATAT+AGG | - | chr3_4:45975646-45975665 | None:intergenic | 30.0% |
| ! | AAAACTCACCATCTTTAAAG+TGG | + | chr3_4:45976046-45976065 | Msa0503070:intron | 30.0% |
| ! | TTTTGTGGAAGGACAAAAAT+AGG | - | chr3_4:45976118-45976137 | None:intergenic | 30.0% |
| !!! | TCAAATGTTTTAATTGGCCT+AGG | - | chr3_4:45976251-45976270 | None:intergenic | 30.0% |
| AATACAGATGACTATAAAGG+AGG | + | chr3_4:45976338-45976357 | Msa0503070:CDS | 30.0% | |
| AAATGCTTGAAAAGAATGAG+TGG | + | chr3_4:45976485-45976504 | Msa0503070:CDS | 30.0% | |
| TTTCAGTGACTATAGAGATA+TGG | + | chr3_4:45976541-45976560 | Msa0503070:CDS | 30.0% | |
| CTATAGAGATATGGTTGAAA+AGG | + | chr3_4:45976550-45976569 | Msa0503070:CDS | 30.0% | |
| AAATAATGCCCTATGCTTAT+TGG | - | chr3_4:45976623-45976642 | None:intergenic | 30.0% | |
| ! | AATAAGCATAGGGCATTATT+TGG | + | chr3_4:45976622-45976641 | Msa0503070:CDS | 30.0% |
| TTTGGATGAGAACATTAAAG+GGG | + | chr3_4:45976640-45976659 | Msa0503070:CDS | 30.0% | |
| !! | ACAGTCTAGTTCTGTTTGAT+TGG | + | chr3_4:45975387-45975406 | Msa0503070:CDS | 35.0% |
| TCTGTAATAGCTCCAGAAAA+TGG | - | chr3_4:45975413-45975432 | None:intergenic | 35.0% | |
| GTGATTAACTCATCAGCATA+AGG | - | chr3_4:45975476-45975495 | None:intergenic | 35.0% | |
| ! | AAAGAGCTCAGGCTTTTTAA+TGG | - | chr3_4:45975576-45975595 | None:intergenic | 35.0% |
| ! | GTGCATTTCTTTTGATGTTG+TGG | - | chr3_4:45976096-45976115 | None:intergenic | 35.0% |
| TTGGAAGTGATTTATCGAGT+TGG | - | chr3_4:45976161-45976180 | None:intergenic | 35.0% | |
| ACTAACCAAATTTGAGCTCT+TGG | + | chr3_4:45976207-45976226 | Msa0503070:intron | 35.0% | |
| TTCTTCCAAGAGCTCAAATT+TGG | - | chr3_4:45976215-45976234 | None:intergenic | 35.0% | |
| AGAAAAAAAAACCCTAGCCT+AGG | + | chr3_4:45976231-45976250 | Msa0503070:intron | 35.0% | |
| ! | GTCACTGAAAAACACAGTTT+TGG | - | chr3_4:45976531-45976550 | None:intergenic | 35.0% |
| CATTCAGTCAAGTAATGATG+TGG | + | chr3_4:45976592-45976611 | Msa0503070:CDS | 35.0% | |
| TTGGAGTTTATAGACATGAC+TGG | + | chr3_4:45976671-45976690 | Msa0503070:CDS | 35.0% | |
| !! | ACAGTCTAGTTCTGTTTGAT+TGG | + | chr3_4:45975387-45975406 | Msa0503070:CDS | 35.0% |
| TCTGTAATAGCTCCAGAAAA+TGG | - | chr3_4:45975413-45975432 | None:intergenic | 35.0% | |
| GTGATTAACTCATCAGCATA+AGG | - | chr3_4:45975476-45975495 | None:intergenic | 35.0% | |
| ! | AAAGAGCTCAGGCTTTTTAA+TGG | - | chr3_4:45975576-45975595 | None:intergenic | 35.0% |
| ! | GTGCATTTCTTTTGATGTTG+TGG | - | chr3_4:45976096-45976115 | None:intergenic | 35.0% |
| TTGGAAGTGATTTATCGAGT+TGG | - | chr3_4:45976161-45976180 | None:intergenic | 35.0% | |
| ACTAACCAAATTTGAGCTCT+TGG | + | chr3_4:45976207-45976226 | Msa0503070:intron | 35.0% | |
| TTCTTCCAAGAGCTCAAATT+TGG | - | chr3_4:45976215-45976234 | None:intergenic | 35.0% | |
| AGAAAAAAAAACCCTAGCCT+AGG | + | chr3_4:45976231-45976250 | Msa0503070:intron | 35.0% | |
| ! | GTCACTGAAAAACACAGTTT+TGG | - | chr3_4:45976531-45976550 | None:intergenic | 35.0% |
| CATTCAGTCAAGTAATGATG+TGG | + | chr3_4:45976592-45976611 | Msa0503070:CDS | 35.0% | |
| TTGGAGTTTATAGACATGAC+TGG | + | chr3_4:45976671-45976690 | Msa0503070:CDS | 35.0% | |
| !!! | GATGTTGAGAGGCTCTTTTT+TGG | - | chr3_4:45975257-45975276 | None:intergenic | 40.0% |
| TTGGAACAGACCAGTCTATA+TGG | + | chr3_4:45975333-45975352 | Msa0503070:CDS | 40.0% | |
| !! | CTGTTTGATTGGCCATTTTC+TGG | + | chr3_4:45975398-45975417 | Msa0503070:CDS | 40.0% |
| CTCATCAGCATAAGGTTCAT+AGG | - | chr3_4:45975468-45975487 | None:intergenic | 40.0% | |
| ! | CACTTTTGTTGGACACTCTA+TGG | + | chr3_4:45975526-45975545 | Msa0503070:CDS | 40.0% |
| AAAAGCCTGAGCTCTTTAAG+AGG | + | chr3_4:45975579-45975598 | Msa0503070:CDS | 40.0% | |
| ACAATCCTCTTAAAGAGCTC+AGG | - | chr3_4:45975587-45975606 | None:intergenic | 40.0% | |
| !! | GTAAAGATGAGAGTACCTTG+GGG | - | chr3_4:45975624-45975643 | None:intergenic | 40.0% |
| !! | GGTAAAGATGAGAGTACCTT+GGG | - | chr3_4:45975625-45975644 | None:intergenic | 40.0% |
| !! | AGGTAAAGATGAGAGTACCT+TGG | - | chr3_4:45975626-45975645 | None:intergenic | 40.0% |
| !! | ACGTTTTCCATCAGAAGTGT+CGG | + | chr3_4:45975894-45975913 | Msa0503070:intron | 40.0% |
| !!! | GTTTTAATTGGCCTAGGCTA+GGG | - | chr3_4:45976245-45976264 | None:intergenic | 40.0% |
| !!! | TGTTTTAATTGGCCTAGGCT+AGG | - | chr3_4:45976246-45976265 | None:intergenic | 40.0% |
| GCTTTCGTATTGAGACTCTA+TGG | - | chr3_4:45976399-45976418 | None:intergenic | 40.0% | |
| TAGAGTCTCAATACGAAAGC+TGG | + | chr3_4:45976399-45976418 | Msa0503070:CDS | 40.0% | |
| AGAGTCTCAATACGAAAGCT+GGG | + | chr3_4:45976400-45976419 | Msa0503070:CDS | 40.0% | |
| TCATTTGGATCCACTGCAAT+AGG | - | chr3_4:45976440-45976459 | None:intergenic | 40.0% | |
| TCAACAGAGTCAGCATCATT+TGG | - | chr3_4:45976455-45976474 | None:intergenic | 40.0% | |
| TGGTGAAGTTGCAATTACCT+TGG | + | chr3_4:45976505-45976524 | Msa0503070:CDS | 40.0% | |
| !! | GAAAAACACAGTTTTGGCCA+AGG | - | chr3_4:45976525-45976544 | None:intergenic | 40.0% |
| TTGACTGAATGATTGTGCAG+GGG | - | chr3_4:45976583-45976602 | None:intergenic | 40.0% | |
| CTTGACTGAATGATTGTGCA+GGG | - | chr3_4:45976584-45976603 | None:intergenic | 40.0% | |
| ACTTGACTGAATGATTGTGC+AGG | - | chr3_4:45976585-45976604 | None:intergenic | 40.0% | |
| TGGCAGTTCCAATAAGCATA+GGG | + | chr3_4:45976612-45976631 | Msa0503070:CDS | 40.0% | |
| !! | CATTAAAGGGGTGTCTACTT+TGG | + | chr3_4:45976652-45976671 | Msa0503070:CDS | 40.0% |
| TAAGGTGTGCAGTTAACTGA+GGG | - | chr3_4:45976703-45976722 | None:intergenic | 40.0% | |
| !!! | GATGTTGAGAGGCTCTTTTT+TGG | - | chr3_4:45975257-45975276 | None:intergenic | 40.0% |
| TTGGAACAGACCAGTCTATA+TGG | + | chr3_4:45975333-45975352 | Msa0503070:CDS | 40.0% | |
| !! | CTGTTTGATTGGCCATTTTC+TGG | + | chr3_4:45975398-45975417 | Msa0503070:CDS | 40.0% |
| CTCATCAGCATAAGGTTCAT+AGG | - | chr3_4:45975468-45975487 | None:intergenic | 40.0% | |
| ! | CACTTTTGTTGGACACTCTA+TGG | + | chr3_4:45975526-45975545 | Msa0503070:CDS | 40.0% |
| AAAAGCCTGAGCTCTTTAAG+AGG | + | chr3_4:45975579-45975598 | Msa0503070:CDS | 40.0% | |
| ACAATCCTCTTAAAGAGCTC+AGG | - | chr3_4:45975587-45975606 | None:intergenic | 40.0% | |
| !! | GTAAAGATGAGAGTACCTTG+GGG | - | chr3_4:45975624-45975643 | None:intergenic | 40.0% |
| !! | GGTAAAGATGAGAGTACCTT+GGG | - | chr3_4:45975625-45975644 | None:intergenic | 40.0% |
| !! | AGGTAAAGATGAGAGTACCT+TGG | - | chr3_4:45975626-45975645 | None:intergenic | 40.0% |
| !! | ACGTTTTCCATCAGAAGTGT+CGG | + | chr3_4:45975894-45975913 | Msa0503070:intron | 40.0% |
| !!! | GTTTTAATTGGCCTAGGCTA+GGG | - | chr3_4:45976245-45976264 | None:intergenic | 40.0% |
| !!! | TGTTTTAATTGGCCTAGGCT+AGG | - | chr3_4:45976246-45976265 | None:intergenic | 40.0% |
| GCTTTCGTATTGAGACTCTA+TGG | - | chr3_4:45976399-45976418 | None:intergenic | 40.0% | |
| TAGAGTCTCAATACGAAAGC+TGG | + | chr3_4:45976399-45976418 | Msa0503070:CDS | 40.0% | |
| AGAGTCTCAATACGAAAGCT+GGG | + | chr3_4:45976400-45976419 | Msa0503070:CDS | 40.0% | |
| TCATTTGGATCCACTGCAAT+AGG | - | chr3_4:45976440-45976459 | None:intergenic | 40.0% | |
| TCAACAGAGTCAGCATCATT+TGG | - | chr3_4:45976455-45976474 | None:intergenic | 40.0% | |
| TGGTGAAGTTGCAATTACCT+TGG | + | chr3_4:45976505-45976524 | Msa0503070:CDS | 40.0% | |
| !! | GAAAAACACAGTTTTGGCCA+AGG | - | chr3_4:45976525-45976544 | None:intergenic | 40.0% |
| TTGACTGAATGATTGTGCAG+GGG | - | chr3_4:45976583-45976602 | None:intergenic | 40.0% | |
| CTTGACTGAATGATTGTGCA+GGG | - | chr3_4:45976584-45976603 | None:intergenic | 40.0% | |
| ACTTGACTGAATGATTGTGC+AGG | - | chr3_4:45976585-45976604 | None:intergenic | 40.0% | |
| TGGCAGTTCCAATAAGCATA+GGG | + | chr3_4:45976612-45976631 | Msa0503070:CDS | 40.0% | |
| !! | CATTAAAGGGGTGTCTACTT+TGG | + | chr3_4:45976652-45976671 | Msa0503070:CDS | 40.0% |
| TAAGGTGTGCAGTTAACTGA+GGG | - | chr3_4:45976703-45976722 | None:intergenic | 40.0% | |
| AATGCAAGAACCATAGGCAC+AGG | + | chr3_4:45975281-45975300 | Msa0503070:CDS | 45.0% | |
| CACTCTATGGCTGCTATGAT+AGG | + | chr3_4:45975539-45975558 | Msa0503070:CDS | 45.0% | |
| ! | GAGCTCAGGCTTTTTAATGG+AGG | - | chr3_4:45975573-45975592 | None:intergenic | 45.0% |
| TTCTTCTTTGTGCTTCCCCA+AGG | + | chr3_4:45975606-45975625 | Msa0503070:CDS | 45.0% | |
| TCTGACTTTCGTGTTTGCGT+CGG | - | chr3_4:45975783-45975802 | None:intergenic | 45.0% | |
| TATGACACTGACGTTGACAC+CGG | + | chr3_4:45975803-45975822 | Msa0503070:intron | 45.0% | |
| CTTCTGATGGAAAACGTGTC+TGG | - | chr3_4:45975891-45975910 | None:intergenic | 45.0% | |
| ! | GAGCGAGACCACTTTAAAGA+TGG | - | chr3_4:45976057-45976076 | None:intergenic | 45.0% |
| GAAAGCTGGGTTTCAGCATA+CGG | + | chr3_4:45976413-45976432 | Msa0503070:CDS | 45.0% | |
| GTGGCAGTTCCAATAAGCAT+AGG | + | chr3_4:45976611-45976630 | Msa0503070:CDS | 45.0% | |
| GTGCAGTTAACTGAGGGAAA+TGG | - | chr3_4:45976697-45976716 | None:intergenic | 45.0% | |
| CTAAGGTGTGCAGTTAACTG+AGG | - | chr3_4:45976704-45976723 | None:intergenic | 45.0% | |
| CTCAGTTAACTGCACACCTT+AGG | + | chr3_4:45976702-45976721 | Msa0503070:CDS | 45.0% | |
| GTTAACTGCACACCTTAGGT+TGG | + | chr3_4:45976706-45976725 | Msa0503070:CDS | 45.0% | |
| AATGCAAGAACCATAGGCAC+AGG | + | chr3_4:45975281-45975300 | Msa0503070:CDS | 45.0% | |
| CACTCTATGGCTGCTATGAT+AGG | + | chr3_4:45975539-45975558 | Msa0503070:CDS | 45.0% | |
| ! | GAGCTCAGGCTTTTTAATGG+AGG | - | chr3_4:45975573-45975592 | None:intergenic | 45.0% |
| TTCTTCTTTGTGCTTCCCCA+AGG | + | chr3_4:45975606-45975625 | Msa0503070:CDS | 45.0% | |
| TCTGACTTTCGTGTTTGCGT+CGG | - | chr3_4:45975783-45975802 | None:intergenic | 45.0% | |
| TATGACACTGACGTTGACAC+CGG | + | chr3_4:45975803-45975822 | Msa0503070:intron | 45.0% | |
| CTTCTGATGGAAAACGTGTC+TGG | - | chr3_4:45975891-45975910 | None:intergenic | 45.0% | |
| ! | GAGCGAGACCACTTTAAAGA+TGG | - | chr3_4:45976057-45976076 | None:intergenic | 45.0% |
| GAAAGCTGGGTTTCAGCATA+CGG | + | chr3_4:45976413-45976432 | Msa0503070:CDS | 45.0% | |
| GTGGCAGTTCCAATAAGCAT+AGG | + | chr3_4:45976611-45976630 | Msa0503070:CDS | 45.0% | |
| GTGCAGTTAACTGAGGGAAA+TGG | - | chr3_4:45976697-45976716 | None:intergenic | 45.0% | |
| CTAAGGTGTGCAGTTAACTG+AGG | - | chr3_4:45976704-45976723 | None:intergenic | 45.0% | |
| CTCAGTTAACTGCACACCTT+AGG | + | chr3_4:45976702-45976721 | Msa0503070:CDS | 45.0% | |
| GTTAACTGCACACCTTAGGT+TGG | + | chr3_4:45976706-45976725 | Msa0503070:CDS | 45.0% | |
| GTCTGGTGTTCGACATGTGT+CGG | - | chr3_4:45975874-45975893 | None:intergenic | 50.0% | |
| !! | TGTAGCACCGACACTTCTGA+TGG | - | chr3_4:45975904-45975923 | None:intergenic | 50.0% |
| !! | GTGTCGGTGCTACAGAGATT+TGG | + | chr3_4:45975910-45975929 | Msa0503070:intron | 50.0% |
| AGCATACGGTCCTATTGCAG+TGG | + | chr3_4:45976427-45976446 | Msa0503070:CDS | 50.0% | |
| !! | TGCACACCTTAGGTTGGTTG+AGG | + | chr3_4:45976712-45976731 | Msa0503070:CDS | 50.0% |
| TCAGCACCTCAACCAACCTA+AGG | - | chr3_4:45976721-45976740 | None:intergenic | 50.0% | |
| !! | TAGGTTGGTTGAGGTGCTGA+AGG | + | chr3_4:45976721-45976740 | Msa0503070:CDS | 50.0% |
| !! | AGGTTGGTTGAGGTGCTGAA+GGG | + | chr3_4:45976722-45976741 | Msa0503070:CDS | 50.0% |
| !! | TGAGGTGCTGAAGGGTATTG+TGG | + | chr3_4:45976730-45976749 | Msa0503070:CDS | 50.0% |
| !! | GAGGTGCTGAAGGGTATTGT+GGG | + | chr3_4:45976731-45976750 | Msa0503070:CDS | 50.0% |
| GTCTGGTGTTCGACATGTGT+CGG | - | chr3_4:45975874-45975893 | None:intergenic | 50.0% | |
| !! | TGTAGCACCGACACTTCTGA+TGG | - | chr3_4:45975904-45975923 | None:intergenic | 50.0% |
| !! | GTGTCGGTGCTACAGAGATT+TGG | + | chr3_4:45975910-45975929 | Msa0503070:intron | 50.0% |
| AGCATACGGTCCTATTGCAG+TGG | + | chr3_4:45976427-45976446 | Msa0503070:CDS | 50.0% | |
| !! | TGCACACCTTAGGTTGGTTG+AGG | + | chr3_4:45976712-45976731 | Msa0503070:CDS | 50.0% |
| TCAGCACCTCAACCAACCTA+AGG | - | chr3_4:45976721-45976740 | None:intergenic | 50.0% | |
| !! | TAGGTTGGTTGAGGTGCTGA+AGG | + | chr3_4:45976721-45976740 | Msa0503070:CDS | 50.0% |
| !! | AGGTTGGTTGAGGTGCTGAA+GGG | + | chr3_4:45976722-45976741 | Msa0503070:CDS | 50.0% |
| !! | TGAGGTGCTGAAGGGTATTG+TGG | + | chr3_4:45976730-45976749 | Msa0503070:CDS | 50.0% |
| !! | GAGGTGCTGAAGGGTATTGT+GGG | + | chr3_4:45976731-45976750 | Msa0503070:CDS | 50.0% |
| ! | TGTTTCGGGTCCTGTGCCTA+TGG | - | chr3_4:45975294-45975313 | None:intergenic | 55.0% |
| ! | TGTTTCGGGTCCTGTGCCTA+TGG | - | chr3_4:45975294-45975313 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 45975245 | 45976757 | 45975245 | ID=Msa0503070;Name=Msa0503070 |
| chr3_4 | mRNA | 45975245 | 45976757 | 45975245 | ID=Msa0503070-mRNA-1;Parent=Msa0503070;Name=Msa0503070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|269 |
| chr3_4 | exon | 45975245 | 45975627 | 45975245 | ID=Msa0503070-mRNA-1:exon:9794;Parent=Msa0503070-mRNA-1 |
| chr3_4 | exon | 45976331 | 45976757 | 45976331 | ID=Msa0503070-mRNA-1:exon:9795;Parent=Msa0503070-mRNA-1 |
| chr3_4 | CDS | 45975245 | 45975627 | 45975245 | ID=Msa0503070-mRNA-1:cds;Parent=Msa0503070-mRNA-1 |
| chr3_4 | CDS | 45976331 | 45976757 | 45976331 | ID=Msa0503070-mRNA-1:cds;Parent=Msa0503070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
