Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403830 | RHN43201.1 | 88.136 | 59 | 6 | 1 | 2 | 60 | 3 | 60 | 5.45e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403830 | A0A396GSR0 | 88.136 | 59 | 6 | 1 | 2 | 60 | 3 | 60 | 2.60e-23 | 100 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0403830 | Msa0485680 | 0.816860 | 4.448106e-52 | -8.615850e-47 |
| Msa0403830 | Msa0869010 | 0.805644 | 1.208647e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403830 | MtrunA17_Chr8g0385241 | 88.136 | 59 | 6 | 1 | 2 | 60 | 3 | 60 | 5.01e-27 | 100 |
| Msa0403830 | MtrunA17_Chr8g0382971 | 65.517 | 58 | 19 | 1 | 3 | 60 | 19 | 75 | 7.92e-18 | 75.1 |
| Msa0403830 | MtrunA17_Chr2g0316631 | 66.000 | 50 | 16 | 1 | 9 | 58 | 105 | 153 | 4.01e-15 | 67.4 |
| Msa0403830 | MtrunA17_Chr2g0316631 | 60.714 | 56 | 21 | 1 | 3 | 58 | 30 | 84 | 1.70e-14 | 65.5 |
| Msa0403830 | MtrunA17_Chr2g0316631 | 62.963 | 54 | 19 | 1 | 6 | 59 | 240 | 292 | 3.53e-13 | 62.0 |
| Msa0403830 | MtrunA17_Chr2g0316631 | 62.000 | 50 | 18 | 1 | 9 | 58 | 174 | 222 | 1.25e-12 | 60.5 |
| Msa0403830 | MtrunA17_Chr6g0467061 | 64.815 | 54 | 18 | 1 | 6 | 59 | 223 | 275 | 9.10e-15 | 66.2 |
| Msa0403830 | MtrunA17_Chr6g0467061 | 64.151 | 53 | 18 | 1 | 6 | 58 | 85 | 136 | 3.61e-14 | 64.7 |
| Msa0403830 | MtrunA17_Chr6g0467061 | 57.143 | 56 | 23 | 1 | 3 | 58 | 13 | 67 | 2.04e-12 | 59.7 |
| Msa0403830 | MtrunA17_Chr6g0467061 | 57.692 | 52 | 21 | 1 | 6 | 57 | 154 | 204 | 1.03e-11 | 57.8 |
| Msa0403830 | MtrunA17_Chr6g0467061 | 66.667 | 45 | 14 | 1 | 6 | 50 | 292 | 335 | 1.28e-11 | 57.8 |
| Msa0403830 | MtrunA17_Chr8g0380791 | 56.897 | 58 | 24 | 1 | 3 | 60 | 7 | 63 | 1.91e-14 | 65.9 |
| Msa0403830 | MtrunA17_Chr2g0316611 | 60.714 | 56 | 21 | 1 | 3 | 58 | 30 | 84 | 2.04e-14 | 65.5 |
| Msa0403830 | MtrunA17_Chr2g0316611 | 62.963 | 54 | 19 | 1 | 6 | 59 | 171 | 223 | 2.28e-14 | 65.5 |
| Msa0403830 | MtrunA17_Chr2g0316611 | 64.706 | 51 | 17 | 1 | 9 | 59 | 312 | 361 | 4.54e-14 | 64.7 |
| Msa0403830 | MtrunA17_Chr2g0316611 | 65.217 | 46 | 15 | 1 | 13 | 58 | 247 | 291 | 6.36e-13 | 61.2 |
| Msa0403830 | MtrunA17_Chr2g0316611 | 62.000 | 50 | 18 | 1 | 9 | 58 | 105 | 153 | 1.72e-12 | 60.1 |
| Msa0403830 | MtrunA17_Chr5g0398011 | 64.583 | 48 | 16 | 1 | 9 | 56 | 104 | 150 | 1.10e-13 | 61.2 |
| Msa0403830 | MtrunA17_Chr5g0398011 | 61.538 | 52 | 18 | 2 | 7 | 57 | 32 | 82 | 1.43e-12 | 58.5 |
| Msa0403830 | MtrunA17_Chr8g0377211 | 54.386 | 57 | 24 | 2 | 3 | 59 | 14 | 68 | 1.09e-11 | 56.6 |
| Msa0403830 | MtrunA17_Chr8g0377221 | 50.943 | 53 | 25 | 1 | 6 | 58 | 2 | 53 | 2.36e-11 | 56.6 |
| Msa0403830 | MtrunA17_Chr8g0377201 | 54.000 | 50 | 21 | 2 | 8 | 57 | 26 | 73 | 2.67e-11 | 53.5 |
| Msa0403830 | MtrunA17_Chr8g0377191 | 62.500 | 48 | 17 | 1 | 3 | 50 | 6 | 52 | 3.28e-11 | 55.8 |
| Msa0403830 | MtrunA17_Chr4g0059911 | 52.308 | 65 | 29 | 2 | 1 | 64 | 1 | 64 | 3.94e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAGGGTGATTGGGTTGA+TGG | 0.335707 | 3_2:+34404549 | Msa0403830:CDS |
| GATCAATATATGAGGGTGAT+TGG | 0.359146 | 3_2:+34404541 | Msa0403830:CDS |
| TGGGTTGATGGAGATAAGAC+AGG | 0.450163 | 3_2:+34404561 | Msa0403830:CDS |
| TGATGATGGATCAATATATG+AGG | 0.474674 | 3_2:+34404533 | Msa0403830:CDS |
| TACATTGGTAACATCAAGAA+TGG | 0.480521 | 3_2:+34404477 | Msa0403830:CDS |
| CCCTCATACTTGTCTCCTGA+TGG | 0.482924 | 3_2:-34404603 | None:intergenic |
| ATCAATATATGAGGGTGATT+GGG | 0.524240 | 3_2:+34404542 | Msa0403830:CDS |
| AAGTACACATGGTTTGATGA+TGG | 0.536195 | 3_2:+34404519 | Msa0403830:CDS |
| GAGATCATGACGATGCGAAA+TGG | 0.542474 | 3_2:+34407067 | Msa0403830:intron |
| AATGGACTTGCTCATGGCAA+AGG | 0.546265 | 3_2:+34404495 | Msa0403830:CDS |
| ATCAAGAATGGACTTGCTCA+TGG | 0.558306 | 3_2:+34404489 | Msa0403830:CDS |
| GATGGAGATAAGACAGGGAA+AGG | 0.568932 | 3_2:+34404567 | Msa0403830:CDS |
| GGACTGTTCATAGAGCCATC+AGG | 0.607086 | 3_2:+34404588 | Msa0403830:CDS |
| TCAGACGAGGGTGTCTACAT+TGG | 0.615373 | 3_2:+34404462 | Msa0403830:CDS |
| GGGTTGATGGAGATAAGACA+GGG | 0.616802 | 3_2:+34404562 | Msa0403830:CDS |
| AAAGATGTTGTATTCAGACG+AGG | 0.623934 | 3_2:+34404449 | Msa0403830:CDS |
| AAGATGTTGTATTCAGACGA+GGG | 0.637143 | 3_2:+34404450 | Msa0403830:CDS |
| GATGATGGATCAATATATGA+GGG | 0.656551 | 3_2:+34404534 | Msa0403830:CDS |
| ATGGCAAAGGAAAGTACACA+TGG | 0.689912 | 3_2:+34404508 | Msa0403830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTATAAAAAAA+AGG | - | chr3_2:34406914-34406933 | None:intergenic | 0.0% |
| !!! | AATTGTTTTTAAAAAATGTT+TGG | + | chr3_2:34405909-34405928 | Msa0403830:intron | 10.0% |
| !! | AATATAATTTGGATATAATT+TGG | - | chr3_2:34406741-34406760 | None:intergenic | 10.0% |
| !!! | TAATAGTTTGTAATATAATT+TGG | - | chr3_2:34406752-34406771 | None:intergenic | 10.0% |
| !! | TTTATAATAAAAAAAACTCT+AGG | + | chr3_2:34406918-34406937 | Msa0403830:intron | 10.0% |
| !! | AATTTGGAAAAAAAATGAAA+GGG | + | chr3_2:34404929-34404948 | Msa0403830:intron | 15.0% |
| !!! | GATCTTTAAAAAAAGTATTA+TGG | + | chr3_2:34405758-34405777 | Msa0403830:intron | 15.0% |
| !! | AGAAACATGAATAATTAAAT+AGG | + | chr3_2:34406313-34406332 | Msa0403830:intron | 15.0% |
| !!! | AACATCAAAAAATAATTTTC+TGG | - | chr3_2:34406632-34406651 | None:intergenic | 15.0% |
| !!! | TTTTTTGATGTTAGTTAATT+AGG | + | chr3_2:34406640-34406659 | Msa0403830:intron | 15.0% |
| !! | TAGCAACTTTAGTATTATTA+TGG | + | chr3_2:34404126-34404145 | Msa0403830:intron | 20.0% |
| !! | AGCAACTTTAGTATTATTAT+GGG | + | chr3_2:34404127-34404146 | Msa0403830:intron | 20.0% |
| !! | GTTTGTTTGTAGTAAATAAA+TGG | - | chr3_2:34404304-34404323 | None:intergenic | 20.0% |
| !! | AGTTTATAGATATGCAAATT+GGG | + | chr3_2:34404893-34404912 | Msa0403830:intron | 20.0% |
| !! | GAATTTGGAAAAAAAATGAA+AGG | + | chr3_2:34404928-34404947 | Msa0403830:intron | 20.0% |
| !! | AAATTTGACAAAAGACAAAA+TGG | + | chr3_2:34405208-34405227 | Msa0403830:intron | 20.0% |
| !! | TAATAACAACAACAAAAAAC+AGG | + | chr3_2:34405622-34405641 | Msa0403830:intron | 20.0% |
| !! | AATAACAACAACAAAAAACA+GGG | + | chr3_2:34405623-34405642 | Msa0403830:intron | 20.0% |
| !! | TGGAAAATTTGATATAGTAT+TGG | + | chr3_2:34405778-34405797 | Msa0403830:intron | 20.0% |
| !!! | AAAATTTGATATAGTATTGG+TGG | + | chr3_2:34405781-34405800 | Msa0403830:intron | 20.0% |
| !!! | AACTATTTTATAATCATGCA+TGG | + | chr3_2:34405844-34405863 | Msa0403830:intron | 20.0% |
| !!! | TAGAAAATCATTTGACTTAT+AGG | + | chr3_2:34405874-34405893 | Msa0403830:intron | 20.0% |
| !!! | AGAAAATCATTTGACTTATA+GGG | + | chr3_2:34405875-34405894 | Msa0403830:intron | 20.0% |
| !!! | GTTTTTAAAAAATGTTTGGA+CGG | + | chr3_2:34405913-34405932 | Msa0403830:intron | 20.0% |
| !! | TTCTTATACTAATCTGATTT+GGG | - | chr3_2:34405971-34405990 | None:intergenic | 20.0% |
| !! | TTTCTTATACTAATCTGATT+TGG | - | chr3_2:34405972-34405991 | None:intergenic | 20.0% |
| !!! | TTATTAGTTTCAACTTATTC+AGG | + | chr3_2:34406239-34406258 | Msa0403830:intron | 20.0% |
| !! | TCTAAGAAAAATTAAATTGC+AGG | - | chr3_2:34406545-34406564 | None:intergenic | 20.0% |
| !!! | AAGTTTTCATACTTCAATTT+CGG | - | chr3_2:34406779-34406798 | None:intergenic | 20.0% |
| ! | CTTTAGTATTATTATGGGTT+TGG | + | chr3_2:34404132-34404151 | Msa0403830:intron | 25.0% |
| ! | TAGAATAGAAGAAGAATACA+CGG | - | chr3_2:34404372-34404391 | None:intergenic | 25.0% |
| !! | ATTGTTTCTTTGTAAACTGT+AGG | + | chr3_2:34404421-34404440 | Msa0403830:intron | 25.0% |
| ! | TGGAAAAATGATAAAAGAGA+TGG | + | chr3_2:34404699-34404718 | Msa0403830:intron | 25.0% |
| !! | AATGATTTTGTACATGGATA+TGG | + | chr3_2:34404774-34404793 | Msa0403830:intron | 25.0% |
| ! | GAGTTTATAGATATGCAAAT+TGG | + | chr3_2:34404892-34404911 | Msa0403830:intron | 25.0% |
| !! | TTTTATCGTTGTATGTCAAA+TGG | + | chr3_2:34405131-34405150 | Msa0403830:intron | 25.0% |
| ! | TCATTGCAGATTTCAAATAA+AGG | + | chr3_2:34405482-34405501 | Msa0403830:intron | 25.0% |
| !!! | TTATGTGTTACTTCTGAATA+CGG | - | chr3_2:34405590-34405609 | None:intergenic | 25.0% |
| !!! | GATTCATATAATAGCTTTGA+TGG | - | chr3_2:34405705-34405724 | None:intergenic | 25.0% |
| !! | GTCAAATGATTTTCTACATA+AGG | - | chr3_2:34405870-34405889 | None:intergenic | 25.0% |
| !! | TCTTATACTAATCTGATTTG+GGG | - | chr3_2:34405970-34405989 | None:intergenic | 25.0% |
| !! | AGTCATATTACTGTTTTATC+TGG | - | chr3_2:34406276-34406295 | None:intergenic | 25.0% |
| !! | AAAATAATTTTCTGGATTCC+TGG | - | chr3_2:34406624-34406643 | None:intergenic | 25.0% |
| ! | AAAAAAAACTCTAGGCATAT+TGG | + | chr3_2:34406926-34406945 | Msa0403830:intron | 25.0% |
| ! | AAAAAAACTCTAGGCATATT+GGG | + | chr3_2:34406927-34406946 | Msa0403830:intron | 25.0% |
| ! | GCATAGGAAAAATAAAACAT+TGG | - | chr3_2:34407046-34407065 | None:intergenic | 25.0% |
| TAGTATTATTATGGGTTTGG+TGG | + | chr3_2:34404135-34404154 | Msa0403830:intron | 30.0% | |
| ! | TACATTGGTAACATCAAGAA+TGG | + | chr3_2:34404477-34404496 | Msa0403830:CDS | 30.0% |
| !! | TGATGATGGATCAATATATG+AGG | + | chr3_2:34404533-34404552 | Msa0403830:CDS | 30.0% |
| !! | GATGATGGATCAATATATGA+GGG | + | chr3_2:34404534-34404553 | Msa0403830:CDS | 30.0% |
| ATCAATATATGAGGGTGATT+GGG | + | chr3_2:34404542-34404561 | Msa0403830:CDS | 30.0% | |
| ACCTCCATTCTTATAAGTTT+GGG | - | chr3_2:34404664-34404683 | None:intergenic | 30.0% | |
| TACCTCCATTCTTATAAGTT+TGG | - | chr3_2:34404665-34404684 | None:intergenic | 30.0% | |
| AATGATAAAAGAGATGGAAG+AGG | + | chr3_2:34404705-34404724 | Msa0403830:intron | 30.0% | |
| ATGATAAAAGAGATGGAAGA+GGG | + | chr3_2:34404706-34404725 | Msa0403830:intron | 30.0% | |
| ! | TGGTCAAATGATTTTGTACA+TGG | + | chr3_2:34404768-34404787 | Msa0403830:intron | 30.0% |
| ! | GAGTTTCTAGATTTGCAAAT+GGG | + | chr3_2:34404796-34404815 | Msa0403830:intron | 30.0% |
| ! | AGTTTCTAGATTTGCAAATG+GGG | + | chr3_2:34404797-34404816 | Msa0403830:intron | 30.0% |
| TGGAAAAAAAATGAAAGGGA+TGG | + | chr3_2:34404933-34404952 | Msa0403830:intron | 30.0% | |
| AAATTGGAAAACAGGGAAAA+TGG | + | chr3_2:34405067-34405086 | Msa0403830:intron | 30.0% | |
| GGAGTTTATAGATTTGCAAA+TGG | + | chr3_2:34405170-34405189 | Msa0403830:intron | 30.0% | |
| AAAGACAAAATGGATGAAAC+AGG | + | chr3_2:34405218-34405237 | Msa0403830:intron | 30.0% | |
| AAGACAAAATGGATGAAACA+GGG | + | chr3_2:34405219-34405238 | Msa0403830:intron | 30.0% | |
| ! | AATGGACTTATACATGGATA+TGG | + | chr3_2:34405287-34405306 | Msa0403830:intron | 30.0% |
| TCAATTGGAACAATAAACGA+GGG | + | chr3_2:34405386-34405405 | Msa0403830:intron | 30.0% | |
| GTTAAAAAAGTGACAGAGAA+AGG | + | chr3_2:34405419-34405438 | Msa0403830:intron | 30.0% | |
| ! | ATTTGAAATCTGCAATGAAG+TGG | - | chr3_2:34405480-34405499 | None:intergenic | 30.0% |
| TTCAAATAAAGGTAAGTCTG+AGG | + | chr3_2:34405493-34405512 | Msa0403830:intron | 30.0% | |
| !! | ATTCCCTTTTGATAACCAAA+GGG | - | chr3_2:34405532-34405551 | None:intergenic | 30.0% |
| !! | TATTCCCTTTTGATAACCAA+AGG | - | chr3_2:34405533-34405552 | None:intergenic | 30.0% |
| ATCAAAAGGGAATATATGCA+AGG | + | chr3_2:34405539-34405558 | Msa0403830:intron | 30.0% | |
| ATGAATCTTAATCTGCAACT+TGG | + | chr3_2:34405718-34405737 | Msa0403830:intron | 30.0% | |
| TGAAAGAAAGGTGATAATAG+TGG | - | chr3_2:34405810-34405829 | None:intergenic | 30.0% | |
| GTATAGAACAGTTGAAAGAA+AGG | - | chr3_2:34405822-34405841 | None:intergenic | 30.0% | |
| ! | CTGACATGAACATTTTGTTA+TGG | + | chr3_2:34406043-34406062 | Msa0403830:intron | 30.0% |
| GAGAATGTAAACAGATTAAG+AGG | + | chr3_2:34406069-34406088 | Msa0403830:intron | 30.0% | |
| CATCTAATGACATGTTGATA+GGG | + | chr3_2:34406687-34406706 | Msa0403830:intron | 30.0% | |
| AAAAAACTCTAGGCATATTG+GGG | + | chr3_2:34406928-34406947 | Msa0403830:intron | 30.0% | |
| ! | CATATTCATGATTTTTGTCG+CGG | - | chr3_2:34406978-34406997 | None:intergenic | 30.0% |
| TAATTCATGCTCTTGTGTGT+TGG | + | chr3_2:34404187-34404206 | Msa0403830:intron | 35.0% | |
| AAATGCATACATGCATGTTG+TGG | - | chr3_2:34404326-34404345 | None:intergenic | 35.0% | |
| AACATGCATGTATGCATTTG+TGG | + | chr3_2:34404327-34404346 | Msa0403830:intron | 35.0% | |
| AAAGATGTTGTATTCAGACG+AGG | + | chr3_2:34404449-34404468 | Msa0403830:CDS | 35.0% | |
| AAGATGTTGTATTCAGACGA+GGG | + | chr3_2:34404450-34404469 | Msa0403830:CDS | 35.0% | |
| AAGTACACATGGTTTGATGA+TGG | + | chr3_2:34404519-34404538 | Msa0403830:CDS | 35.0% | |
| GATCAATATATGAGGGTGAT+TGG | + | chr3_2:34404541-34404560 | Msa0403830:CDS | 35.0% | |
| AAGTATGAGGGTGAATTCTT+TGG | + | chr3_2:34404615-34404634 | Msa0403830:intron | 35.0% | |
| AGTATGAGGGTGAATTCTTT+GGG | + | chr3_2:34404616-34404635 | Msa0403830:intron | 35.0% | |
| ACCCAAACTTATAAGAATGG+AGG | + | chr3_2:34404660-34404679 | Msa0403830:intron | 35.0% | |
| !! | GCTAATGGTGATGTTTTTGA+TGG | + | chr3_2:34404741-34404760 | Msa0403830:intron | 35.0% |
| !! | GTGATGTTTTTGATGGTTGT+TGG | + | chr3_2:34404748-34404767 | Msa0403830:intron | 35.0% |
| ! | GGAGTTTCTAGATTTGCAAA+TGG | + | chr3_2:34404795-34404814 | Msa0403830:intron | 35.0% |
| TACATTGGAAATTGGACTTG+TGG | + | chr3_2:34404825-34404844 | Msa0403830:intron | 35.0% | |
| !! | ACTTGTGGTGATGTTTTTGA+TGG | + | chr3_2:34404840-34404859 | Msa0403830:intron | 35.0% |
| AAAAATGAAAGGGATGGATC+AGG | + | chr3_2:34404939-34404958 | Msa0403830:intron | 35.0% | |
| AAAATGAAAGGGATGGATCA+GGG | + | chr3_2:34404940-34404959 | Msa0403830:intron | 35.0% | |
| TTCTATGGTTGTTGGTCAAA+TGG | + | chr3_2:34404990-34405009 | Msa0403830:intron | 35.0% | |
| ! | AATGGACTTCAACATGGATA+TGG | + | chr3_2:34405008-34405027 | Msa0403830:intron | 35.0% |
| GAGTTTATAGATCCGCAAAT+GGG | + | chr3_2:34405030-34405049 | Msa0403830:intron | 35.0% | |
| AAAACAGGGAAAATGGATGT+TGG | + | chr3_2:34405074-34405093 | Msa0403830:intron | 35.0% | |
| AAACAGGGAAAATGGATGTT+GGG | + | chr3_2:34405075-34405094 | Msa0403830:intron | 35.0% | |
| ! | CAGATTTTCGATTGCACTAA+TGG | + | chr3_2:34405101-34405120 | Msa0403830:intron | 35.0% |
| ! | ATGTCAAATGGACTTAGACA+TGG | + | chr3_2:34405143-34405162 | Msa0403830:intron | 35.0% |
| ! | AATGGACTTAGACATGGATT+TGG | + | chr3_2:34405149-34405168 | Msa0403830:intron | 35.0% |
| ATGAAACAGGGATTATGAGT+TGG | + | chr3_2:34405231-34405250 | Msa0403830:intron | 35.0% | |
| TGAAACAGGGATTATGAGTT+GGG | + | chr3_2:34405232-34405251 | Msa0403830:intron | 35.0% | |
| ! | TTTGATGGTTGTTGGTCAAA+TGG | + | chr3_2:34404756-34404775 | Msa0403830:intron | 35.0% |
| ! | TGGTCAAATGGACTTATACA+TGG | + | chr3_2:34405281-34405300 | Msa0403830:intron | 35.0% |
| ATATGGAGTTTATGCTAACG+AGG | + | chr3_2:34405304-34405323 | Msa0403830:intron | 35.0% | |
| AGTAAACTTCTCCATGACAA+TGG | + | chr3_2:34405350-34405369 | Msa0403830:intron | 35.0% | |
| ! | GTGTGTATTTTCCATTGTCA+TGG | - | chr3_2:34405364-34405383 | None:intergenic | 35.0% |
| CTCAATTGGAACAATAAACG+AGG | + | chr3_2:34405385-34405404 | Msa0403830:intron | 35.0% | |
| AACAATAAACGAGGGTGATT+GGG | + | chr3_2:34405394-34405413 | Msa0403830:intron | 35.0% | |
| TATGCAAGGAGTTCTTATTG+TGG | + | chr3_2:34405553-34405572 | Msa0403830:intron | 35.0% | |
| AAAGAAGAGATCGTGCATAT+GGG | + | chr3_2:34405667-34405686 | Msa0403830:intron | 35.0% | |
| ! | CATTTGACTTATAGGGTAGA+TGG | + | chr3_2:34405882-34405901 | Msa0403830:intron | 35.0% |
| AATTCCACAAGAAAATCCGA+AGG | + | chr3_2:34406098-34406117 | Msa0403830:intron | 35.0% | |
| ATTCCACAAGAAAATCCGAA+GGG | + | chr3_2:34406099-34406118 | Msa0403830:intron | 35.0% | |
| ! | ATTAAGAGCGTAATCCAGAT+GGG | + | chr3_2:34406146-34406165 | Msa0403830:intron | 35.0% |
| ATAGGAATGAAGAACGTGAT+AGG | + | chr3_2:34406331-34406350 | Msa0403830:intron | 35.0% | |
| !!! | TCTTTGGTAGCTAGCTTTTA+GGG | + | chr3_2:34406428-34406447 | Msa0403830:intron | 35.0% |
| CAGATGGTAAATTACTAACC+AGG | + | chr3_2:34406603-34406622 | Msa0403830:intron | 35.0% | |
| GCATCTAATGACATGTTGAT+AGG | + | chr3_2:34406686-34406705 | Msa0403830:intron | 35.0% | |
| ! | TTTGGCTTACCATCAAGTTT+GGG | - | chr3_2:34406723-34406742 | None:intergenic | 35.0% |
| ! | ATTTGGCTTACCATCAAGTT+TGG | - | chr3_2:34406724-34406743 | None:intergenic | 35.0% |
| TTTGGGAAAAACATTCAGTC+TGG | + | chr3_2:34406851-34406870 | Msa0403830:intron | 35.0% | |
| ACTGTTCAGTTATGGAGTAT+CGG | + | chr3_2:34406880-34406899 | Msa0403830:intron | 35.0% | |
| AAAAACTCTAGGCATATTGG+GGG | + | chr3_2:34406929-34406948 | Msa0403830:intron | 35.0% | |
| ! | ATCAAGAATGGACTTGCTCA+TGG | + | chr3_2:34404489-34404508 | Msa0403830:CDS | 40.0% |
| ! | ATGGCAAAGGAAAGTACACA+TGG | + | chr3_2:34404508-34404527 | Msa0403830:CDS | 40.0% |
| ! | TTCTTTGGGAATTTCCGTCA+TGG | + | chr3_2:34404630-34404649 | Msa0403830:intron | 40.0% |
| GGCACCCAAACTTATAAGAA+TGG | + | chr3_2:34404657-34404676 | Msa0403830:intron | 40.0% | |
| AAGAATGGAGGTAGCTACAT+TGG | + | chr3_2:34404672-34404691 | Msa0403830:intron | 40.0% | |
| GAGGTAGCTACATTGGAAAT+TGG | + | chr3_2:34404679-34404698 | Msa0403830:intron | 40.0% | |
| GGGATGTCTACATTGGAAAT+TGG | + | chr3_2:34404817-34404836 | Msa0403830:intron | 40.0% | |
| TCAATTGCGCTTCATGGATT+TGG | + | chr3_2:34404870-34404889 | Msa0403830:intron | 40.0% | |
| GCAAATTGGGCTGTCTATAT+CGG | + | chr3_2:34404906-34404925 | Msa0403830:intron | 40.0% | |
| ATGGATCAGGGATTATGAGT+TGG | + | chr3_2:34404952-34404971 | Msa0403830:intron | 40.0% | |
| TGGATCAGGGATTATGAGTT+GGG | + | chr3_2:34404953-34404972 | Msa0403830:intron | 40.0% | |
| ! | GATACTGGTGATGTCTTCTA+TGG | + | chr3_2:34404975-34404994 | Msa0403830:intron | 40.0% |
| GTGATGTCTTCTATGGTTGT+TGG | + | chr3_2:34404982-34405001 | Msa0403830:intron | 40.0% | |
| ! | TGGTCAAATGGACTTCAACA+TGG | + | chr3_2:34405002-34405021 | Msa0403830:intron | 40.0% |
| GGAGTTTATAGATCCGCAAA+TGG | + | chr3_2:34405029-34405048 | Msa0403830:intron | 40.0% | |
| TCCACTGGAAATTGGAAAAC+AGG | + | chr3_2:34405059-34405078 | Msa0403830:intron | 40.0% | |
| CCACTGGAAATTGGAAAACA+GGG | + | chr3_2:34405060-34405079 | Msa0403830:intron | 40.0% | |
| ! | GCAAATGGTGATGTCTACAT+CGG | + | chr3_2:34405185-34405204 | Msa0403830:intron | 40.0% |
| ! | GTGATGTCTTTGATGGTTGT+TGG | + | chr3_2:34405261-34405280 | Msa0403830:intron | 40.0% |
| GGAAAATACACACGCTCAAT+TGG | + | chr3_2:34405371-34405390 | Msa0403830:intron | 40.0% | |
| GAACAATAAACGAGGGTGAT+TGG | + | chr3_2:34405393-34405412 | Msa0403830:intron | 40.0% | |
| AGAGAAAGGCCTGAAGATAT+GGG | + | chr3_2:34405433-34405452 | Msa0403830:intron | 40.0% | |
| TGAGCCCTTTGGTTATCAAA+AGG | + | chr3_2:34405525-34405544 | Msa0403830:intron | 40.0% | |
| GAGCCCTTTGGTTATCAAAA+GGG | + | chr3_2:34405526-34405545 | Msa0403830:intron | 40.0% | |
| CAAAGAAGAGATCGTGCATA+TGG | + | chr3_2:34405666-34405685 | Msa0403830:intron | 40.0% | |
| TTAATCTGCAACTTGGCATC+AGG | + | chr3_2:34405725-34405744 | Msa0403830:intron | 40.0% | |
| TTCCACAAGAAAATCCGAAG+GGG | + | chr3_2:34406100-34406119 | Msa0403830:intron | 40.0% | |
| CGCTCTTAATCAATGATGAG+TGG | - | chr3_2:34406136-34406155 | None:intergenic | 40.0% | |
| ! | GATTAAGAGCGTAATCCAGA+TGG | + | chr3_2:34406145-34406164 | Msa0403830:intron | 40.0% |
| ATACTAAATAGCCTCCCATC+TGG | - | chr3_2:34406163-34406182 | None:intergenic | 40.0% | |
| !! | ATAGGTACTCGAGAGTGTTA+TGG | + | chr3_2:34406349-34406368 | Msa0403830:intron | 40.0% |
| !! | TAGGTACTCGAGAGTGTTAT+GGG | + | chr3_2:34406350-34406369 | Msa0403830:intron | 40.0% |
| TTCTATCGAGTGTGAGACTT+GGG | - | chr3_2:34406379-34406398 | None:intergenic | 40.0% | |
| ATTCTATCGAGTGTGAGACT+TGG | - | chr3_2:34406380-34406399 | None:intergenic | 40.0% | |
| AAGTCTCACACTCGATAGAA+TGG | + | chr3_2:34406379-34406398 | Msa0403830:intron | 40.0% | |
| AGTCTCACACTCGATAGAAT+GGG | + | chr3_2:34406380-34406399 | Msa0403830:intron | 40.0% | |
| CTAAAAGCTAGCTACCAAAG+AGG | - | chr3_2:34406429-34406448 | None:intergenic | 40.0% | |
| !!! | CTCTTTGGTAGCTAGCTTTT+AGG | + | chr3_2:34406427-34406446 | Msa0403830:intron | 40.0% |
| GACTTGTATCTAAGCACTTG+AGG | - | chr3_2:34406460-34406479 | None:intergenic | 40.0% | |
| CATCAAGTTTGGGTAAGTCT+TGG | - | chr3_2:34406713-34406732 | None:intergenic | 40.0% | |
| CAAGACTTACCCAAACTTGA+TGG | + | chr3_2:34406711-34406730 | Msa0403830:intron | 40.0% | |
| !!! | GCCATGTATATTTTGACCTG+TGG | + | chr3_2:34406813-34406832 | Msa0403830:intron | 40.0% |
| GCCACAGGTCAAAATATACA+TGG | - | chr3_2:34406817-34406836 | None:intergenic | 40.0% | |
| TGGCTGAGACAAATAGAGTT+TGG | + | chr3_2:34406833-34406852 | Msa0403830:intron | 40.0% | |
| GGCTGAGACAAATAGAGTTT+GGG | + | chr3_2:34406834-34406853 | Msa0403830:intron | 40.0% | |
| GGTGTATGACTGTTCAGTTA+TGG | + | chr3_2:34406872-34406891 | Msa0403830:intron | 40.0% | |
| TATCTGCATGTGTGAGCTGA+TGG | + | chr3_2:34404220-34404239 | Msa0403830:intron | 45.0% | |
| ATCTGCATGTGTGAGCTGAT+GGG | + | chr3_2:34404221-34404240 | Msa0403830:intron | 45.0% | |
| ! | AATGGACTTGCTCATGGCAA+AGG | + | chr3_2:34404495-34404514 | Msa0403830:CDS | 45.0% |
| !! | TATGAGGGTGATTGGGTTGA+TGG | + | chr3_2:34404549-34404568 | Msa0403830:CDS | 45.0% |
| !! | TGGGTTGATGGAGATAAGAC+AGG | + | chr3_2:34404561-34404580 | Msa0403830:CDS | 45.0% |
| !! | GGGTTGATGGAGATAAGACA+GGG | + | chr3_2:34404562-34404581 | Msa0403830:CDS | 45.0% |
| GATGGAGATAAGACAGGGAA+AGG | + | chr3_2:34404567-34404586 | Msa0403830:CDS | 45.0% | |
| CCATCAGGAGACAAGTATGA+GGG | + | chr3_2:34404603-34404622 | Msa0403830:intron | 45.0% | |
| TGGAAGAGGGATTGAGACTT+CGG | + | chr3_2:34404719-34404738 | Msa0403830:intron | 45.0% | |
| GCAAATGGGGATGTCTACAT+TGG | + | chr3_2:34404810-34404829 | Msa0403830:intron | 45.0% | |
| TGTCGATCAATTGCGCTTCA+TGG | + | chr3_2:34404864-34404883 | Msa0403830:intron | 45.0% | |
| GGGCTGTCTATATCGGAATT+TGG | + | chr3_2:34404913-34404932 | Msa0403830:intron | 45.0% | |
| ! | GGGATTATGAGTTGGGATAC+TGG | + | chr3_2:34404960-34404979 | Msa0403830:intron | 45.0% |
| AGTGGAGACATACCCATTTG+CGG | - | chr3_2:34405045-34405064 | None:intergenic | 45.0% | |
| GGTATGTCTCCACTGGAAAT+TGG | + | chr3_2:34405051-34405070 | Msa0403830:intron | 45.0% | |
| ! | CCCTGTTTTCCAATTTCCAG+TGG | - | chr3_2:34405063-34405082 | None:intergenic | 45.0% |
| GCTAACGAGGATGTCGATAT+TGG | + | chr3_2:34405317-34405336 | Msa0403830:intron | 45.0% | |
| CAGAGAAAGGCCTGAAGATA+TGG | + | chr3_2:34405432-34405451 | Msa0403830:intron | 45.0% | |
| TTTGAAGGGCCCATATCTTC+AGG | - | chr3_2:34405445-34405464 | None:intergenic | 45.0% | |
| ! | GGAACCATCGGGATTTTGAA+GGG | - | chr3_2:34405459-34405478 | None:intergenic | 45.0% |
| ! | TGGAACCATCGGGATTTTGA+AGG | - | chr3_2:34405460-34405479 | None:intergenic | 45.0% |
| TGCAATGAAGTGGAACCATC+GGG | - | chr3_2:34405470-34405489 | None:intergenic | 45.0% | |
| CTGCAATGAAGTGGAACCAT+CGG | - | chr3_2:34405471-34405490 | None:intergenic | 45.0% | |
| ! | AAAGGTAAGTCTGAGGCATC+TGG | + | chr3_2:34405500-34405519 | Msa0403830:intron | 45.0% |
| ! | AACCCCTTCGGATTTTCTTG+TGG | - | chr3_2:34406105-34406124 | None:intergenic | 45.0% |
| GTGGAAAAACTGAACCCCTT+CGG | - | chr3_2:34406117-34406136 | None:intergenic | 45.0% | |
| !! | AGGTACTCGAGAGTGTTATG+GGG | + | chr3_2:34406351-34406370 | Msa0403830:intron | 45.0% |
| ACTCGATAGAATGGGATGCT+TGG | + | chr3_2:34406388-34406407 | Msa0403830:intron | 45.0% | |
| ! | GGAGTGTTTAAGTGCCTCTT+TGG | + | chr3_2:34406412-34406431 | Msa0403830:intron | 45.0% |
| !!! | TTGGTAGCTAGCTTTTAGGG+AGG | + | chr3_2:34406431-34406450 | Msa0403830:intron | 45.0% |
| !!! | TGGTAGCTAGCTTTTAGGGA+GGG | + | chr3_2:34406432-34406451 | Msa0403830:intron | 45.0% |
| TGCAGATCTCAACAGGTAAG+AGG | - | chr3_2:34406580-34406599 | None:intergenic | 45.0% | |
| TCTGCATTGCAGATCTCAAC+AGG | - | chr3_2:34406587-34406606 | None:intergenic | 45.0% | |
| GTTGAGATCTGCAATGCAGA+TGG | + | chr3_2:34406587-34406606 | Msa0403830:intron | 45.0% | |
| ACTCTATTTGTCTCAGCCAC+AGG | - | chr3_2:34406832-34406851 | None:intergenic | 45.0% | |
| TCGCGGTATCCTTATCCTAT+CGG | - | chr3_2:34406961-34406980 | None:intergenic | 45.0% | |
| CATCGTCATGATCTCTGCAT+AGG | - | chr3_2:34407062-34407081 | None:intergenic | 45.0% | |
| GAGATCATGACGATGCGAAA+TGG | + | chr3_2:34407067-34407086 | Msa0403830:intron | 45.0% | |
| !! | TAAGAAATAATTTATAATAT+AGG | + | chr3_2:34405985-34406004 | Msa0403830:intron | 5.0% |
| TCTGCATGTGTGAGCTGATG+GGG | + | chr3_2:34404222-34404241 | Msa0403830:intron | 50.0% | |
| !! | TCAGACGAGGGTGTCTACAT+TGG | + | chr3_2:34404462-34404481 | Msa0403830:CDS | 50.0% |
| GGACTGTTCATAGAGCCATC+AGG | + | chr3_2:34404588-34404607 | Msa0403830:CDS | 50.0% | |
| GCCATCAGGAGACAAGTATG+AGG | + | chr3_2:34404602-34404621 | Msa0403830:intron | 50.0% | |
| CCCTCATACTTGTCTCCTGA+TGG | - | chr3_2:34404606-34404625 | None:intergenic | 50.0% | |
| GGGAATTTCCGTCATGGCAA+TGG | + | chr3_2:34404636-34404655 | Msa0403830:intron | 50.0% | |
| !! | TTTGGGTGCCATTGCCATGA+CGG | - | chr3_2:34404647-34404666 | None:intergenic | 50.0% |
| GGGATTGAGACTTCGGCTAA+TGG | + | chr3_2:34404726-34404745 | Msa0403830:intron | 50.0% | |
| GCAAATGGGTATGTCTCCAC+TGG | + | chr3_2:34405044-34405063 | Msa0403830:intron | 50.0% | |
| ! | GCTGCTGGTGATGTCTTTGA+TGG | + | chr3_2:34405254-34405273 | Msa0403830:intron | 50.0% |
| ! | AAGAGCGTAATCCAGATGGG+AGG | + | chr3_2:34406149-34406168 | Msa0403830:intron | 50.0% |
| CGATAGAATGGGATGCTTGG+TGG | + | chr3_2:34406391-34406410 | Msa0403830:intron | 50.0% | |
| GTGTGAGCTGATGGGGTTGT+CGG | + | chr3_2:34404229-34404248 | Msa0403830:intron | 55.0% | |
| ! | GGGATTATGAGTTGGGCTGC+TGG | + | chr3_2:34405239-34405258 | Msa0403830:intron | 55.0% |
| TGGGCCCTTCAAAATCCCGA+TGG | + | chr3_2:34405452-34405471 | Msa0403830:intron | 55.0% | |
| TATTGGGGGACGTGTCCGAT+AGG | + | chr3_2:34406943-34406962 | Msa0403830:intron | 55.0% | |
| GGGACGTGTCCGATAGGATA+AGG | + | chr3_2:34406949-34406968 | Msa0403830:intron | 55.0% | |
| GGCATCTGGTCTGAGCCCTT+TGG | + | chr3_2:34405514-34405533 | Msa0403830:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 34404098 | 34407092 | 34404098 | ID=Msa0403830;Name=Msa0403830 |
| chr3_2 | mRNA | 34404098 | 34407092 | 34404098 | ID=Msa0403830-mRNA-1;Parent=Msa0403830;Name=Msa0403830-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.33|1|1|3|0|67 |
| chr3_2 | exon | 34404098 | 34404102 | 34404098 | ID=Msa0403830-mRNA-1:exon:6912;Parent=Msa0403830-mRNA-1 |
| chr3_2 | exon | 34404443 | 34404616 | 34404443 | ID=Msa0403830-mRNA-1:exon:6913;Parent=Msa0403830-mRNA-1 |
| chr3_2 | exon | 34407068 | 34407092 | 34407068 | ID=Msa0403830-mRNA-1:exon:6914;Parent=Msa0403830-mRNA-1 |
| chr3_2 | CDS | 34404098 | 34404102 | 34404098 | ID=Msa0403830-mRNA-1:cds;Parent=Msa0403830-mRNA-1 |
| chr3_2 | CDS | 34404443 | 34404616 | 34404443 | ID=Msa0403830-mRNA-1:cds;Parent=Msa0403830-mRNA-1 |
| chr3_2 | CDS | 34407068 | 34407092 | 34407068 | ID=Msa0403830-mRNA-1:cds;Parent=Msa0403830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
