AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0485680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485680 MtrunA17_Chr8g0385241 87.559 426 49 2 1 423 7 431 0.0 711
Msa0485680 MtrunA17_Chr8g0382971 58.074 353 127 5 71 423 22 353 6.50e-118 348
Msa0485680 MtrunA17_Chr8g0382971 50.859 291 104 4 1 278 22 286 7.37e-83 258
Msa0485680 MtrunA17_Chr8g0383551 55.460 348 95 10 124 423 32 367 7.68e-97 294
Msa0485680 MtrunA17_Chr8g0383551 41.200 250 108 8 2 225 26 262 1.37e-42 153
Msa0485680 MtrunA17_Chr4g0059911 48.089 314 137 6 92 386 2 308 8.76e-80 251
Msa0485680 MtrunA17_Chr4g0059911 50.352 284 103 5 8 277 13 272 9.59e-78 246
Msa0485680 MtrunA17_Chr4g0059911 37.981 208 94 4 1 184 76 272 8.63e-28 113
Msa0485680 MtrunA17_Chr8g0377671 50.752 266 120 2 71 336 17 271 5.44e-72 228
Msa0485680 MtrunA17_Chr8g0377671 54.393 239 94 3 3 228 19 255 3.16e-69 221
Msa0485680 MtrunA17_Chr8g0377671 42.308 208 106 2 1 195 63 269 4.54e-42 150
Msa0485680 MtrunA17_Chr8g0383331 69.697 165 48 2 173 336 1 164 1.17e-67 212
Msa0485680 MtrunA17_Chr8g0383331 48.370 184 57 3 97 266 4 163 2.68e-43 149
Msa0485680 MtrunA17_Chr8g0383331 54.000 150 68 1 128 277 2 150 6.08e-42 145
Msa0485680 MtrunA17_Chr8g0383331 45.000 160 77 3 1 160 1 149 1.49e-29 112
Msa0485680 MtrunA17_Chr2g0316611 37.978 366 165 7 3 345 35 361 4.41e-58 194
Msa0485680 MtrunA17_Chr2g0316611 40.865 208 112 3 1 208 171 367 4.32e-33 128
Msa0485680 MtrunA17_Chr2g0316611 48.780 123 62 1 8 130 247 368 4.52e-25 105
Msa0485680 MtrunA17_Chr2g0316611 64.407 59 20 1 8 66 316 373 1.13e-14 75.1
Msa0485680 MtrunA17_Chr6g0467061 37.879 330 193 3 3 332 18 335 1.59e-54 184
Msa0485680 MtrunA17_Chr6g0467061 31.359 287 163 2 52 338 20 272 1.03e-30 120
Msa0485680 MtrunA17_Chr6g0467061 32.394 213 142 2 141 352 7 218 1.35e-23 100
Msa0485680 MtrunA17_Chr6g0467061 33.953 215 108 3 1 192 131 334 3.82e-20 90.9
Msa0485680 MtrunA17_Chr8g0377191 50.481 208 92 3 71 278 9 205 1.29e-53 177
Msa0485680 MtrunA17_Chr8g0377191 52.356 191 77 2 8 185 16 205 6.16e-52 173
Msa0485680 MtrunA17_Chr8g0377191 51.295 193 80 2 52 231 13 204 3.56e-49 166
Msa0485680 MtrunA17_Chr8g0377191 41.081 185 85 2 177 338 13 196 2.32e-30 116
Msa0485680 MtrunA17_Chr8g0380791 35.380 342 160 10 119 415 12 337 2.24e-43 162
Msa0485680 MtrunA17_Chr8g0380791 49.153 177 76 2 8 171 17 192 2.88e-43 161
Msa0485680 MtrunA17_Chr8g0380791 38.857 175 94 1 53 214 15 189 9.71e-29 119
Msa0485680 MtrunA17_Chr2g0316631 34.314 306 166 4 3 308 35 305 4.59e-42 150
Msa0485680 MtrunA17_Chr2g0316631 32.432 296 162 5 51 346 36 293 3.20e-31 121
Msa0485680 MtrunA17_Chr2g0316631 31.963 219 115 4 119 337 35 219 1.67e-20 91.3
Msa0485680 MtrunA17_Chr2g0316631 36.567 134 79 2 215 346 26 155 7.31e-13 68.9
Msa0485680 MtrunA17_Chr8g0377211 46.108 167 56 4 7 173 22 154 9.74e-34 124
Msa0485680 MtrunA17_Chr8g0377211 43.275 171 73 1 166 336 9 155 1.22e-29 113
Msa0485680 MtrunA17_Chr8g0377211 45.714 140 65 2 89 228 11 139 2.09e-26 104
Msa0485680 MtrunA17_Chr3g0082501 35.204 196 103 3 9 181 69 263 3.96e-29 120
Msa0485680 MtrunA17_Chr3g0082501 30.392 204 118 3 94 274 61 263 2.97e-19 90.5
Msa0485680 MtrunA17_Chr3g0082501 29.384 211 138 3 119 329 63 262 1.06e-17 85.5
Msa0485680 MtrunA17_Chr8g0353121 37.500 184 101 2 9 179 58 240 4.89e-29 120
Msa0485680 MtrunA17_Chr8g0353121 29.091 220 122 2 98 317 54 239 2.35e-18 87.8
Msa0485680 MtrunA17_Chr8g0377221 35.616 219 89 6 1 168 2 219 1.50e-28 113
Msa0485680 MtrunA17_Chr8g0377221 29.297 256 137 6 47 301 1 213 2.52e-20 90.5
Msa0485680 MtrunA17_Chr8g0377221 38.261 115 71 0 223 337 5 119 2.76e-14 72.8
Msa0485680 MtrunA17_Chr5g0398011 53.211 109 49 2 2 109 32 139 9.58e-27 104
Msa0485680 MtrunA17_Chr5g0398011 36.364 121 67 2 51 171 35 145 4.42e-13 66.6
Msa0485680 MtrunA17_Chr5g0398011 36.752 117 74 0 222 338 34 150 2.08e-12 64.7
Msa0485680 MtrunA17_Chr5g0398011 64.583 48 16 1 4 51 104 150 3.23e-11 61.2
Msa0485680 MtrunA17_Chr5g0424111 35.683 227 105 4 35 254 174 366 8.43e-26 108
Msa0485680 MtrunA17_Chr5g0424111 35.749 207 121 3 113 318 190 385 1.36e-25 108
Msa0485680 MtrunA17_Chr5g0424111 35.602 191 111 4 2 191 195 374 3.23e-22 98.2
Msa0485680 MtrunA17_Chr5g0424111 28.358 201 118 2 143 343 187 361 1.94e-12 68.6
Msa0485680 MtrunA17_Chr1g0180261 35.795 176 99 2 9 171 56 230 1.31e-25 109
Msa0485680 MtrunA17_Chr1g0180261 32.402 179 115 3 112 289 36 209 4.58e-19 89.7
Msa0485680 MtrunA17_Chr1g0171491 35.751 193 113 2 9 201 66 247 2.88e-25 108
Msa0485680 MtrunA17_Chr1g0171491 29.596 223 123 2 49 271 59 247 1.14e-21 97.8
Msa0485680 MtrunA17_Chr1g0171491 32.979 188 116 1 27 214 60 237 3.92e-21 96.3
Msa0485680 MtrunA17_Chr1g0171491 33.529 170 102 2 2 171 82 240 8.93e-20 92.0
Msa0485680 MtrunA17_Chr3g0131001 37.313 201 92 3 8 208 59 225 4.20e-25 108
Msa0485680 MtrunA17_Chr3g0131001 35.152 165 96 2 2 166 76 229 9.77e-14 73.2
Msa0485680 MtrunA17_Chr3g0131001 30.493 223 137 6 132 350 57 265 1.17e-12 69.7
Msa0485680 MtrunA17_Chr3g0131001 31.863 204 105 3 51 254 55 224 9.05e-12 67.0
Msa0485680 MtrunA17_Chr3g0114791 35.079 191 112 3 2 191 183 362 1.66e-24 104
Msa0485680 MtrunA17_Chr3g0114791 33.333 189 113 2 38 213 172 360 1.12e-21 96.7
Msa0485680 MtrunA17_Chr3g0114791 34.946 186 110 3 115 300 180 354 1.52e-21 96.3
Msa0485680 MtrunA17_Chr3g0114791 27.684 177 104 1 148 324 180 332 6.62e-12 67.0
Msa0485680 MtrunA17_Chr7g0233351 33.824 204 115 4 103 306 184 367 5.40e-24 103
Msa0485680 MtrunA17_Chr7g0233351 31.746 189 119 1 27 215 191 369 9.72e-24 102
Msa0485680 MtrunA17_Chr7g0233351 31.308 214 113 2 70 283 188 367 1.63e-21 96.3
Msa0485680 MtrunA17_Chr7g0233351 34.677 124 80 1 9 132 243 365 1.08e-14 75.9
Msa0485680 MtrunA17_Chr7g0233351 29.474 190 108 2 152 341 191 354 6.61e-13 70.1
Msa0485680 MtrunA17_Chr7g0233351 40.385 104 61 1 8 111 265 367 3.42e-12 67.8
Msa0485680 MtrunA17_Chr8g0336161 33.696 184 121 1 123 306 190 372 3.93e-23 101
Msa0485680 MtrunA17_Chr8g0336161 34.091 176 103 2 53 215 199 374 4.52e-23 100
Msa0485680 MtrunA17_Chr8g0336161 34.043 188 113 2 2 189 195 371 1.32e-21 96.7
Msa0485680 MtrunA17_Chr8g0336161 32.243 214 111 2 70 283 193 372 1.37e-21 96.7
Msa0485680 MtrunA17_Chr8g0336161 31.579 190 104 4 152 341 196 359 1.37e-12 69.3
Msa0485680 MtrunA17_Chr5g0398021 48.571 105 53 1 4 108 13 116 1.13e-22 94.0
Msa0485680 MtrunA17_Chr3g0115111 35.500 200 94 4 9 207 62 227 3.39e-22 99.4
Msa0485680 MtrunA17_Chr3g0115111 30.973 226 120 4 51 274 57 248 7.28e-19 89.4
Msa0485680 MtrunA17_Chr3g0115111 34.177 158 93 2 3 160 80 226 1.46e-15 79.0
Msa0485680 MtrunA17_Chr7g0256301 36.126 191 105 3 2 186 63 242 4.00e-22 99.4
Msa0485680 MtrunA17_Chr7g0256301 28.962 183 119 2 119 301 70 241 2.24e-14 75.5
Msa0485680 MtrunA17_Chr4g0055371 33.333 189 115 2 1 189 169 346 4.67e-22 97.8
Msa0485680 MtrunA17_Chr4g0055371 30.208 192 124 1 27 218 171 352 5.38e-22 97.4
Msa0485680 MtrunA17_Chr4g0055371 31.527 203 128 3 116 318 168 359 1.47e-21 96.3
Msa0485680 MtrunA17_Chr4g0055371 29.000 200 116 2 142 341 161 334 3.98e-13 70.9
Msa0485680 MtrunA17_Chr5g0424301 36.810 163 93 1 49 211 67 219 2.88e-21 96.7
Msa0485680 MtrunA17_Chr5g0424301 33.161 193 95 3 9 201 74 232 6.18e-21 95.5
Msa0485680 MtrunA17_Chr5g0424301 33.728 169 110 2 2 170 90 256 8.95e-17 82.8
Msa0485680 MtrunA17_Chr5g0424301 28.922 204 109 3 89 290 59 228 6.70e-14 73.9
Msa0485680 MtrunA17_Chr8g0385201 36.686 169 95 3 15 183 42 198 1.68e-20 94.0
Msa0485680 MtrunA17_Chr8g0385201 36.585 164 93 2 51 213 30 183 1.62e-18 88.2
Msa0485680 MtrunA17_Chr8g0385201 37.838 148 79 2 2 137 52 198 4.61e-17 83.6
Msa0485680 MtrunA17_Chr8g0385201 29.474 190 116 5 112 297 22 197 9.18e-16 79.3
Msa0485680 MtrunA17_Chr8g0377201 68.333 60 19 0 266 325 1 60 2.65e-19 82.0
Msa0485680 MtrunA17_Chr8g0377201 49.351 77 29 1 97 173 4 70 6.69e-14 67.0
Msa0485680 MtrunA17_Chr8g0377201 52.459 61 29 0 221 281 2 62 4.56e-13 64.7
Msa0485680 MtrunA17_Chr8g0377201 50.769 65 32 0 128 192 2 66 4.62e-12 62.0
Msa0485680 MtrunA17_Chr3g0085921 65.385 52 18 0 223 274 10 61 1.16e-13 67.0
Msa0485680 MtrunA17_Chr3g0085921 60.377 53 21 0 129 181 9 61 7.56e-13 64.7
Msa0485680 MtrunA17_Chr3g0085921 57.377 61 25 1 168 228 2 61 2.02e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485680 AT1G60890.2 30.488 410 194 8 2 403 21 347 1.67e-41 157
Msa0485680 AT1G60890.1 30.488 410 194 8 2 403 9 335 1.80e-41 156
Msa0485680 AT1G10900.2 29.695 394 181 9 9 398 16 317 2.28e-34 136
Msa0485680 AT1G10900.2 37.647 170 95 2 3 172 33 191 4.56e-21 96.3
Msa0485680 AT1G10900.2 35.606 132 61 2 1 132 77 184 2.11e-14 75.9
Msa0485680 AT1G10900.1 29.695 394 181 9 9 398 16 317 2.28e-34 136
Msa0485680 AT1G10900.1 37.647 170 95 2 3 172 33 191 4.56e-21 96.3
Msa0485680 AT1G10900.1 35.606 132 61 2 1 132 77 184 2.11e-14 75.9
Msa0485680 AT1G10900.3 29.695 394 181 9 9 398 16 317 2.28e-34 136
Msa0485680 AT1G10900.3 37.647 170 95 2 3 172 33 191 4.56e-21 96.3
Msa0485680 AT1G10900.3 35.606 132 61 2 1 132 77 184 2.11e-14 75.9
Msa0485680 AT1G21980.1 35.047 214 103 4 8 221 80 257 2.90e-27 115
Msa0485680 AT1G21980.1 36.646 161 92 1 51 211 76 226 9.27e-22 98.6
Msa0485680 AT1G21980.1 33.537 164 98 2 2 165 97 249 1.84e-18 88.6
Msa0485680 AT1G21980.1 28.155 206 114 2 119 324 75 246 2.55e-15 78.6
Msa0485680 AT1G21980.1 29.412 204 133 2 97 300 76 268 1.92e-13 72.8
Msa0485680 AT2G41210.1 37.766 188 106 3 9 196 75 251 4.20e-27 114
Msa0485680 AT2G41210.1 32.275 189 108 4 2 181 91 268 6.85e-21 95.9
Msa0485680 AT2G41210.1 29.680 219 120 2 97 315 70 254 6.10e-19 89.7
Msa0485680 AT2G41210.1 29.348 184 94 4 110 293 62 209 7.96e-13 70.9
Msa0485680 AT3G07960.3 34.222 225 122 4 9 233 32 230 1.05e-25 110
Msa0485680 AT3G07960.3 34.211 190 105 3 2 182 48 226 2.34e-25 108
Msa0485680 AT3G07960.3 25.937 347 185 7 51 376 27 322 1.75e-22 100
Msa0485680 AT3G07960.2 34.222 225 122 4 9 233 32 230 1.24e-25 109
Msa0485680 AT3G07960.2 34.211 190 105 3 2 182 48 226 2.76e-25 108
Msa0485680 AT3G07960.2 25.937 347 185 7 51 376 27 322 2.09e-22 100
Msa0485680 AT3G07960.4 34.222 225 122 4 9 233 32 230 1.24e-25 109
Msa0485680 AT3G07960.4 34.211 190 105 3 2 182 48 226 2.76e-25 108
Msa0485680 AT3G07960.4 25.937 347 185 7 51 376 27 322 2.09e-22 100
Msa0485680 AT3G07960.1 35.500 200 115 3 9 208 32 217 1.68e-25 109
Msa0485680 AT3G07960.1 34.211 190 105 3 2 182 48 226 4.06e-25 108
Msa0485680 AT3G07960.1 25.937 347 185 7 51 376 27 322 3.56e-22 99.8
Msa0485680 AT3G56960.2 35.500 200 117 4 9 208 77 264 6.21e-25 108
Msa0485680 AT3G56960.2 31.746 189 109 3 2 181 93 270 3.96e-20 93.6
Msa0485680 AT3G56960.2 29.185 233 130 3 97 329 72 269 4.11e-20 93.6
Msa0485680 AT3G56960.1 35.500 200 117 4 9 208 77 264 6.21e-25 108
Msa0485680 AT3G56960.1 31.746 189 109 3 2 181 93 270 3.96e-20 93.6
Msa0485680 AT3G56960.1 29.185 233 130 3 97 329 72 269 4.11e-20 93.6
Msa0485680 AT3G09920.3 34.239 184 107 2 1 171 50 232 1.59e-24 107
Msa0485680 AT3G09920.3 35.795 176 100 4 119 293 52 215 1.10e-20 95.1
Msa0485680 AT3G09920.4 34.239 184 107 2 1 171 50 232 1.59e-24 107
Msa0485680 AT3G09920.4 35.795 176 100 4 119 293 52 215 1.10e-20 95.1
Msa0485680 AT3G09920.2 34.239 184 107 2 1 171 50 232 1.59e-24 107
Msa0485680 AT3G09920.2 35.795 176 100 4 119 293 52 215 1.10e-20 95.1
Msa0485680 AT3G09920.1 34.239 184 107 2 1 171 50 232 1.59e-24 107
Msa0485680 AT3G09920.1 35.795 176 100 4 119 293 52 215 1.10e-20 95.1
Msa0485680 AT1G77740.2 36.667 180 103 3 8 187 81 249 4.48e-24 105
Msa0485680 AT1G77740.2 35.366 164 95 2 2 165 98 250 1.90e-20 94.4
Msa0485680 AT1G77740.2 31.330 233 118 4 51 283 77 267 2.27e-20 94.4
Msa0485680 AT1G77740.2 29.012 162 91 1 132 293 79 216 4.44e-12 68.6
Msa0485680 AT1G77740.1 36.667 180 103 3 8 187 81 249 4.48e-24 105
Msa0485680 AT1G77740.1 35.366 164 95 2 2 165 98 250 1.90e-20 94.4
Msa0485680 AT1G77740.1 31.330 233 118 4 51 283 77 267 2.27e-20 94.4
Msa0485680 AT1G77740.1 29.012 162 91 1 132 293 79 216 4.44e-12 68.6
Msa0485680 AT1G77660.1 35.106 188 111 2 1 188 175 351 1.05e-23 102
Msa0485680 AT1G77660.1 33.491 212 125 3 115 321 173 373 1.19e-23 102
Msa0485680 AT1G77660.1 31.383 188 119 1 26 213 176 353 1.84e-21 96.3
Msa0485680 AT1G77660.1 38.281 128 78 1 9 136 229 355 1.18e-16 82.0
Msa0485680 AT2G26420.2 36.702 188 85 3 8 195 57 210 1.06e-23 104
Msa0485680 AT2G26420.2 32.995 197 98 2 98 294 54 216 8.03e-18 86.3
Msa0485680 AT2G26420.3 36.702 188 85 3 8 195 57 210 1.06e-23 104
Msa0485680 AT2G26420.3 32.995 197 98 2 98 294 54 216 8.03e-18 86.3
Msa0485680 AT2G26420.1 35.323 201 96 3 8 208 57 223 1.27e-23 103
Msa0485680 AT2G26420.1 32.995 197 98 2 98 294 54 216 8.75e-18 86.3
Msa0485680 AT2G35170.1 34.759 187 111 2 3 189 225 400 2.42e-23 102
Msa0485680 AT2G35170.1 32.973 185 113 3 116 300 222 395 7.94e-19 89.0
Msa0485680 AT2G35170.1 28.629 248 118 3 38 283 211 401 3.21e-18 87.0
Msa0485680 AT2G35170.1 30.857 175 118 2 169 343 219 390 9.35e-11 63.9
Msa0485680 AT4G17080.1 34.759 187 111 2 3 189 256 431 6.60e-23 101
Msa0485680 AT4G17080.1 31.250 208 109 3 93 300 253 426 2.55e-20 93.6
Msa0485680 AT4G17080.1 28.629 248 118 3 38 283 242 432 1.25e-18 88.6
Msa0485680 AT4G17080.1 29.834 181 124 2 161 341 242 419 4.39e-11 65.1
Msa0485680 AT4G17080.1 39.423 104 62 1 8 111 330 432 6.15e-11 64.7
Msa0485680 AT1G21920.2 32.381 210 126 3 115 319 169 367 7.21e-23 99.8
Msa0485680 AT1G21920.2 33.516 182 108 2 45 213 168 349 6.31e-22 97.1
Msa0485680 AT1G21920.2 30.811 185 94 3 1 162 171 344 3.88e-15 77.0
Msa0485680 AT1G21920.2 35.484 124 79 1 9 132 225 347 2.60e-13 71.2
Msa0485680 AT1G21920.2 27.602 221 124 3 148 358 169 363 6.66e-12 67.0
Msa0485680 AT1G21920.1 34.375 192 115 2 115 306 169 349 1.39e-22 99.4
Msa0485680 AT1G21920.1 33.516 182 108 2 45 213 168 349 1.12e-21 97.1
Msa0485680 AT1G21920.1 30.811 185 94 3 1 162 171 344 3.80e-15 77.4
Msa0485680 AT1G21920.1 35.484 124 79 1 9 132 225 347 3.00e-13 71.6
Msa0485680 AT1G21920.1 27.602 221 124 3 148 358 169 363 1.03e-11 66.6

Find 111 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTCCATTCTTATAAGTT+TGG 0.224406 3_4:+3417953 None:intergenic
GATTCATATAATAGCTTTGA+TGG 0.263410 3_4:+3416910 None:intergenic
GGGCTGTCTATATCGGAATT+TGG 0.280108 3_4:-3417699 Msa0485680:CDS
TTATGTGTTACTTCTGAATA+TGG 0.289129 3_4:+3417019 None:intergenic
ACCTCCATTCTTATAAGTTT+GGG 0.299872 3_4:+3417954 None:intergenic
GGGATGTCTCCACTGGAAAT+TGG 0.304984 3_4:-3417561 Msa0485680:CDS
AAATTGGAAAACAGGGAAAA+TGG 0.307307 3_4:-3417545 Msa0485680:CDS
AAGTATGAGGGTGAATTCTT+TGG 0.311574 3_4:-3418000 Msa0485680:CDS
GATACTGGTGATGTCTTCTA+TGG 0.312885 3_4:-3417637 Msa0485680:CDS
GCTGCTGGTGATGTCTTTGA+TGG 0.325581 3_4:-3417358 Msa0485680:CDS
CAGAGAAAGGCCTGAAGATA+TGG 0.327525 3_4:-3417174 Msa0485680:CDS
GGGATGTCTACATTGGAAAT+TGG 0.328769 3_4:-3417798 Msa0485680:CDS
TCCACTGGAAATTGGAAAAC+AGG 0.334764 3_4:-3417553 Msa0485680:CDS
TATGAGGGTGATTGGGTTGA+TGG 0.335707 3_4:-3418066 Msa0485680:CDS
GGAAAATACACACGCTCAAT+TGG 0.335840 3_4:-3417235 Msa0485680:CDS
AAATTTGACAAAAGACAAAA+TGG 0.343438 3_4:-3417404 Msa0485680:CDS
TTCTATGGTTGTTGGTCAAA+TGG 0.344466 3_4:-3417622 Msa0485680:CDS
AAAGACAAAATGGATGAAAC+AGG 0.358390 3_4:-3417394 Msa0485680:CDS
GATCAATATATGAGGGTGAT+TGG 0.359146 3_4:-3418074 Msa0485680:CDS
ATTGCGCTTAGACATGGATT+TGG 0.360799 3_4:-3417742 Msa0485680:CDS
TCATTGCAGATTTCAAATAA+AGG 0.363457 3_4:-3417124 Msa0485680:CDS
GAACAATAAACGAGGGTGAT+TGG 0.367652 3_4:-3417213 Msa0485680:CDS
GTGATGTCTTTGATGGTTGT+TGG 0.371599 3_4:-3417351 Msa0485680:CDS
AATGGACTTAGACATGGATT+TGG 0.376853 3_4:-3417463 Msa0485680:CDS
AATGGACTTATACATGGATA+TGG 0.378270 3_4:-3417325 Msa0485680:CDS
GCTAACGAGGATGTCGATAT+TGG 0.378942 3_4:-3417289 Msa0485680:CDS
TTTGATGGTTGTTGGTCAAA+TGG 0.381997 3_4:-3417859 Msa0485680:CDS
AATGGACTTCAACATGGATA+TGG 0.393948 3_4:-3417604 Msa0485680:CDS
GAGGTAGCTACATTGGAAAT+TGG 0.394936 3_4:-3417936 Msa0485680:CDS
TTTGATGGTTGTTGGTCAAA+TGG 0.395785 3_4:-3417343 Msa0485680:CDS
AACAATAAACGAGGGTGATT+GGG 0.398395 3_4:-3417212 Msa0485680:CDS
CAAAGAAGAGATCGTGCATA+TGG 0.398435 3_4:-3416946 Msa0485680:CDS
AGTATGAGGGTGAATTCTTT+GGG 0.399117 3_4:-3417999 Msa0485680:CDS
GCAAATGGGGCTGTCTATAT+CGG 0.400686 3_4:-3417706 Msa0485680:CDS
GGCATCTGGTCTGAGCCCTT+TGG 0.402901 3_4:-3417092 Msa0485680:CDS
GGGATTATGAGTTGGGATAC+TGG 0.413810 3_4:-3417652 Msa0485680:CDS
TTTGAAGGGCCCATATCTTC+AGG 0.413912 3_4:+3417164 None:intergenic
TGGATCAGGGATTATGAGTT+GGG 0.431926 3_4:-3417659 Msa0485680:CDS
GTGATGTCTTCTATGGTTGT+TGG 0.434669 3_4:-3417630 Msa0485680:CDS
TGAGCCCTTTGGTTATCAAA+AGG 0.442205 3_4:-3417081 Msa0485680:CDS
GGAGTTTATAGATATGCAAA+TGG 0.447368 3_4:-3417721 Msa0485680:CDS
TGGGTTGATGGAGATAAGAC+AGG 0.450163 3_4:-3418054 Msa0485680:CDS
GAGTTTATAGATATGCAAAT+GGG 0.450993 3_4:-3417720 Msa0485680:CDS
GGGATTGAGACTTCGGCTAA+TGG 0.453469 3_4:-3417889 Msa0485680:CDS
AAAGGTAAGTCTGAGGCATC+TGG 0.454416 3_4:-3417106 Msa0485680:CDS
ATTTGAAATCTGCAATGAAG+TGG 0.473202 3_4:+3417129 None:intergenic
TGATGATGGATCAATATATG+AGG 0.474674 3_4:-3418082 Msa0485680:CDS
CGATCAATTGCGCTTAGACA+TGG 0.475178 3_4:-3417748 Msa0485680:CDS
GAGTTTATAGATCCGCAAAT+GGG 0.476226 3_4:-3417582 Msa0485680:CDS
GGGAATTTCCGTCATGGCAA+TGG 0.478269 3_4:-3417979 Msa0485680:CDS
TACATTGGTAACATCAAGAA+TGG 0.480521 3_4:-3418138 Msa0485680:CDS
CCCTCATACTTGTCTCCTGA+TGG 0.482924 3_4:+3418012 None:intergenic
GGAGTTTATAGATCCGCAAA+TGG 0.482951 3_4:-3417583 Msa0485680:CDS
GGCACCCAAACTTATAAGAA+TGG 0.483958 3_4:-3417958 Msa0485680:CDS
AAACAGGGAAAATGGATGTT+GGG 0.487088 3_4:-3417537 Msa0485680:CDS
GGAGTTTATAGATTTGCAAA+TGG 0.487399 3_4:-3417442 Msa0485680:CDS
TGCAATGAAGTGGAACCATC+AGG 0.492197 3_4:+3417139 None:intergenic
GAGCCCTTTGGTTATCAAAA+GGG 0.495737 3_4:-3417080 Msa0485680:CDS
AAAACAGGGAAAATGGATGT+TGG 0.499221 3_4:-3417538 Msa0485680:CDS
AGAGAAAGGCCTGAAGATAT+GGG 0.500116 3_4:-3417173 Msa0485680:CDS
GCCATCAGGAGACAAGTATG+AGG 0.502897 3_4:-3418013 Msa0485680:CDS
TGGTCAAATGGACTTATACA+TGG 0.503975 3_4:-3417331 Msa0485680:CDS
GCAAATGGGGATGTCTCCAC+TGG 0.507526 3_4:-3417568 Msa0485680:CDS
AGTGGAGACATCCCCATTTG+CGG 0.507630 3_4:+3417570 None:intergenic
AAAATGAAAGGGATGGATCA+GGG 0.508482 3_4:-3417672 Msa0485680:CDS
AAGAATGGAGGTAGCTACAT+TGG 0.512285 3_4:-3417943 Msa0485680:CDS
GAGTTTCTAGATTTGCAGAT+GGG 0.514604 3_4:-3417819 Msa0485680:CDS
TGAAACAGGGATTATGAGTT+GGG 0.518447 3_4:-3417380 Msa0485680:CDS
ATCAATATATGAGGGTGATT+GGG 0.524240 3_4:-3418073 Msa0485680:CDS
ATGGATCAGGGATTATGAGT+TGG 0.528428 3_4:-3417660 Msa0485680:CDS
ATGAAACAGGGATTATGAGT+TGG 0.528516 3_4:-3417381 Msa0485680:CDS
AATGATAAAAGAGATGGAAG+AGG 0.531418 3_4:-3417910 Msa0485680:CDS
TGGAAGAGGGATTGAGACTT+CGG 0.536168 3_4:-3417896 Msa0485680:CDS
AAGTACACATGGTTTGATGA+TGG 0.536195 3_4:-3418096 Msa0485680:CDS
GGGATTATGAGTTGGGCTGC+TGG 0.543685 3_4:-3417373 Msa0485680:CDS
AATGGACTTGCTCATGGCAA+AGG 0.546265 3_4:-3418120 Msa0485680:CDS
AAAGAAGAGATCGTGCATAT+GGG 0.548304 3_4:-3416945 Msa0485680:CDS
TTTGGGTGCCATTGCCATGA+CGG 0.549134 3_4:+3417971 None:intergenic
TTCTTTGGGAATTTCCGTCA+TGG 0.551130 3_4:-3417985 Msa0485680:CDS
ATGATAAAAGAGATGGAAGA+GGG 0.554175 3_4:-3417909 Msa0485680:CDS
ATCAAGAATGGACTTGCTCA+TGG 0.558306 3_4:-3418126 Msa0485680:CDS
GGAGTTTCTAGATTTGCAGA+TGG 0.565453 3_4:-3417820 Msa0485680:CDS
GCAGATGGGGATGTCTACAT+TGG 0.568278 3_4:-3417805 Msa0485680:CDS
GATGGAGATAAGACAGGGAA+AGG 0.568932 3_4:-3418048 Msa0485680:CDS
TGGTCAAATGGACTTCAACA+TGG 0.576448 3_4:-3417610 Msa0485680:CDS
ATCAAAAGGGAATATATGCA+AGG 0.589384 3_4:-3417067 Msa0485680:CDS
CCACTGGAAATTGGAAAACA+GGG 0.596163 3_4:-3417552 Msa0485680:CDS
ATGTCAAATGGACTTAGACA+TGG 0.597161 3_4:-3417469 Msa0485680:CDS
AGTAAACTTCTCCATGACAA+TGG 0.599616 3_4:-3417256 Msa0485680:CDS
TTCAAATAAAGGTAAGTCTG+AGG 0.603610 3_4:-3417113 Msa0485680:CDS
GGACTGTTCATAGAGCCATC+AGG 0.607086 3_4:-3418027 Msa0485680:CDS
TACATTGGAAATTGGACTTG+TGG 0.609300 3_4:-3417790 Msa0485680:CDS
GCAAATGGTGATGTCTACAT+CGG 0.612093 3_4:-3417427 Msa0485680:CDS
TCAGACGAGGGTGTCTACAT+TGG 0.615373 3_4:-3418153 Msa0485680:CDS
AGTTTCTAGATTTGCAGATG+GGG 0.615817 3_4:-3417818 Msa0485680:CDS
GGGTTGATGGAGATAAGACA+GGG 0.616802 3_4:-3418053 Msa0485680:CDS
TGGGCCCTTCAAAATCCTGA+TGG 0.617949 3_4:-3417154 Msa0485680:CDS
GGAAAATGGATGTTGGGAGA+CGG 0.618462 3_4:-3417531 Msa0485680:CDS
CCATCAGGAGACAAGTATGA+GGG 0.619284 3_4:-3418012 Msa0485680:CDS
AAAGATGTTGTATTCAGACG+AGG 0.623934 3_4:-3418166 None:intergenic
AGTTTATAGATCCGCAAATG+GGG 0.634644 3_4:-3417581 Msa0485680:CDS
AAGATGTTGTATTCAGACGA+GGG 0.637143 3_4:-3418165 Msa0485680:CDS
TATGCAAGGAGTTCTTATTG+TGG 0.641870 3_4:-3417053 Msa0485680:CDS
ACCCAAACTTATAAGAATGG+AGG 0.651940 3_4:-3417955 Msa0485680:CDS
CTCAATTGGAACAATAAACG+AGG 0.654960 3_4:-3417221 Msa0485680:CDS
GATGATGGATCAATATATGA+GGG 0.656551 3_4:-3418081 Msa0485680:CDS
AGTTTATAGATATGCAAATG+GGG 0.670730 3_4:-3417719 Msa0485680:CDS
AAGACAAAATGGATGAAACA+GGG 0.684508 3_4:-3417393 Msa0485680:CDS
ATGGCAAAGGAAAGTACACA+TGG 0.689912 3_4:-3418107 Msa0485680:CDS
TCAATTGGAACAATAAACGA+GGG 0.715645 3_4:-3417220 Msa0485680:CDS
AGTTTATAGATATGCTAACG+AGG 0.727650 3_4:-3417302 Msa0485680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTGGAAAAAAAATGAAA+GGG - chr3_4:3417392-3417411 Msa0485680:CDS 15.0%
!! AATTTGGAAAAAAAATGAAA+GGG - chr3_4:3417392-3417411 Msa0485680:CDS 15.0%
!! GAATTTGGAAAAAAAATGAA+AGG - chr3_4:3417391-3417410 Msa0485680:CDS 20.0%
!! AAATTTGACAAAAGACAAAA+TGG - chr3_4:3417671-3417690 Msa0485680:CDS 20.0%
!! TAATAACAACAACAAAAAAC+AGG - chr3_4:3418085-3418104 Msa0485680:CDS 20.0%
!! AATAACAACAACAAAAAACA+GGG - chr3_4:3418086-3418105 Msa0485680:CDS 20.0%
!! GAATTTGGAAAAAAAATGAA+AGG - chr3_4:3417391-3417410 Msa0485680:CDS 20.0%
!! AAATTTGACAAAAGACAAAA+TGG - chr3_4:3417671-3417690 Msa0485680:CDS 20.0%
!! TAATAACAACAACAAAAAAC+AGG - chr3_4:3418085-3418104 Msa0485680:CDS 20.0%
!! AATAACAACAACAAAAAACA+GGG - chr3_4:3418086-3418105 Msa0485680:CDS 20.0%
! TGGAAAAATGATAAAAGAGA+TGG - chr3_4:3417159-3417178 Msa0485680:CDS 25.0%
! GAGTTTATAGATATGCAAAT+GGG - chr3_4:3417355-3417374 Msa0485680:CDS 25.0%
! AGTTTATAGATATGCAAATG+GGG - chr3_4:3417356-3417375 Msa0485680:CDS 25.0%
!! TTTTATCGTTGTATGTCAAA+TGG - chr3_4:3417594-3417613 Msa0485680:CDS 25.0%
! TCATTGCAGATTTCAAATAA+AGG - chr3_4:3417951-3417970 Msa0485680:CDS 25.0%
!!! TTATGTGTTACTTCTGAATA+TGG + chr3_4:3418059-3418078 None:intergenic 25.0%
! TGGAAAAATGATAAAAGAGA+TGG - chr3_4:3417159-3417178 Msa0485680:CDS 25.0%
! GAGTTTATAGATATGCAAAT+GGG - chr3_4:3417355-3417374 Msa0485680:CDS 25.0%
! AGTTTATAGATATGCAAATG+GGG - chr3_4:3417356-3417375 Msa0485680:CDS 25.0%
!! TTTTATCGTTGTATGTCAAA+TGG - chr3_4:3417594-3417613 Msa0485680:CDS 25.0%
! TCATTGCAGATTTCAAATAA+AGG - chr3_4:3417951-3417970 Msa0485680:CDS 25.0%
!!! TTATGTGTTACTTCTGAATA+TGG + chr3_4:3418059-3418078 None:intergenic 25.0%
! TACATTGGTAACATCAAGAA+TGG - chr3_4:3416937-3416956 Msa0485680:CDS 30.0%
!! TGATGATGGATCAATATATG+AGG - chr3_4:3416993-3417012 Msa0485680:CDS 30.0%
!! GATGATGGATCAATATATGA+GGG - chr3_4:3416994-3417013 Msa0485680:CDS 30.0%
ATCAATATATGAGGGTGATT+GGG - chr3_4:3417002-3417021 Msa0485680:CDS 30.0%
ACCTCCATTCTTATAAGTTT+GGG + chr3_4:3417124-3417143 None:intergenic 30.0%
TACCTCCATTCTTATAAGTT+TGG + chr3_4:3417125-3417144 None:intergenic 30.0%
AATGATAAAAGAGATGGAAG+AGG - chr3_4:3417165-3417184 Msa0485680:CDS 30.0%
ATGATAAAAGAGATGGAAGA+GGG - chr3_4:3417166-3417185 Msa0485680:CDS 30.0%
!!! AATGGTTTTGTACATGGATA+TGG - chr3_4:3417234-3417253 Msa0485680:CDS 30.0%
GGAGTTTATAGATATGCAAA+TGG - chr3_4:3417354-3417373 Msa0485680:CDS 30.0%
TGGAAAAAAAATGAAAGGGA+TGG - chr3_4:3417396-3417415 Msa0485680:CDS 30.0%
AAATTGGAAAACAGGGAAAA+TGG - chr3_4:3417530-3417549 Msa0485680:CDS 30.0%
GGAGTTTATAGATTTGCAAA+TGG - chr3_4:3417633-3417652 Msa0485680:CDS 30.0%
AAAGACAAAATGGATGAAAC+AGG - chr3_4:3417681-3417700 Msa0485680:CDS 30.0%
AAGACAAAATGGATGAAACA+GGG - chr3_4:3417682-3417701 Msa0485680:CDS 30.0%
! AATGGACTTATACATGGATA+TGG - chr3_4:3417750-3417769 Msa0485680:CDS 30.0%
AGTTTATAGATATGCTAACG+AGG - chr3_4:3417773-3417792 Msa0485680:CDS 30.0%
TCAATTGGAACAATAAACGA+GGG - chr3_4:3417855-3417874 Msa0485680:CDS 30.0%
GTTAAAAAAGTGACAGAGAA+AGG - chr3_4:3417888-3417907 Msa0485680:CDS 30.0%
! ATTTGAAATCTGCAATGAAG+TGG + chr3_4:3417949-3417968 None:intergenic 30.0%
TTCAAATAAAGGTAAGTCTG+AGG - chr3_4:3417962-3417981 Msa0485680:CDS 30.0%
!! ATTCCCTTTTGATAACCAAA+GGG + chr3_4:3418001-3418020 None:intergenic 30.0%
!! TATTCCCTTTTGATAACCAA+AGG + chr3_4:3418002-3418021 None:intergenic 30.0%
ATCAAAAGGGAATATATGCA+AGG - chr3_4:3418008-3418027 Msa0485680:CDS 30.0%
! TACATTGGTAACATCAAGAA+TGG - chr3_4:3416937-3416956 Msa0485680:CDS 30.0%
!! TGATGATGGATCAATATATG+AGG - chr3_4:3416993-3417012 Msa0485680:CDS 30.0%
!! GATGATGGATCAATATATGA+GGG - chr3_4:3416994-3417013 Msa0485680:CDS 30.0%
ATCAATATATGAGGGTGATT+GGG - chr3_4:3417002-3417021 Msa0485680:CDS 30.0%
ACCTCCATTCTTATAAGTTT+GGG + chr3_4:3417124-3417143 None:intergenic 30.0%
TACCTCCATTCTTATAAGTT+TGG + chr3_4:3417125-3417144 None:intergenic 30.0%
AATGATAAAAGAGATGGAAG+AGG - chr3_4:3417165-3417184 Msa0485680:CDS 30.0%
ATGATAAAAGAGATGGAAGA+GGG - chr3_4:3417166-3417185 Msa0485680:CDS 30.0%
!!! AATGGTTTTGTACATGGATA+TGG - chr3_4:3417234-3417253 Msa0485680:CDS 30.0%
GGAGTTTATAGATATGCAAA+TGG - chr3_4:3417354-3417373 Msa0485680:CDS 30.0%
TGGAAAAAAAATGAAAGGGA+TGG - chr3_4:3417396-3417415 Msa0485680:CDS 30.0%
AAATTGGAAAACAGGGAAAA+TGG - chr3_4:3417530-3417549 Msa0485680:CDS 30.0%
GGAGTTTATAGATTTGCAAA+TGG - chr3_4:3417633-3417652 Msa0485680:CDS 30.0%
AAAGACAAAATGGATGAAAC+AGG - chr3_4:3417681-3417700 Msa0485680:CDS 30.0%
AAGACAAAATGGATGAAACA+GGG - chr3_4:3417682-3417701 Msa0485680:CDS 30.0%
! AATGGACTTATACATGGATA+TGG - chr3_4:3417750-3417769 Msa0485680:CDS 30.0%
AGTTTATAGATATGCTAACG+AGG - chr3_4:3417773-3417792 Msa0485680:CDS 30.0%
TCAATTGGAACAATAAACGA+GGG - chr3_4:3417855-3417874 Msa0485680:CDS 30.0%
GTTAAAAAAGTGACAGAGAA+AGG - chr3_4:3417888-3417907 Msa0485680:CDS 30.0%
! ATTTGAAATCTGCAATGAAG+TGG + chr3_4:3417949-3417968 None:intergenic 30.0%
TTCAAATAAAGGTAAGTCTG+AGG - chr3_4:3417962-3417981 Msa0485680:CDS 30.0%
!! ATTCCCTTTTGATAACCAAA+GGG + chr3_4:3418001-3418020 None:intergenic 30.0%
!! TATTCCCTTTTGATAACCAA+AGG + chr3_4:3418002-3418021 None:intergenic 30.0%
ATCAAAAGGGAATATATGCA+AGG - chr3_4:3418008-3418027 Msa0485680:CDS 30.0%
AAGTACACATGGTTTGATGA+TGG - chr3_4:3416979-3416998 Msa0485680:CDS 35.0%
GATCAATATATGAGGGTGAT+TGG - chr3_4:3417001-3417020 Msa0485680:CDS 35.0%
AAGTATGAGGGTGAATTCTT+TGG - chr3_4:3417075-3417094 Msa0485680:CDS 35.0%
AGTATGAGGGTGAATTCTTT+GGG - chr3_4:3417076-3417095 Msa0485680:CDS 35.0%
ACCCAAACTTATAAGAATGG+AGG - chr3_4:3417120-3417139 Msa0485680:CDS 35.0%
!! GCTAATGGTGATGTTTTTGA+TGG - chr3_4:3417201-3417220 Msa0485680:CDS 35.0%
!! GTGATGTTTTTGATGGTTGT+TGG - chr3_4:3417208-3417227 Msa0485680:CDS 35.0%
! TTTGATGGTTGTTGGTCAAA+TGG - chr3_4:3417216-3417235 Msa0485680:CDS 35.0%
!!! TGGTCAAATGGTTTTGTACA+TGG - chr3_4:3417228-3417247 Msa0485680:CDS 35.0%
! GAGTTTCTAGATTTGCAGAT+GGG - chr3_4:3417256-3417275 Msa0485680:CDS 35.0%
! AGTTTCTAGATTTGCAGATG+GGG - chr3_4:3417257-3417276 Msa0485680:CDS 35.0%
TACATTGGAAATTGGACTTG+TGG - chr3_4:3417285-3417304 Msa0485680:CDS 35.0%
!! ACTTGTGGTGATGTTTTTGA+TGG - chr3_4:3417300-3417319 Msa0485680:CDS 35.0%
AAAAATGAAAGGGATGGATC+AGG - chr3_4:3417402-3417421 Msa0485680:CDS 35.0%
AAAATGAAAGGGATGGATCA+GGG - chr3_4:3417403-3417422 Msa0485680:CDS 35.0%
TTCTATGGTTGTTGGTCAAA+TGG - chr3_4:3417453-3417472 Msa0485680:CDS 35.0%
! AATGGACTTCAACATGGATA+TGG - chr3_4:3417471-3417490 Msa0485680:CDS 35.0%
GAGTTTATAGATCCGCAAAT+GGG - chr3_4:3417493-3417512 Msa0485680:CDS 35.0%
AGTTTATAGATCCGCAAATG+GGG - chr3_4:3417494-3417513 Msa0485680:CDS 35.0%
AAAACAGGGAAAATGGATGT+TGG - chr3_4:3417537-3417556 Msa0485680:CDS 35.0%
AAACAGGGAAAATGGATGTT+GGG - chr3_4:3417538-3417557 Msa0485680:CDS 35.0%
! ATGTCAAATGGACTTAGACA+TGG - chr3_4:3417606-3417625 Msa0485680:CDS 35.0%
! AATGGACTTAGACATGGATT+TGG - chr3_4:3417612-3417631 Msa0485680:CDS 35.0%
ATGAAACAGGGATTATGAGT+TGG - chr3_4:3417694-3417713 Msa0485680:CDS 35.0%
TGAAACAGGGATTATGAGTT+GGG - chr3_4:3417695-3417714 Msa0485680:CDS 35.0%
! TTTGATGGTTGTTGGTCAAA+TGG - chr3_4:3417216-3417235 Msa0485680:CDS 35.0%
! TGGTCAAATGGACTTATACA+TGG - chr3_4:3417744-3417763 Msa0485680:CDS 35.0%
AGTAAACTTCTCCATGACAA+TGG - chr3_4:3417819-3417838 Msa0485680:CDS 35.0%
! GTGTGTATTTTCCATTGTCA+TGG + chr3_4:3417833-3417852 None:intergenic 35.0%
CTCAATTGGAACAATAAACG+AGG - chr3_4:3417854-3417873 Msa0485680:CDS 35.0%
AACAATAAACGAGGGTGATT+GGG - chr3_4:3417863-3417882 Msa0485680:CDS 35.0%
TATGCAAGGAGTTCTTATTG+TGG - chr3_4:3418022-3418041 Msa0485680:CDS 35.0%
AAAGAAGAGATCGTGCATAT+GGG - chr3_4:3418130-3418149 Msa0485680:CDS 35.0%
AAGTACACATGGTTTGATGA+TGG - chr3_4:3416979-3416998 Msa0485680:CDS 35.0%
GATCAATATATGAGGGTGAT+TGG - chr3_4:3417001-3417020 Msa0485680:CDS 35.0%
AAGTATGAGGGTGAATTCTT+TGG - chr3_4:3417075-3417094 Msa0485680:CDS 35.0%
AGTATGAGGGTGAATTCTTT+GGG - chr3_4:3417076-3417095 Msa0485680:CDS 35.0%
ACCCAAACTTATAAGAATGG+AGG - chr3_4:3417120-3417139 Msa0485680:CDS 35.0%
!! GCTAATGGTGATGTTTTTGA+TGG - chr3_4:3417201-3417220 Msa0485680:CDS 35.0%
!! GTGATGTTTTTGATGGTTGT+TGG - chr3_4:3417208-3417227 Msa0485680:CDS 35.0%
! TTTGATGGTTGTTGGTCAAA+TGG - chr3_4:3417216-3417235 Msa0485680:CDS 35.0%
!!! TGGTCAAATGGTTTTGTACA+TGG - chr3_4:3417228-3417247 Msa0485680:CDS 35.0%
! GAGTTTCTAGATTTGCAGAT+GGG - chr3_4:3417256-3417275 Msa0485680:CDS 35.0%
! AGTTTCTAGATTTGCAGATG+GGG - chr3_4:3417257-3417276 Msa0485680:CDS 35.0%
TACATTGGAAATTGGACTTG+TGG - chr3_4:3417285-3417304 Msa0485680:CDS 35.0%
!! ACTTGTGGTGATGTTTTTGA+TGG - chr3_4:3417300-3417319 Msa0485680:CDS 35.0%
AAAAATGAAAGGGATGGATC+AGG - chr3_4:3417402-3417421 Msa0485680:CDS 35.0%
AAAATGAAAGGGATGGATCA+GGG - chr3_4:3417403-3417422 Msa0485680:CDS 35.0%
TTCTATGGTTGTTGGTCAAA+TGG - chr3_4:3417453-3417472 Msa0485680:CDS 35.0%
! AATGGACTTCAACATGGATA+TGG - chr3_4:3417471-3417490 Msa0485680:CDS 35.0%
GAGTTTATAGATCCGCAAAT+GGG - chr3_4:3417493-3417512 Msa0485680:CDS 35.0%
AGTTTATAGATCCGCAAATG+GGG - chr3_4:3417494-3417513 Msa0485680:CDS 35.0%
AAAACAGGGAAAATGGATGT+TGG - chr3_4:3417537-3417556 Msa0485680:CDS 35.0%
AAACAGGGAAAATGGATGTT+GGG - chr3_4:3417538-3417557 Msa0485680:CDS 35.0%
! ATGTCAAATGGACTTAGACA+TGG - chr3_4:3417606-3417625 Msa0485680:CDS 35.0%
! AATGGACTTAGACATGGATT+TGG - chr3_4:3417612-3417631 Msa0485680:CDS 35.0%
ATGAAACAGGGATTATGAGT+TGG - chr3_4:3417694-3417713 Msa0485680:CDS 35.0%
TGAAACAGGGATTATGAGTT+GGG - chr3_4:3417695-3417714 Msa0485680:CDS 35.0%
! TTTGATGGTTGTTGGTCAAA+TGG - chr3_4:3417216-3417235 Msa0485680:CDS 35.0%
! TGGTCAAATGGACTTATACA+TGG - chr3_4:3417744-3417763 Msa0485680:CDS 35.0%
AGTAAACTTCTCCATGACAA+TGG - chr3_4:3417819-3417838 Msa0485680:CDS 35.0%
! GTGTGTATTTTCCATTGTCA+TGG + chr3_4:3417833-3417852 None:intergenic 35.0%
CTCAATTGGAACAATAAACG+AGG - chr3_4:3417854-3417873 Msa0485680:CDS 35.0%
AACAATAAACGAGGGTGATT+GGG - chr3_4:3417863-3417882 Msa0485680:CDS 35.0%
TATGCAAGGAGTTCTTATTG+TGG - chr3_4:3418022-3418041 Msa0485680:CDS 35.0%
AAAGAAGAGATCGTGCATAT+GGG - chr3_4:3418130-3418149 Msa0485680:CDS 35.0%
! ATCAAGAATGGACTTGCTCA+TGG - chr3_4:3416949-3416968 Msa0485680:CDS 40.0%
! ATGGCAAAGGAAAGTACACA+TGG - chr3_4:3416968-3416987 Msa0485680:CDS 40.0%
! TTCTTTGGGAATTTCCGTCA+TGG - chr3_4:3417090-3417109 Msa0485680:CDS 40.0%
GGCACCCAAACTTATAAGAA+TGG - chr3_4:3417117-3417136 Msa0485680:CDS 40.0%
AAGAATGGAGGTAGCTACAT+TGG - chr3_4:3417132-3417151 Msa0485680:CDS 40.0%
GAGGTAGCTACATTGGAAAT+TGG - chr3_4:3417139-3417158 Msa0485680:CDS 40.0%
! GGAGTTTCTAGATTTGCAGA+TGG - chr3_4:3417255-3417274 Msa0485680:CDS 40.0%
GGGATGTCTACATTGGAAAT+TGG - chr3_4:3417277-3417296 Msa0485680:CDS 40.0%
ATTGCGCTTAGACATGGATT+TGG - chr3_4:3417333-3417352 Msa0485680:CDS 40.0%
ATGGATCAGGGATTATGAGT+TGG - chr3_4:3417415-3417434 Msa0485680:CDS 40.0%
TGGATCAGGGATTATGAGTT+GGG - chr3_4:3417416-3417435 Msa0485680:CDS 40.0%
! GATACTGGTGATGTCTTCTA+TGG - chr3_4:3417438-3417457 Msa0485680:CDS 40.0%
GTGATGTCTTCTATGGTTGT+TGG - chr3_4:3417445-3417464 Msa0485680:CDS 40.0%
! TGGTCAAATGGACTTCAACA+TGG - chr3_4:3417465-3417484 Msa0485680:CDS 40.0%
GGAGTTTATAGATCCGCAAA+TGG - chr3_4:3417492-3417511 Msa0485680:CDS 40.0%
TCCACTGGAAATTGGAAAAC+AGG - chr3_4:3417522-3417541 Msa0485680:CDS 40.0%
CCACTGGAAATTGGAAAACA+GGG - chr3_4:3417523-3417542 Msa0485680:CDS 40.0%
!! CGGTTTTTCGATTGCACTAA+TGG - chr3_4:3417564-3417583 Msa0485680:CDS 40.0%
! GCAAATGGTGATGTCTACAT+CGG - chr3_4:3417648-3417667 Msa0485680:CDS 40.0%
! GTGATGTCTTTGATGGTTGT+TGG - chr3_4:3417724-3417743 Msa0485680:CDS 40.0%
GGAAAATACACACGCTCAAT+TGG - chr3_4:3417840-3417859 Msa0485680:CDS 40.0%
GAACAATAAACGAGGGTGAT+TGG - chr3_4:3417862-3417881 Msa0485680:CDS 40.0%
AGAGAAAGGCCTGAAGATAT+GGG - chr3_4:3417902-3417921 Msa0485680:CDS 40.0%
! GGAACCATCAGGATTTTGAA+GGG + chr3_4:3417928-3417947 None:intergenic 40.0%
! TGGAACCATCAGGATTTTGA+AGG + chr3_4:3417929-3417948 None:intergenic 40.0%
TGAGCCCTTTGGTTATCAAA+AGG - chr3_4:3417994-3418013 Msa0485680:CDS 40.0%
GAGCCCTTTGGTTATCAAAA+GGG - chr3_4:3417995-3418014 Msa0485680:CDS 40.0%
CAAAGAAGAGATCGTGCATA+TGG - chr3_4:3418129-3418148 Msa0485680:CDS 40.0%
! ATCAAGAATGGACTTGCTCA+TGG - chr3_4:3416949-3416968 Msa0485680:CDS 40.0%
! ATGGCAAAGGAAAGTACACA+TGG - chr3_4:3416968-3416987 Msa0485680:CDS 40.0%
! TTCTTTGGGAATTTCCGTCA+TGG - chr3_4:3417090-3417109 Msa0485680:CDS 40.0%
GGCACCCAAACTTATAAGAA+TGG - chr3_4:3417117-3417136 Msa0485680:CDS 40.0%
AAGAATGGAGGTAGCTACAT+TGG - chr3_4:3417132-3417151 Msa0485680:CDS 40.0%
GAGGTAGCTACATTGGAAAT+TGG - chr3_4:3417139-3417158 Msa0485680:CDS 40.0%
! GGAGTTTCTAGATTTGCAGA+TGG - chr3_4:3417255-3417274 Msa0485680:CDS 40.0%
GGGATGTCTACATTGGAAAT+TGG - chr3_4:3417277-3417296 Msa0485680:CDS 40.0%
ATTGCGCTTAGACATGGATT+TGG - chr3_4:3417333-3417352 Msa0485680:CDS 40.0%
ATGGATCAGGGATTATGAGT+TGG - chr3_4:3417415-3417434 Msa0485680:CDS 40.0%
TGGATCAGGGATTATGAGTT+GGG - chr3_4:3417416-3417435 Msa0485680:CDS 40.0%
! GATACTGGTGATGTCTTCTA+TGG - chr3_4:3417438-3417457 Msa0485680:CDS 40.0%
GTGATGTCTTCTATGGTTGT+TGG - chr3_4:3417445-3417464 Msa0485680:CDS 40.0%
! TGGTCAAATGGACTTCAACA+TGG - chr3_4:3417465-3417484 Msa0485680:CDS 40.0%
GGAGTTTATAGATCCGCAAA+TGG - chr3_4:3417492-3417511 Msa0485680:CDS 40.0%
TCCACTGGAAATTGGAAAAC+AGG - chr3_4:3417522-3417541 Msa0485680:CDS 40.0%
CCACTGGAAATTGGAAAACA+GGG - chr3_4:3417523-3417542 Msa0485680:CDS 40.0%
!! CGGTTTTTCGATTGCACTAA+TGG - chr3_4:3417564-3417583 Msa0485680:CDS 40.0%
! GCAAATGGTGATGTCTACAT+CGG - chr3_4:3417648-3417667 Msa0485680:CDS 40.0%
! GTGATGTCTTTGATGGTTGT+TGG - chr3_4:3417724-3417743 Msa0485680:CDS 40.0%
GGAAAATACACACGCTCAAT+TGG - chr3_4:3417840-3417859 Msa0485680:CDS 40.0%
GAACAATAAACGAGGGTGAT+TGG - chr3_4:3417862-3417881 Msa0485680:CDS 40.0%
AGAGAAAGGCCTGAAGATAT+GGG - chr3_4:3417902-3417921 Msa0485680:CDS 40.0%
! GGAACCATCAGGATTTTGAA+GGG + chr3_4:3417928-3417947 None:intergenic 40.0%
! TGGAACCATCAGGATTTTGA+AGG + chr3_4:3417929-3417948 None:intergenic 40.0%
TGAGCCCTTTGGTTATCAAA+AGG - chr3_4:3417994-3418013 Msa0485680:CDS 40.0%
GAGCCCTTTGGTTATCAAAA+GGG - chr3_4:3417995-3418014 Msa0485680:CDS 40.0%
CAAAGAAGAGATCGTGCATA+TGG - chr3_4:3418129-3418148 Msa0485680:CDS 40.0%
! AATGGACTTGCTCATGGCAA+AGG - chr3_4:3416955-3416974 Msa0485680:CDS 45.0%
!! TATGAGGGTGATTGGGTTGA+TGG - chr3_4:3417009-3417028 Msa0485680:CDS 45.0%
!! TGGGTTGATGGAGATAAGAC+AGG - chr3_4:3417021-3417040 Msa0485680:CDS 45.0%
!! GGGTTGATGGAGATAAGACA+GGG - chr3_4:3417022-3417041 Msa0485680:CDS 45.0%
GATGGAGATAAGACAGGGAA+AGG - chr3_4:3417027-3417046 Msa0485680:CDS 45.0%
CCATCAGGAGACAAGTATGA+GGG - chr3_4:3417063-3417082 Msa0485680:CDS 45.0%
TGGAAGAGGGATTGAGACTT+CGG - chr3_4:3417179-3417198 Msa0485680:CDS 45.0%
CGATCAATTGCGCTTAGACA+TGG - chr3_4:3417327-3417346 Msa0485680:CDS 45.0%
GCAAATGGGGCTGTCTATAT+CGG - chr3_4:3417369-3417388 Msa0485680:CDS 45.0%
GGGCTGTCTATATCGGAATT+TGG - chr3_4:3417376-3417395 Msa0485680:CDS 45.0%
! GGGATTATGAGTTGGGATAC+TGG - chr3_4:3417423-3417442 Msa0485680:CDS 45.0%
! CCCTGTTTTCCAATTTCCAG+TGG + chr3_4:3417526-3417545 None:intergenic 45.0%
GGAAAATGGATGTTGGGAGA+CGG - chr3_4:3417544-3417563 Msa0485680:CDS 45.0%
GCTAACGAGGATGTCGATAT+TGG - chr3_4:3417786-3417805 Msa0485680:CDS 45.0%
CAGAGAAAGGCCTGAAGATA+TGG - chr3_4:3417901-3417920 Msa0485680:CDS 45.0%
TTTGAAGGGCCCATATCTTC+AGG + chr3_4:3417914-3417933 None:intergenic 45.0%
TGCAATGAAGTGGAACCATC+AGG + chr3_4:3417939-3417958 None:intergenic 45.0%
! AAAGGTAAGTCTGAGGCATC+TGG - chr3_4:3417969-3417988 Msa0485680:CDS 45.0%
! AATGGACTTGCTCATGGCAA+AGG - chr3_4:3416955-3416974 Msa0485680:CDS 45.0%
!! TATGAGGGTGATTGGGTTGA+TGG - chr3_4:3417009-3417028 Msa0485680:CDS 45.0%
!! TGGGTTGATGGAGATAAGAC+AGG - chr3_4:3417021-3417040 Msa0485680:CDS 45.0%
!! GGGTTGATGGAGATAAGACA+GGG - chr3_4:3417022-3417041 Msa0485680:CDS 45.0%
GATGGAGATAAGACAGGGAA+AGG - chr3_4:3417027-3417046 Msa0485680:CDS 45.0%
CCATCAGGAGACAAGTATGA+GGG - chr3_4:3417063-3417082 Msa0485680:CDS 45.0%
TGGAAGAGGGATTGAGACTT+CGG - chr3_4:3417179-3417198 Msa0485680:CDS 45.0%
CGATCAATTGCGCTTAGACA+TGG - chr3_4:3417327-3417346 Msa0485680:CDS 45.0%
GCAAATGGGGCTGTCTATAT+CGG - chr3_4:3417369-3417388 Msa0485680:CDS 45.0%
GGGCTGTCTATATCGGAATT+TGG - chr3_4:3417376-3417395 Msa0485680:CDS 45.0%
! GGGATTATGAGTTGGGATAC+TGG - chr3_4:3417423-3417442 Msa0485680:CDS 45.0%
! CCCTGTTTTCCAATTTCCAG+TGG + chr3_4:3417526-3417545 None:intergenic 45.0%
GGAAAATGGATGTTGGGAGA+CGG - chr3_4:3417544-3417563 Msa0485680:CDS 45.0%
GCTAACGAGGATGTCGATAT+TGG - chr3_4:3417786-3417805 Msa0485680:CDS 45.0%
CAGAGAAAGGCCTGAAGATA+TGG - chr3_4:3417901-3417920 Msa0485680:CDS 45.0%
TTTGAAGGGCCCATATCTTC+AGG + chr3_4:3417914-3417933 None:intergenic 45.0%
TGCAATGAAGTGGAACCATC+AGG + chr3_4:3417939-3417958 None:intergenic 45.0%
! AAAGGTAAGTCTGAGGCATC+TGG - chr3_4:3417969-3417988 Msa0485680:CDS 45.0%
!! TCAGACGAGGGTGTCTACAT+TGG - chr3_4:3416922-3416941 Msa0485680:CDS 50.0%
GGACTGTTCATAGAGCCATC+AGG - chr3_4:3417048-3417067 Msa0485680:CDS 50.0%
GCCATCAGGAGACAAGTATG+AGG - chr3_4:3417062-3417081 Msa0485680:CDS 50.0%
CCCTCATACTTGTCTCCTGA+TGG + chr3_4:3417066-3417085 None:intergenic 50.0%
GGGAATTTCCGTCATGGCAA+TGG - chr3_4:3417096-3417115 Msa0485680:CDS 50.0%
!! TTTGGGTGCCATTGCCATGA+CGG + chr3_4:3417107-3417126 None:intergenic 50.0%
GGGATTGAGACTTCGGCTAA+TGG - chr3_4:3417186-3417205 Msa0485680:CDS 50.0%
GCAGATGGGGATGTCTACAT+TGG - chr3_4:3417270-3417289 Msa0485680:CDS 50.0%
AGTGGAGACATCCCCATTTG+CGG + chr3_4:3417508-3417527 None:intergenic 50.0%
GGGATGTCTCCACTGGAAAT+TGG - chr3_4:3417514-3417533 Msa0485680:CDS 50.0%
! GCTGCTGGTGATGTCTTTGA+TGG - chr3_4:3417717-3417736 Msa0485680:CDS 50.0%
TGGGCCCTTCAAAATCCTGA+TGG - chr3_4:3417921-3417940 Msa0485680:CDS 50.0%
!! TCAGACGAGGGTGTCTACAT+TGG - chr3_4:3416922-3416941 Msa0485680:CDS 50.0%
GGACTGTTCATAGAGCCATC+AGG - chr3_4:3417048-3417067 Msa0485680:CDS 50.0%
GCCATCAGGAGACAAGTATG+AGG - chr3_4:3417062-3417081 Msa0485680:CDS 50.0%
CCCTCATACTTGTCTCCTGA+TGG + chr3_4:3417066-3417085 None:intergenic 50.0%
GGGAATTTCCGTCATGGCAA+TGG - chr3_4:3417096-3417115 Msa0485680:CDS 50.0%
!! TTTGGGTGCCATTGCCATGA+CGG + chr3_4:3417107-3417126 None:intergenic 50.0%
GGGATTGAGACTTCGGCTAA+TGG - chr3_4:3417186-3417205 Msa0485680:CDS 50.0%
GCAGATGGGGATGTCTACAT+TGG - chr3_4:3417270-3417289 Msa0485680:CDS 50.0%
AGTGGAGACATCCCCATTTG+CGG + chr3_4:3417508-3417527 None:intergenic 50.0%
GGGATGTCTCCACTGGAAAT+TGG - chr3_4:3417514-3417533 Msa0485680:CDS 50.0%
! GCTGCTGGTGATGTCTTTGA+TGG - chr3_4:3417717-3417736 Msa0485680:CDS 50.0%
TGGGCCCTTCAAAATCCTGA+TGG - chr3_4:3417921-3417940 Msa0485680:CDS 50.0%
GCAAATGGGGATGTCTCCAC+TGG - chr3_4:3417507-3417526 Msa0485680:CDS 55.0%
! GGGATTATGAGTTGGGCTGC+TGG - chr3_4:3417702-3417721 Msa0485680:CDS 55.0%
GCAAATGGGGATGTCTCCAC+TGG - chr3_4:3417507-3417526 Msa0485680:CDS 55.0%
! GGGATTATGAGTTGGGCTGC+TGG - chr3_4:3417702-3417721 Msa0485680:CDS 55.0%
GGCATCTGGTCTGAGCCCTT+TGG - chr3_4:3417983-3418002 Msa0485680:CDS 60.0%
GGCATCTGGTCTGAGCCCTT+TGG - chr3_4:3417983-3418002 Msa0485680:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 3416913 3418184 3416913 ID=Msa0485680;Name=Msa0485680
chr3_4 mRNA 3416913 3418184 3416913 ID=Msa0485680-mRNA-1;Parent=Msa0485680;Name=Msa0485680-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|423
chr3_4 exon 3416913 3418184 3416913 ID=Msa0485680-mRNA-1:exon:1243;Parent=Msa0485680-mRNA-1
chr3_4 CDS 3416913 3418184 3416913 ID=Msa0485680-mRNA-1:cds;Parent=Msa0485680-mRNA-1
Gene Sequence

>Msa0485680

ATGTTGTATTCAGACGAGGGTGTCTACATTGGTAACATCAAGAATGGACTTGCTCATGGCAAAGGAAAGTACACATGGTTTGATGATGGATCAATATATGAGGGTGATTGGGTTGATGGAGATAAGACAGGGAAAGGACTGTTCATAGAGCCATCAGGAGACAAGTATGAGGGTGAATTCTTTGGGAATTTCCGTCATGGCAATGGCACCCAAACTTATAAGAATGGAGGTAGCTACATTGGAAATTGGAAAAATGATAAAAGAGATGGAAGAGGGATTGAGACTTCGGCTAATGGTGATGTTTTTGATGGTTGTTGGTCAAATGGTTTTGTACATGGATATGGAGTTTCTAGATTTGCAGATGGGGATGTCTACATTGGAAATTGGACTTGTGGTGATGTTTTTGATGGTTGTCGATCAATTGCGCTTAGACATGGATTTGGAGTTTATAGATATGCAAATGGGGCTGTCTATATCGGAATTTGGAAAAAAAATGAAAGGGATGGATCAGGGATTATGAGTTGGGATACTGGTGATGTCTTCTATGGTTGTTGGTCAAATGGACTTCAACATGGATATGGAGTTTATAGATCCGCAAATGGGGATGTCTCCACTGGAAATTGGAAAACAGGGAAAATGGATGTTGGGAGACGGTTTTTCGATTGCACTAATGGTGATGTTTTTTATCGTTGTATGTCAAATGGACTTAGACATGGATTTGGAGTTTATAGATTTGCAAATGGTGATGTCTACATCGGAAATTTGACAAAAGACAAAATGGATGAAACAGGGATTATGAGTTGGGCTGCTGGTGATGTCTTTGATGGTTGTTGGTCAAATGGACTTATACATGGATATGGAGTTTATAGATATGCTAACGAGGATGTCGATATTGGTAACTTCATGAGTAAACTTCTCCATGACAATGGAAAATACACACGCTCAATTGGAACAATAAACGAGGGTGATTGGGTTGTTAAAAAAGTGACAGAGAAAGGCCTGAAGATATGGGCCCTTCAAAATCCTGATGGTTCCACTTCATTGCAGATTTCAAATAAAGGTAAGTCTGAGGCATCTGGTCTGAGCCCTTTGGTTATCAAAAGGGAATATATGCAAGGAGTTCTTATTGTGGAGAAAATCAGACCATATTCAGAAGTAACACATAATAATAATAATAACAACAACAAAAAACAGGGTGCATTTAGTGCGAAGAAAGCAAAGAAGAGATCGTGCATATGGGCAATTTTGAAGACCATCAAAGCTATTATATGA
Protein sequence

>Msa0485680

MLYSDEGVYIGNIKNGLAHGKGKYTWFDDGSIYEGDWVDGDKTGKGLFIEPSGDKYEGEFFGNFRHGNGTQTYKNGGSYIGNWKNDKRDGRGIETSANGDVFDGCWSNGFVHGYGVSRFADGDVYIGNWTCGDVFDGCRSIALRHGFGVYRYANGAVYIGIWKKNERDGSGIMSWDTGDVFYGCWSNGLQHGYGVYRSANGDVSTGNWKTGKMDVGRRFFDCTNGDVFYRCMSNGLRHGFGVYRFANGDVYIGNLTKDKMDETGIMSWAAGDVFDGCWSNGLIHGYGVYRYANEDVDIGNFMSKLLHDNGKYTRSIGTINEGDWVVKKVTEKGLKIWALQNPDGSTSLQISNKGKSEASGLSPLVIKREYMQGVLIVEKIRPYSEVTHNNNNNNNKKQGAFSAKKAKKRSCIWAILKTIKAII*