AlfalfaGEDB | Msa0485680

M. sativa cultivar zhongmu-4 / Msa0485680

KEGG: K00889
GO: -
PFAM: PF02493.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0485680	RHN43201.1	87.559	426	49	2	1	423	7	431	0.0	711

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0485680	sp\|Q8RY89\|PI5K8_ARATH	30.488	410	194	8	2	403	9	335	1.77e-40	156

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0485680	A0A396GSR0	87.559	426	49	2	1	423	7	431	0.0	711

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008840	Msa0485680	0.806042	9.966431e-50	-8.615850e-47
Msa0017320	Msa0485680	0.813008	3.181389e-51	-8.615850e-47
Msa0020390	Msa0485680	0.816484	5.400602e-52	-8.615850e-47
Msa0029260	Msa0485680	0.804519	2.077674e-49	-8.615850e-47
Msa0032860	Msa0485680	0.806080	9.784148e-50	-8.615850e-47
Msa0033880	Msa0485680	0.816530	5.274525e-52	-8.615850e-47
Msa0036370	Msa0485680	0.811037	8.553095e-51	-8.615850e-47
Msa0038870	Msa0485680	0.805542	1.269609e-49	-8.615850e-47
Msa0047250	Msa0485680	0.817597	3.036149e-52	-8.615850e-47
Msa0055100	Msa0485680	0.808402	3.152337e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0485680	MtrunA17_Chr8g0385241	87.559	426	49	2	1	423	7	431	0.0	711
Msa0485680	MtrunA17_Chr8g0382971	58.074	353	127	5	71	423	22	353	6.50e-118	348
Msa0485680	MtrunA17_Chr8g0382971	50.859	291	104	4	1	278	22	286	7.37e-83	258
Msa0485680	MtrunA17_Chr8g0383551	55.460	348	95	10	124	423	32	367	7.68e-97	294
Msa0485680	MtrunA17_Chr8g0383551	41.200	250	108	8	2	225	26	262	1.37e-42	153
Msa0485680	MtrunA17_Chr4g0059911	48.089	314	137	6	92	386	2	308	8.76e-80	251
Msa0485680	MtrunA17_Chr4g0059911	50.352	284	103	5	8	277	13	272	9.59e-78	246
Msa0485680	MtrunA17_Chr4g0059911	37.981	208	94	4	1	184	76	272	8.63e-28	113
Msa0485680	MtrunA17_Chr8g0377671	50.752	266	120	2	71	336	17	271	5.44e-72	228
Msa0485680	MtrunA17_Chr8g0377671	54.393	239	94	3	3	228	19	255	3.16e-69	221

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0485680	AT1G60890.2	30.488	410	194	8	2	403	21	347	1.67e-41	157
Msa0485680	AT1G60890.1	30.488	410	194	8	2	403	9	335	1.80e-41	156
Msa0485680	AT1G10900.2	29.695	394	181	9	9	398	16	317	2.28e-34	136
Msa0485680	AT1G10900.2	37.647	170	95	2	3	172	33	191	4.56e-21	96.3
Msa0485680	AT1G10900.2	35.606	132	61	2	1	132	77	184	2.11e-14	75.9
Msa0485680	AT1G10900.1	29.695	394	181	9	9	398	16	317	2.28e-34	136
Msa0485680	AT1G10900.1	37.647	170	95	2	3	172	33	191	4.56e-21	96.3
Msa0485680	AT1G10900.1	35.606	132	61	2	1	132	77	184	2.11e-14	75.9
Msa0485680	AT1G10900.3	29.695	394	181	9	9	398	16	317	2.28e-34	136
Msa0485680	AT1G10900.3	37.647	170	95	2	3	172	33	191	4.56e-21	96.3

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Find 111 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGGAAAATGGATGT+TGG	0.499221	3_4:-3417538	Msa0485680:CDS
AAAATGAAAGGGATGGATCA+GGG	0.508482	3_4:-3417672	Msa0485680:CDS
AAACAGGGAAAATGGATGTT+GGG	0.487088	3_4:-3417537	Msa0485680:CDS
AAAGAAGAGATCGTGCATAT+GGG	0.548304	3_4:-3416945	Msa0485680:CDS
AAAGACAAAATGGATGAAAC+AGG	0.358390	3_4:-3417394	Msa0485680:CDS
AAAGATGTTGTATTCAGACG+AGG	0.623934	3_4:-3418166	None:intergenic
AAAGGTAAGTCTGAGGCATC+TGG	0.454416	3_4:-3417106	Msa0485680:CDS
AAATTGGAAAACAGGGAAAA+TGG	0.307307	3_4:-3417545	Msa0485680:CDS
AAATTTGACAAAAGACAAAA+TGG	0.343438	3_4:-3417404	Msa0485680:CDS
AACAATAAACGAGGGTGATT+GGG	0.398395	3_4:-3417212	Msa0485680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAATATATGAGGGTGATT+GGG	-	chr3_4:3417002-3417021	Msa0485680:CDS	30.0%
ACCTCCATTCTTATAAGTTT+GGG	+	chr3_4:3417124-3417143	None:intergenic	30.0%
TACCTCCATTCTTATAAGTT+TGG	+	chr3_4:3417125-3417144	None:intergenic	30.0%
AATGATAAAAGAGATGGAAG+AGG	-	chr3_4:3417165-3417184	Msa0485680:CDS	30.0%
ATGATAAAAGAGATGGAAGA+GGG	-	chr3_4:3417166-3417185	Msa0485680:CDS	30.0%
GGAGTTTATAGATATGCAAA+TGG	-	chr3_4:3417354-3417373	Msa0485680:CDS	30.0%
TGGAAAAAAAATGAAAGGGA+TGG	-	chr3_4:3417396-3417415	Msa0485680:CDS	30.0%
AAATTGGAAAACAGGGAAAA+TGG	-	chr3_4:3417530-3417549	Msa0485680:CDS	30.0%
GGAGTTTATAGATTTGCAAA+TGG	-	chr3_4:3417633-3417652	Msa0485680:CDS	30.0%
AAAGACAAAATGGATGAAAC+AGG	-	chr3_4:3417681-3417700	Msa0485680:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	3416913	3418184	3416913	ID=Msa0485680;Name=Msa0485680
chr3_4	mRNA	3416913	3418184	3416913	ID=Msa0485680-mRNA-1;Parent=Msa0485680;Name=Msa0485680-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|423
chr3_4	exon	3416913	3418184	3416913	ID=Msa0485680-mRNA-1:exon:1243;Parent=Msa0485680-mRNA-1
chr3_4	CDS	3416913	3418184	3416913	ID=Msa0485680-mRNA-1:cds;Parent=Msa0485680-mRNA-1

Gene Sequence

>Msa0485680

ATGTTGTATTCAGACGAGGGTGTCTACATTGGTAACATCAAGAATGGACTTGCTCATGGCAAAGGAAAGTACACATGGTTTGATGATGGATCAATATATGAGGGTGATTGGGTTGATGGAGATAAGACAGGGAAAGGACTGTTCATAGAGCCATCAGGAGACAAGTATGAGGGTGAATTCTTTGGGAATTTCCGTCATGGCAATGGCACCCAAACTTATAAGAATGGAGGTAGCTACATTGGAAATTGGAAAAATGATAAAAGAGATGGAAGAGGGATTGAGACTTCGGCTAATGGTGATGTTTTTGATGGTTGTTGGTCAAATGGTTTTGTACATGGATATGGAGTTTCTAGATTTGCAGATGGGGATGTCTACATTGGAAATTGGACTTGTGGTGATGTTTTTGATGGTTGTCGATCAATTGCGCTTAGACATGGATTTGGAGTTTATAGATATGCAAATGGGGCTGTCTATATCGGAATTTGGAAAAAAAATGAAAGGGATGGATCAGGGATTATGAGTTGGGATACTGGTGATGTCTTCTATGGTTGTTGGTCAAATGGACTTCAACATGGATATGGAGTTTATAGATCCGCAAATGGGGATGTCTCCACTGGAAATTGGAAAACAGGGAAAATGGATGTTGGGAGACGGTTTTTCGATTGCACTAATGGTGATGTTTTTTATCGTTGTATGTCAAATGGACTTAGACATGGATTTGGAGTTTATAGATTTGCAAATGGTGATGTCTACATCGGAAATTTGACAAAAGACAAAATGGATGAAACAGGGATTATGAGTTGGGCTGCTGGTGATGTCTTTGATGGTTGTTGGTCAAATGGACTTATACATGGATATGGAGTTTATAGATATGCTAACGAGGATGTCGATATTGGTAACTTCATGAGTAAACTTCTCCATGACAATGGAAAATACACACGCTCAATTGGAACAATAAACGAGGGTGATTGGGTTGTTAAAAAAGTGACAGAGAAAGGCCTGAAGATATGGGCCCTTCAAAATCCTGATGGTTCCACTTCATTGCAGATTTCAAATAAAGGTAAGTCTGAGGCATCTGGTCTGAGCCCTTTGGTTATCAAAAGGGAATATATGCAAGGAGTTCTTATTGTGGAGAAAATCAGACCATATTCAGAAGTAACACATAATAATAATAATAACAACAACAAAAAACAGGGTGCATTTAGTGCGAAGAAAGCAAAGAAGAGATCGTGCATATGGGCAATTTTGAAGACCATCAAAGCTATTATATGA

Protein sequence

>Msa0485680

MLYSDEGVYIGNIKNGLAHGKGKYTWFDDGSIYEGDWVDGDKTGKGLFIEPSGDKYEGEFFGNFRHGNGTQTYKNGGSYIGNWKNDKRDGRGIETSANGDVFDGCWSNGFVHGYGVSRFADGDVYIGNWTCGDVFDGCRSIALRHGFGVYRYANGAVYIGIWKKNERDGSGIMSWDTGDVFYGCWSNGLQHGYGVYRSANGDVSTGNWKTGKMDVGRRFFDCTNGDVFYRCMSNGLRHGFGVYRFANGDVYIGNLTKDKMDETGIMSWAAGDVFDGCWSNGLIHGYGVYRYANEDVDIGNFMSKLLHDNGKYTRSIGTINEGDWVVKKVTEKGLKIWALQNPDGSTSLQISNKGKSEASGLSPLVIKREYMQGVLIVEKIRPYSEVTHNNNNNNNKKQGAFSAKKAKKRSCIWAILKTIKAII*