Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0406140 | XP_013469988.2 | 89.711 | 311 | 25 | 2 | 2 | 305 | 13 | 323 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0406140 | sp|O82368|Y2988_ARATH | 33.441 | 311 | 170 | 8 | 3 | 305 | 14 | 295 | 6.11e-48 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0406140 | A0A396JV61 | 89.711 | 311 | 25 | 2 | 2 | 305 | 13 | 323 | 0.0 | 576 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0406140 | Msa0787600 | 0.805257 | 1.456559e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0406140 | MtrunA17_Chr1g0207381 | 89.711 | 311 | 25 | 2 | 2 | 305 | 13 | 323 | 0.0 | 576 |
| Msa0406140 | MtrunA17_Chr4g0051721 | 88.398 | 181 | 21 | 0 | 2 | 182 | 13 | 193 | 1.07e-119 | 342 |
| Msa0406140 | MtrunA17_Chr3g0093841 | 24.534 | 322 | 201 | 11 | 4 | 308 | 511 | 807 | 1.23e-11 | 65.5 |
| Msa0406140 | MtrunA17_Chr3g0093841 | 28.662 | 157 | 109 | 2 | 2 | 158 | 18 | 171 | 3.16e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0406140 | AT2G29880.1 | 33.441 | 311 | 170 | 8 | 3 | 305 | 14 | 295 | 6.21e-49 | 166 |
| Msa0406140 | AT5G27260.1 | 34.091 | 308 | 171 | 7 | 3 | 305 | 9 | 289 | 2.59e-47 | 161 |
| Msa0406140 | AT1G30140.2 | 32.889 | 225 | 137 | 5 | 2 | 222 | 8 | 222 | 2.42e-30 | 114 |
| Msa0406140 | AT1G30140.1 | 32.889 | 225 | 137 | 5 | 2 | 222 | 8 | 222 | 2.42e-30 | 114 |
Find 53 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGCTGAAGAATAATATT+TGG | 0.182385 | 3_2:+42219122 | Msa0406140:CDS |
| ATGCGTAACAACTCTGGTTT+TGG | 0.286642 | 3_2:+42218481 | Msa0406140:CDS |
| TGTTATGAATGCATCATTAT+TGG | 0.292284 | 3_2:-42218840 | None:intergenic |
| TATGGTGGTTCATAATTATC+TGG | 0.347936 | 3_2:-42218863 | None:intergenic |
| GAGCAAGAAAGTGAAAGTTT+TGG | 0.364343 | 3_2:+42218794 | Msa0406140:CDS |
| AGTATGGAGTAATTACTTAA+AGG | 0.368835 | 3_2:+42218543 | Msa0406140:CDS |
| TCCGAGTACGAAAGGAGTTC+TGG | 0.386489 | 3_2:+42218983 | Msa0406140:CDS |
| TGAGTTGTTGTTCCTCTTGG+TGG | 0.396694 | 3_2:+42218288 | Msa0406140:CDS |
| AGAGCTGAAGAATAATATTT+GGG | 0.396765 | 3_2:+42219123 | Msa0406140:CDS |
| GTTATGAATGCATCATTATT+GGG | 0.403613 | 3_2:-42218839 | None:intergenic |
| GAGTTCTAAACCACTTCATT+CGG | 0.405087 | 3_2:-42218435 | None:intergenic |
| TTAGGTGATGGAGGTTGGTA+TGG | 0.410967 | 3_2:-42218881 | None:intergenic |
| TGTCTAACATGATGGAGAAA+AGG | 0.423057 | 3_2:+42219089 | Msa0406140:CDS |
| GGTGATGGAGGTTGGTATGG+TGG | 0.433857 | 3_2:-42218878 | None:intergenic |
| AAAACCTTTCTTCTAGCATT+GGG | 0.433936 | 3_2:+42219041 | Msa0406140:CDS |
| GATTATTTGAAGATTCTTGT+TGG | 0.439501 | 3_2:+42218704 | Msa0406140:CDS |
| GAAAACCTTTCTTCTAGCAT+TGG | 0.440421 | 3_2:+42219040 | Msa0406140:CDS |
| TTGAAGATTCTTGTTGGAGG+TGG | 0.445118 | 3_2:+42218710 | Msa0406140:CDS |
| GTTGGTTAGGTGATGGAGGT+TGG | 0.445510 | 3_2:-42218886 | None:intergenic |
| ACACGGCTACTGAAGAAGTA+TGG | 0.447236 | 3_2:+42218527 | Msa0406140:CDS |
| TAATGAGTTGTTGTTCCTCT+TGG | 0.447268 | 3_2:+42218285 | Msa0406140:CDS |
| GTCTAACATGATGGAGAAAA+GGG | 0.452368 | 3_2:+42219090 | Msa0406140:CDS |
| AAAGGAGTTCTGGTGTTGTT+GGG | 0.456514 | 3_2:+42218993 | Msa0406140:CDS |
| GAAAGGAGTTCTGGTGTTGT+TGG | 0.477113 | 3_2:+42218992 | Msa0406140:CDS |
| AATGAAGTCAAAAGCAGATA+AGG | 0.479350 | 3_2:+42219204 | Msa0406140:CDS |
| GATGGTGGAGTAGGTTGGTT+AGG | 0.483841 | 3_2:-42218899 | None:intergenic |
| ACCAGAACTCCTTTCGTACT+CGG | 0.488981 | 3_2:-42218984 | None:intergenic |
| ACGTTTATGCGTAACAACTC+TGG | 0.489769 | 3_2:+42218475 | Msa0406140:CDS |
| CATGATGGAGAAAAGGGAAA+AGG | 0.499421 | 3_2:+42219096 | Msa0406140:CDS |
| CAACAATCAAGGACCTGCTA+TGG | 0.500995 | 3_2:+42219018 | Msa0406140:CDS |
| ACAAAGATGGCTATGTAGCT+TGG | 0.511243 | 3_2:+42218248 | Msa0406140:CDS |
| GTAGGTTGGTTAGGTGATGG+AGG | 0.512588 | 3_2:-42218890 | None:intergenic |
| TTGTTTACTAAGTGAACCAT+TGG | 0.514833 | 3_2:-42218338 | None:intergenic |
| CAACTCATTAGTTTCTTCCA+TGG | 0.518120 | 3_2:-42218272 | None:intergenic |
| GAAATAGATCCGAGTACGAA+AGG | 0.521953 | 3_2:+42218975 | Msa0406140:CDS |
| AATGGGATGGTGGAGTAGGT+TGG | 0.522124 | 3_2:-42218904 | None:intergenic |
| GGAGTAGGTTGGTTAGGTGA+TGG | 0.533493 | 3_2:-42218893 | None:intergenic |
| TAGTCCCAATGCTAGAAGAA+AGG | 0.534948 | 3_2:-42219045 | None:intergenic |
| TTGGTGGATGCTATAAATAG+AGG | 0.536963 | 3_2:+42218304 | Msa0406140:CDS |
| TGAAAAGATGTCTAACATGA+TGG | 0.541827 | 3_2:+42219081 | Msa0406140:CDS |
| AAATAATAGAGGGATGGGTA+AGG | 0.543328 | 3_2:+42218225 | None:intergenic |
| TTGGAGGTGGAGTGTCTAGC+GGG | 0.545573 | 3_2:+42218723 | Msa0406140:CDS |
| ATTACTTGAGCCGAATGAAG+TGG | 0.570458 | 3_2:+42218425 | Msa0406140:CDS |
| TGGCTATGTAGCTTGGACCA+TGG | 0.580657 | 3_2:+42218255 | Msa0406140:CDS |
| GTTGTTGGGATCAACAATCA+AGG | 0.582452 | 3_2:+42219007 | Msa0406140:CDS |
| TATTTGAAGATTCTTGTTGG+AGG | 0.595361 | 3_2:+42218707 | Msa0406140:CDS |
| TGGTGGATGCTATAAATAGA+GGG | 0.599601 | 3_2:+42218305 | Msa0406140:CDS |
| TTCTATAGCATTAGACGCTG+AGG | 0.600384 | 3_2:+42218751 | Msa0406140:CDS |
| GTTGGAGGTGGAGTGTCTAG+CGG | 0.610018 | 3_2:+42218722 | Msa0406140:CDS |
| TTCAGTTGCAAAGACTTACA+CGG | 0.635359 | 3_2:+42218510 | Msa0406140:CDS |
| AGAGGGTTACGTGATGCCAA+TGG | 0.638045 | 3_2:+42218322 | Msa0406140:CDS |
| TATTTATAGCATCCACCAAG+AGG | 0.660190 | 3_2:-42218300 | None:intergenic |
| GGGATGGGTAAGGACAAAGA+TGG | 0.668592 | 3_2:+42218235 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTGTAATTCAGTTT+TGG | - | chr3_2:42218398-42218417 | None:intergenic | 20.0% |
| !!! | AGTTTTTTGTAATTCAGTTT+TGG | - | chr3_2:42218398-42218417 | None:intergenic | 20.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | + | chr3_2:42218543-42218562 | Msa0406140:CDS | 25.0% |
| !!! | AATATTTTTGTGAGATGGAT+GGG | - | chr3_2:42218660-42218679 | None:intergenic | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | + | chr3_2:42218704-42218723 | Msa0406140:CDS | 25.0% |
| ! | GTTATGAATGCATCATTATT+GGG | - | chr3_2:42218842-42218861 | None:intergenic | 25.0% |
| ! | TGTTATGAATGCATCATTAT+TGG | - | chr3_2:42218843-42218862 | None:intergenic | 25.0% |
| ! | CTCTGAATCTAAAGAAAAAT+GGG | - | chr3_2:42218924-42218943 | None:intergenic | 25.0% |
| ! | AGAGCTGAAGAATAATATTT+GGG | + | chr3_2:42219123-42219142 | Msa0406140:CDS | 25.0% |
| !! | TTCTTTTAATCTTCAAGAAG+AGG | - | chr3_2:42219231-42219250 | None:intergenic | 25.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | + | chr3_2:42218543-42218562 | Msa0406140:CDS | 25.0% |
| !!! | AATATTTTTGTGAGATGGAT+GGG | - | chr3_2:42218660-42218679 | None:intergenic | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | + | chr3_2:42218704-42218723 | Msa0406140:CDS | 25.0% |
| ! | GTTATGAATGCATCATTATT+GGG | - | chr3_2:42218842-42218861 | None:intergenic | 25.0% |
| ! | TGTTATGAATGCATCATTAT+TGG | - | chr3_2:42218843-42218862 | None:intergenic | 25.0% |
| ! | CTCTGAATCTAAAGAAAAAT+GGG | - | chr3_2:42218924-42218943 | None:intergenic | 25.0% |
| ! | AGAGCTGAAGAATAATATTT+GGG | + | chr3_2:42219123-42219142 | Msa0406140:CDS | 25.0% |
| !! | TTCTTTTAATCTTCAAGAAG+AGG | - | chr3_2:42219231-42219250 | None:intergenic | 25.0% |
| TTGTTTACTAAGTGAACCAT+TGG | - | chr3_2:42218341-42218360 | None:intergenic | 30.0% | |
| !! | GAATATTTTTGTGAGATGGA+TGG | - | chr3_2:42218661-42218680 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | + | chr3_2:42218707-42218726 | Msa0406140:CDS | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | + | chr3_2:42218799-42218818 | Msa0406140:CDS | 30.0% |
| TATGGTGGTTCATAATTATC+TGG | - | chr3_2:42218866-42218885 | None:intergenic | 30.0% | |
| GAATCTAAAGAAAAATGGGA+TGG | - | chr3_2:42218920-42218939 | None:intergenic | 30.0% | |
| CCTCTGAATCTAAAGAAAAA+TGG | - | chr3_2:42218925-42218944 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTAGATTCAG+AGG | + | chr3_2:42218922-42218941 | Msa0406140:CDS | 30.0% |
| !! | TGACGATTTCGTTTTTCAAT+AGG | - | chr3_2:42218950-42218969 | None:intergenic | 30.0% |
| AAAACCTTTCTTCTAGCATT+GGG | + | chr3_2:42219041-42219060 | Msa0406140:CDS | 30.0% | |
| TGAAAAGATGTCTAACATGA+TGG | + | chr3_2:42219081-42219100 | Msa0406140:CDS | 30.0% | |
| GAGAGCTGAAGAATAATATT+TGG | + | chr3_2:42219122-42219141 | Msa0406140:CDS | 30.0% | |
| !! | CGAGTTTTGTCATCTAAATT+TGG | - | chr3_2:42219166-42219185 | None:intergenic | 30.0% |
| AATGAAGTCAAAAGCAGATA+AGG | + | chr3_2:42219204-42219223 | Msa0406140:CDS | 30.0% | |
| TTGTTTACTAAGTGAACCAT+TGG | - | chr3_2:42218341-42218360 | None:intergenic | 30.0% | |
| !! | GAATATTTTTGTGAGATGGA+TGG | - | chr3_2:42218661-42218680 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | + | chr3_2:42218707-42218726 | Msa0406140:CDS | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | + | chr3_2:42218799-42218818 | Msa0406140:CDS | 30.0% |
| TATGGTGGTTCATAATTATC+TGG | - | chr3_2:42218866-42218885 | None:intergenic | 30.0% | |
| GAATCTAAAGAAAAATGGGA+TGG | - | chr3_2:42218920-42218939 | None:intergenic | 30.0% | |
| CCTCTGAATCTAAAGAAAAA+TGG | - | chr3_2:42218925-42218944 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTAGATTCAG+AGG | + | chr3_2:42218922-42218941 | Msa0406140:CDS | 30.0% |
| !! | TGACGATTTCGTTTTTCAAT+AGG | - | chr3_2:42218950-42218969 | None:intergenic | 30.0% |
| AAAACCTTTCTTCTAGCATT+GGG | + | chr3_2:42219041-42219060 | Msa0406140:CDS | 30.0% | |
| TGAAAAGATGTCTAACATGA+TGG | + | chr3_2:42219081-42219100 | Msa0406140:CDS | 30.0% | |
| GAGAGCTGAAGAATAATATT+TGG | + | chr3_2:42219122-42219141 | Msa0406140:CDS | 30.0% | |
| !! | CGAGTTTTGTCATCTAAATT+TGG | - | chr3_2:42219166-42219185 | None:intergenic | 30.0% |
| AATGAAGTCAAAAGCAGATA+AGG | + | chr3_2:42219204-42219223 | Msa0406140:CDS | 30.0% | |
| ! | CAACTCATTAGTTTCTTCCA+TGG | - | chr3_2:42218275-42218294 | None:intergenic | 35.0% |
| ! | TAATGAGTTGTTGTTCCTCT+TGG | + | chr3_2:42218285-42218304 | Msa0406140:CDS | 35.0% |
| TATTTATAGCATCCACCAAG+AGG | - | chr3_2:42218303-42218322 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGCTATAAATAG+AGG | + | chr3_2:42218304-42218323 | Msa0406140:CDS | 35.0% |
| ! | TGGTGGATGCTATAAATAGA+GGG | + | chr3_2:42218305-42218324 | Msa0406140:CDS | 35.0% |
| !! | GAGTTCTAAACCACTTCATT+CGG | - | chr3_2:42218438-42218457 | None:intergenic | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | + | chr3_2:42218486-42218505 | Msa0406140:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | + | chr3_2:42218510-42218529 | Msa0406140:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | - | chr3_2:42218665-42218684 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | + | chr3_2:42218662-42218681 | Msa0406140:CDS | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | + | chr3_2:42218794-42218813 | Msa0406140:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | + | chr3_2:42218803-42218822 | Msa0406140:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | + | chr3_2:42218804-42218823 | Msa0406140:CDS | 35.0% |
| TCTAAAGAAAAATGGGATGG+TGG | - | chr3_2:42218917-42218936 | None:intergenic | 35.0% | |
| GAAAACCTTTCTTCTAGCAT+TGG | + | chr3_2:42219040-42219059 | Msa0406140:CDS | 35.0% | |
| ! | TGTCTAACATGATGGAGAAA+AGG | + | chr3_2:42219089-42219108 | Msa0406140:CDS | 35.0% |
| ! | GTCTAACATGATGGAGAAAA+GGG | + | chr3_2:42219090-42219109 | Msa0406140:CDS | 35.0% |
| ! | CAACTCATTAGTTTCTTCCA+TGG | - | chr3_2:42218275-42218294 | None:intergenic | 35.0% |
| ! | TAATGAGTTGTTGTTCCTCT+TGG | + | chr3_2:42218285-42218304 | Msa0406140:CDS | 35.0% |
| TATTTATAGCATCCACCAAG+AGG | - | chr3_2:42218303-42218322 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGCTATAAATAG+AGG | + | chr3_2:42218304-42218323 | Msa0406140:CDS | 35.0% |
| ! | TGGTGGATGCTATAAATAGA+GGG | + | chr3_2:42218305-42218324 | Msa0406140:CDS | 35.0% |
| !! | GAGTTCTAAACCACTTCATT+CGG | - | chr3_2:42218438-42218457 | None:intergenic | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | + | chr3_2:42218486-42218505 | Msa0406140:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | + | chr3_2:42218510-42218529 | Msa0406140:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | - | chr3_2:42218665-42218684 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | + | chr3_2:42218662-42218681 | Msa0406140:CDS | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | + | chr3_2:42218794-42218813 | Msa0406140:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | + | chr3_2:42218803-42218822 | Msa0406140:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | + | chr3_2:42218804-42218823 | Msa0406140:CDS | 35.0% |
| TCTAAAGAAAAATGGGATGG+TGG | - | chr3_2:42218917-42218936 | None:intergenic | 35.0% | |
| GAAAACCTTTCTTCTAGCAT+TGG | + | chr3_2:42219040-42219059 | Msa0406140:CDS | 35.0% | |
| ! | TGTCTAACATGATGGAGAAA+AGG | + | chr3_2:42219089-42219108 | Msa0406140:CDS | 35.0% |
| ! | GTCTAACATGATGGAGAAAA+GGG | + | chr3_2:42219090-42219109 | Msa0406140:CDS | 35.0% |
| ACAAAGATGGCTATGTAGCT+TGG | + | chr3_2:42218248-42218267 | Msa0406140:CDS | 40.0% | |
| !!! | TTTTGGAATTGAGCTGAGGA+AGG | - | chr3_2:42218381-42218400 | None:intergenic | 40.0% |
| !!! | TCAGTTTTGGAATTGAGCTG+AGG | - | chr3_2:42218385-42218404 | None:intergenic | 40.0% |
| ATTACTTGAGCCGAATGAAG+TGG | + | chr3_2:42218425-42218444 | Msa0406140:CDS | 40.0% | |
| ACGTTTATGCGTAACAACTC+TGG | + | chr3_2:42218475-42218494 | Msa0406140:CDS | 40.0% | |
| !! | ATGCGTAACAACTCTGGTTT+TGG | + | chr3_2:42218481-42218500 | Msa0406140:CDS | 40.0% |
| !!! | GTAACAACTCTGGTTTTGGA+TGG | + | chr3_2:42218485-42218504 | Msa0406140:CDS | 40.0% |
| TTGAAGATTCTTGTTGGAGG+TGG | + | chr3_2:42218710-42218729 | Msa0406140:CDS | 40.0% | |
| TTCTATAGCATTAGACGCTG+AGG | + | chr3_2:42218751-42218770 | Msa0406140:CDS | 40.0% | |
| GAAATAGATCCGAGTACGAA+AGG | + | chr3_2:42218975-42218994 | Msa0406140:CDS | 40.0% | |
| !! | AAAGGAGTTCTGGTGTTGTT+GGG | + | chr3_2:42218993-42219012 | Msa0406140:CDS | 40.0% |
| GTTGTTGGGATCAACAATCA+AGG | + | chr3_2:42219007-42219026 | Msa0406140:CDS | 40.0% | |
| ! | GAAGAAAGGTTTTCCATAGC+AGG | - | chr3_2:42219034-42219053 | None:intergenic | 40.0% |
| TAGTCCCAATGCTAGAAGAA+AGG | - | chr3_2:42219048-42219067 | None:intergenic | 40.0% | |
| ! | CATGATGGAGAAAAGGGAAA+AGG | + | chr3_2:42219096-42219115 | Msa0406140:CDS | 40.0% |
| ACAAAGATGGCTATGTAGCT+TGG | + | chr3_2:42218248-42218267 | Msa0406140:CDS | 40.0% | |
| !!! | TTTTGGAATTGAGCTGAGGA+AGG | - | chr3_2:42218381-42218400 | None:intergenic | 40.0% |
| !!! | TCAGTTTTGGAATTGAGCTG+AGG | - | chr3_2:42218385-42218404 | None:intergenic | 40.0% |
| ATTACTTGAGCCGAATGAAG+TGG | + | chr3_2:42218425-42218444 | Msa0406140:CDS | 40.0% | |
| ACGTTTATGCGTAACAACTC+TGG | + | chr3_2:42218475-42218494 | Msa0406140:CDS | 40.0% | |
| !! | ATGCGTAACAACTCTGGTTT+TGG | + | chr3_2:42218481-42218500 | Msa0406140:CDS | 40.0% |
| !!! | GTAACAACTCTGGTTTTGGA+TGG | + | chr3_2:42218485-42218504 | Msa0406140:CDS | 40.0% |
| TTGAAGATTCTTGTTGGAGG+TGG | + | chr3_2:42218710-42218729 | Msa0406140:CDS | 40.0% | |
| TTCTATAGCATTAGACGCTG+AGG | + | chr3_2:42218751-42218770 | Msa0406140:CDS | 40.0% | |
| GAAATAGATCCGAGTACGAA+AGG | + | chr3_2:42218975-42218994 | Msa0406140:CDS | 40.0% | |
| !! | AAAGGAGTTCTGGTGTTGTT+GGG | + | chr3_2:42218993-42219012 | Msa0406140:CDS | 40.0% |
| GTTGTTGGGATCAACAATCA+AGG | + | chr3_2:42219007-42219026 | Msa0406140:CDS | 40.0% | |
| ! | GAAGAAAGGTTTTCCATAGC+AGG | - | chr3_2:42219034-42219053 | None:intergenic | 40.0% |
| TAGTCCCAATGCTAGAAGAA+AGG | - | chr3_2:42219048-42219067 | None:intergenic | 40.0% | |
| ! | CATGATGGAGAAAAGGGAAA+AGG | + | chr3_2:42219096-42219115 | Msa0406140:CDS | 40.0% |
| ! | TGAGTTGTTGTTCCTCTTGG+TGG | + | chr3_2:42218288-42218307 | Msa0406140:CDS | 45.0% |
| ACACGGCTACTGAAGAAGTA+TGG | + | chr3_2:42218527-42218546 | Msa0406140:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+TGG | - | chr3_2:42218884-42218903 | None:intergenic | 45.0% |
| !! | GAAAAATGGGATGGTGGAGT+AGG | - | chr3_2:42218911-42218930 | None:intergenic | 45.0% |
| ACCAGAACTCCTTTCGTACT+CGG | - | chr3_2:42218987-42219006 | None:intergenic | 45.0% | |
| !! | GAAAGGAGTTCTGGTGTTGT+TGG | + | chr3_2:42218992-42219011 | Msa0406140:CDS | 45.0% |
| CAACAATCAAGGACCTGCTA+TGG | + | chr3_2:42219018-42219037 | Msa0406140:CDS | 45.0% | |
| ! | TGAGTTGTTGTTCCTCTTGG+TGG | + | chr3_2:42218288-42218307 | Msa0406140:CDS | 45.0% |
| ACACGGCTACTGAAGAAGTA+TGG | + | chr3_2:42218527-42218546 | Msa0406140:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+TGG | - | chr3_2:42218884-42218903 | None:intergenic | 45.0% |
| !! | GAAAAATGGGATGGTGGAGT+AGG | - | chr3_2:42218911-42218930 | None:intergenic | 45.0% |
| ACCAGAACTCCTTTCGTACT+CGG | - | chr3_2:42218987-42219006 | None:intergenic | 45.0% | |
| !! | GAAAGGAGTTCTGGTGTTGT+TGG | + | chr3_2:42218992-42219011 | Msa0406140:CDS | 45.0% |
| CAACAATCAAGGACCTGCTA+TGG | + | chr3_2:42219018-42219037 | Msa0406140:CDS | 45.0% | |
| TGGCTATGTAGCTTGGACCA+TGG | + | chr3_2:42218255-42218274 | Msa0406140:CDS | 50.0% | |
| AGAGGGTTACGTGATGCCAA+TGG | + | chr3_2:42218322-42218341 | Msa0406140:CDS | 50.0% | |
| !! | GTTGGTTAGGTGATGGAGGT+TGG | - | chr3_2:42218889-42218908 | None:intergenic | 50.0% |
| !! | GTAGGTTGGTTAGGTGATGG+AGG | - | chr3_2:42218893-42218912 | None:intergenic | 50.0% |
| !! | GGAGTAGGTTGGTTAGGTGA+TGG | - | chr3_2:42218896-42218915 | None:intergenic | 50.0% |
| !! | GATGGTGGAGTAGGTTGGTT+AGG | - | chr3_2:42218902-42218921 | None:intergenic | 50.0% |
| !! | AATGGGATGGTGGAGTAGGT+TGG | - | chr3_2:42218907-42218926 | None:intergenic | 50.0% |
| TCCGAGTACGAAAGGAGTTC+TGG | + | chr3_2:42218983-42219002 | Msa0406140:CDS | 50.0% | |
| TGGCTATGTAGCTTGGACCA+TGG | + | chr3_2:42218255-42218274 | Msa0406140:CDS | 50.0% | |
| AGAGGGTTACGTGATGCCAA+TGG | + | chr3_2:42218322-42218341 | Msa0406140:CDS | 50.0% | |
| !! | GTTGGTTAGGTGATGGAGGT+TGG | - | chr3_2:42218889-42218908 | None:intergenic | 50.0% |
| !! | GTAGGTTGGTTAGGTGATGG+AGG | - | chr3_2:42218893-42218912 | None:intergenic | 50.0% |
| !! | GGAGTAGGTTGGTTAGGTGA+TGG | - | chr3_2:42218896-42218915 | None:intergenic | 50.0% |
| !! | GATGGTGGAGTAGGTTGGTT+AGG | - | chr3_2:42218902-42218921 | None:intergenic | 50.0% |
| !! | AATGGGATGGTGGAGTAGGT+TGG | - | chr3_2:42218907-42218926 | None:intergenic | 50.0% |
| TCCGAGTACGAAAGGAGTTC+TGG | + | chr3_2:42218983-42219002 | Msa0406140:CDS | 50.0% | |
| ! | GTTGGAGGTGGAGTGTCTAG+CGG | + | chr3_2:42218722-42218741 | Msa0406140:CDS | 55.0% |
| ! | TTGGAGGTGGAGTGTCTAGC+GGG | + | chr3_2:42218723-42218742 | Msa0406140:CDS | 55.0% |
| !! | GGTGATGGAGGTTGGTATGG+TGG | - | chr3_2:42218881-42218900 | None:intergenic | 55.0% |
| ! | GTTGGAGGTGGAGTGTCTAG+CGG | + | chr3_2:42218722-42218741 | Msa0406140:CDS | 55.0% |
| ! | TTGGAGGTGGAGTGTCTAGC+GGG | + | chr3_2:42218723-42218742 | Msa0406140:CDS | 55.0% |
| !! | GGTGATGGAGGTTGGTATGG+TGG | - | chr3_2:42218881-42218900 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 42218238 | 42219270 | 42218238 | ID=Msa0406140;Name=Msa0406140 |
| chr3_2 | mRNA | 42218238 | 42219270 | 42218238 | ID=Msa0406140-mRNA-1;Parent=Msa0406140;Name=Msa0406140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|313 |
| chr3_2 | exon | 42218238 | 42218564 | 42218238 | ID=Msa0406140-mRNA-1:exon:8133;Parent=Msa0406140-mRNA-1 |
| chr3_2 | exon | 42218656 | 42219270 | 42218656 | ID=Msa0406140-mRNA-1:exon:8134;Parent=Msa0406140-mRNA-1 |
| chr3_2 | CDS | 42218238 | 42218564 | 42218238 | ID=Msa0406140-mRNA-1:cds;Parent=Msa0406140-mRNA-1 |
| chr3_2 | CDS | 42218656 | 42219270 | 42218656 | ID=Msa0406140-mRNA-1:cds;Parent=Msa0406140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
