Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787600 | sp|O82368|Y2988_ARATH | 41.520 | 171 | 99 | 1 | 1 | 171 | 1 | 170 | 6.28e-40 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787600 | G7IEU4 | 88.462 | 234 | 20 | 2 | 1 | 227 | 1 | 234 | 3.67e-149 | 427 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012700 | Msa0787600 | 0.834376 | 3.107425e-56 | -8.615850e-47 |
| Msa0013750 | Msa0787600 | 0.816246 | 6.104414e-52 | -8.615850e-47 |
| Msa0015750 | Msa0787600 | 0.841901 | 3.586291e-58 | -8.615850e-47 |
| Msa0016570 | Msa0787600 | 0.856020 | 4.265458e-62 | -8.615850e-47 |
| Msa0016580 | Msa0787600 | 0.830168 | 3.419139e-55 | -8.615850e-47 |
| Msa0102070 | Msa0787600 | 0.873084 | 1.932876e-67 | -8.615850e-47 |
| Msa0110270 | Msa0787600 | 0.814694 | 1.352268e-51 | -8.615850e-47 |
| Msa0111510 | Msa0787600 | 0.826123 | 3.224013e-54 | -8.615850e-47 |
| Msa0604350 | Msa0787600 | 0.823900 | 1.079994e-53 | -8.615850e-47 |
| Msa0636170 | Msa0787600 | 0.849175 | 3.827655e-60 | -8.615850e-47 |
| Msa0639610 | Msa0787600 | 0.811871 | 5.635979e-51 | -8.615850e-47 |
| Msa0678930 | Msa0787600 | 0.861657 | 8.797543e-64 | -8.615850e-47 |
| Msa0689390 | Msa0787600 | 0.810898 | 9.167706e-51 | -8.615850e-47 |
| Msa0694370 | Msa0787600 | 0.829997 | 3.762849e-55 | -8.615850e-47 |
| Msa0725850 | Msa0787600 | 0.807082 | 6.013645e-50 | -8.615850e-47 |
| Msa0726140 | Msa0787600 | 0.888932 | 3.806519e-73 | -8.615850e-47 |
| Msa0729800 | Msa0787600 | 0.879133 | 1.597950e-69 | -8.615850e-47 |
| Msa0732310 | Msa0787600 | 0.817727 | 2.837581e-52 | -8.615850e-47 |
| Msa0732710 | Msa0787600 | 0.814934 | 1.196473e-51 | -8.615850e-47 |
| Msa0733290 | Msa0787600 | 0.861167 | 1.240688e-63 | -8.615850e-47 |
| Msa0741990 | Msa0787600 | 0.818696 | 1.712756e-52 | -8.615850e-47 |
| Msa0743810 | Msa0787600 | 0.885846 | 5.713974e-72 | -8.615850e-47 |
| Msa0745060 | Msa0787600 | 0.892113 | 2.140316e-74 | -8.615850e-47 |
| Msa0764960 | Msa0787600 | 0.804227 | 2.390800e-49 | -8.615850e-47 |
| Msa0767720 | Msa0787600 | 0.875396 | 3.183907e-68 | -8.615850e-47 |
| Msa0777870 | Msa0787600 | 0.830319 | 3.139692e-55 | -8.615850e-47 |
| Msa0783160 | Msa0787600 | 0.895594 | 8.259409e-76 | -8.615850e-47 |
| Msa0787600 | Msa0808010 | 0.871121 | 8.697110e-67 | -8.615850e-47 |
| Msa0787600 | Msa0808020 | 0.862820 | 3.864830e-64 | -8.615850e-47 |
| Msa0787600 | Msa0811080 | 0.822127 | 2.797540e-53 | -8.615850e-47 |
| Msa0787600 | Msa0811270 | 0.807860 | 4.113020e-50 | -8.615850e-47 |
| Msa0787600 | Msa0825860 | 0.886731 | 2.649961e-72 | -8.615850e-47 |
| Msa0787600 | Msa0833290 | 0.854337 | 1.316435e-61 | -8.615850e-47 |
| Msa0787600 | Msa0833300 | 0.817410 | 3.345468e-52 | -8.615850e-47 |
| Msa0787600 | Msa0845930 | 0.803225 | 3.858278e-49 | -8.615850e-47 |
| Msa0787600 | Msa0846210 | 0.835255 | 1.866656e-56 | -8.615850e-47 |
| Msa0787600 | Msa0846330 | 0.859465 | 4.060156e-63 | -8.615850e-47 |
| Msa0787600 | Msa0846350 | 0.872718 | 2.563280e-67 | -8.615850e-47 |
| Msa0787600 | Msa0848960 | 0.829212 | 5.841263e-55 | -8.615850e-47 |
| Msa0787600 | Msa0854980 | 0.803092 | 4.110394e-49 | -8.615850e-47 |
| Msa0787600 | Msa0858980 | 0.830706 | 2.525631e-55 | -8.615850e-47 |
| Msa0787600 | Msa0865320 | 0.863686 | 2.085800e-64 | -8.615850e-47 |
| Msa0787600 | Msa0872230 | 0.821082 | 4.878119e-53 | -8.615850e-47 |
| Msa0787600 | Msa0885280 | 0.819815 | 9.525925e-53 | -8.615850e-47 |
| Msa0787600 | Msa0885290 | 0.864408 | 1.242486e-64 | -8.615850e-47 |
| Msa0787600 | Msa0887920 | 0.825865 | 3.711954e-54 | -8.615850e-47 |
| Msa0787600 | Msa0888370 | 0.856985 | 2.221127e-62 | -8.615850e-47 |
| Msa0787600 | Msa0888420 | 0.820834 | 5.562731e-53 | -8.615850e-47 |
| Msa0787600 | Msa0889850 | 0.804101 | 2.539181e-49 | -8.615850e-47 |
| Msa0787600 | Msa0896080 | 0.844067 | 9.507898e-59 | -8.615850e-47 |
| Msa0787600 | Msa0907260 | 0.822698 | 2.061032e-53 | -8.615850e-47 |
| Msa0787600 | Msa0952350 | 0.806632 | 7.484161e-50 | -8.615850e-47 |
| Msa0787600 | Msa0952720 | 0.804772 | 1.839874e-49 | -8.615850e-47 |
| Msa0787600 | Msa0954020 | 0.802055 | 6.725933e-49 | -8.615850e-47 |
| Msa0787600 | Msa0956270 | 0.821963 | 3.053363e-53 | -8.615850e-47 |
| Msa0787600 | Msa0957680 | 0.812838 | 3.465616e-51 | -8.615850e-47 |
| Msa0787600 | Msa0969260 | 0.816311 | 5.903637e-52 | -8.615850e-47 |
| Msa0787600 | Msa0979850 | 0.859752 | 3.327831e-63 | -8.615850e-47 |
| Msa0787600 | Msa0981370 | 0.850322 | 1.830681e-60 | -8.615850e-47 |
| Msa0787600 | Msa0989060 | 0.850065 | 2.159927e-60 | -8.615850e-47 |
| Msa0787600 | Msa1016280 | 0.886515 | 3.199067e-72 | -8.615850e-47 |
| Msa0787600 | Msa1024240 | 0.859284 | 4.599723e-63 | -8.615850e-47 |
| Msa0787600 | Msa1025360 | 0.898829 | 3.612854e-77 | -8.615850e-47 |
| Msa0787600 | Msa1025370 | 0.906651 | 1.181443e-80 | -8.615850e-47 |
| Msa0787600 | Msa1030060 | 0.817709 | 2.864808e-52 | -8.615850e-47 |
| Msa0787600 | Msa1044830 | 0.896840 | 2.505942e-76 | -8.615850e-47 |
| Msa0787600 | Msa1044840 | 0.898755 | 3.887781e-77 | -8.615850e-47 |
| Msa0787600 | Msa1060840 | 0.846953 | 1.570566e-59 | -8.615850e-47 |
| Msa0787600 | Msa1062810 | 0.805643 | 1.208741e-49 | -8.615850e-47 |
| Msa0787600 | Msa1077460 | 0.818302 | 2.104413e-52 | -8.615850e-47 |
| Msa0787600 | Msa1087490 | 0.805729 | 1.159607e-49 | -8.615850e-47 |
| Msa0787600 | Msa1092990 | 0.870979 | 9.686639e-67 | -8.615850e-47 |
| Msa0787600 | Msa1096580 | 0.812602 | 3.903209e-51 | -8.615850e-47 |
| Msa0787600 | Msa1099970 | 0.810364 | 1.195753e-50 | -8.615850e-47 |
| Msa0787600 | Msa1100980 | 0.895265 | 1.129016e-75 | -8.615850e-47 |
| Msa0787600 | Msa1109440 | 0.874617 | 5.873390e-68 | -8.615850e-47 |
| Msa0787600 | Msa1121200 | 0.876100 | 1.826029e-68 | -8.615850e-47 |
| Msa0787600 | Msa1121480 | 0.802096 | 6.597089e-49 | -8.615850e-47 |
| Msa0787600 | Msa1135740 | 0.876226 | 1.651822e-68 | -8.615850e-47 |
| Msa0787600 | Msa1136090 | 0.823748 | 1.172292e-53 | -8.615850e-47 |
| Msa0787600 | Msa1146110 | 0.884755 | 1.461813e-71 | -8.615850e-47 |
| Msa0787600 | Msa1149360 | 0.838753 | 2.384540e-57 | -8.615850e-47 |
| Msa0787600 | Msa1150370 | 0.852089 | 5.801828e-61 | -8.615850e-47 |
| Msa0787600 | Msa1160670 | 0.813099 | 3.038674e-51 | -8.615850e-47 |
| Msa0787600 | Msa1164120 | 0.813166 | 2.937396e-51 | -8.615850e-47 |
| Msa0787600 | Msa1173920 | 0.841281 | 5.227570e-58 | -8.615850e-47 |
| Msa0787600 | Msa1182090 | 0.811265 | 7.631979e-51 | -8.615850e-47 |
| Msa0787600 | Msa1187940 | 0.878531 | 2.605120e-69 | -8.615850e-47 |
| Msa0787600 | Msa1187950 | 0.858778 | 6.520846e-63 | -8.615850e-47 |
| Msa0787600 | Msa1192640 | 0.891997 | 2.382014e-74 | -8.615850e-47 |
| Msa0787600 | Msa1230430 | 0.821022 | 5.035842e-53 | -8.615850e-47 |
| Msa0787600 | Msa1246880 | 0.844521 | 7.180537e-59 | -8.615850e-47 |
| Msa0787600 | Msa1248310 | 0.803071 | 4.151497e-49 | -8.615850e-47 |
| Msa0787600 | Msa1251910 | 0.802282 | 6.040846e-49 | -8.615850e-47 |
| Msa0787600 | Msa1260100 | 0.832106 | 1.142380e-55 | -8.615850e-47 |
| Msa0787600 | Msa1269670 | 0.890778 | 7.243716e-74 | -8.615850e-47 |
| Msa0787600 | Msa1270230 | 0.913158 | 8.507844e-84 | -8.615850e-47 |
| Msa0787600 | Msa1270240 | 0.883743 | 3.464576e-71 | -8.615850e-47 |
| Msa0787600 | Msa1270270 | 0.864641 | 1.050265e-64 | -8.615850e-47 |
| Msa0787600 | Msa1273230 | 0.810867 | 9.310121e-51 | -8.615850e-47 |
| Msa0787600 | Msa1283330 | 0.876953 | 9.264313e-69 | -8.615850e-47 |
| Msa0787600 | Msa1285930 | 0.900667 | 5.822321e-78 | -8.615850e-47 |
| Msa0787600 | Msa1287800 | 0.896310 | 4.172077e-76 | -8.615850e-47 |
| Msa0787600 | Msa1287810 | 0.922654 | 7.422492e-89 | -8.615850e-47 |
| Msa0787600 | Msa1287820 | 0.825942 | 3.560346e-54 | -8.615850e-47 |
| Msa0787600 | Msa1287830 | 0.832019 | 1.200272e-55 | -8.615850e-47 |
| Msa0787600 | Msa1289420 | 0.820455 | 6.796723e-53 | -8.615850e-47 |
| Msa0787600 | Msa1289430 | 0.853002 | 3.185848e-61 | -8.615850e-47 |
| Msa0787600 | Msa1297210 | 0.825238 | 5.227586e-54 | -8.615850e-47 |
| Msa0787600 | Msa1305480 | 0.831345 | 1.759983e-55 | -8.615850e-47 |
| Msa0787600 | Msa1307890 | 0.863167 | 3.020506e-64 | -8.615850e-47 |
| Msa0787600 | Msa1310120 | 0.842659 | 2.258587e-58 | -8.615850e-47 |
| Msa0787600 | Msa1314280 | 0.820666 | 6.079328e-53 | -8.615850e-47 |
| Msa0787600 | Msa1320300 | 0.857202 | 1.916848e-62 | -8.615850e-47 |
| Msa0787600 | Msa1321560 | 0.803491 | 3.398846e-49 | -8.615850e-47 |
| Msa0787600 | Msa1340590 | 0.857632 | 1.429620e-62 | -8.615850e-47 |
| Msa0787600 | Msa1342200 | 0.843740 | 1.163592e-58 | -8.615850e-47 |
| Msa0787600 | Msa1369430 | 0.810456 | 1.142597e-50 | -8.615850e-47 |
| Msa0787600 | Msa1382690 | 0.820302 | 7.369195e-53 | -8.615850e-47 |
| Msa0787600 | Msa1397580 | 0.852424 | 4.657482e-61 | -8.615850e-47 |
| Msa0787600 | Msa1402790 | 0.808742 | 2.667285e-50 | -8.615850e-47 |
| Msa0787600 | Msa1404000 | 0.890731 | 7.559244e-74 | -8.615850e-47 |
| Msa0787600 | Msa1408780 | 0.853743 | 1.952286e-61 | -8.615850e-47 |
| Msa0787600 | Msa1415310 | 0.880633 | 4.672540e-70 | -8.615850e-47 |
| Msa0787600 | Msa1422180 | 0.867422 | 1.384680e-65 | -8.615850e-47 |
| Msa0787600 | Msa1433120 | 0.874741 | 5.328508e-68 | -8.615850e-47 |
| Msa0787600 | Msa1451570 | 0.813693 | 2.249154e-51 | -8.615850e-47 |
| Msa0124100 | Msa0787600 | 0.835472 | 1.645055e-56 | -8.615850e-47 |
| Msa0124150 | Msa0787600 | 0.822066 | 2.889483e-53 | -8.615850e-47 |
| Msa0142220 | Msa0787600 | 0.852893 | 3.422502e-61 | -8.615850e-47 |
| Msa0145750 | Msa0787600 | 0.845046 | 5.182789e-59 | -8.615850e-47 |
| Msa0153910 | Msa0787600 | 0.827015 | 1.975877e-54 | -8.615850e-47 |
| Msa0200000 | Msa0787600 | 0.842874 | 1.980896e-58 | -8.615850e-47 |
| Msa0227480 | Msa0787600 | 0.870887 | 1.038678e-66 | -8.615850e-47 |
| Msa0231000 | Msa0787600 | 0.819590 | 1.072049e-52 | -8.615850e-47 |
| Msa0232850 | Msa0787600 | 0.823915 | 1.070847e-53 | -8.615850e-47 |
| Msa0235140 | Msa0787600 | 0.819408 | 1.179785e-52 | -8.615850e-47 |
| Msa0365500 | Msa0787600 | 0.845783 | 3.273571e-59 | -8.615850e-47 |
| Msa0366430 | Msa0787600 | 0.802218 | 6.225764e-49 | -8.615850e-47 |
| Msa0366580 | Msa0787600 | 0.826391 | 2.783657e-54 | -8.615850e-47 |
| Msa0379940 | Msa0787600 | 0.814257 | 1.688845e-51 | -8.615850e-47 |
| Msa0384800 | Msa0787600 | 0.877542 | 5.782180e-69 | -8.615850e-47 |
| Msa0394970 | Msa0787600 | 0.824156 | 9.402993e-54 | -8.615850e-47 |
| Msa0406120 | Msa0787600 | 0.840365 | 9.088134e-58 | -8.615850e-47 |
| Msa0406140 | Msa0787600 | 0.805257 | 1.456559e-49 | -8.615850e-47 |
| Msa0407750 | Msa0787600 | 0.815289 | 9.979401e-52 | -8.615850e-47 |
| Msa0414410 | Msa0787600 | 0.892557 | 1.422686e-74 | -8.615850e-47 |
| Msa0414420 | Msa0787600 | 0.904386 | 1.295226e-79 | -8.615850e-47 |
| Msa0423020 | Msa0787600 | 0.805936 | 1.049097e-49 | -8.615850e-47 |
| Msa0436780 | Msa0787600 | 0.855525 | 5.952726e-62 | -8.615850e-47 |
| Msa0436800 | Msa0787600 | 0.828140 | 1.060954e-54 | -8.615850e-47 |
| Msa0438620 | Msa0787600 | 0.853062 | 3.062134e-61 | -8.615850e-47 |
| Msa0450000 | Msa0787600 | 0.843315 | 1.511384e-58 | -8.615850e-47 |
| Msa0450570 | Msa0787600 | 0.829167 | 5.988529e-55 | -8.615850e-47 |
| Msa0451730 | Msa0787600 | 0.832004 | 1.210117e-55 | -8.615850e-47 |
| Msa0452900 | Msa0787600 | 0.920120 | 1.912591e-87 | -8.615850e-47 |
| Msa0453120 | Msa0787600 | 0.888626 | 4.996515e-73 | -8.615850e-47 |
| Msa0454370 | Msa0787600 | 0.851314 | 9.620930e-61 | -8.615850e-47 |
| Msa0454910 | Msa0787600 | 0.870699 | 1.198003e-66 | -8.615850e-47 |
| Msa0459160 | Msa0787600 | 0.856618 | 2.847683e-62 | -8.615850e-47 |
| Msa0459170 | Msa0787600 | 0.831638 | 1.490028e-55 | -8.615850e-47 |
| Msa0247260 | Msa0787600 | 0.801381 | 9.250130e-49 | -8.615850e-47 |
| Msa0267000 | Msa0787600 | 0.894485 | 2.359155e-75 | -8.615850e-47 |
| Msa0267010 | Msa0787600 | 0.892844 | 1.090668e-74 | -8.615850e-47 |
| Msa0270520 | Msa0787600 | 0.837961 | 3.816662e-57 | -8.615850e-47 |
| Msa0285810 | Msa0787600 | 0.809099 | 2.236876e-50 | -8.615850e-47 |
| Msa0290870 | Msa0787600 | 0.800284 | 1.549062e-48 | -8.615850e-47 |
| Msa0304170 | Msa0787600 | 0.840222 | 9.903513e-58 | -8.615850e-47 |
| Msa0306460 | Msa0787600 | 0.836239 | 1.051215e-56 | -8.615850e-47 |
| Msa0313760 | Msa0787600 | 0.843087 | 1.737978e-58 | -8.615850e-47 |
| Msa0342240 | Msa0787600 | 0.895423 | 9.717258e-76 | -8.615850e-47 |
| Msa0359370 | Msa0787600 | 0.810199 | 1.298224e-50 | -8.615850e-47 |
| Msa0360510 | Msa0787600 | 0.884399 | 1.982062e-71 | -8.615850e-47 |
| Msa0362420 | Msa0787600 | 0.805453 | 1.325553e-49 | -8.615850e-47 |
| Msa0363300 | Msa0787600 | 0.844860 | 5.821017e-59 | -8.615850e-47 |
| Msa0485030 | Msa0787600 | 0.823748 | 1.171917e-53 | -8.615850e-47 |
| Msa0491590 | Msa0787600 | 0.862551 | 4.679407e-64 | -8.615850e-47 |
| Msa0502760 | Msa0787600 | 0.844030 | 9.730629e-59 | -8.615850e-47 |
| Msa0506190 | Msa0787600 | 0.803573 | 3.268086e-49 | -8.615850e-47 |
| Msa0506270 | Msa0787600 | 0.871358 | 7.264873e-67 | -8.615850e-47 |
| Msa0534540 | Msa0787600 | 0.837995 | 3.739147e-57 | -8.615850e-47 |
| Msa0564890 | Msa0787600 | 0.897356 | 1.522901e-76 | -8.615850e-47 |
| Msa0596150 | Msa0787600 | 0.833504 | 5.135096e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787600 | MtrunA17_Chr1g0207381 | 88.034 | 234 | 21 | 2 | 1 | 227 | 1 | 234 | 1.96e-152 | 427 |
| Msa0787600 | MtrunA17_Chr4g0051721 | 89.637 | 193 | 20 | 0 | 1 | 193 | 1 | 193 | 9.50e-131 | 366 |
| Msa0787600 | MtrunA17_Chr3g0093841 | 29.193 | 161 | 110 | 3 | 9 | 169 | 15 | 171 | 1.52e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787600 | AT5G27260.1 | 43.976 | 166 | 87 | 2 | 1 | 166 | 1 | 160 | 9.95e-42 | 144 |
| Msa0787600 | AT2G29880.1 | 41.520 | 171 | 99 | 1 | 1 | 171 | 1 | 170 | 6.38e-41 | 142 |
| Msa0787600 | AT1G30140.2 | 35.862 | 145 | 89 | 1 | 12 | 156 | 7 | 147 | 5.67e-30 | 111 |
| Msa0787600 | AT1G30140.1 | 35.862 | 145 | 89 | 1 | 12 | 156 | 7 | 147 | 5.67e-30 | 111 |
Find 39 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATAACAACTCTGGTTT+TGG | 0.268759 | 5_2:+73514022 | Msa0787600:CDS |
| TGAGTTGTTGTTCCTCTTAG+TGG | 0.299201 | 5_2:+73513829 | Msa0787600:CDS |
| TACGGTGGTTCATAGTTATC+TGG | 0.342012 | 5_2:-73514407 | None:intergenic |
| GAGCAAGAAAGTGAAAGTTT+TGG | 0.364343 | 5_2:+73514338 | Msa0787600:CDS |
| AGTATGGAGTAATTACTTAA+AGG | 0.368835 | 5_2:+73514084 | Msa0787600:CDS |
| GAGTTCTAAACCACTTCATT+CGG | 0.405087 | 5_2:-73513976 | None:intergenic |
| GATTATTTGAAGATTCTTGT+TGG | 0.439501 | 5_2:+73514248 | Msa0787600:CDS |
| TGCTATGAATGCATCACTCT+TGG | 0.440181 | 5_2:-73514384 | None:intergenic |
| TTGAAGATTCTTGTTGGAGG+TGG | 0.445118 | 5_2:+73514254 | Msa0787600:CDS |
| GTTGGTTAGGTGATGGAGGT+TGG | 0.445510 | 5_2:-73514430 | None:intergenic |
| ACACGGCTACTGAAGAAGTA+TGG | 0.447236 | 5_2:+73514068 | Msa0787600:CDS |
| TCACAACAAGAAAATAATAG+AGG | 0.460305 | 5_2:+73513755 | Msa0787600:CDS |
| TTAGTGGATGCTATAAATAG+AGG | 0.470322 | 5_2:+73513845 | Msa0787600:CDS |
| GCTATGAATGCATCACTCTT+GGG | 0.472761 | 5_2:-73514383 | None:intergenic |
| GATGGTGGAGTAGGTTGGTT+AGG | 0.483841 | 5_2:-73514443 | None:intergenic |
| TTAGGTGATGGAGGTTGGTA+CGG | 0.489944 | 5_2:-73514425 | None:intergenic |
| ACAAAGATGGCTATGTAGCT+TGG | 0.511243 | 5_2:+73513789 | Msa0787600:CDS |
| GTAGGTTGGTTAGGTGATGG+AGG | 0.512588 | 5_2:-73514434 | None:intergenic |
| ACGTTTATGCATAACAACTC+TGG | 0.513410 | 5_2:+73514016 | Msa0787600:CDS |
| CAACTCATTAGTTTCTTCCA+TGG | 0.518120 | 5_2:-73513813 | None:intergenic |
| GAGGGTTACGTGATGCCAAT+GGG | 0.518455 | 5_2:+73513864 | Msa0787600:CDS |
| TATTTATAGCATCCACTAAG+AGG | 0.521289 | 5_2:-73513841 | None:intergenic |
| AATGGGATGGTGGAGTAGGT+TGG | 0.522124 | 5_2:-73514448 | None:intergenic |
| CAAGAAAATAATAGAGGGAA+AGG | 0.525413 | 5_2:+73513761 | Msa0787600:CDS |
| GGAGTAGGTTGGTTAGGTGA+TGG | 0.533493 | 5_2:-73514437 | None:intergenic |
| TTGTTTACTAAGTGACCCAT+TGG | 0.535974 | 5_2:-73513879 | None:intergenic |
| TTGGAGGTGGAGTGTCTAGC+GGG | 0.545573 | 5_2:+73514267 | Msa0787600:CDS |
| AGAGGGTTACGTGATGCCAA+TGG | 0.546890 | 5_2:+73513863 | Msa0787600:CDS |
| AAATAATAGAGGGAAAGGTA+AGG | 0.567458 | 5_2:+73513766 | Msa0787600:CDS |
| ATTACTTGAGCCGAATGAAG+TGG | 0.570458 | 5_2:+73513966 | Msa0787600:CDS |
| TGGCTATGTAGCTTGGACCA+TGG | 0.580657 | 5_2:+73513796 | Msa0787600:CDS |
| GGGAAAGGTAAGGACAAAGA+TGG | 0.591698 | 5_2:+73513776 | Msa0787600:CDS |
| CACAACAAGAAAATAATAGA+GGG | 0.595053 | 5_2:+73513756 | Msa0787600:CDS |
| TATTTGAAGATTCTTGTTGG+AGG | 0.595361 | 5_2:+73514251 | Msa0787600:CDS |
| TTCTATAGCATTAGACGCTG+AGG | 0.600384 | 5_2:+73514295 | Msa0787600:CDS |
| TAGTGGATGCTATAAATAGA+GGG | 0.602040 | 5_2:+73513846 | Msa0787600:CDS |
| GGTGATGGAGGTTGGTACGG+TGG | 0.605354 | 5_2:-73514422 | None:intergenic |
| GTTGGAGGTGGAGTGTCTAG+CGG | 0.610018 | 5_2:+73514266 | Msa0787600:CDS |
| TTCAGTTGCAAAGACTTACA+CGG | 0.635359 | 5_2:+73514051 | Msa0787600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TCACAACAAGAAAATAATAG+AGG | + | chr5_2:73513755-73513774 | Msa0787600:CDS | 25.0% |
| ! | CACAACAAGAAAATAATAGA+GGG | + | chr5_2:73513756-73513775 | Msa0787600:CDS | 25.0% |
| !!! | AGTTTTTTGTGATTCAGTTT+TGG | - | chr5_2:73513939-73513958 | None:intergenic | 25.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | + | chr5_2:73514084-73514103 | Msa0787600:CDS | 25.0% |
| !!! | AATATTTTTGTGAGATGGAT+GGG | - | chr5_2:73514204-73514223 | None:intergenic | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | + | chr5_2:73514248-73514267 | Msa0787600:CDS | 25.0% |
| ! | CTCTGAATCTAAAGAAAAAT+GGG | - | chr5_2:73514468-73514487 | None:intergenic | 25.0% |
| ! | TCACAACAAGAAAATAATAG+AGG | + | chr5_2:73513755-73513774 | Msa0787600:CDS | 25.0% |
| ! | CACAACAAGAAAATAATAGA+GGG | + | chr5_2:73513756-73513775 | Msa0787600:CDS | 25.0% |
| !!! | AGTTTTTTGTGATTCAGTTT+TGG | - | chr5_2:73513939-73513958 | None:intergenic | 25.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | + | chr5_2:73514084-73514103 | Msa0787600:CDS | 25.0% |
| !!! | AATATTTTTGTGAGATGGAT+GGG | - | chr5_2:73514204-73514223 | None:intergenic | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | + | chr5_2:73514248-73514267 | Msa0787600:CDS | 25.0% |
| ! | CTCTGAATCTAAAGAAAAAT+GGG | - | chr5_2:73514468-73514487 | None:intergenic | 25.0% |
| CAAGAAAATAATAGAGGGAA+AGG | + | chr5_2:73513761-73513780 | Msa0787600:CDS | 30.0% | |
| AAATAATAGAGGGAAAGGTA+AGG | + | chr5_2:73513766-73513785 | Msa0787600:CDS | 30.0% | |
| TATTTATAGCATCCACTAAG+AGG | - | chr5_2:73513844-73513863 | None:intergenic | 30.0% | |
| ! | TTAGTGGATGCTATAAATAG+AGG | + | chr5_2:73513845-73513864 | Msa0787600:CDS | 30.0% |
| ! | TAGTGGATGCTATAAATAGA+GGG | + | chr5_2:73513846-73513865 | Msa0787600:CDS | 30.0% |
| !! | GAATATTTTTGTGAGATGGA+TGG | - | chr5_2:73514205-73514224 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | + | chr5_2:73514251-73514270 | Msa0787600:CDS | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | + | chr5_2:73514343-73514362 | Msa0787600:CDS | 30.0% |
| GAATCTAAAGAAAAATGGGA+TGG | - | chr5_2:73514464-73514483 | None:intergenic | 30.0% | |
| CCTCTGAATCTAAAGAAAAA+TGG | - | chr5_2:73514469-73514488 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTAGATTCAG+AGG | + | chr5_2:73514466-73514485 | Msa0787600:CDS | 30.0% |
| !! | TGACGATTTCGTTTTTCAAT+AGG | - | chr5_2:73514494-73514513 | None:intergenic | 30.0% |
| CAAGAAAATAATAGAGGGAA+AGG | + | chr5_2:73513761-73513780 | Msa0787600:CDS | 30.0% | |
| AAATAATAGAGGGAAAGGTA+AGG | + | chr5_2:73513766-73513785 | Msa0787600:CDS | 30.0% | |
| TATTTATAGCATCCACTAAG+AGG | - | chr5_2:73513844-73513863 | None:intergenic | 30.0% | |
| ! | TTAGTGGATGCTATAAATAG+AGG | + | chr5_2:73513845-73513864 | Msa0787600:CDS | 30.0% |
| ! | TAGTGGATGCTATAAATAGA+GGG | + | chr5_2:73513846-73513865 | Msa0787600:CDS | 30.0% |
| !! | GAATATTTTTGTGAGATGGA+TGG | - | chr5_2:73514205-73514224 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | + | chr5_2:73514251-73514270 | Msa0787600:CDS | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | + | chr5_2:73514343-73514362 | Msa0787600:CDS | 30.0% |
| GAATCTAAAGAAAAATGGGA+TGG | - | chr5_2:73514464-73514483 | None:intergenic | 30.0% | |
| CCTCTGAATCTAAAGAAAAA+TGG | - | chr5_2:73514469-73514488 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTAGATTCAG+AGG | + | chr5_2:73514466-73514485 | Msa0787600:CDS | 30.0% |
| !! | TGACGATTTCGTTTTTCAAT+AGG | - | chr5_2:73514494-73514513 | None:intergenic | 30.0% |
| ! | CAACTCATTAGTTTCTTCCA+TGG | - | chr5_2:73513816-73513835 | None:intergenic | 35.0% |
| TTGTTTACTAAGTGACCCAT+TGG | - | chr5_2:73513882-73513901 | None:intergenic | 35.0% | |
| !! | GAGTTCTAAACCACTTCATT+CGG | - | chr5_2:73513979-73513998 | None:intergenic | 35.0% |
| ACGTTTATGCATAACAACTC+TGG | + | chr5_2:73514016-73514035 | Msa0787600:CDS | 35.0% | |
| !! | ATGCATAACAACTCTGGTTT+TGG | + | chr5_2:73514022-73514041 | Msa0787600:CDS | 35.0% |
| !!! | ATAACAACTCTGGTTTTGGA+TGG | + | chr5_2:73514026-73514045 | Msa0787600:CDS | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | + | chr5_2:73514027-73514046 | Msa0787600:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | + | chr5_2:73514051-73514070 | Msa0787600:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | - | chr5_2:73514209-73514228 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | + | chr5_2:73514206-73514225 | Msa0787600:CDS | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | + | chr5_2:73514338-73514357 | Msa0787600:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | + | chr5_2:73514347-73514366 | Msa0787600:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | + | chr5_2:73514348-73514367 | Msa0787600:CDS | 35.0% |
| TCTAAAGAAAAATGGGATGG+TGG | - | chr5_2:73514461-73514480 | None:intergenic | 35.0% | |
| ! | CAACTCATTAGTTTCTTCCA+TGG | - | chr5_2:73513816-73513835 | None:intergenic | 35.0% |
| TTGTTTACTAAGTGACCCAT+TGG | - | chr5_2:73513882-73513901 | None:intergenic | 35.0% | |
| !! | GAGTTCTAAACCACTTCATT+CGG | - | chr5_2:73513979-73513998 | None:intergenic | 35.0% |
| ACGTTTATGCATAACAACTC+TGG | + | chr5_2:73514016-73514035 | Msa0787600:CDS | 35.0% | |
| !! | ATGCATAACAACTCTGGTTT+TGG | + | chr5_2:73514022-73514041 | Msa0787600:CDS | 35.0% |
| !!! | ATAACAACTCTGGTTTTGGA+TGG | + | chr5_2:73514026-73514045 | Msa0787600:CDS | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | + | chr5_2:73514027-73514046 | Msa0787600:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | + | chr5_2:73514051-73514070 | Msa0787600:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | - | chr5_2:73514209-73514228 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | + | chr5_2:73514206-73514225 | Msa0787600:CDS | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | + | chr5_2:73514338-73514357 | Msa0787600:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | + | chr5_2:73514347-73514366 | Msa0787600:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | + | chr5_2:73514348-73514367 | Msa0787600:CDS | 35.0% |
| TCTAAAGAAAAATGGGATGG+TGG | - | chr5_2:73514461-73514480 | None:intergenic | 35.0% | |
| ACAAAGATGGCTATGTAGCT+TGG | + | chr5_2:73513789-73513808 | Msa0787600:CDS | 40.0% | |
| ! | TGAGTTGTTGTTCCTCTTAG+TGG | + | chr5_2:73513829-73513848 | Msa0787600:CDS | 40.0% |
| !! | TTTTGGTATTGAGCTGAGGA+AGG | - | chr5_2:73513922-73513941 | None:intergenic | 40.0% |
| !! | TCAGTTTTGGTATTGAGCTG+AGG | - | chr5_2:73513926-73513945 | None:intergenic | 40.0% |
| ATTACTTGAGCCGAATGAAG+TGG | + | chr5_2:73513966-73513985 | Msa0787600:CDS | 40.0% | |
| TTGAAGATTCTTGTTGGAGG+TGG | + | chr5_2:73514254-73514273 | Msa0787600:CDS | 40.0% | |
| TTCTATAGCATTAGACGCTG+AGG | + | chr5_2:73514295-73514314 | Msa0787600:CDS | 40.0% | |
| GCTATGAATGCATCACTCTT+GGG | - | chr5_2:73514386-73514405 | None:intergenic | 40.0% | |
| TGCTATGAATGCATCACTCT+TGG | - | chr5_2:73514387-73514406 | None:intergenic | 40.0% | |
| TACGGTGGTTCATAGTTATC+TGG | - | chr5_2:73514410-73514429 | None:intergenic | 40.0% | |
| ACAAAGATGGCTATGTAGCT+TGG | + | chr5_2:73513789-73513808 | Msa0787600:CDS | 40.0% | |
| ! | TGAGTTGTTGTTCCTCTTAG+TGG | + | chr5_2:73513829-73513848 | Msa0787600:CDS | 40.0% |
| !! | TTTTGGTATTGAGCTGAGGA+AGG | - | chr5_2:73513922-73513941 | None:intergenic | 40.0% |
| !! | TCAGTTTTGGTATTGAGCTG+AGG | - | chr5_2:73513926-73513945 | None:intergenic | 40.0% |
| ATTACTTGAGCCGAATGAAG+TGG | + | chr5_2:73513966-73513985 | Msa0787600:CDS | 40.0% | |
| TTGAAGATTCTTGTTGGAGG+TGG | + | chr5_2:73514254-73514273 | Msa0787600:CDS | 40.0% | |
| TTCTATAGCATTAGACGCTG+AGG | + | chr5_2:73514295-73514314 | Msa0787600:CDS | 40.0% | |
| GCTATGAATGCATCACTCTT+GGG | - | chr5_2:73514386-73514405 | None:intergenic | 40.0% | |
| TGCTATGAATGCATCACTCT+TGG | - | chr5_2:73514387-73514406 | None:intergenic | 40.0% | |
| TACGGTGGTTCATAGTTATC+TGG | - | chr5_2:73514410-73514429 | None:intergenic | 40.0% | |
| GGGAAAGGTAAGGACAAAGA+TGG | + | chr5_2:73513776-73513795 | Msa0787600:CDS | 45.0% | |
| ACACGGCTACTGAAGAAGTA+TGG | + | chr5_2:73514068-73514087 | Msa0787600:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+CGG | - | chr5_2:73514428-73514447 | None:intergenic | 45.0% |
| !! | GAAAAATGGGATGGTGGAGT+AGG | - | chr5_2:73514455-73514474 | None:intergenic | 45.0% |
| GGGAAAGGTAAGGACAAAGA+TGG | + | chr5_2:73513776-73513795 | Msa0787600:CDS | 45.0% | |
| ACACGGCTACTGAAGAAGTA+TGG | + | chr5_2:73514068-73514087 | Msa0787600:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+CGG | - | chr5_2:73514428-73514447 | None:intergenic | 45.0% |
| !! | GAAAAATGGGATGGTGGAGT+AGG | - | chr5_2:73514455-73514474 | None:intergenic | 45.0% |
| TGGCTATGTAGCTTGGACCA+TGG | + | chr5_2:73513796-73513815 | Msa0787600:CDS | 50.0% | |
| AGAGGGTTACGTGATGCCAA+TGG | + | chr5_2:73513863-73513882 | Msa0787600:CDS | 50.0% | |
| GAGGGTTACGTGATGCCAAT+GGG | + | chr5_2:73513864-73513883 | Msa0787600:CDS | 50.0% | |
| !! | GTTGGTTAGGTGATGGAGGT+TGG | - | chr5_2:73514433-73514452 | None:intergenic | 50.0% |
| !! | GTAGGTTGGTTAGGTGATGG+AGG | - | chr5_2:73514437-73514456 | None:intergenic | 50.0% |
| !! | GGAGTAGGTTGGTTAGGTGA+TGG | - | chr5_2:73514440-73514459 | None:intergenic | 50.0% |
| !! | GATGGTGGAGTAGGTTGGTT+AGG | - | chr5_2:73514446-73514465 | None:intergenic | 50.0% |
| !! | AATGGGATGGTGGAGTAGGT+TGG | - | chr5_2:73514451-73514470 | None:intergenic | 50.0% |
| TGGCTATGTAGCTTGGACCA+TGG | + | chr5_2:73513796-73513815 | Msa0787600:CDS | 50.0% | |
| AGAGGGTTACGTGATGCCAA+TGG | + | chr5_2:73513863-73513882 | Msa0787600:CDS | 50.0% | |
| GAGGGTTACGTGATGCCAAT+GGG | + | chr5_2:73513864-73513883 | Msa0787600:CDS | 50.0% | |
| !! | GTTGGTTAGGTGATGGAGGT+TGG | - | chr5_2:73514433-73514452 | None:intergenic | 50.0% |
| !! | GTAGGTTGGTTAGGTGATGG+AGG | - | chr5_2:73514437-73514456 | None:intergenic | 50.0% |
| !! | GGAGTAGGTTGGTTAGGTGA+TGG | - | chr5_2:73514440-73514459 | None:intergenic | 50.0% |
| !! | GATGGTGGAGTAGGTTGGTT+AGG | - | chr5_2:73514446-73514465 | None:intergenic | 50.0% |
| !! | AATGGGATGGTGGAGTAGGT+TGG | - | chr5_2:73514451-73514470 | None:intergenic | 50.0% |
| ! | GTTGGAGGTGGAGTGTCTAG+CGG | + | chr5_2:73514266-73514285 | Msa0787600:CDS | 55.0% |
| ! | TTGGAGGTGGAGTGTCTAGC+GGG | + | chr5_2:73514267-73514286 | Msa0787600:CDS | 55.0% |
| ! | GTTGGAGGTGGAGTGTCTAG+CGG | + | chr5_2:73514266-73514285 | Msa0787600:CDS | 55.0% |
| ! | TTGGAGGTGGAGTGTCTAGC+GGG | + | chr5_2:73514267-73514286 | Msa0787600:CDS | 55.0% |
| !! | GGTGATGGAGGTTGGTACGG+TGG | - | chr5_2:73514425-73514444 | None:intergenic | 60.0% |
| !! | GGTGATGGAGGTTGGTACGG+TGG | - | chr5_2:73514425-73514444 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 73513746 | 73514523 | 73513746 | ID=Msa0787600;Name=Msa0787600 |
| chr5_2 | mRNA | 73513746 | 73514523 | 73513746 | ID=Msa0787600-mRNA-1;Parent=Msa0787600;Name=Msa0787600-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|2|0|227 |
| chr5_2 | exon | 73513746 | 73514105 | 73513746 | ID=Msa0787600-mRNA-1:exon:22395;Parent=Msa0787600-mRNA-1 |
| chr5_2 | exon | 73514200 | 73514523 | 73514200 | ID=Msa0787600-mRNA-1:exon:22396;Parent=Msa0787600-mRNA-1 |
| chr5_2 | CDS | 73513746 | 73514105 | 73513746 | ID=Msa0787600-mRNA-1:cds;Parent=Msa0787600-mRNA-1 |
| chr5_2 | CDS | 73514200 | 73514523 | 73514200 | ID=Msa0787600-mRNA-1:cds;Parent=Msa0787600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
