AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0406750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0406750 MtrunA17_Chr3g0144361 96.881 481 14 1 1 480 1 481 0.0 923
Msa0406750 MtrunA17_Chr4g0034681 82.609 483 79 2 1 480 1 481 0.0 819
Msa0406750 MtrunA17_Chr4g0036021 76.667 480 109 1 1 480 1 477 0.0 742
Msa0406750 MtrunA17_Chr8g0373531 61.874 459 171 3 24 480 16 472 0.0 562
Msa0406750 MtrunA17_Chr5g0432581 57.952 459 189 3 24 480 16 472 0.0 543
Msa0406750 MtrunA17_Chr6g0485661 55.439 478 199 2 3 480 37 500 0.0 531
Msa0406750 MtrunA17_Chr2g0282031 53.030 462 201 4 19 480 45 490 2.69e-169 487
Msa0406750 MtrunA17_Chr4g0021771 50.000 476 218 4 5 480 37 492 1.78e-163 473
Msa0406750 MtrunA17_Chr8g0390521 50.638 470 219 4 14 480 2 461 4.08e-156 452
Msa0406750 MtrunA17_Chr5g0403831 47.708 480 248 2 3 480 7 485 5.08e-154 447
Msa0406750 MtrunA17_Chr7g0214451 32.135 473 294 7 14 480 18 469 8.84e-72 236
Msa0406750 MtrunA17_Chr4g0039651 32.317 492 293 11 10 480 18 490 6.81e-71 233
Msa0406750 MtrunA17_Chr1g0213611 31.237 477 297 7 14 480 63 518 3.12e-69 230
Msa0406750 MtrunA17_Chr1g0213631 32.118 439 274 6 46 480 4 422 1.90e-64 215
Msa0406750 MtrunA17_Chr4g0032021 32.211 475 289 10 22 480 87 544 2.97e-64 217
Msa0406750 MtrunA17_Chr7g0250881 31.250 480 291 12 8 480 45 492 6.82e-59 202
Msa0406750 MtrunA17_Chr3g0115781 30.462 476 280 12 31 480 29 479 1.18e-57 198
Msa0406750 MtrunA17_Chr6g0457781 31.197 468 286 12 17 480 97 532 3.65e-56 195
Msa0406750 MtrunA17_Chr2g0303731 33.516 364 210 6 24 379 23 362 6.01e-55 193
Msa0406750 MtrunA17_Chr5g0420841 30.081 492 293 13 17 480 10 478 8.65e-55 191
Msa0406750 MtrunA17_Chr5g0394341 29.202 476 287 10 31 480 26 477 9.21e-55 191
Msa0406750 MtrunA17_Chr3g0115721 29.747 474 286 10 31 480 27 477 1.24e-54 190
Msa0406750 MtrunA17_Chr7g0259471 31.111 450 260 10 43 480 52 463 1.50e-53 187
Msa0406750 MtrunA17_Chr8g0376601 34.254 362 214 6 22 379 21 362 5.53e-53 187
Msa0406750 MtrunA17_Chr3g0115741 28.059 474 294 9 31 480 30 480 6.22e-53 186
Msa0406750 MtrunA17_Chr3g0085971 30.986 426 267 7 60 480 75 478 1.18e-52 185
Msa0406750 MtrunA17_Chr3g0078971 28.662 471 293 11 31 479 27 476 1.67e-52 185
Msa0406750 MtrunA17_Chr3g0078991 30.233 473 284 13 31 479 27 477 8.07e-52 183
Msa0406750 MtrunA17_Chr8g0373181 29.011 455 290 8 30 480 50 475 1.34e-51 182
Msa0406750 MtrunA17_Chr4g0048051 28.728 456 281 8 16 447 12 447 3.17e-51 181
Msa0406750 MtrunA17_Chr2g0290181 30.909 385 243 4 1 378 1 369 6.11e-51 182
Msa0406750 MtrunA17_Chr2g0290181 38.095 84 52 0 397 480 463 546 3.47e-11 65.5
Msa0406750 MtrunA17_Chr4g0066581 28.085 470 307 8 13 480 36 476 1.87e-50 179
Msa0406750 MtrunA17_Chr1g0155221 29.792 480 304 9 5 480 28 478 2.45e-50 178
Msa0406750 MtrunA17_Chr7g0273281 29.556 450 285 7 32 480 67 485 6.70e-50 177
Msa0406750 MtrunA17_Chr1g0205691 27.101 476 293 8 33 480 28 477 1.66e-49 177
Msa0406750 MtrunA17_Chr5g0417611 28.684 509 305 14 1 480 1 480 2.96e-49 176
Msa0406750 MtrunA17_Chr1g0205671 27.696 473 297 9 31 480 27 477 5.56e-49 175
Msa0406750 MtrunA17_Chr1g0205681 27.273 473 300 8 31 480 27 478 8.89e-49 174
Msa0406750 MtrunA17_Chr8g0390141 28.842 475 295 10 26 479 26 478 1.55e-48 174
Msa0406750 MtrunA17_Chr2g0303701 33.989 356 208 7 24 373 23 357 2.06e-48 175
Msa0406750 MtrunA17_Chr3g0115751 27.907 473 296 10 31 480 32 482 9.48e-48 172
Msa0406750 MtrunA17_Chr6g0486681 26.984 504 312 14 1 479 6 478 2.34e-47 171
Msa0406750 MtrunA17_Chr6g0486671 26.984 504 312 14 1 479 6 478 2.34e-47 171
Msa0406750 MtrunA17_Chr7g0259221 30.876 434 254 10 55 480 70 465 3.14e-47 170
Msa0406750 MtrunA17_Chr4g0048411 26.939 490 311 9 16 480 12 479 3.60e-47 171
Msa0406750 MtrunA17_Chr5g0437021 28.791 455 276 11 18 447 14 445 4.44e-47 170
Msa0406750 MtrunA17_Chr2g0286721 29.698 431 264 9 55 480 77 473 4.61e-47 169
Msa0406750 MtrunA17_Chr8g0376631 32.047 337 209 4 24 356 23 343 5.79e-47 171
Msa0406750 MtrunA17_Chr3g0115711 26.947 475 297 9 31 480 27 476 7.42e-47 169
Msa0406750 MtrunA17_Chr1g0164871 28.656 506 304 14 1 479 1 476 1.57e-46 169
Msa0406750 MtrunA17_Chr1g0164851 28.854 506 303 13 1 479 1 476 1.76e-46 169
Msa0406750 MtrunA17_Chr8g0390261 27.254 477 300 12 26 479 26 478 2.13e-46 168
Msa0406750 MtrunA17_Chr3g0128171 28.760 379 242 6 75 447 44 400 3.40e-46 166
Msa0406750 MtrunA17_Chr3g0128081 27.140 479 301 10 28 480 23 479 8.39e-46 167
Msa0406750 MtrunA17_Chr4g0065311 28.092 477 290 11 29 480 24 472 1.77e-45 165
Msa0406750 MtrunA17_Chr4g0065324 28.118 473 295 10 29 480 32 480 1.03e-44 163
Msa0406750 MtrunA17_Chr8g0373191 27.753 454 275 9 30 479 42 446 1.14e-44 162
Msa0406750 MtrunA17_Chr3g0119401 27.957 465 289 10 27 480 93 522 1.44e-43 161
Msa0406750 MtrunA17_Chr5g0445601 28.092 477 290 12 29 480 30 478 8.79e-43 158
Msa0406750 MtrunA17_Chr7g0257631 27.557 479 290 12 29 480 64 512 7.41e-42 156
Msa0406750 MtrunA17_Chr3g0078791 26.353 425 268 6 60 480 21 404 6.34e-41 152
Msa0406750 MtrunA17_Chr8g0376611 32.404 287 175 5 77 361 12 281 6.44e-40 150
Msa0406750 MtrunA17_Chr6g0486021 29.698 431 263 9 12 435 34 431 1.20e-39 149
Msa0406750 MtrunA17_Chr3g0121674 31.864 295 180 5 188 480 1 276 1.67e-39 145
Msa0406750 MtrunA17_Chr3g0115731 27.766 479 268 12 31 480 27 456 2.76e-39 148
Msa0406750 MtrunA17_Chr4g0004821 28.381 451 292 8 32 480 41 462 8.60e-37 141
Msa0406750 MtrunA17_Chr3g0144261 39.713 209 116 4 25 228 2 205 1.11e-36 143
Msa0406750 MtrunA17_Chr3g0144261 27.854 219 142 5 271 480 496 707 3.21e-18 87.8
Msa0406750 MtrunA17_Chr2g0290161 32.177 317 163 8 85 397 21 289 3.45e-35 137
Msa0406750 MtrunA17_Chr3g0146061 39.594 197 109 5 38 228 15 207 6.75e-32 129
Msa0406750 MtrunA17_Chr3g0146061 27.982 218 141 4 272 480 507 717 4.14e-18 87.4
Msa0406750 MtrunA17_Chr4g0065351 29.651 344 205 9 145 480 1 315 2.88e-30 120
Msa0406750 MtrunA17_Chr5g0407441 34.328 201 128 4 31 228 8 207 6.88e-29 120
Msa0406750 MtrunA17_Chr5g0407441 26.695 236 155 4 254 480 473 699 4.83e-14 74.7
Msa0406750 MtrunA17_Chr8g0370141 34.975 203 124 5 31 228 8 207 1.75e-27 113
Msa0406750 MtrunA17_Chr5g0404191 29.817 218 144 3 30 246 53 262 4.36e-25 105
Msa0406750 MtrunA17_Chr5g0419321 33.333 183 118 4 49 228 54 235 2.00e-23 103
Msa0406750 MtrunA17_Chr5g0419321 26.786 224 136 4 272 480 515 725 2.54e-15 79.0
Msa0406750 MtrunA17_Chr7g0273261 31.579 190 122 3 291 480 46 227 3.84e-20 90.1
Msa0406750 MtrunA17_Chr5g0434231 30.380 158 84 1 77 234 15 146 2.19e-19 85.1
Msa0406750 MtrunA17_Chr8g0370151 27.751 209 134 4 283 480 136 338 1.17e-16 81.3
Msa0406750 MtrunA17_Chr7g0273271 25.943 212 143 3 9 213 2 206 1.85e-15 75.1
Msa0406750 MtrunA17_Chr2g0319001 24.155 414 263 17 78 478 135 510 3.49e-12 68.6
Msa0406750 MtrunA17_Chr3g0115771 24.706 340 182 15 137 472 7 276 3.93e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0406750 AT3G18830.1 74.573 468 118 1 13 480 22 488 0.0 722
Msa0406750 AT2G16120.1 68.026 466 145 3 18 480 15 479 0.0 649
Msa0406750 AT2G16130.1 68.026 466 145 3 18 480 15 479 0.0 647
Msa0406750 AT4G36670.1 58.085 470 192 2 13 480 3 469 0.0 553
Msa0406750 AT2G18480.1 60.823 462 177 3 20 480 15 473 0.0 539
Msa0406750 AT2G20780.1 50.000 462 213 3 19 480 47 490 2.18e-157 457
Msa0406750 AT2G20780.2 50.118 425 194 3 56 480 26 432 1.75e-141 414
Msa0406750 AT2G43330.1 33.192 473 291 5 14 480 16 469 2.46e-70 232
Msa0406750 AT5G17010.1 30.769 494 298 13 10 480 20 492 4.80e-64 216
Msa0406750 AT5G17010.3 30.769 494 298 13 10 480 20 492 4.80e-64 216
Msa0406750 AT5G17010.4 30.769 494 298 13 10 480 20 492 4.80e-64 216
Msa0406750 AT5G59250.1 31.723 476 290 11 21 480 90 546 1.62e-63 216
Msa0406750 AT3G03090.1 31.276 486 308 9 4 480 24 492 2.45e-60 206
Msa0406750 AT5G27350.1 30.408 490 293 11 1 480 3 454 2.23e-59 202
Msa0406750 AT5G27360.1 29.375 480 300 9 9 480 10 458 6.51e-59 201
Msa0406750 AT5G27360.3 29.375 480 300 9 9 480 58 506 2.27e-58 201
Msa0406750 AT5G16150.2 32.308 455 268 9 33 480 111 532 1.25e-56 197
Msa0406750 AT5G16150.1 32.308 455 268 9 33 480 111 532 1.25e-56 197
Msa0406750 AT5G16150.3 32.308 455 268 9 33 480 111 532 1.25e-56 197
Msa0406750 AT1G50310.1 28.810 479 295 9 26 480 24 480 3.60e-56 195
Msa0406750 AT3G05150.2 30.426 493 284 10 9 480 5 459 4.95e-55 191
Msa0406750 AT3G05150.1 30.426 493 284 10 9 480 5 459 6.45e-55 191
Msa0406750 AT3G05150.3 30.426 493 284 10 9 480 5 459 6.45e-55 191
Msa0406750 AT3G19940.1 28.482 481 293 10 26 480 24 479 1.96e-54 190
Msa0406750 AT1G11260.1 28.931 477 293 10 28 480 25 479 3.79e-54 190
Msa0406750 AT1G75220.1 29.870 462 293 6 22 480 43 476 8.87e-53 185
Msa0406750 AT3G05165.3 28.542 480 302 11 9 480 7 453 6.16e-52 182
Msa0406750 AT3G05165.2 28.542 480 302 11 9 480 7 453 6.16e-52 182
Msa0406750 AT3G05165.1 28.542 480 302 11 9 480 7 453 6.16e-52 182
Msa0406750 AT1G30220.1 33.621 348 211 4 23 366 24 355 8.81e-52 184
Msa0406750 AT1G34580.1 30.882 476 281 13 31 480 28 481 9.31e-52 183
Msa0406750 AT5G26340.1 28.602 472 293 8 31 479 27 477 3.80e-51 182
Msa0406750 AT2G48020.2 28.008 482 314 9 1 480 1 451 1.06e-50 179
Msa0406750 AT2G48020.1 28.008 482 314 9 1 480 1 451 1.06e-50 179
Msa0406750 AT3G05160.1 28.051 467 302 7 18 480 8 444 1.88e-50 178
Msa0406750 AT1G34580.2 32.274 409 250 9 78 480 44 431 2.41e-50 178
Msa0406750 AT1G19450.1 28.788 462 298 7 22 480 44 477 7.10e-50 177
Msa0406750 AT1G08930.1 28.662 471 295 9 19 480 43 481 1.02e-49 177
Msa0406750 AT1G08930.2 28.662 471 295 9 19 480 43 481 1.02e-49 177
Msa0406750 AT5G18840.1 29.449 472 296 7 13 480 30 468 1.09e-49 177
Msa0406750 AT4G21480.1 29.747 474 286 11 31 480 27 477 1.32e-49 177
Msa0406750 AT5G23270.1 28.367 490 284 9 26 480 23 480 5.85e-49 176
Msa0406750 AT1G54730.2 30.787 445 274 10 38 480 43 455 1.83e-48 173
Msa0406750 AT5G27360.2 30.133 375 230 7 107 480 11 354 3.79e-48 170
Msa0406750 AT5G27360.5 30.133 375 230 7 107 480 11 354 3.79e-48 170
Msa0406750 AT3G05160.3 28.774 424 272 6 57 480 2 395 3.31e-47 168
Msa0406750 AT3G05160.2 28.774 424 272 6 57 480 2 395 3.31e-47 168
Msa0406750 AT3G19930.1 26.096 502 322 10 1 479 1 476 4.28e-47 171
Msa0406750 AT3G19930.2 26.096 502 322 10 1 479 1 476 4.28e-47 171
Msa0406750 AT5G27360.4 28.538 424 265 8 9 424 10 403 1.72e-46 167
Msa0406750 AT5G61520.1 29.400 483 287 13 26 479 23 480 2.18e-46 169
Msa0406750 AT1G05030.1 29.175 497 293 11 5 480 49 507 1.36e-45 167
Msa0406750 AT3G05165.4 28.605 430 268 10 9 432 7 403 2.35e-45 165
Msa0406750 AT3G05165.5 28.605 430 268 10 9 432 7 403 2.35e-45 165
Msa0406750 AT3G05165.6 28.261 460 289 11 9 460 7 433 4.76e-45 165
Msa0406750 AT2G35740.1 32.754 345 213 7 31 370 30 360 6.58e-45 166
Msa0406750 AT2G35740.1 31.356 118 74 1 370 480 432 549 4.03e-12 68.9
Msa0406750 AT1G77210.2 27.833 503 314 11 1 479 1 478 6.96e-45 164
Msa0406750 AT1G77210.1 27.833 503 314 11 1 479 1 478 6.96e-45 164
Msa0406750 AT1G08890.1 28.662 471 298 9 16 480 12 450 8.81e-45 163
Msa0406750 AT1G67300.2 31.323 431 259 10 9 435 38 435 1.15e-44 164
Msa0406750 AT5G26250.1 28.421 475 298 9 26 480 21 473 1.58e-44 163
Msa0406750 AT3G05400.1 26.360 478 320 10 3 479 2 448 1.60e-44 162
Msa0406750 AT1G54730.3 30.807 409 250 9 38 444 43 420 2.66e-44 161
Msa0406750 AT5G61520.2 30.617 405 254 9 78 479 52 432 5.37e-44 161
Msa0406750 AT3G05155.1 25.572 481 324 7 1 480 1 448 1.98e-43 159
Msa0406750 AT1G67300.6 31.019 432 260 11 9 436 38 435 6.46e-43 158
Msa0406750 AT1G67300.7 31.019 432 260 11 9 436 38 435 6.46e-43 158
Msa0406750 AT1G50310.2 30.145 345 217 7 139 480 14 337 1.03e-42 155
Msa0406750 AT1G07340.1 28.062 449 263 11 28 446 24 442 1.59e-42 158
Msa0406750 AT3G05960.1 27.959 490 299 12 17 480 11 472 2.08e-42 157
Msa0406750 AT1G67300.4 31.190 420 251 11 9 424 38 423 2.24e-42 156
Msa0406750 AT1G67300.5 31.190 420 251 11 9 424 38 423 2.24e-42 156
Msa0406750 AT4G02050.2 26.446 484 312 9 18 480 18 478 3.51e-42 157
Msa0406750 AT4G02050.1 26.446 484 312 9 18 480 18 478 3.51e-42 157
Msa0406750 AT4G16480.2 29.067 375 247 7 1 370 1 361 4.33e-42 158
Msa0406750 AT4G16480.2 39.286 84 51 0 397 480 467 550 1.78e-12 70.1
Msa0406750 AT4G16480.3 29.067 375 247 7 1 370 1 361 4.33e-42 158
Msa0406750 AT4G16480.3 39.286 84 51 0 397 480 467 550 1.78e-12 70.1
Msa0406750 AT4G16480.1 29.067 375 247 7 1 370 1 361 4.33e-42 158
Msa0406750 AT4G16480.1 39.286 84 51 0 397 480 467 550 1.78e-12 70.1
Msa0406750 AT1G67300.1 30.858 431 260 11 9 435 38 434 4.52e-42 156
Msa0406750 AT1G67300.3 30.858 431 260 11 9 435 38 434 4.52e-42 156
Msa0406750 AT1G08900.3 27.991 468 292 11 19 480 12 440 5.08e-41 153
Msa0406750 AT4G04760.1 26.696 457 292 9 32 480 36 457 8.56e-41 152
Msa0406750 AT4G04750.1 25.874 429 284 7 55 480 64 461 1.06e-40 152
Msa0406750 AT4G04750.2 25.874 429 284 7 55 480 64 461 1.06e-40 152
Msa0406750 AT1G08900.1 28.118 473 293 11 19 480 12 448 1.33e-40 152
Msa0406750 AT1G08900.2 28.118 473 293 11 19 480 12 448 1.33e-40 152
Msa0406750 AT4G04750.3 25.874 429 284 7 55 480 108 505 1.76e-40 152
Msa0406750 AT3G05400.2 25.732 478 303 11 3 479 2 428 1.97e-40 151
Msa0406750 AT4G04760.3 26.852 432 273 9 57 480 2 398 2.03e-40 150
Msa0406750 AT1G08900.5 28.704 432 266 10 55 480 11 406 3.72e-40 150
Msa0406750 AT1G05030.2 29.083 447 266 10 47 480 47 455 2.51e-39 148
Msa0406750 AT1G54730.5 28.539 445 263 10 38 480 43 434 5.32e-39 147
Msa0406750 AT1G79820.2 29.956 454 281 11 32 480 59 480 2.35e-38 146
Msa0406750 AT1G79820.1 29.956 454 281 11 32 480 59 480 2.35e-38 146
Msa0406750 AT3G51490.2 41.038 212 111 6 31 234 8 213 1.64e-37 146
Msa0406750 AT3G51490.2 27.126 247 161 4 243 480 474 710 2.18e-19 92.0
Msa0406750 AT3G51490.1 41.038 212 111 6 31 234 8 213 1.71e-37 146
Msa0406750 AT3G51490.1 26.033 242 162 6 243 480 474 702 4.73e-15 78.2
Msa0406750 AT1G54730.9 29.659 381 235 9 38 416 43 392 2.31e-37 142
Msa0406750 AT1G54730.7 29.659 381 235 9 38 416 43 392 2.31e-37 142
Msa0406750 AT5G17010.2 25.845 503 261 16 5 480 12 429 4.43e-37 142
Msa0406750 AT1G79820.4 30.976 410 246 11 32 436 59 436 1.16e-36 140
Msa0406750 AT1G20840.2 39.352 216 119 5 25 234 2 211 2.55e-36 143
Msa0406750 AT1G20840.2 29.952 207 132 2 283 480 507 709 1.02e-14 77.4
Msa0406750 AT1G20840.1 39.352 216 119 5 25 234 2 211 2.55e-36 143
Msa0406750 AT1G20840.1 29.952 207 132 2 283 480 507 709 1.02e-14 77.4
Msa0406750 AT2G48020.4 27.820 399 253 9 1 393 1 370 1.59e-35 136
Msa0406750 AT1G54730.4 28.362 409 239 9 38 444 43 399 6.43e-35 135
Msa0406750 AT1G08920.1 25.780 481 318 12 3 480 11 455 2.20e-34 134
Msa0406750 AT4G04760.2 25.386 453 300 9 32 480 36 454 4.04e-34 134
Msa0406750 AT1G08900.4 27.689 437 270 10 19 444 12 413 7.62e-34 132
Msa0406750 AT4G35300.9 38.916 203 114 5 38 234 15 213 2.09e-33 134
Msa0406750 AT4G35300.9 28.761 226 145 4 264 480 488 706 1.39e-17 86.3
Msa0406750 AT4G35300.2 38.916 203 114 5 38 234 15 213 2.09e-33 134
Msa0406750 AT4G35300.2 28.761 226 145 4 264 480 488 706 1.39e-17 86.3
Msa0406750 AT4G35300.3 38.916 203 114 5 38 234 15 213 2.09e-33 134
Msa0406750 AT4G35300.3 28.761 226 145 4 264 480 488 706 1.39e-17 86.3
Msa0406750 AT4G35300.4 38.916 203 114 5 38 234 15 213 2.18e-33 134
Msa0406750 AT4G35300.4 28.761 226 145 4 264 480 498 716 1.39e-17 86.3
Msa0406750 AT4G35300.8 38.916 203 114 5 38 234 15 213 2.18e-33 134
Msa0406750 AT4G35300.8 28.761 226 145 4 264 480 498 716 1.39e-17 86.3
Msa0406750 AT4G35300.6 38.916 203 114 5 38 234 15 213 2.18e-33 134
Msa0406750 AT4G35300.6 28.761 226 145 4 264 480 498 716 1.39e-17 86.3
Msa0406750 AT4G35300.11 38.916 203 114 5 38 234 15 213 2.18e-33 134
Msa0406750 AT4G35300.11 28.761 226 145 4 264 480 498 716 1.39e-17 86.3
Msa0406750 AT4G35300.1 38.916 203 114 5 38 234 15 213 2.18e-33 134
Msa0406750 AT4G35300.1 28.761 226 145 4 264 480 498 716 1.39e-17 86.3
Msa0406750 AT4G35300.10 38.916 203 114 5 38 234 15 213 2.18e-33 134
Msa0406750 AT4G35300.10 28.761 226 145 4 264 480 498 716 1.39e-17 86.3
Msa0406750 AT4G35300.7 38.916 203 114 5 38 234 15 213 2.18e-33 134
Msa0406750 AT4G35300.7 28.761 226 145 4 264 480 498 716 1.39e-17 86.3
Msa0406750 AT1G08920.2 25.410 488 318 13 3 480 11 462 5.07e-32 128
Msa0406750 AT1G77210.3 28.367 349 222 7 135 479 5 329 6.76e-32 125
Msa0406750 AT2G48020.3 26.816 358 231 7 1 356 1 329 1.15e-31 125
Msa0406750 AT1G54730.11 29.154 319 198 7 38 356 43 333 2.07e-30 121
Msa0406750 AT3G51490.3 42.169 166 86 4 76 234 1 163 8.03e-30 123
Msa0406750 AT3G51490.3 27.126 247 161 4 243 480 424 660 2.55e-19 91.7
Msa0406750 AT1G08920.3 26.559 433 277 12 3 432 11 405 3.19e-29 120
Msa0406750 AT3G20460.1 24.374 439 302 7 42 480 68 476 6.92e-29 119
Msa0406750 AT3G05155.2 25.210 357 234 6 1 356 1 325 1.57e-28 115
Msa0406750 AT1G54730.8 27.034 381 224 9 38 416 43 371 4.38e-28 115
Msa0406750 AT1G54730.10 28.269 283 179 5 38 320 43 301 1.57e-25 107
Msa0406750 AT1G54730.6 28.269 283 179 5 38 320 43 301 1.57e-25 107
Msa0406750 AT4G35300.5 28.761 226 145 4 264 480 301 519 3.16e-17 84.7
Msa0406750 AT1G79820.3 29.876 241 141 6 32 261 59 282 1.53e-15 79.3
Msa0406750 AT3G13050.2 25.183 409 246 9 60 435 56 437 5.51e-12 68.2
Msa0406750 AT3G13050.4 25.183 409 246 9 60 435 56 437 5.51e-12 68.2
Msa0406750 AT3G13050.1 25.183 409 246 9 60 435 56 437 5.51e-12 68.2
Msa0406750 AT3G13050.3 25.183 409 246 9 60 435 56 437 5.51e-12 68.2

Find 127 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGATACATTTCAAACTA+TGG 0.226747 3_2:-43523133 Msa0406750:CDS
AAAGCAAACTTGTTTGATTC+AGG 0.250718 3_2:+43524360 None:intergenic
TGCTTTCGCCTGTGCTATAT+TGG 0.254699 3_2:-43524343 Msa0406750:CDS
ATATAACTAATTAAGAATTA+TGG 0.259549 3_2:-43524439 Msa0406750:exon
CTAAGCTTTCACTTAGATTA+GGG 0.278994 3_2:-43523105 Msa0406750:CDS
CGCGCTCAAGGTGCGTCTGC+CGG 0.291022 3_2:-43522371 Msa0406750:CDS
TCTAAGCTTTCACTTAGATT+AGG 0.294624 3_2:-43523106 Msa0406750:CDS
GCGCTCAAGGTGCGTCTGCC+GGG 0.303838 3_2:-43522370 Msa0406750:CDS
CTTACCATAACCAAGTAAAA+TGG 0.325788 3_2:+43524308 None:intergenic
GATACTTCGGCGGTGTAGAC+AGG 0.337280 3_2:+43523563 None:intergenic
TCAGCCTCTTTGTGCAGTAC+TGG 0.341853 3_2:-43524491 Msa0406750:five_prime_UTR
GGCGAGGCAGGAACCTATTA+AGG 0.343873 3_2:+43523748 None:intergenic
TTGGTGCGGGTCCCATTACT+TGG 0.348252 3_2:-43522427 Msa0406750:CDS
GGAGGGGCATTCTTTCTGTT+TGG 0.349839 3_2:-43522275 Msa0406750:CDS
CGTTACACCATCGTCCTTGC+CGG 0.362331 3_2:-43523698 Msa0406750:CDS
GCTCGTTTAATCGCTGGTAT+TGG 0.376432 3_2:-43523611 Msa0406750:CDS
CACATTGTTATTGCTGCTCT+TGG 0.378621 3_2:-43522782 Msa0406750:CDS
TGCCTACGAGGATTTCGATT+TGG 0.383276 3_2:+43523786 None:intergenic
GAGGAAGCCGCGAGAGGAAG+CGG 0.387203 3_2:+43523538 None:intergenic
GAACTATAAACCCAAGTAAT+GGG 0.390277 3_2:+43522416 None:intergenic
GGGGCATTCTTTCTGTTTGG+TGG 0.393622 3_2:-43522272 Msa0406750:CDS
CTTCGCAGGCGCACTCCTCA+TGG 0.399955 3_2:-43523666 Msa0406750:CDS
TTGATAGATAAATAGATAGA+TGG 0.403638 3_2:+43524631 None:intergenic
ATCAATGGAGGGATATTACT+TGG 0.404461 3_2:-43523151 Msa0406750:CDS
AGGAAGCCGCGAGAGGAAGC+GGG 0.415190 3_2:+43523539 None:intergenic
AATTAGTTATATAACACAAT+TGG 0.420587 3_2:+43524450 None:intergenic
GCCGGCTCCATCTTCTTCGC+AGG 0.427444 3_2:-43523680 Msa0406750:CDS
ACTAATACTATGCAGATATC+GGG 0.442071 3_2:-43523862 Msa0406750:intron
ATGTTTGCTCGTTTAATCGC+TGG 0.445381 3_2:-43523617 Msa0406750:CDS
TGGAGAGTGATGCTCGGAAT+AGG 0.449764 3_2:-43523082 Msa0406750:CDS
AGGTGCGTCTGCCGGGGTGG+TGG 0.451923 3_2:-43522363 Msa0406750:CDS
AGTGAAATCAAAGCCGCGGC+TGG 0.452500 3_2:-43522914 Msa0406750:CDS
AAACATGAGAAAGGCATAGT+TGG 0.455975 3_2:+43523634 None:intergenic
TTTGGACATCAGATAGTTTG+AGG 0.465698 3_2:+43523804 None:intergenic
AGATGTTCGACCGGCGAGGC+AGG 0.468368 3_2:+43523736 None:intergenic
CACAGTAGCTCAGAAGTCTC+TGG 0.470099 3_2:-43524406 Msa0406750:CDS
TATAATGAGAATTAGACAAC+AGG 0.484434 3_2:+43524607 None:intergenic
AGCCTCTTGTTCTGAGTCAG+AGG 0.486715 3_2:+43522949 None:intergenic
CAGATATCGGGGTGATGAGT+GGG 0.486997 3_2:-43523850 Msa0406750:CDS
TGCAACTGTAGCCGTTGGAT+TGG 0.493319 3_2:-43522657 Msa0406750:CDS
AGGAACCTATTAAGGAGAAA+AGG 0.494956 3_2:+43523756 None:intergenic
AGAACTATAAACCCAAGTAA+TGG 0.497721 3_2:+43522415 None:intergenic
GTGGAATTGCAGCTTGTGGA+TGG 0.498006 3_2:-43522253 Msa0406750:CDS
TTCGCAGGCGCACTCCTCAT+GGG 0.498304 3_2:-43523665 Msa0406750:CDS
ACCAAGTAAAATGGAAGTCA+TGG 0.500166 3_2:+43524317 None:intergenic
CAGCCTCTTTGTGCAGTACT+GGG 0.502203 3_2:-43524490 Msa0406750:five_prime_UTR
AACATGAGAAAGGCATAGTT+GGG 0.505392 3_2:+43523635 None:intergenic
TTAATAGGTTCCTGCCTCGC+CGG 0.507151 3_2:-43523746 Msa0406750:CDS
TCGCCGGTCGAACATCTGAT+TGG 0.507155 3_2:-43523730 Msa0406750:CDS
CCGTTATTGTTATCTAGTGT+TGG 0.513856 3_2:-43522578 Msa0406750:CDS
CCGTTGAGGCTACGCGCTCA+AGG 0.514907 3_2:-43522383 Msa0406750:CDS
GGTCGAACATCTGATTGGAT+TGG 0.518971 3_2:-43523725 Msa0406750:CDS
GTTATCTAGTGTTGGTGGAA+TGG 0.519413 3_2:-43522570 Msa0406750:CDS
GAGTGCGCCTGCGAAGAAGA+TGG 0.523383 3_2:+43523673 None:intergenic
ATACTTCGGCGGTGTAGACA+GGG 0.523956 3_2:+43523564 None:intergenic
CGCTCAAGGTGCGTCTGCCG+GGG 0.527356 3_2:-43522369 Msa0406750:CDS
CCTTCAGTAATCTTAGCCGT+TGG 0.532934 3_2:-43523052 Msa0406750:CDS
TCTGATAAGATAAGCATTGG+AGG 0.540641 3_2:-43522293 Msa0406750:CDS
TTACTTGCAACTGTAGCCGT+TGG 0.541507 3_2:-43522662 Msa0406750:CDS
TTTGGTGGAATTGCAGCTTG+TGG 0.545028 3_2:-43522257 Msa0406750:CDS
AGTAGCTACCAAGATGAAAA+CGG 0.545966 3_2:+43522628 None:intergenic
AACCTCTGACTCAGAACAAG+AGG 0.549748 3_2:-43522951 Msa0406750:CDS
CCTTGAGCGCGTAGCCTCAA+CGG 0.552064 3_2:+43522383 None:intergenic
AGCTTTCACTTAGATTAGGG+TGG 0.552323 3_2:-43523102 Msa0406750:CDS
TTATATCAGGTATTCATCAA+TGG 0.554162 3_2:-43523166 Msa0406750:intron
TTAATCGCTGGTATTGGCAT+CGG 0.554945 3_2:-43523605 Msa0406750:CDS
CGAAGAAGATGGAGCCGGCA+AGG 0.554949 3_2:+43523684 None:intergenic
CCTCGTTGGCTTGTCATGAA+AGG 0.556556 3_2:-43523007 Msa0406750:CDS
TAAACGAGCAAACATGAGAA+AGG 0.559224 3_2:+43523625 None:intergenic
CTAATTAAGAATTATGGCGG+AGG 0.559276 3_2:-43524433 Msa0406750:exon
GCAGATATCGGGGTGATGAG+TGG 0.560198 3_2:-43523851 Msa0406750:intron
AAAGAAAACCAACGAGAGAG+AGG 0.561064 3_2:-43522855 Msa0406750:CDS
ACAAGCCAACGAGGTGACTC+AGG 0.565438 3_2:+43523016 None:intergenic
TGGTGCGGGTCCCATTACTT+GGG 0.568305 3_2:-43522426 Msa0406750:CDS
TTATTGTTATCTAGTGTTGG+TGG 0.568349 3_2:-43522575 Msa0406750:CDS
TTGTCTGATAAGATAAGCAT+TGG 0.568576 3_2:-43522296 Msa0406750:CDS
CATGGAAGCCAATATAGCAC+AGG 0.569738 3_2:+43524335 None:intergenic
TCAAGGTGCGTCTGCCGGGG+TGG 0.573963 3_2:-43522366 Msa0406750:CDS
GTACCTCAGGGAAGGAGGTG+AGG 0.576047 3_2:+43523519 None:intergenic
TATCAGGTATTCATCAATGG+AGG 0.577771 3_2:-43523163 Msa0406750:intron
ATGTGACGCACTGCGCGTGT+AGG 0.579563 3_2:+43522800 None:intergenic
AGCTGGGTTAGAATCTGATA+CGG 0.580061 3_2:-43522690 Msa0406750:CDS
CGGCAAGGACGATGGTGTAA+CGG 0.587162 3_2:+43523699 None:intergenic
CCAACACTAGATAACAATAA+CGG 0.588306 3_2:+43522578 None:intergenic
CTTGTCATGAAAGGAAGACT+CGG 0.588412 3_2:-43522998 Msa0406750:CDS
CTGATAAGATAAGCATTGGA+GGG 0.595189 3_2:-43522292 Msa0406750:CDS
AGTAGTACCCTCTCTCTCGT+TGG 0.595990 3_2:+43522847 None:intergenic
TAATTAAGAATTATGGCGGA+GGG 0.596676 3_2:-43524432 Msa0406750:exon
GGAAGCCGCGAGAGGAAGCG+GGG 0.598636 3_2:+43523540 None:intergenic
CCAACGGCTAAGATTACTGA+AGG 0.599217 3_2:+43523052 None:intergenic
GATGGAGCCGGCAAGGACGA+TGG 0.602445 3_2:+43523691 None:intergenic
GCCTGCGAAGAAGATGGAGC+CGG 0.602954 3_2:+43523679 None:intergenic
AATCCAATCAGATGTTCGAC+CGG 0.603969 3_2:+43523727 None:intergenic
CACTCTATTCACCACCACCC+CGG 0.607091 3_2:+43522352 None:intergenic
CCATGCCTGAGTCACCTCGT+TGG 0.608489 3_2:-43523021 Msa0406750:CDS
GTGAGACAAATGTGGGCTGT+TGG 0.608613 3_2:-43522494 Msa0406750:CDS
GATTTCGTTGTTAACTCTAG+CGG 0.609238 3_2:-43522546 Msa0406750:CDS
TTCGCGCGTGAGACAAATGT+GGG 0.610602 3_2:-43522501 Msa0406750:CDS
GGAGGTGAGGAAGCCGCGAG+AGG 0.613478 3_2:+43523532 None:intergenic
ATCAGGTATTCATCAATGGA+GGG 0.614389 3_2:-43523162 Msa0406750:intron
ATTAGGTACCTCAGGGAAGG+AGG 0.622041 3_2:+43523514 None:intergenic
ATTCGCGCGTGAGACAAATG+TGG 0.623227 3_2:-43522502 Msa0406750:CDS
GAAGCCGCGAGAGGAAGCGG+GGG 0.624351 3_2:+43523541 None:intergenic
AAGAAAACCAACGAGAGAGA+GGG 0.624435 3_2:-43522854 Msa0406750:CDS
TGATAAGATAAGCATTGGAG+GGG 0.624576 3_2:-43522291 Msa0406750:CDS
ACTATTAGGTACCTCAGGGA+AGG 0.631135 3_2:+43523511 None:intergenic
TATCCCAGTACTGCACAAAG+AGG 0.633014 3_2:+43524487 None:intergenic
CCAACGAGGTGACTCAGGCA+TGG 0.638421 3_2:+43523021 None:intergenic
TGGTGAATAGAGTGACAAGT+GGG 0.639776 3_2:-43522343 Msa0406750:CDS
TAACTAATTAAGAATTATGG+CGG 0.647668 3_2:-43524436 Msa0406750:exon
TTAGGGTGGAGAGTGATGCT+CGG 0.650573 3_2:-43523088 Msa0406750:CDS
AGGCATGGCTAGTACTCCAA+CGG 0.667703 3_2:+43523036 None:intergenic
AATCAGATGTTCGACCGGCG+AGG 0.670831 3_2:+43523732 None:intergenic
CTAATACTATGCAGATATCG+GGG 0.671151 3_2:-43523861 Msa0406750:intron
AGATATCGGGGTGATGAGTG+GGG 0.672451 3_2:-43523849 Msa0406750:CDS
TACTTCGGCGGTGTAGACAG+GGG 0.679271 3_2:+43523565 None:intergenic
ACTCAGTGAAATCAAAGCCG+CGG 0.688137 3_2:-43522918 Msa0406750:CDS
CCTTTCATGACAAGCCAACG+AGG 0.689296 3_2:+43523007 None:intergenic
CTTCCTCACCTCCTTCCCTG+AGG 0.690710 3_2:-43523522 Msa0406750:intron
AGTAGCTCAGAAGTCTCTGG+AGG 0.691173 3_2:-43524403 Msa0406750:CDS
GTGGTGAATAGAGTGACAAG+TGG 0.700678 3_2:-43522344 Msa0406750:CDS
GTCCAAATCGAAATCCTCGT+AGG 0.700692 3_2:-43523788 Msa0406750:CDS
AATGCTTATCTTATCAGACA+AGG 0.701708 3_2:+43522298 None:intergenic
AGAGAGAGGGTACTACTGTG+TGG 0.704707 3_2:-43522841 Msa0406750:CDS
CACGCGCGAATGATCAACAA+CGG 0.712695 3_2:+43522514 None:intergenic
AAAGGTTGATGATGCCTACG+AGG 0.714277 3_2:+43523774 None:intergenic
AGTTGGGAGAGAATCCCATG+AGG 0.800300 3_2:+43523651 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAACTAATTAAGAATTA+TGG - chr3_2:43522415-43522434 Msa0406750:CDS 10.0%
!!! TGAATTGTTTTTTTATAATA+AGG + chr3_2:43523391-43523410 None:intergenic 10.0%
!! ATATAACTAATTAAGAATTA+TGG - chr3_2:43522415-43522434 Msa0406750:CDS 10.0%
!!! TGAATTGTTTTTTTATAATA+AGG + chr3_2:43523391-43523410 None:intergenic 10.0%
!! AATTAGTTATATAACACAAT+TGG + chr3_2:43522407-43522426 None:intergenic 15.0%
!!! TAATAAATCACAATTTTCAT+TGG - chr3_2:43522623-43522642 Msa0406750:CDS 15.0%
!! TATATGAAGAAATTAATCTA+GGG + chr3_2:43522682-43522701 None:intergenic 15.0%
!!! TTTTTATAATAAGGATAAGA+GGG + chr3_2:43523382-43523401 None:intergenic 15.0%
!!! TTTTTTATAATAAGGATAAG+AGG + chr3_2:43523383-43523402 None:intergenic 15.0%
!! AATTAGTTATATAACACAAT+TGG + chr3_2:43522407-43522426 None:intergenic 15.0%
!!! TAATAAATCACAATTTTCAT+TGG - chr3_2:43522623-43522642 Msa0406750:CDS 15.0%
!! TATATGAAGAAATTAATCTA+GGG + chr3_2:43522682-43522701 None:intergenic 15.0%
!!! TTTTTATAATAAGGATAAGA+GGG + chr3_2:43523382-43523401 None:intergenic 15.0%
!!! TTTTTTATAATAAGGATAAG+AGG + chr3_2:43523383-43523402 None:intergenic 15.0%
!! TTGATAGATAAATAGATAGA+TGG + chr3_2:43522226-43522245 None:intergenic 20.0%
!! TAACTAATTAAGAATTATGG+CGG - chr3_2:43522418-43522437 Msa0406750:CDS 20.0%
!! CTATATGAAGAAATTAATCT+AGG + chr3_2:43522683-43522702 None:intergenic 20.0%
!! TAAATGCATATTTGAATTGA+CGG - chr3_2:43522757-43522776 Msa0406750:CDS 20.0%
!!! GAGTTTAACAACATTAATTT+TGG - chr3_2:43522781-43522800 Msa0406750:CDS 20.0%
!! GAGTACTATATATTACTATT+AGG + chr3_2:43523360-43523379 None:intergenic 20.0%
!! TTGATAGATAAATAGATAGA+TGG + chr3_2:43522226-43522245 None:intergenic 20.0%
!! TAACTAATTAAGAATTATGG+CGG - chr3_2:43522418-43522437 Msa0406750:CDS 20.0%
!! CTATATGAAGAAATTAATCT+AGG + chr3_2:43522683-43522702 None:intergenic 20.0%
!! TAAATGCATATTTGAATTGA+CGG - chr3_2:43522757-43522776 Msa0406750:CDS 20.0%
!!! GAGTTTAACAACATTAATTT+TGG - chr3_2:43522781-43522800 Msa0406750:CDS 20.0%
!! GAGTACTATATATTACTATT+AGG + chr3_2:43523360-43523379 None:intergenic 20.0%
! TATAATGAGAATTAGACAAC+AGG + chr3_2:43522250-43522269 None:intergenic 25.0%
! ATGTATCAATATGTATAGAG+TGG + chr3_2:43522596-43522615 None:intergenic 25.0%
! ATTAGAGTTCAACAAAGTTA+CGG - chr3_2:43522823-43522842 Msa0406750:CDS 25.0%
! AATATACACTAGATAGTACA+TGG - chr3_2:43522915-43522934 Msa0406750:CDS 25.0%
! TACTAATACTATGCAGATAT+CGG - chr3_2:43522991-43523010 Msa0406750:CDS 25.0%
! TTATATCAGGTATTCATCAA+TGG - chr3_2:43523688-43523707 Msa0406750:CDS 25.0%
! ATAAATAGATAGATGGAGTT+TGG + chr3_2:43522219-43522238 None:intergenic 25.0%
! TATAATGAGAATTAGACAAC+AGG + chr3_2:43522250-43522269 None:intergenic 25.0%
! ATGTATCAATATGTATAGAG+TGG + chr3_2:43522596-43522615 None:intergenic 25.0%
! ATTAGAGTTCAACAAAGTTA+CGG - chr3_2:43522823-43522842 Msa0406750:CDS 25.0%
! AATATACACTAGATAGTACA+TGG - chr3_2:43522915-43522934 Msa0406750:CDS 25.0%
! TACTAATACTATGCAGATAT+CGG - chr3_2:43522991-43523010 Msa0406750:CDS 25.0%
! TTATATCAGGTATTCATCAA+TGG - chr3_2:43523688-43523707 Msa0406750:CDS 25.0%
! TAATTAAGAATTATGGCGGA+GGG - chr3_2:43522422-43522441 Msa0406750:CDS 30.0%
!! TTTGATTCAGGTTTCTTTTG+AGG + chr3_2:43522485-43522504 None:intergenic 30.0%
! AAAGCAAACTTGTTTGATTC+AGG + chr3_2:43522497-43522516 None:intergenic 30.0%
! ACTTCCATTTTACTTGGTTA+TGG - chr3_2:43522542-43522561 Msa0406750:CDS 30.0%
CTTACCATAACCAAGTAAAA+TGG + chr3_2:43522549-43522568 None:intergenic 30.0%
! GAAGAAATTAATCTAGGGTT+GGG + chr3_2:43522677-43522696 None:intergenic 30.0%
! TGAAGAAATTAATCTAGGGT+TGG + chr3_2:43522678-43522697 None:intergenic 30.0%
ATAATAGTAGTTTCCCAAGA+GGG + chr3_2:43522726-43522745 None:intergenic 30.0%
AATAATAGTAGTTTCCCAAG+AGG + chr3_2:43522727-43522746 None:intergenic 30.0%
ACTAATACTATGCAGATATC+GGG - chr3_2:43522992-43523011 Msa0406750:CDS 30.0%
! ATCAACCTTTTCTCCTTAAT+AGG - chr3_2:43523093-43523112 Msa0406750:CDS 30.0%
TATTACTATTAGGTACCTCA+GGG + chr3_2:43523350-43523369 None:intergenic 30.0%
ATATTACTATTAGGTACCTC+AGG + chr3_2:43523351-43523370 None:intergenic 30.0%
!!! TCACTTTTTAACTTCTTGTG+TGG - chr3_2:43523416-43523435 Msa0406750:intron 30.0%
TTACTACTAATGCATTAGCT+AGG + chr3_2:43523620-43523639 None:intergenic 30.0%
ATGAATACCTGATATAACAC+AGG + chr3_2:43523685-43523704 None:intergenic 30.0%
CTTGGATACATTTCAAACTA+TGG - chr3_2:43523721-43523740 Msa0406750:CDS 30.0%
TCTAAGCTTTCACTTAGATT+AGG - chr3_2:43523748-43523767 Msa0406750:CDS 30.0%
CTAAGCTTTCACTTAGATTA+GGG - chr3_2:43523749-43523768 Msa0406750:CDS 30.0%
!!! TGGTATTCACTTTTTTCAAC+AGG - chr3_2:43524092-43524111 Msa0406750:intron 30.0%
!!! TAGCTACTTTTTTGTTGGAT+CGG - chr3_2:43524241-43524260 Msa0406750:intron 30.0%
CCAACACTAGATAACAATAA+CGG + chr3_2:43524279-43524298 None:intergenic 30.0%
! TTATTGTTATCTAGTGTTGG+TGG - chr3_2:43524279-43524298 Msa0406750:intron 30.0%
GAACTATAAACCCAAGTAAT+GGG + chr3_2:43524441-43524460 None:intergenic 30.0%
AGAACTATAAACCCAAGTAA+TGG + chr3_2:43524442-43524461 None:intergenic 30.0%
AATGCTTATCTTATCAGACA+AGG + chr3_2:43524559-43524578 None:intergenic 30.0%
TTGTCTGATAAGATAAGCAT+TGG - chr3_2:43524558-43524577 Msa0406750:five_prime_UTR 30.0%
! TAATTAAGAATTATGGCGGA+GGG - chr3_2:43522422-43522441 Msa0406750:CDS 30.0%
!! TTTGATTCAGGTTTCTTTTG+AGG + chr3_2:43522485-43522504 None:intergenic 30.0%
! AAAGCAAACTTGTTTGATTC+AGG + chr3_2:43522497-43522516 None:intergenic 30.0%
! ACTTCCATTTTACTTGGTTA+TGG - chr3_2:43522542-43522561 Msa0406750:CDS 30.0%
CTTACCATAACCAAGTAAAA+TGG + chr3_2:43522549-43522568 None:intergenic 30.0%
! GAAGAAATTAATCTAGGGTT+GGG + chr3_2:43522677-43522696 None:intergenic 30.0%
! TGAAGAAATTAATCTAGGGT+TGG + chr3_2:43522678-43522697 None:intergenic 30.0%
ATAATAGTAGTTTCCCAAGA+GGG + chr3_2:43522726-43522745 None:intergenic 30.0%
AATAATAGTAGTTTCCCAAG+AGG + chr3_2:43522727-43522746 None:intergenic 30.0%
ACTAATACTATGCAGATATC+GGG - chr3_2:43522992-43523011 Msa0406750:CDS 30.0%
! ATCAACCTTTTCTCCTTAAT+AGG - chr3_2:43523093-43523112 Msa0406750:CDS 30.0%
TATTACTATTAGGTACCTCA+GGG + chr3_2:43523350-43523369 None:intergenic 30.0%
ATATTACTATTAGGTACCTC+AGG + chr3_2:43523351-43523370 None:intergenic 30.0%
!!! TCACTTTTTAACTTCTTGTG+TGG - chr3_2:43523416-43523435 Msa0406750:intron 30.0%
TTACTACTAATGCATTAGCT+AGG + chr3_2:43523620-43523639 None:intergenic 30.0%
ATGAATACCTGATATAACAC+AGG + chr3_2:43523685-43523704 None:intergenic 30.0%
CTTGGATACATTTCAAACTA+TGG - chr3_2:43523721-43523740 Msa0406750:CDS 30.0%
TCTAAGCTTTCACTTAGATT+AGG - chr3_2:43523748-43523767 Msa0406750:CDS 30.0%
CTAAGCTTTCACTTAGATTA+GGG - chr3_2:43523749-43523768 Msa0406750:CDS 30.0%
!!! TGGTATTCACTTTTTTCAAC+AGG - chr3_2:43524092-43524111 Msa0406750:intron 30.0%
!!! TAGCTACTTTTTTGTTGGAT+CGG - chr3_2:43524241-43524260 Msa0406750:intron 30.0%
CCAACACTAGATAACAATAA+CGG + chr3_2:43524279-43524298 None:intergenic 30.0%
! TTATTGTTATCTAGTGTTGG+TGG - chr3_2:43524279-43524298 Msa0406750:intron 30.0%
GAACTATAAACCCAAGTAAT+GGG + chr3_2:43524441-43524460 None:intergenic 30.0%
AGAACTATAAACCCAAGTAA+TGG + chr3_2:43524442-43524461 None:intergenic 30.0%
AATGCTTATCTTATCAGACA+AGG + chr3_2:43524559-43524578 None:intergenic 30.0%
TTGTCTGATAAGATAAGCAT+TGG - chr3_2:43524558-43524577 Msa0406750:five_prime_UTR 30.0%
CTAATTAAGAATTATGGCGG+AGG - chr3_2:43522421-43522440 Msa0406750:CDS 35.0%
! TCCATGACTTCCATTTTACT+TGG - chr3_2:43522536-43522555 Msa0406750:CDS 35.0%
ACCAAGTAAAATGGAAGTCA+TGG + chr3_2:43522540-43522559 None:intergenic 35.0%
! AATTAATCTAGGGTTGGGTT+TGG + chr3_2:43522672-43522691 None:intergenic 35.0%
ACATAAGTTTCATTCCCTCT+TGG - chr3_2:43522709-43522728 Msa0406750:CDS 35.0%
CATAAGTTTCATTCCCTCTT+GGG - chr3_2:43522710-43522729 Msa0406750:CDS 35.0%
TGAGCATGCATGAAAATGTA+TGG - chr3_2:43522939-43522958 Msa0406750:CDS 35.0%
CTAATACTATGCAGATATCG+GGG - chr3_2:43522993-43523012 Msa0406750:CDS 35.0%
TTTGGACATCAGATAGTTTG+AGG + chr3_2:43523053-43523072 None:intergenic 35.0%
AGGAACCTATTAAGGAGAAA+AGG + chr3_2:43523101-43523120 None:intergenic 35.0%
! AACATGAGAAAGGCATAGTT+GGG + chr3_2:43523222-43523241 None:intergenic 35.0%
! AAACATGAGAAAGGCATAGT+TGG + chr3_2:43523223-43523242 None:intergenic 35.0%
TAAACGAGCAAACATGAGAA+AGG + chr3_2:43523232-43523251 None:intergenic 35.0%
! TTTAACTTCTTGTGTGGTCT+TGG - chr3_2:43523422-43523441 Msa0406750:intron 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG - chr3_2:43523495-43523514 Msa0406750:intron 35.0%
GTGACCAAAACCAAAATTCT+TGG - chr3_2:43523560-43523579 Msa0406750:CDS 35.0%
!!! ACGACCAAGAATTTTGGTTT+TGG + chr3_2:43523567-43523586 None:intergenic 35.0%
AAAACCAAAATTCTTGGTCG+TGG - chr3_2:43523566-43523585 Msa0406750:CDS 35.0%
ATAAGTGCCTGTGTTATATC+AGG - chr3_2:43523675-43523694 Msa0406750:CDS 35.0%
TATCAGGTATTCATCAATGG+AGG - chr3_2:43523691-43523710 Msa0406750:CDS 35.0%
ATCAGGTATTCATCAATGGA+GGG - chr3_2:43523692-43523711 Msa0406750:CDS 35.0%
ATCAATGGAGGGATATTACT+TGG - chr3_2:43523703-43523722 Msa0406750:CDS 35.0%
! CTACGATTTTTCGTAAAGCT+GGG - chr3_2:43524148-43524167 Msa0406750:intron 35.0%
AGTAGCTACCAAGATGAAAA+CGG + chr3_2:43524229-43524248 None:intergenic 35.0%
!!! CTTGGTAGCTACTTTTTTGT+TGG - chr3_2:43524236-43524255 Msa0406750:intron 35.0%
!!! AGCTACTTTTTTGTTGGATC+GGG - chr3_2:43524242-43524261 Msa0406750:intron 35.0%
CCGTTATTGTTATCTAGTGT+TGG - chr3_2:43524276-43524295 Msa0406750:intron 35.0%
GATTTCGTTGTTAACTCTAG+CGG - chr3_2:43524308-43524327 Msa0406750:intron 35.0%
AATTGAAAAAGTTGCCACGT+AGG + chr3_2:43524409-43524428 None:intergenic 35.0%
!!! TACGTGGCAACTTTTTCAAT+TGG - chr3_2:43524408-43524427 Msa0406750:CDS 35.0%
!! TCTGATAAGATAAGCATTGG+AGG - chr3_2:43524561-43524580 Msa0406750:five_prime_UTR 35.0%
!! CTGATAAGATAAGCATTGGA+GGG - chr3_2:43524562-43524581 Msa0406750:five_prime_UTR 35.0%
!! TGATAAGATAAGCATTGGAG+GGG - chr3_2:43524563-43524582 Msa0406750:five_prime_UTR 35.0%
CTAATTAAGAATTATGGCGG+AGG - chr3_2:43522421-43522440 Msa0406750:CDS 35.0%
! TCCATGACTTCCATTTTACT+TGG - chr3_2:43522536-43522555 Msa0406750:CDS 35.0%
ACCAAGTAAAATGGAAGTCA+TGG + chr3_2:43522540-43522559 None:intergenic 35.0%
! AATTAATCTAGGGTTGGGTT+TGG + chr3_2:43522672-43522691 None:intergenic 35.0%
ACATAAGTTTCATTCCCTCT+TGG - chr3_2:43522709-43522728 Msa0406750:CDS 35.0%
CATAAGTTTCATTCCCTCTT+GGG - chr3_2:43522710-43522729 Msa0406750:CDS 35.0%
TGAGCATGCATGAAAATGTA+TGG - chr3_2:43522939-43522958 Msa0406750:CDS 35.0%
CTAATACTATGCAGATATCG+GGG - chr3_2:43522993-43523012 Msa0406750:CDS 35.0%
TTTGGACATCAGATAGTTTG+AGG + chr3_2:43523053-43523072 None:intergenic 35.0%
AGGAACCTATTAAGGAGAAA+AGG + chr3_2:43523101-43523120 None:intergenic 35.0%
! AACATGAGAAAGGCATAGTT+GGG + chr3_2:43523222-43523241 None:intergenic 35.0%
! AAACATGAGAAAGGCATAGT+TGG + chr3_2:43523223-43523242 None:intergenic 35.0%
TAAACGAGCAAACATGAGAA+AGG + chr3_2:43523232-43523251 None:intergenic 35.0%
! TTTAACTTCTTGTGTGGTCT+TGG - chr3_2:43523422-43523441 Msa0406750:intron 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG - chr3_2:43523495-43523514 Msa0406750:intron 35.0%
GTGACCAAAACCAAAATTCT+TGG - chr3_2:43523560-43523579 Msa0406750:CDS 35.0%
!!! ACGACCAAGAATTTTGGTTT+TGG + chr3_2:43523567-43523586 None:intergenic 35.0%
AAAACCAAAATTCTTGGTCG+TGG - chr3_2:43523566-43523585 Msa0406750:CDS 35.0%
ATAAGTGCCTGTGTTATATC+AGG - chr3_2:43523675-43523694 Msa0406750:CDS 35.0%
TATCAGGTATTCATCAATGG+AGG - chr3_2:43523691-43523710 Msa0406750:CDS 35.0%
ATCAGGTATTCATCAATGGA+GGG - chr3_2:43523692-43523711 Msa0406750:CDS 35.0%
ATCAATGGAGGGATATTACT+TGG - chr3_2:43523703-43523722 Msa0406750:CDS 35.0%
! CTACGATTTTTCGTAAAGCT+GGG - chr3_2:43524148-43524167 Msa0406750:intron 35.0%
AGTAGCTACCAAGATGAAAA+CGG + chr3_2:43524229-43524248 None:intergenic 35.0%
!!! CTTGGTAGCTACTTTTTTGT+TGG - chr3_2:43524236-43524255 Msa0406750:intron 35.0%
!!! AGCTACTTTTTTGTTGGATC+GGG - chr3_2:43524242-43524261 Msa0406750:intron 35.0%
CCGTTATTGTTATCTAGTGT+TGG - chr3_2:43524276-43524295 Msa0406750:intron 35.0%
GATTTCGTTGTTAACTCTAG+CGG - chr3_2:43524308-43524327 Msa0406750:intron 35.0%
AATTGAAAAAGTTGCCACGT+AGG + chr3_2:43524409-43524428 None:intergenic 35.0%
!!! TACGTGGCAACTTTTTCAAT+TGG - chr3_2:43524408-43524427 Msa0406750:CDS 35.0%
!! TCTGATAAGATAAGCATTGG+AGG - chr3_2:43524561-43524580 Msa0406750:five_prime_UTR 35.0%
!! CTGATAAGATAAGCATTGGA+GGG - chr3_2:43524562-43524581 Msa0406750:five_prime_UTR 35.0%
!! TGATAAGATAAGCATTGGAG+GGG - chr3_2:43524563-43524582 Msa0406750:five_prime_UTR 35.0%
AATCCAATCAGATGTTCGAC+CGG + chr3_2:43523130-43523149 None:intergenic 40.0%
ATGTTTGCTCGTTTAATCGC+TGG - chr3_2:43523237-43523256 Msa0406750:intron 40.0%
!! TTAATCGCTGGTATTGGCAT+CGG - chr3_2:43523249-43523268 Msa0406750:intron 40.0%
TGGTCCACACAAGTTGTATT+TGG - chr3_2:43523442-43523461 Msa0406750:intron 40.0%
GTGACCAAATACAACTTGTG+TGG + chr3_2:43523449-43523468 None:intergenic 40.0%
GCATTAGCTAGGTTCATTGT+AGG + chr3_2:43523609-43523628 None:intergenic 40.0%
AGCTTTCACTTAGATTAGGG+TGG - chr3_2:43523752-43523771 Msa0406750:CDS 40.0%
CTTGTCATGAAAGGAAGACT+CGG - chr3_2:43523856-43523875 Msa0406750:intron 40.0%
AAAGAAAACCAACGAGAGAG+AGG - chr3_2:43523999-43524018 Msa0406750:intron 40.0%
AAGAAAACCAACGAGAGAGA+GGG - chr3_2:43524000-43524019 Msa0406750:intron 40.0%
! CACATTGTTATTGCTGCTCT+TGG - chr3_2:43524072-43524091 Msa0406750:intron 40.0%
!!! CACTTTTTTCAACAGGCTTC+AGG - chr3_2:43524099-43524118 Msa0406750:intron 40.0%
CCAGCTTTACGAAAAATCGT+AGG + chr3_2:43524150-43524169 None:intergenic 40.0%
! CCTACGATTTTTCGTAAAGC+TGG - chr3_2:43524147-43524166 Msa0406750:intron 40.0%
! AGCTGGGTTAGAATCTGATA+CGG - chr3_2:43524164-43524183 Msa0406750:intron 40.0%
!!! ACTTTTTTGTTGGATCGGGT+CGG - chr3_2:43524246-43524265 Msa0406750:intron 40.0%
!! GTTATCTAGTGTTGGTGGAA+TGG - chr3_2:43524284-43524303 Msa0406750:intron 40.0%
!!! GGCAACTTTTTCAATTGGTG+CGG - chr3_2:43524413-43524432 Msa0406750:CDS 40.0%
!!! GCAACTTTTTCAATTGGTGC+GGG - chr3_2:43524414-43524433 Msa0406750:CDS 40.0%
!!! GTTCTGAGATTTTTCCGTTG+AGG - chr3_2:43524457-43524476 Msa0406750:five_prime_UTR 40.0%
TGGTGAATAGAGTGACAAGT+GGG - chr3_2:43524511-43524530 Msa0406750:five_prime_UTR 40.0%
TACATTGCTTCCTGAAACAC+AGG - chr3_2:43524635-43524654 Msa0406750:five_prime_UTR 40.0%
ACATTGCTTCCTGAAACACA+GGG - chr3_2:43524636-43524655 Msa0406750:five_prime_UTR 40.0%
AATCCAATCAGATGTTCGAC+CGG + chr3_2:43523130-43523149 None:intergenic 40.0%
ATGTTTGCTCGTTTAATCGC+TGG - chr3_2:43523237-43523256 Msa0406750:intron 40.0%
!! TTAATCGCTGGTATTGGCAT+CGG - chr3_2:43523249-43523268 Msa0406750:intron 40.0%
TGGTCCACACAAGTTGTATT+TGG - chr3_2:43523442-43523461 Msa0406750:intron 40.0%
GTGACCAAATACAACTTGTG+TGG + chr3_2:43523449-43523468 None:intergenic 40.0%
GCATTAGCTAGGTTCATTGT+AGG + chr3_2:43523609-43523628 None:intergenic 40.0%
AGCTTTCACTTAGATTAGGG+TGG - chr3_2:43523752-43523771 Msa0406750:CDS 40.0%
CTTGTCATGAAAGGAAGACT+CGG - chr3_2:43523856-43523875 Msa0406750:intron 40.0%
AAAGAAAACCAACGAGAGAG+AGG - chr3_2:43523999-43524018 Msa0406750:intron 40.0%
AAGAAAACCAACGAGAGAGA+GGG - chr3_2:43524000-43524019 Msa0406750:intron 40.0%
! CACATTGTTATTGCTGCTCT+TGG - chr3_2:43524072-43524091 Msa0406750:intron 40.0%
!!! CACTTTTTTCAACAGGCTTC+AGG - chr3_2:43524099-43524118 Msa0406750:intron 40.0%
CCAGCTTTACGAAAAATCGT+AGG + chr3_2:43524150-43524169 None:intergenic 40.0%
! CCTACGATTTTTCGTAAAGC+TGG - chr3_2:43524147-43524166 Msa0406750:intron 40.0%
! AGCTGGGTTAGAATCTGATA+CGG - chr3_2:43524164-43524183 Msa0406750:intron 40.0%
!!! ACTTTTTTGTTGGATCGGGT+CGG - chr3_2:43524246-43524265 Msa0406750:intron 40.0%
!! GTTATCTAGTGTTGGTGGAA+TGG - chr3_2:43524284-43524303 Msa0406750:intron 40.0%
!!! GGCAACTTTTTCAATTGGTG+CGG - chr3_2:43524413-43524432 Msa0406750:CDS 40.0%
!!! GCAACTTTTTCAATTGGTGC+GGG - chr3_2:43524414-43524433 Msa0406750:CDS 40.0%
!!! GTTCTGAGATTTTTCCGTTG+AGG - chr3_2:43524457-43524476 Msa0406750:five_prime_UTR 40.0%
TGGTGAATAGAGTGACAAGT+GGG - chr3_2:43524511-43524530 Msa0406750:five_prime_UTR 40.0%
TACATTGCTTCCTGAAACAC+AGG - chr3_2:43524635-43524654 Msa0406750:five_prime_UTR 40.0%
ACATTGCTTCCTGAAACACA+GGG - chr3_2:43524636-43524655 Msa0406750:five_prime_UTR 40.0%
TATCCCAGTACTGCACAAAG+AGG + chr3_2:43522370-43522389 None:intergenic 45.0%
TGCTTTCGCCTGTGCTATAT+TGG - chr3_2:43522511-43522530 Msa0406750:CDS 45.0%
CATGGAAGCCAATATAGCAC+AGG + chr3_2:43522522-43522541 None:intergenic 45.0%
GTCCAAATCGAAATCCTCGT+AGG - chr3_2:43523066-43523085 Msa0406750:CDS 45.0%
TGCCTACGAGGATTTCGATT+TGG + chr3_2:43523071-43523090 None:intergenic 45.0%
!! AAAGGTTGATGATGCCTACG+AGG + chr3_2:43523083-43523102 None:intergenic 45.0%
GGTCGAACATCTGATTGGAT+TGG - chr3_2:43523129-43523148 Msa0406750:CDS 45.0%
GCTCGTTTAATCGCTGGTAT+TGG - chr3_2:43523243-43523262 Msa0406750:intron 45.0%
ACTATTAGGTACCTCAGGGA+AGG + chr3_2:43523346-43523365 None:intergenic 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG - chr3_2:43523522-43523541 Msa0406750:intron 45.0%
! TGGACCACGACCAAGAATTT+TGG + chr3_2:43523573-43523592 None:intergenic 45.0%
TTGTAGGAGAAACACTTGCG+TGG + chr3_2:43523593-43523612 None:intergenic 45.0%
CCAACGGCTAAGATTACTGA+AGG + chr3_2:43523805-43523824 None:intergenic 45.0%
CCTTCAGTAATCTTAGCCGT+TGG - chr3_2:43523802-43523821 Msa0406750:CDS 45.0%
AACCTCTGACTCAGAACAAG+AGG - chr3_2:43523903-43523922 Msa0406750:intron 45.0%
ACTCAGTGAAATCAAAGCCG+CGG - chr3_2:43523936-43523955 Msa0406750:intron 45.0%
!! ATTTTCAGGAATTCCAGCCG+CGG + chr3_2:43523956-43523975 None:intergenic 45.0%
! ACGTCGTCGTTGCAATTTTC+AGG + chr3_2:43523970-43523989 None:intergenic 45.0%
TTACTTGCAACTGTAGCCGT+TGG - chr3_2:43524192-43524211 Msa0406750:intron 45.0%
! AACGGTTTTCGCCAATCCAA+CGG + chr3_2:43524211-43524230 None:intergenic 45.0%
! GGCGAAAACCGTTTTCATCT+TGG - chr3_2:43524218-43524237 Msa0406750:intron 45.0%
!!! CTTTTTTGTTGGATCGGGTC+GGG - chr3_2:43524247-43524266 Msa0406750:intron 45.0%
! TGCATCTGTTTTGTCCTACG+TGG - chr3_2:43524392-43524411 Msa0406750:CDS 45.0%
GTGGTGAATAGAGTGACAAG+TGG - chr3_2:43524510-43524529 Msa0406750:five_prime_UTR 45.0%
TTTGGTGGAATTGCAGCTTG+TGG - chr3_2:43524597-43524616 Msa0406750:five_prime_UTR 45.0%
TATCCCAGTACTGCACAAAG+AGG + chr3_2:43522370-43522389 None:intergenic 45.0%
TGCTTTCGCCTGTGCTATAT+TGG - chr3_2:43522511-43522530 Msa0406750:CDS 45.0%
CATGGAAGCCAATATAGCAC+AGG + chr3_2:43522522-43522541 None:intergenic 45.0%
GTCCAAATCGAAATCCTCGT+AGG - chr3_2:43523066-43523085 Msa0406750:CDS 45.0%
TGCCTACGAGGATTTCGATT+TGG + chr3_2:43523071-43523090 None:intergenic 45.0%
!! AAAGGTTGATGATGCCTACG+AGG + chr3_2:43523083-43523102 None:intergenic 45.0%
GGTCGAACATCTGATTGGAT+TGG - chr3_2:43523129-43523148 Msa0406750:CDS 45.0%
GCTCGTTTAATCGCTGGTAT+TGG - chr3_2:43523243-43523262 Msa0406750:intron 45.0%
ACTATTAGGTACCTCAGGGA+AGG + chr3_2:43523346-43523365 None:intergenic 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG - chr3_2:43523522-43523541 Msa0406750:intron 45.0%
! TGGACCACGACCAAGAATTT+TGG + chr3_2:43523573-43523592 None:intergenic 45.0%
TTGTAGGAGAAACACTTGCG+TGG + chr3_2:43523593-43523612 None:intergenic 45.0%
CCAACGGCTAAGATTACTGA+AGG + chr3_2:43523805-43523824 None:intergenic 45.0%
CCTTCAGTAATCTTAGCCGT+TGG - chr3_2:43523802-43523821 Msa0406750:CDS 45.0%
AACCTCTGACTCAGAACAAG+AGG - chr3_2:43523903-43523922 Msa0406750:intron 45.0%
ACTCAGTGAAATCAAAGCCG+CGG - chr3_2:43523936-43523955 Msa0406750:intron 45.0%
!! ATTTTCAGGAATTCCAGCCG+CGG + chr3_2:43523956-43523975 None:intergenic 45.0%
! ACGTCGTCGTTGCAATTTTC+AGG + chr3_2:43523970-43523989 None:intergenic 45.0%
TTACTTGCAACTGTAGCCGT+TGG - chr3_2:43524192-43524211 Msa0406750:intron 45.0%
! AACGGTTTTCGCCAATCCAA+CGG + chr3_2:43524211-43524230 None:intergenic 45.0%
! GGCGAAAACCGTTTTCATCT+TGG - chr3_2:43524218-43524237 Msa0406750:intron 45.0%
!!! CTTTTTTGTTGGATCGGGTC+GGG - chr3_2:43524247-43524266 Msa0406750:intron 45.0%
! TGCATCTGTTTTGTCCTACG+TGG - chr3_2:43524392-43524411 Msa0406750:CDS 45.0%
GTGGTGAATAGAGTGACAAG+TGG - chr3_2:43524510-43524529 Msa0406750:five_prime_UTR 45.0%
TTTGGTGGAATTGCAGCTTG+TGG - chr3_2:43524597-43524616 Msa0406750:five_prime_UTR 45.0%
!!! AATTTTTTATATTTTTTTGA+AGG + chr3_2:43522857-43522876 None:intergenic 5.0%
!!! AATTTTTTATATTTTTTTGA+AGG + chr3_2:43522857-43522876 None:intergenic 5.0%
TCAGCCTCTTTGTGCAGTAC+TGG - chr3_2:43522363-43522382 Msa0406750:CDS 50.0%
CAGCCTCTTTGTGCAGTACT+GGG - chr3_2:43522364-43522383 Msa0406750:CDS 50.0%
CACAGTAGCTCAGAAGTCTC+TGG - chr3_2:43522448-43522467 Msa0406750:CDS 50.0%
AGTAGCTCAGAAGTCTCTGG+AGG - chr3_2:43522451-43522470 Msa0406750:CDS 50.0%
CAGATATCGGGGTGATGAGT+GGG - chr3_2:43523004-43523023 Msa0406750:CDS 50.0%
AGATATCGGGGTGATGAGTG+GGG - chr3_2:43523005-43523024 Msa0406750:CDS 50.0%
TTAATAGGTTCCTGCCTCGC+CGG - chr3_2:43523108-43523127 Msa0406750:CDS 50.0%
AGTTGGGAGAGAATCCCATG+AGG + chr3_2:43523206-43523225 None:intergenic 50.0%
ATACTTCGGCGGTGTAGACA+GGG + chr3_2:43523293-43523312 None:intergenic 50.0%
ATTAGGTACCTCAGGGAAGG+AGG + chr3_2:43523343-43523362 None:intergenic 50.0%
TTAGGGTGGAGAGTGATGCT+CGG - chr3_2:43523766-43523785 Msa0406750:CDS 50.0%
TGGAGAGTGATGCTCGGAAT+AGG - chr3_2:43523772-43523791 Msa0406750:CDS 50.0%
AGGCATGGCTAGTACTCCAA+CGG + chr3_2:43523821-43523840 None:intergenic 50.0%
CCTTTCATGACAAGCCAACG+AGG + chr3_2:43523850-43523869 None:intergenic 50.0%
!! CCTCGTTGGCTTGTCATGAA+AGG - chr3_2:43523847-43523866 Msa0406750:CDS 50.0%
! AGCCTCTTGTTCTGAGTCAG+AGG + chr3_2:43523908-43523927 None:intergenic 50.0%
AGTAGTACCCTCTCTCTCGT+TGG + chr3_2:43524010-43524029 None:intergenic 50.0%
!! AGAGAGAGGGTACTACTGTG+TGG - chr3_2:43524013-43524032 Msa0406750:intron 50.0%
TGCAACTGTAGCCGTTGGAT+TGG - chr3_2:43524197-43524216 Msa0406750:intron 50.0%
CACGCGCGAATGATCAACAA+CGG + chr3_2:43524343-43524362 None:intergenic 50.0%
ATTCGCGCGTGAGACAAATG+TGG - chr3_2:43524352-43524371 Msa0406750:CDS 50.0%
TTCGCGCGTGAGACAAATGT+GGG - chr3_2:43524353-43524372 Msa0406750:CDS 50.0%
! GTGAGACAAATGTGGGCTGT+TGG - chr3_2:43524360-43524379 Msa0406750:CDS 50.0%
!! GGAGGGGCATTCTTTCTGTT+TGG - chr3_2:43524579-43524598 Msa0406750:five_prime_UTR 50.0%
! GGGGCATTCTTTCTGTTTGG+TGG - chr3_2:43524582-43524601 Msa0406750:five_prime_UTR 50.0%
GTGGAATTGCAGCTTGTGGA+TGG - chr3_2:43524601-43524620 Msa0406750:five_prime_UTR 50.0%
TCAGCCTCTTTGTGCAGTAC+TGG - chr3_2:43522363-43522382 Msa0406750:CDS 50.0%
CAGCCTCTTTGTGCAGTACT+GGG - chr3_2:43522364-43522383 Msa0406750:CDS 50.0%
CACAGTAGCTCAGAAGTCTC+TGG - chr3_2:43522448-43522467 Msa0406750:CDS 50.0%
AGTAGCTCAGAAGTCTCTGG+AGG - chr3_2:43522451-43522470 Msa0406750:CDS 50.0%
CAGATATCGGGGTGATGAGT+GGG - chr3_2:43523004-43523023 Msa0406750:CDS 50.0%
AGATATCGGGGTGATGAGTG+GGG - chr3_2:43523005-43523024 Msa0406750:CDS 50.0%
TTAATAGGTTCCTGCCTCGC+CGG - chr3_2:43523108-43523127 Msa0406750:CDS 50.0%
AGTTGGGAGAGAATCCCATG+AGG + chr3_2:43523206-43523225 None:intergenic 50.0%
ATACTTCGGCGGTGTAGACA+GGG + chr3_2:43523293-43523312 None:intergenic 50.0%
ATTAGGTACCTCAGGGAAGG+AGG + chr3_2:43523343-43523362 None:intergenic 50.0%
TTAGGGTGGAGAGTGATGCT+CGG - chr3_2:43523766-43523785 Msa0406750:CDS 50.0%
TGGAGAGTGATGCTCGGAAT+AGG - chr3_2:43523772-43523791 Msa0406750:CDS 50.0%
AGGCATGGCTAGTACTCCAA+CGG + chr3_2:43523821-43523840 None:intergenic 50.0%
CCTTTCATGACAAGCCAACG+AGG + chr3_2:43523850-43523869 None:intergenic 50.0%
!! CCTCGTTGGCTTGTCATGAA+AGG - chr3_2:43523847-43523866 Msa0406750:CDS 50.0%
! AGCCTCTTGTTCTGAGTCAG+AGG + chr3_2:43523908-43523927 None:intergenic 50.0%
AGTAGTACCCTCTCTCTCGT+TGG + chr3_2:43524010-43524029 None:intergenic 50.0%
!! AGAGAGAGGGTACTACTGTG+TGG - chr3_2:43524013-43524032 Msa0406750:intron 50.0%
TGCAACTGTAGCCGTTGGAT+TGG - chr3_2:43524197-43524216 Msa0406750:intron 50.0%
CACGCGCGAATGATCAACAA+CGG + chr3_2:43524343-43524362 None:intergenic 50.0%
ATTCGCGCGTGAGACAAATG+TGG - chr3_2:43524352-43524371 Msa0406750:CDS 50.0%
TTCGCGCGTGAGACAAATGT+GGG - chr3_2:43524353-43524372 Msa0406750:CDS 50.0%
! GTGAGACAAATGTGGGCTGT+TGG - chr3_2:43524360-43524379 Msa0406750:CDS 50.0%
!! GGAGGGGCATTCTTTCTGTT+TGG - chr3_2:43524579-43524598 Msa0406750:five_prime_UTR 50.0%
! GGGGCATTCTTTCTGTTTGG+TGG - chr3_2:43524582-43524601 Msa0406750:five_prime_UTR 50.0%
GTGGAATTGCAGCTTGTGGA+TGG - chr3_2:43524601-43524620 Msa0406750:five_prime_UTR 50.0%
GCAGATATCGGGGTGATGAG+TGG - chr3_2:43523003-43523022 Msa0406750:CDS 55.0%
GGCGAGGCAGGAACCTATTA+AGG + chr3_2:43523109-43523128 None:intergenic 55.0%
AATCAGATGTTCGACCGGCG+AGG + chr3_2:43523125-43523144 None:intergenic 55.0%
TCGCCGGTCGAACATCTGAT+TGG - chr3_2:43523124-43523143 Msa0406750:CDS 55.0%
CGGCAAGGACGATGGTGTAA+CGG + chr3_2:43523158-43523177 None:intergenic 55.0%
CGTTACACCATCGTCCTTGC+CGG - chr3_2:43523156-43523175 Msa0406750:CDS 55.0%
TACTTCGGCGGTGTAGACAG+GGG + chr3_2:43523292-43523311 None:intergenic 55.0%
GATACTTCGGCGGTGTAGAC+AGG + chr3_2:43523294-43523313 None:intergenic 55.0%
AGAGGAAGCGGGGGATACTT+CGG + chr3_2:43523307-43523326 None:intergenic 55.0%
ACAAGCCAACGAGGTGACTC+AGG + chr3_2:43523841-43523860 None:intergenic 55.0%
AGTGAAATCAAAGCCGCGGC+TGG - chr3_2:43523940-43523959 Msa0406750:intron 55.0%
TTGGTGCGGGTCCCATTACT+TGG - chr3_2:43524427-43524446 Msa0406750:exon 55.0%
TGGTGCGGGTCCCATTACTT+GGG - chr3_2:43524428-43524447 Msa0406750:exon 55.0%
CACTCTATTCACCACCACCC+CGG + chr3_2:43524505-43524524 None:intergenic 55.0%
GCAGATATCGGGGTGATGAG+TGG - chr3_2:43523003-43523022 Msa0406750:CDS 55.0%
GGCGAGGCAGGAACCTATTA+AGG + chr3_2:43523109-43523128 None:intergenic 55.0%
AATCAGATGTTCGACCGGCG+AGG + chr3_2:43523125-43523144 None:intergenic 55.0%
TCGCCGGTCGAACATCTGAT+TGG - chr3_2:43523124-43523143 Msa0406750:CDS 55.0%
CGGCAAGGACGATGGTGTAA+CGG + chr3_2:43523158-43523177 None:intergenic 55.0%
CGTTACACCATCGTCCTTGC+CGG - chr3_2:43523156-43523175 Msa0406750:CDS 55.0%
TACTTCGGCGGTGTAGACAG+GGG + chr3_2:43523292-43523311 None:intergenic 55.0%
GATACTTCGGCGGTGTAGAC+AGG + chr3_2:43523294-43523313 None:intergenic 55.0%
AGAGGAAGCGGGGGATACTT+CGG + chr3_2:43523307-43523326 None:intergenic 55.0%
ACAAGCCAACGAGGTGACTC+AGG + chr3_2:43523841-43523860 None:intergenic 55.0%
AGTGAAATCAAAGCCGCGGC+TGG - chr3_2:43523940-43523959 Msa0406750:intron 55.0%
TTGGTGCGGGTCCCATTACT+TGG - chr3_2:43524427-43524446 Msa0406750:exon 55.0%
TGGTGCGGGTCCCATTACTT+GGG - chr3_2:43524428-43524447 Msa0406750:exon 55.0%
CACTCTATTCACCACCACCC+CGG + chr3_2:43524505-43524524 None:intergenic 55.0%
CGAAGAAGATGGAGCCGGCA+AGG + chr3_2:43523173-43523192 None:intergenic 60.0%
GCCTGCGAAGAAGATGGAGC+CGG + chr3_2:43523178-43523197 None:intergenic 60.0%
GAGTGCGCCTGCGAAGAAGA+TGG + chr3_2:43523184-43523203 None:intergenic 60.0%
TTCGCAGGCGCACTCCTCAT+GGG - chr3_2:43523189-43523208 Msa0406750:intron 60.0%
CTTCCTCACCTCCTTCCCTG+AGG - chr3_2:43523332-43523351 Msa0406750:intron 60.0%
GTACCTCAGGGAAGGAGGTG+AGG + chr3_2:43523338-43523357 None:intergenic 60.0%
CCAACGAGGTGACTCAGGCA+TGG + chr3_2:43523836-43523855 None:intergenic 60.0%
CCATGCCTGAGTCACCTCGT+TGG - chr3_2:43523833-43523852 Msa0406750:CDS 60.0%
ATGTGACGCACTGCGCGTGT+AGG + chr3_2:43524057-43524076 None:intergenic 60.0%
CCTTGAGCGCGTAGCCTCAA+CGG + chr3_2:43524474-43524493 None:intergenic 60.0%
CGAAGAAGATGGAGCCGGCA+AGG + chr3_2:43523173-43523192 None:intergenic 60.0%
GCCTGCGAAGAAGATGGAGC+CGG + chr3_2:43523178-43523197 None:intergenic 60.0%
GAGTGCGCCTGCGAAGAAGA+TGG + chr3_2:43523184-43523203 None:intergenic 60.0%
TTCGCAGGCGCACTCCTCAT+GGG - chr3_2:43523189-43523208 Msa0406750:intron 60.0%
CTTCCTCACCTCCTTCCCTG+AGG - chr3_2:43523332-43523351 Msa0406750:intron 60.0%
GTACCTCAGGGAAGGAGGTG+AGG + chr3_2:43523338-43523357 None:intergenic 60.0%
CCAACGAGGTGACTCAGGCA+TGG + chr3_2:43523836-43523855 None:intergenic 60.0%
CCATGCCTGAGTCACCTCGT+TGG - chr3_2:43523833-43523852 Msa0406750:CDS 60.0%
ATGTGACGCACTGCGCGTGT+AGG + chr3_2:43524057-43524076 None:intergenic 60.0%
CCTTGAGCGCGTAGCCTCAA+CGG + chr3_2:43524474-43524493 None:intergenic 60.0%
AGATGTTCGACCGGCGAGGC+AGG + chr3_2:43523121-43523140 None:intergenic 65.0%
GATGGAGCCGGCAAGGACGA+TGG + chr3_2:43523166-43523185 None:intergenic 65.0%
! GCCGGCTCCATCTTCTTCGC+AGG - chr3_2:43523174-43523193 Msa0406750:intron 65.0%
CTTCGCAGGCGCACTCCTCA+TGG - chr3_2:43523188-43523207 Msa0406750:intron 65.0%
GGAAGCGGGGGATACTTCGG+CGG + chr3_2:43523304-43523323 None:intergenic 65.0%
GTATCCCCCGCTTCCTCTCG+CGG - chr3_2:43523309-43523328 Msa0406750:intron 65.0%
AGGAAGCCGCGAGAGGAAGC+GGG + chr3_2:43523318-43523337 None:intergenic 65.0%
GAGGAAGCCGCGAGAGGAAG+CGG + chr3_2:43523319-43523338 None:intergenic 65.0%
CCGTTGAGGCTACGCGCTCA+AGG - chr3_2:43524471-43524490 Msa0406750:five_prime_UTR 65.0%
AGATGTTCGACCGGCGAGGC+AGG + chr3_2:43523121-43523140 None:intergenic 65.0%
GATGGAGCCGGCAAGGACGA+TGG + chr3_2:43523166-43523185 None:intergenic 65.0%
! GCCGGCTCCATCTTCTTCGC+AGG - chr3_2:43523174-43523193 Msa0406750:intron 65.0%
CTTCGCAGGCGCACTCCTCA+TGG - chr3_2:43523188-43523207 Msa0406750:intron 65.0%
GGAAGCGGGGGATACTTCGG+CGG + chr3_2:43523304-43523323 None:intergenic 65.0%
GTATCCCCCGCTTCCTCTCG+CGG - chr3_2:43523309-43523328 Msa0406750:intron 65.0%
AGGAAGCCGCGAGAGGAAGC+GGG + chr3_2:43523318-43523337 None:intergenic 65.0%
GAGGAAGCCGCGAGAGGAAG+CGG + chr3_2:43523319-43523338 None:intergenic 65.0%
CCGTTGAGGCTACGCGCTCA+AGG - chr3_2:43524471-43524490 Msa0406750:five_prime_UTR 65.0%
GAAGCCGCGAGAGGAAGCGG+GGG + chr3_2:43523316-43523335 None:intergenic 70.0%
GGAAGCCGCGAGAGGAAGCG+GGG + chr3_2:43523317-43523336 None:intergenic 70.0%
GGAGGTGAGGAAGCCGCGAG+AGG + chr3_2:43523325-43523344 None:intergenic 70.0%
CGCGCTCAAGGTGCGTCTGC+CGG - chr3_2:43524483-43524502 Msa0406750:five_prime_UTR 70.0%
GCGCTCAAGGTGCGTCTGCC+GGG - chr3_2:43524484-43524503 Msa0406750:five_prime_UTR 70.0%
CGCTCAAGGTGCGTCTGCCG+GGG - chr3_2:43524485-43524504 Msa0406750:five_prime_UTR 70.0%
TCAAGGTGCGTCTGCCGGGG+TGG - chr3_2:43524488-43524507 Msa0406750:five_prime_UTR 70.0%
GAAGCCGCGAGAGGAAGCGG+GGG + chr3_2:43523316-43523335 None:intergenic 70.0%
GGAAGCCGCGAGAGGAAGCG+GGG + chr3_2:43523317-43523336 None:intergenic 70.0%
GGAGGTGAGGAAGCCGCGAG+AGG + chr3_2:43523325-43523344 None:intergenic 70.0%
CGCGCTCAAGGTGCGTCTGC+CGG - chr3_2:43524483-43524502 Msa0406750:five_prime_UTR 70.0%
GCGCTCAAGGTGCGTCTGCC+GGG - chr3_2:43524484-43524503 Msa0406750:five_prime_UTR 70.0%
CGCTCAAGGTGCGTCTGCCG+GGG - chr3_2:43524485-43524504 Msa0406750:five_prime_UTR 70.0%
TCAAGGTGCGTCTGCCGGGG+TGG - chr3_2:43524488-43524507 Msa0406750:five_prime_UTR 70.0%
AGGTGCGTCTGCCGGGGTGG+TGG - chr3_2:43524491-43524510 Msa0406750:five_prime_UTR 75.0%
AGGTGCGTCTGCCGGGGTGG+TGG - chr3_2:43524491-43524510 Msa0406750:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 43522217 43524659 43522217 ID=Msa0406750;Name=Msa0406750
chr3_2 mRNA 43522217 43524659 43522217 ID=Msa0406750-mRNA-1;Parent=Msa0406750;Name=Msa0406750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=217|1|1|1|1|1|3|0|480
chr3_2 exon 43522217 43523179 43522217 ID=Msa0406750-mRNA-1:exon:8415;Parent=Msa0406750-mRNA-1
chr3_2 exon 43523523 43523869 43523523 ID=Msa0406750-mRNA-1:exon:8414;Parent=Msa0406750-mRNA-1
chr3_2 exon 43524313 43524659 43524313 ID=Msa0406750-mRNA-1:exon:8413;Parent=Msa0406750-mRNA-1
chr3_2 five_prime_UTR 43524443 43524659 43524443 ID=Msa0406750-mRNA-1:five_prime_utr;Parent=Msa0406750-mRNA-1
chr3_2 CDS 43524313 43524442 43524313 ID=Msa0406750-mRNA-1:cds;Parent=Msa0406750-mRNA-1
chr3_2 CDS 43523523 43523869 43523523 ID=Msa0406750-mRNA-1:cds;Parent=Msa0406750-mRNA-1
chr3_2 CDS 43522217 43523179 43522217 ID=Msa0406750-mRNA-1:cds;Parent=Msa0406750-mRNA-1
Gene Sequence

>Msa0406750

ATGGCGGAGGGAAACACAGTAGCTCAGAAGTCTCTGGAGGATTTCAATCCTCAAAAGAAACCTGAATCAAACAAGTTTGCTTTCGCCTGTGCTATATTGGCTTCCATGACTTCCATTTTACTTGGTTATGATATCGGGGTGATGAGTGGGGCAGTGATATACATAAAAAGAGACCTCAAACTATCTGATGTCCAAATCGAAATCCTCGTAGGCATCATCAACCTTTTCTCCTTAATAGGTTCCTGCCTCGCCGGTCGAACATCTGATTGGATTGGTCGCCGTTACACCATCGTCCTTGCCGGCTCCATCTTCTTCGCAGGCGCACTCCTCATGGGATTCTCTCCCAACTATGCCTTTCTCATGTTTGCTCGTTTAATCGCTGGTATTGGCATCGGCTACGCTCTCATGATCGCCCCTGTCTACACCGCCGAAGTATCCCCCGCTTCCTCTCGCGGCTTCCTCACCTCCTTCCCTGAGGTATTCATCAATGGAGGGATATTACTTGGATACATTTCAAACTATGGATTTTCTAAGCTTTCACTTAGATTAGGGTGGAGAGTGATGCTCGGAATAGGAGCAATTCCTTCAGTAATCTTAGCCGTTGGAGTACTAGCCATGCCTGAGTCACCTCGTTGGCTTGTCATGAAAGGAAGACTCGGAGACGCTATAAAAGTACTCAACAAAACCTCTGACTCAGAACAAGAGGCTCAGCTTCGACTCAGTGAAATCAAAGCCGCGGCTGGAATTCCTGAAAATTGCAACGACGACGTCGTTTCAGTAAAGAAAACCAACGAGAGAGAGGGTACTACTGTGTGGAAAGAGTTGTTTATTTATCCTACACGCGCAGTGCGTCACATTGTTATTGCTGCTCTTGGTATTCACTTTTTTCAACAGGCTTCAGGTATAGACGCTGTCGTTTTGTATAGTCCTACGATTTTTCGTAAAGCTGGGTTAGAATCTGATACGGAACAGTTACTTGCAACTGTAGCCGTTGGATTGGCGAAAACCGTTTTCATCTTGGTAGCTACTTTTTTGTTGGATCGGGTCGGGCGAAGACCGTTATTGTTATCTAGTGTTGGTGGAATGGTGATTTCGTTGTTAACTCTAGCGGTGAGTTTAACCGTTGTTGATCATTCGCGCGTGAGACAAATGTGGGCTGTTGGATTGAGTATTGCATCTGTTTTGTCCTACGTGGCAACTTTTTCAATTGGTGCGGGTCCCATTACTTGGGTTTATAGTTCTGAGATTTTTCCGTTGAGGCTACGCGCTCAAGGTGCGTCTGCCGGGGTGGTGGTGAATAGAGTGACAAGTGGGATAATTTCAATGACGTTTTTGTCCTTGTCTGATAAGATAAGCATTGGAGGGGCATTCTTTCTGTTTGGTGGAATTGCAGCTTGTGGATGGATTTTTTTCTATACATTGCTTCCTGAAACACAGGGC
Protein sequence

>Msa0406750

MAEGNTVAQKSLEDFNPQKKPESNKFAFACAILASMTSILLGYDIGVMSGAVIYIKRDLKLSDVQIEILVGIINLFSLIGSCLAGRTSDWIGRRYTIVLAGSIFFAGALLMGFSPNYAFLMFARLIAGIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILLGYISNYGFSKLSLRLGWRVMLGIGAIPSVILAVGVLAMPESPRWLVMKGRLGDAIKVLNKTSDSEQEAQLRLSEIKAAAGIPENCNDDVVSVKKTNEREGTTVWKELFIYPTRAVRHIVIAALGIHFFQQASGIDAVVLYSPTIFRKAGLESDTEQLLATVAVGLAKTVFILVATFLLDRVGRRPLLLSSVGGMVISLLTLAVSLTVVDHSRVRQMWAVGLSIASVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGASAGVVVNRVTSGIISMTFLSLSDKISIGGAFFLFGGIAACGWIFFYTLLPETQG