AlfalfaGEDB | Msa0479840

M. sativa cultivar zhongmu-4 / Msa0479840

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0479840	XP_003603886.1	96.887	514	15	1	1	513	1	514	0.0	993

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0479840	sp\|Q8VZ80\|PLT5_ARATH	71.657	501	140	2	13	513	22	520	0.0	740

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0479840	G7J6H8	96.887	514	15	1	1	513	1	514	0.0	993

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0386460	Msa0479840	0.915501	5.464760e-85	-8.615850e-47
Msa0406750	Msa0479840	0.888636	4.950916e-73	-8.615850e-47
Msa0479840	Msa0523660	0.984401	1.881815e-160	-8.615850e-47
Msa0479840	Msa0588020	0.828149	1.055598e-54	-8.615850e-47
Msa0479840	Msa1401930	0.971207	8.413544e-133	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0479840	MtrunA17_Chr3g0144361	96.887	514	15	1	1	513	1	514	0.0	993
Msa0479840	MtrunA17_Chr4g0034681	81.092	513	91	3	1	509	1	511	0.0	853
Msa0479840	MtrunA17_Chr4g0036021	75.097	514	124	2	1	513	1	511	0.0	775
Msa0479840	MtrunA17_Chr8g0373531	60.532	489	186	4	24	510	16	499	0.0	577
Msa0479840	MtrunA17_Chr5g0432581	58.386	471	192	3	24	492	16	484	0.0	561
Msa0479840	MtrunA17_Chr6g0485661	55.208	480	201	2	3	482	37	502	0.0	530
Msa0479840	MtrunA17_Chr2g0282031	53.518	469	202	4	19	487	45	497	1.54e-174	502
Msa0479840	MtrunA17_Chr4g0021771	48.419	506	238	5	5	510	37	519	2.18e-167	484
Msa0479840	MtrunA17_Chr5g0403831	47.451	510	254	3	3	510	7	504	3.73e-162	470
Msa0479840	MtrunA17_Chr8g0390521	52.248	467	213	3	24	490	15	471	3.59e-160	464

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0479840	AT3G18830.1	71.657	501	140	2	13	513	22	520	0.0	740
Msa0479840	AT2G16120.1	66.463	492	161	3	18	506	15	505	0.0	670
Msa0479840	AT2G16130.1	66.872	486	157	3	18	500	15	499	0.0	664
Msa0479840	AT4G36670.1	57.434	491	200	3	13	497	3	490	0.0	567
Msa0479840	AT2G18480.1	59.664	476	180	3	20	490	15	483	0.0	549
Msa0479840	AT2G20780.1	48.687	495	228	4	19	513	47	515	2.47e-163	474
Msa0479840	AT2G20780.2	48.690	458	209	4	56	513	26	457	1.54e-147	431
Msa0479840	AT2G43330.1	32.749	513	305	8	14	510	16	504	2.05e-73	241
Msa0479840	AT5G59250.1	31.393	481	299	8	21	487	90	553	3.80e-67	226
Msa0479840	AT5G17010.1	30.938	501	302	12	10	487	20	499	9.77e-66	221

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Find 165 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGAGAAAGGCAAAGT+TGG	0.465277	3_3:-85005779	None:intergenic
AAAGAAAACCAACGAGAGAG+AGG	0.561064	3_3:+85006437	Msa0479840:CDS
AAAGCAAACTTGTTTGATTC+AGG	0.250718	3_3:-85005053	None:intergenic
AAAGGTTGATGATGCCTACG+AGG	0.714277	3_3:-85005639	None:intergenic
AACATGAGAAAGGCAAAGTT+GGG	0.493834	3_3:-85005778	None:intergenic
AACCTCTGACTCAGAACAAG+AGG	0.549748	3_3:+85006341	Msa0479840:CDS
AACTCTAGCGGTGAGTTTAA+CGG	0.444296	3_3:+85006758	Msa0479840:CDS
AAGAAAACCAACGAGAGAGA+GGG	0.624435	3_3:+85006438	Msa0479840:CDS
AAGACCCTTCCATTTCTTCA+AGG	0.447145	3_3:-85007103	None:intergenic
AAGACCCTTGAAGAAATGGA+AGG	0.634454	3_3:+85007098	Msa0479840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTACCATAACCAAGTAAAA+TGG	-	chr3_3:85005108-85005127	None:intergenic	30.0%
ATAATAGTAGTTTCCCAAGA+GGG	-	chr3_3:85005285-85005304	None:intergenic	30.0%
AATAATAGTAGTTTCCCAAG+AGG	-	chr3_3:85005286-85005305	None:intergenic	30.0%
ACTAATACTATGCAGATATC+GGG	+	chr3_3:85005551-85005570	Msa0479840:intron	30.0%
TATTACTATTAGGTACCTCA+GGG	-	chr3_3:85005909-85005928	None:intergenic	30.0%
ATATTACTATTAGGTACCTC+AGG	-	chr3_3:85005910-85005929	None:intergenic	30.0%
CTACTACTAATACATTAGCT+AGG	-	chr3_3:85006044-85006063	None:intergenic	30.0%
CTTGGATACATTTCAAACTA+TGG	+	chr3_3:85006159-85006178	Msa0479840:CDS	30.0%
TCTAAGCTTTCACTTAGATT+AGG	+	chr3_3:85006186-85006205	Msa0479840:CDS	30.0%
CTAAGCTTTCACTTAGATTA+GGG	+	chr3_3:85006187-85006206	Msa0479840:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	85004776	85007432	85004776	ID=Msa0479840;Name=Msa0479840
chr3_3	mRNA	85004776	85007432	85004776	ID=Msa0479840-mRNA-1;Parent=Msa0479840;Name=Msa0479840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=217\|1\|1\|1\|1\|1\|3\|233\|513
chr3_3	exon	85004776	85005122	85004776	ID=Msa0479840-mRNA-1:exon:24244;Parent=Msa0479840-mRNA-1
chr3_3	exon	85005566	85005912	85005566	ID=Msa0479840-mRNA-1:exon:24245;Parent=Msa0479840-mRNA-1
chr3_3	exon	85006135	85007432	85006135	ID=Msa0479840-mRNA-1:exon:24246;Parent=Msa0479840-mRNA-1
chr3_3	five_prime_UTR	85004776	85004992	85004776	ID=Msa0479840-mRNA-1:five_prime_utr;Parent=Msa0479840-mRNA-1
chr3_3	CDS	85004993	85005122	85004993	ID=Msa0479840-mRNA-1:cds;Parent=Msa0479840-mRNA-1
chr3_3	CDS	85005566	85005912	85005566	ID=Msa0479840-mRNA-1:cds;Parent=Msa0479840-mRNA-1
chr3_3	CDS	85006135	85007199	85006135	ID=Msa0479840-mRNA-1:cds;Parent=Msa0479840-mRNA-1
chr3_3	three_prime_UTR	85007200	85007432	85007200	ID=Msa0479840-mRNA-1:three_prime_utr;Parent=Msa0479840-mRNA-1

Gene Sequence

>Msa0479840

ATGGCGGAGGGAAACACAGTAGCTCAGAAGTCTCTGGAGGATTTCAATCCTCAAAAGAAACCTGAATCAAACAAGTTTGCTTTCGCCTGTGCTATATTGGCTTCCATGACTTCCATTTTACTTGGTTATGATATCGGGGTGATGAGTGGGGCAGTGATATACATAAAAAGAGACCTCAAACTATCTGATGTCCAAATCGAAATCCTCGTAGGCATCATCAACCTTTTCTCCTTAATAGGTTCCTGCCTCGCCGGTCGAACCTCTGATTGGATTGGTCGCCGTTACACCATCGTCCTTGCCGGCTCCATCTTCTTCGCAGGCGCACTCCTCATGGGATTCTCTCCCAACTTTGCCTTTCTCATGTTTGCTCGTTTCATCGCTGGTATTGGCATCGGCTACGCTCTCATGATCGCCCCTGTCTACACCGCCGAAGTATCCCCCGCTTCCTCTCGCGGCTTCCTCACCTCCTTCCCTGAGGTATTCATCAATGGAGGGATATTACTTGGATACATTTCAAACTATGGATTTTCTAAGCTTTCACTTAGATTAGGGTGGAGAGTGATGCTCGGAATAGGAGCAATTCCTTCAGTAATCTTAGCCGTTGGAGTACTAGCCATGCCTGAGTCACCTCGTTGGCTTGTCATGAAAGGAAGACTCGGAGACGCTATAAAAGTACTCAACAAAACCTCTGACTCAGAACAAGAGGCTCAGCTTCGACTCAGTGAAATCAAAGCCGCGGCTGGAATTCCCGAAAACTGCAACGACGACGTCGTTTCAGTAAAGAAAACCAACGAGAGAGAGGGTACTACTGTGTGGAAAGAGTTGTTTGTTTATCCTACACCCGCAGTGCGTCACATTGTTATTGCTGCTCTTGGTATTCACTTTTTTCAACAGGCTTCGGGTATAGACGCTGTTGTTTTGTATAGTCCTACGATTTTTCGTAAAGCTGGGTTAGAATCTGATACGGAACAGTTACTTGCAACTGTAGCCGTTGGATTGGCGAAAACCGTTTTCATCTTGGTCGCTACTTTTTTGTTGGACCGGGTCGGGCGAAGACCGTTATTGTTATCTAGTGTTGGTGGAATGGTGATTTCATTGTTAACTCTAGCGGTGAGTTTAACGGCTGTGGATCATTCGCGCGTGAGACAAATGTGGGCCGTTGGATTGAGTATTGCATCTGTTTTGTCTTACGTGGCAACTTTTTCCATTGGTGCGGGTCCCATTACTTGGGTTTATAGTTCTGAGATTTTTCCGTTGAGGCTACGCGCTCAGGGTGCGTCTGCAGGGGTGGTGGTGAATAGGGTGACAAGTGGGATAATTTCAATGACGTTTTTGTCCTTGTCTGATAAGATAAGCATTGGAGGGGCATTCTTTCTGTTTGGTGGAATTGCAGCTTGTGGATGGATCTTTTTCTATACATTGCTTCCTGAAACACAGGGCAAGACCCTTGAAGAAATGGAAGGGTCTTTTGGGAAATTCAGAGGGAAGTCAAATAATAAGGGTGCCAACAATAATAACGGGGAGATCCAATTTGCCAATTAG

Protein sequence

>Msa0479840

MAEGNTVAQKSLEDFNPQKKPESNKFAFACAILASMTSILLGYDIGVMSGAVIYIKRDLKLSDVQIEILVGIINLFSLIGSCLAGRTSDWIGRRYTIVLAGSIFFAGALLMGFSPNFAFLMFARFIAGIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILLGYISNYGFSKLSLRLGWRVMLGIGAIPSVILAVGVLAMPESPRWLVMKGRLGDAIKVLNKTSDSEQEAQLRLSEIKAAAGIPENCNDDVVSVKKTNEREGTTVWKELFVYPTPAVRHIVIAALGIHFFQQASGIDAVVLYSPTIFRKAGLESDTEQLLATVAVGLAKTVFILVATFLLDRVGRRPLLLSSVGGMVISLLTLAVSLTAVDHSRVRQMWAVGLSIASVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGASAGVVVNRVTSGIISMTFLSLSDKISIGGAFFLFGGIAACGWIFFYTLLPETQGKTLEEMEGSFGKFRGKSNNKGANNNNGEIQFAN*