Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407840 | XP_024634879.1 | 69.355 | 248 | 64 | 4 | 56 | 294 | 332 | 576 | 5.61e-102 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407840 | G7J1X5 | 69.262 | 244 | 54 | 5 | 56 | 294 | 306 | 533 | 1.35e-97 | 312 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0407840 | Msa0495380 | 0.867621 | 1.195713e-65 | -8.615850e-47 |
| Msa0407840 | Msa1228190 | 0.822322 | 2.520023e-53 | -8.615850e-47 |
| Msa0407840 | Msa1271260 | 0.807190 | 5.704355e-50 | -8.615850e-47 |
| Msa0407840 | Msa1438250 | 0.815417 | 9.342660e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407840 | MtrunA17_Chr3g0098301 | 69.058 | 223 | 48 | 5 | 77 | 294 | 1 | 207 | 1.19e-93 | 283 |
| Msa0407840 | MtrunA17_Chr3g0098481 | 77.305 | 141 | 31 | 1 | 155 | 294 | 1 | 141 | 1.54e-70 | 221 |
| Msa0407840 | MtrunA17_Chr3g0098531 | 80.645 | 93 | 18 | 0 | 202 | 294 | 1 | 93 | 9.68e-47 | 159 |
| Msa0407840 | MtrunA17_Chr5g0439041 | 46.903 | 113 | 55 | 2 | 187 | 295 | 58 | 169 | 2.12e-28 | 108 |
| Msa0407840 | MtrunA17_Chr5g0439061 | 44.954 | 109 | 57 | 2 | 188 | 294 | 435 | 542 | 1.07e-22 | 98.2 |
| Msa0407840 | MtrunA17_Chr3g0102001 | 28.276 | 290 | 127 | 8 | 26 | 294 | 317 | 546 | 7.98e-22 | 95.5 |
| Msa0407840 | MtrunA17_Chr2g0286601 | 39.048 | 105 | 60 | 2 | 191 | 295 | 391 | 491 | 2.63e-16 | 79.0 |
| Msa0407840 | MtrunA17_Chr2g0286551 | 38.095 | 105 | 61 | 2 | 191 | 295 | 371 | 471 | 2.45e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATGTTCTTTATAAATTT+TGG | 0.128398 | 3_2:+46875089 | Msa0407840:CDS |
| AAGTGGCGTAGTTGAAATTT+TGG | 0.236991 | 3_2:+46879696 | Msa0407840:CDS |
| AGGTATTCCTGTCAAAGTTT+TGG | 0.292657 | 3_2:+46875118 | Msa0407840:CDS |
| CAAACCATGTATGCGGTATA+AGG | 0.328614 | 3_2:-46878082 | None:intergenic |
| CATCTTCAGAGTTAGTTTCA+TGG | 0.336064 | 3_2:-46879891 | None:intergenic |
| CGCAAGTTGTTGAGGGGTTG+TGG | 0.348606 | 3_2:+46879950 | Msa0407840:CDS |
| TTCAAGCACACTCATCATTT+CGG | 0.354541 | 3_2:-46879848 | None:intergenic |
| ATCAAGTGGTATAAGGTATA+AGG | 0.361769 | 3_2:+46880120 | Msa0407840:CDS |
| GTGGGACATCAAGTGGTATA+AGG | 0.386998 | 3_2:+46880113 | Msa0407840:CDS |
| TTGTTGAGGGGTTGTGGGAG+AGG | 0.395189 | 3_2:+46879956 | Msa0407840:CDS |
| GTTAAGAAGAACCACATATA+TGG | 0.395606 | 3_2:+46878028 | Msa0407840:CDS |
| GAAAACTCTTGGAAGGTATC+TGG | 0.399144 | 3_2:+46880072 | Msa0407840:CDS |
| GCCAAAAGGCATCAAAATAA+AGG | 0.405468 | 3_2:+46875065 | Msa0407840:CDS |
| GTTGTGGGAGAGGCTTTCTA+TGG | 0.410974 | 3_2:+46879966 | Msa0407840:CDS |
| CTTATTACTTGTAGAAATGA+AGG | 0.412792 | 3_2:+46879759 | Msa0407840:CDS |
| TTCATTTCTTCTTTATCAAA+GGG | 0.416928 | 3_2:-46878115 | None:intergenic |
| TGTTCTTACTAGCTTCCATT+TGG | 0.435951 | 3_2:-46878171 | None:intergenic |
| AGAGCTTAATTTAAAAGTAA+AGG | 0.446639 | 3_2:+46879720 | Msa0407840:CDS |
| TTTCATTTCTTCTTTATCAA+AGG | 0.446640 | 3_2:-46878116 | None:intergenic |
| GGGAGAAGGAAATCAAGAAA+TGG | 0.450021 | 3_2:+46879621 | Msa0407840:CDS |
| TTTGCATCCAAAACTTTGAC+AGG | 0.450345 | 3_2:-46875125 | None:intergenic |
| ATATGCAGCCATGTGTAAAA+TGG | 0.451379 | 3_2:-46880034 | None:intergenic |
| GCATCGACAACGAAAACTCT+TGG | 0.474914 | 3_2:+46880061 | Msa0407840:CDS |
| AGATGAAAATGCATTACATA+TGG | 0.493353 | 3_2:+46879909 | Msa0407840:CDS |
| AATTCCTTATACCGCATACA+TGG | 0.502973 | 3_2:+46878078 | Msa0407840:CDS |
| GCAAGTTGTTGAGGGGTTGT+GGG | 0.506150 | 3_2:+46879951 | Msa0407840:CDS |
| ATACCGCATACATGGTTTGT+GGG | 0.513187 | 3_2:+46878086 | Msa0407840:CDS |
| TATACCGCATACATGGTTTG+TGG | 0.514137 | 3_2:+46878085 | Msa0407840:CDS |
| TGCAGACATCAAGCGCCAAA+TGG | 0.520081 | 3_2:+46878156 | Msa0407840:CDS |
| GTAAAGGCATCTGACAAGAA+AGG | 0.522807 | 3_2:+46879736 | Msa0407840:CDS |
| AGACAACCGCAAGTTGTTGA+GGG | 0.537910 | 3_2:+46879943 | Msa0407840:CDS |
| TTCTAGACTTAAGCTCTGAA+AGG | 0.540002 | 3_2:-46879992 | None:intergenic |
| TAGACAACCGCAAGTTGTTG+AGG | 0.551855 | 3_2:+46879942 | Msa0407840:CDS |
| GATGTCCCACATCATTTGCA+TGG | 0.565189 | 3_2:-46880100 | None:intergenic |
| TCAGAGCTTAAGTCTAGAAG+TGG | 0.566023 | 3_2:+46879996 | Msa0407840:CDS |
| TATTTGCTTGCAGCAAAACA+TGG | 0.566438 | 3_2:+46879820 | Msa0407840:CDS |
| CACAACCCCTCAACAACTTG+CGG | 0.571050 | 3_2:-46879949 | None:intergenic |
| CGACAACGAAAACTCTTGGA+AGG | 0.585282 | 3_2:+46880065 | Msa0407840:CDS |
| AGAGTTGACCACCATATATG+TGG | 0.592664 | 3_2:-46878039 | None:intergenic |
| GAATTACAAGCAAAGAAAAG+TGG | 0.611961 | 3_2:+46879781 | Msa0407840:CDS |
| GTGCGGCCATGCAAATGATG+TGG | 0.618816 | 3_2:+46880094 | Msa0407840:CDS |
| CTCTTGGAAGGTATCTGGTG+CGG | 0.625717 | 3_2:+46880077 | Msa0407840:CDS |
| TTTGAAGACGTTGAAAACCA+AGG | 0.637372 | 3_2:+46875182 | Msa0407840:CDS |
| GACAACCGCAAGTTGTTGAG+GGG | 0.642150 | 3_2:+46879944 | Msa0407840:CDS |
| TGCGGCCATGCAAATGATGT+GGG | 0.663238 | 3_2:+46880095 | Msa0407840:CDS |
| AAGAAGAACCACATATATGG+TGG | 0.671892 | 3_2:+46878031 | Msa0407840:CDS |
| AAATGATGTGGGACATCAAG+TGG | 0.682623 | 3_2:+46880106 | Msa0407840:CDS |
| TTTCCCACAAACCATGTATG+CGG | 0.705823 | 3_2:-46878089 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTCGTAAATAAAT+TGG | + | chr3_2:46875292-46875311 | Msa0407840:intron | 10.0% |
| !!! | TTTATTATCGTTTTTTATTT+TGG | - | chr3_2:46875435-46875454 | None:intergenic | 10.0% |
| !! | ATAATACAAATGAATTATTA+AGG | - | chr3_2:46876824-46876843 | None:intergenic | 10.0% |
| !! | TGCTAAATTATTTAAAAATA+AGG | - | chr3_2:46877070-46877089 | None:intergenic | 10.0% |
| !! | ATTATATCATGTAAAATTAA+AGG | - | chr3_2:46877379-46877398 | None:intergenic | 10.0% |
| !!! | TAATTTTAGTAAAAGTAAAA+GGG | - | chr3_2:46877906-46877925 | None:intergenic | 10.0% |
| !!! | ATAATTTTAGTAAAAGTAAA+AGG | - | chr3_2:46877907-46877926 | None:intergenic | 10.0% |
| !! | TTATATTATACATTAAGTAT+TGG | + | chr3_2:46878993-46879012 | Msa0407840:intron | 10.0% |
| !! | AAAAAATAAATCAAAAAAAG+AGG | + | chr3_2:46879600-46879619 | Msa0407840:CDS | 10.0% |
| !! | AAAAATAAATCAAAAAAAGA+GGG | + | chr3_2:46879601-46879620 | Msa0407840:CDS | 10.0% |
| !!! | CTAATGTTCTTTATAAATTT+TGG | + | chr3_2:46875089-46875108 | Msa0407840:CDS | 15.0% |
| !!! | TTTATAAATTTTGGTGTTAA+AGG | + | chr3_2:46875098-46875117 | Msa0407840:CDS | 15.0% |
| !! | AATTACAAAACATTACATAA+TGG | - | chr3_2:46875249-46875268 | None:intergenic | 15.0% |
| !!! | TAAATTGGTTTTTTTCTAAA+AGG | + | chr3_2:46875307-46875326 | Msa0407840:intron | 15.0% |
| !! | TGTGAATTTAATGATAAATA+AGG | - | chr3_2:46876209-46876228 | None:intergenic | 15.0% |
| !!! | ATTTTACATGATATAATTTG+TGG | + | chr3_2:46877382-46877401 | Msa0407840:intron | 15.0% |
| !!! | GATTTTTCACTTAATTTATA+AGG | - | chr3_2:46877630-46877649 | None:intergenic | 15.0% |
| !!! | ATATGACAATTTTGTAAAAT+AGG | - | chr3_2:46879053-46879072 | None:intergenic | 15.0% |
| !! | GACAAAAAAAATCAAAATTA+TGG | - | chr3_2:46879326-46879345 | None:intergenic | 15.0% |
| !!! | AATTTTGATTTTTTTTGTCT+TGG | + | chr3_2:46879327-46879346 | Msa0407840:intron | 15.0% |
| !!! | TAGTAACTTTTATATGTATT+TGG | - | chr3_2:46879419-46879438 | None:intergenic | 15.0% |
| !! | GAGAAAGATATAAAAAAAAT+AGG | - | chr3_2:46879488-46879507 | None:intergenic | 15.0% |
| !! | ATAGTCAAATATTACAGAAA+AGG | + | chr3_2:46875385-46875404 | Msa0407840:intron | 20.0% |
| !! | ATTACTCATAAATATTTGAG+TGG | + | chr3_2:46875467-46875486 | Msa0407840:intron | 20.0% |
| !! | TTTATAGGTTTGATATCTTA+TGG | - | chr3_2:46875692-46875711 | None:intergenic | 20.0% |
| !! | AAGATATCAAACCTATAAAT+TGG | + | chr3_2:46875693-46875712 | Msa0407840:intron | 20.0% |
| !! | ATAACAAGAAAACAAATGTT+TGG | + | chr3_2:46875801-46875820 | Msa0407840:intron | 20.0% |
| !!! | TCAAATTTTGAAATTGTATC+AGG | - | chr3_2:46875997-46876016 | None:intergenic | 20.0% |
| !! | ACAACTACTTTAATAGTTTA+TGG | + | chr3_2:46876247-46876266 | Msa0407840:intron | 20.0% |
| !!! | ATGTTTGTAATTTTGTAAGT+TGG | + | chr3_2:46876474-46876493 | Msa0407840:intron | 20.0% |
| !!! | AACTACATTTAAGTTTCATA+CGG | + | chr3_2:46876683-46876702 | Msa0407840:intron | 20.0% |
| !! | AAGTTGAGTAATCTTATAAA+AGG | + | chr3_2:46877033-46877052 | Msa0407840:intron | 20.0% |
| !!! | TTTTGCAACATTAAATCAAT+AGG | - | chr3_2:46877487-46877506 | None:intergenic | 20.0% |
| !!! | TGAAAACTTTGACATTTTTA+TGG | + | chr3_2:46877823-46877842 | Msa0407840:intron | 20.0% |
| !! | GTAATGTCAACTTATAATAA+AGG | - | chr3_2:46877932-46877951 | None:intergenic | 20.0% |
| !!! | TAATTAATTTTGCAGACTTA+AGG | + | chr3_2:46877993-46878012 | Msa0407840:intron | 20.0% |
| !!! | AATTAATTTTGCAGACTTAA+GGG | + | chr3_2:46877994-46878013 | Msa0407840:intron | 20.0% |
| !! | TTCATTTCTTCTTTATCAAA+GGG | - | chr3_2:46878118-46878137 | None:intergenic | 20.0% |
| !! | TTTCATTTCTTCTTTATCAA+AGG | - | chr3_2:46878119-46878138 | None:intergenic | 20.0% |
| !! | ATCAAATTAAACTTACTAAC+CGG | - | chr3_2:46878603-46878622 | None:intergenic | 20.0% |
| !! | GAATATTATACATTAAGCAT+AGG | + | chr3_2:46878890-46878909 | Msa0407840:intron | 20.0% |
| !! | AATAATAGTGTTGTATTAGA+AGG | + | chr3_2:46879019-46879038 | Msa0407840:intron | 20.0% |
| !! | AGAGCTTAATTTAAAAGTAA+AGG | + | chr3_2:46879720-46879739 | Msa0407840:CDS | 20.0% |
| !!! | TTGTTTACTTTTATGCCAAA+AGG | + | chr3_2:46875051-46875070 | Msa0407840:CDS | 25.0% |
| ! | AATTCATTGAAAACTTACCT+TGG | - | chr3_2:46875202-46875221 | None:intergenic | 25.0% |
| !!! | CGTTTTTTATTTTGGTTTGA+TGG | - | chr3_2:46875427-46875446 | None:intergenic | 25.0% |
| ! | TGGATTAAGTCTAAACTTAA+TGG | - | chr3_2:46875527-46875546 | None:intergenic | 25.0% |
| ! | TTTAATGCTGTCCAATTTAT+AGG | - | chr3_2:46875707-46875726 | None:intergenic | 25.0% |
| ! | TATTACTGCTTAACTATGTT+AGG | - | chr3_2:46875779-46875798 | None:intergenic | 25.0% |
| ! | AAATTAATTTAATCCACCGA+GGG | - | chr3_2:46875882-46875901 | None:intergenic | 25.0% |
| ! | GTCTAAGTAACTCTAAATAA+AGG | + | chr3_2:46875967-46875986 | Msa0407840:intron | 25.0% |
| ! | CATAAAAGAAGTTTATGTGT+TGG | - | chr3_2:46876022-46876041 | None:intergenic | 25.0% |
| !! | CAACACATAAACTTCTTTTA+TGG | + | chr3_2:46876020-46876039 | Msa0407840:intron | 25.0% |
| !! | CACTAAAACATCAAAAGTTT+TGG | + | chr3_2:46876312-46876331 | Msa0407840:intron | 25.0% |
| !!! | CTCTAAAACATCAAAAGAAA+AGG | + | chr3_2:46876348-46876367 | Msa0407840:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | + | chr3_2:46876353-46876372 | Msa0407840:intron | 25.0% |
| !!! | AATTTTCTCCTTGTTTGTTT+TGG | - | chr3_2:46876427-46876446 | None:intergenic | 25.0% |
| !! | AGAAAATTACTCTAGTTTGA+AGG | + | chr3_2:46876439-46876458 | Msa0407840:intron | 25.0% |
| !!! | TTGATTTCGATTTTAGCAAA+TGG | + | chr3_2:46876578-46876597 | Msa0407840:intron | 25.0% |
| ! | AAATTATTCAATTTGCGACA+TGG | + | chr3_2:46876727-46876746 | Msa0407840:intron | 25.0% |
| ! | AATTATTCAATTTGCGACAT+GGG | + | chr3_2:46876728-46876747 | Msa0407840:intron | 25.0% |
| ! | TATTCATCAACATTGTGTAA+TGG | - | chr3_2:46877179-46877198 | None:intergenic | 25.0% |
| !! | CAATGTTGATGAATAAGAAA+AGG | + | chr3_2:46877184-46877203 | Msa0407840:intron | 25.0% |
| ! | TGTAACATAAAATCTTAGCA+CGG | - | chr3_2:46877253-46877272 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGTCTTGGTAAC+AGG | + | chr3_2:46879334-46879353 | Msa0407840:intron | 25.0% |
| ! | CATATTCTGTATATTTGTAG+AGG | + | chr3_2:46879573-46879592 | Msa0407840:intron | 25.0% |
| !! | AAAAGATACGACATTTTTGA+CGG | + | chr3_2:46879666-46879685 | Msa0407840:CDS | 25.0% |
| ! | CTTATTACTTGTAGAAATGA+AGG | + | chr3_2:46879759-46879778 | Msa0407840:CDS | 25.0% |
| ! | AGATGAAAATGCATTACATA+TGG | + | chr3_2:46879909-46879928 | Msa0407840:CDS | 25.0% |
| !!! | ACCTTTATTTTGATGCCTTT+TGG | - | chr3_2:46875069-46875088 | None:intergenic | 30.0% |
| AAACATTACATAATGGCCAT+GGG | - | chr3_2:46875242-46875261 | None:intergenic | 30.0% | |
| AAAACATTACATAATGGCCA+TGG | - | chr3_2:46875243-46875262 | None:intergenic | 30.0% | |
| ! | TCATGTGGTTTTCGATTATA+AGG | - | chr3_2:46875600-46875619 | None:intergenic | 30.0% |
| TGTTCTATTTGGTTAGGTAT+CGG | - | chr3_2:46875755-46875774 | None:intergenic | 30.0% | |
| TTAGGATGTTCTATTTGGTT+AGG | - | chr3_2:46875761-46875780 | None:intergenic | 30.0% | |
| CTATGTTAGGATGTTCTATT+TGG | - | chr3_2:46875766-46875785 | None:intergenic | 30.0% | |
| TCTAGCATATCATCATTGTA+TGG | - | chr3_2:46875851-46875870 | None:intergenic | 30.0% | |
| AATTAATTTAATCCACCGAG+GGG | - | chr3_2:46875881-46875900 | None:intergenic | 30.0% | |
| CAAATTAATTTAATCCACCG+AGG | - | chr3_2:46875883-46875902 | None:intergenic | 30.0% | |
| ATCAAAAGAAAAGGAATGGA+GGG | - | chr3_2:46876357-46876376 | None:intergenic | 30.0% | |
| AAGCATCAAAAGAAAAGGAA+TGG | - | chr3_2:46876117-46876136 | None:intergenic | 30.0% | |
| ! | AGCTAAAGCATCAAAAGAAA+AGG | - | chr3_2:46876122-46876141 | None:intergenic | 30.0% |
| ATTCACATGTGATAAACCAA+AGG | + | chr3_2:46876222-46876241 | Msa0407840:intron | 30.0% | |
| ATTAAAGTAGTTGTGACCTT+TGG | - | chr3_2:46876241-46876260 | None:intergenic | 30.0% | |
| ! | TTTATGGTGTTTTCCAACAA+GGG | + | chr3_2:46876263-46876282 | Msa0407840:intron | 30.0% |
| ATCAAAAGAAAAGGAATGGA+GGG | + | chr3_2:46876357-46876376 | Msa0407840:intron | 30.0% | |
| ! | AATTACTCTAGTTTGAAGGT+AGG | + | chr3_2:46876443-46876462 | Msa0407840:intron | 30.0% |
| ACTAACCACAAAACTCTATA+TGG | - | chr3_2:46876523-46876542 | None:intergenic | 30.0% | |
| !! | ATATAGAGTTTTGTGGTTAG+TGG | + | chr3_2:46876522-46876541 | Msa0407840:intron | 30.0% |
| AAATCGAAATCAAAGCTAGT+TGG | - | chr3_2:46876571-46876590 | None:intergenic | 30.0% | |
| ! | GTAGTCCTTAAGAAGATTTT+CGG | + | chr3_2:46876600-46876619 | Msa0407840:intron | 30.0% |
| ! | TAGTCCTTAAGAAGATTTTC+GGG | + | chr3_2:46876601-46876620 | Msa0407840:intron | 30.0% |
| TCTCTGCAATATATATTGGT+AGG | - | chr3_2:46877130-46877149 | None:intergenic | 30.0% | |
| CCTTTCTCTGCAATATATAT+TGG | - | chr3_2:46877134-46877153 | None:intergenic | 30.0% | |
| CCAATATATATTGCAGAGAA+AGG | + | chr3_2:46877131-46877150 | Msa0407840:intron | 30.0% | |
| ACATGTTTGTATTCACCAAA+TGG | + | chr3_2:46877279-46877298 | Msa0407840:intron | 30.0% | |
| ! | TGACTGACACTATTTTACTT+TGG | + | chr3_2:46877710-46877729 | Msa0407840:intron | 30.0% |
| ! | GACTGACACTATTTTACTTT+GGG | + | chr3_2:46877711-46877730 | Msa0407840:intron | 30.0% |
| GTTTGTAGAATAAAGTGCAT+TGG | + | chr3_2:46877796-46877815 | Msa0407840:intron | 30.0% | |
| GTTAAGAAGAACCACATATA+TGG | + | chr3_2:46878028-46878047 | Msa0407840:CDS | 30.0% | |
| GTCTAACATGCAATTAAGAA+TGG | - | chr3_2:46878242-46878261 | None:intergenic | 30.0% | |
| !! | CAAAAAAAGTGTCATAGGTA+AGG | - | chr3_2:46878554-46878573 | None:intergenic | 30.0% |
| TAACTATGAATTAGCATGAC+CGG | + | chr3_2:46878581-46878600 | Msa0407840:intron | 30.0% | |
| ! | TACAATTTTACTCCTAGATC+AGG | - | chr3_2:46878812-46878831 | None:intergenic | 30.0% |
| !! | ACAAAATTGATTTGATCTCG+AGG | + | chr3_2:46878948-46878967 | Msa0407840:intron | 30.0% |
| GTTGCTTAAACAATGTCATT+AGG | - | chr3_2:46879363-46879382 | None:intergenic | 30.0% | |
| AATGCTAACAAATGTCTTCA+TGG | - | chr3_2:46879463-46879482 | None:intergenic | 30.0% | |
| AAATCAAAAAAAGAGGGAGA+AGG | + | chr3_2:46879607-46879626 | Msa0407840:CDS | 30.0% | |
| GAATTACAAGCAAAGAAAAG+TGG | + | chr3_2:46879781-46879800 | Msa0407840:CDS | 30.0% | |
| ! | TGAAAACACCATTTTACACA+TGG | + | chr3_2:46880026-46880045 | Msa0407840:CDS | 30.0% |
| !! | GCCAAAAGGCATCAAAATAA+AGG | + | chr3_2:46875065-46875084 | Msa0407840:CDS | 35.0% |
| ! | AGGTATTCCTGTCAAAGTTT+TGG | + | chr3_2:46875118-46875137 | Msa0407840:CDS | 35.0% |
| TTTGCATCCAAAACTTTGAC+AGG | - | chr3_2:46875128-46875147 | None:intergenic | 35.0% | |
| TTTGAAGACGTTGAAAACCA+AGG | + | chr3_2:46875182-46875201 | Msa0407840:CDS | 35.0% | |
| TTGCACTATTGGTATTGTCA+TGG | - | chr3_2:46875547-46875566 | None:intergenic | 35.0% | |
| AATAGTGCAACCATGTCAAA+GGG | + | chr3_2:46875557-46875576 | Msa0407840:intron | 35.0% | |
| TAGTATCCACGTGATCAATT+TGG | - | chr3_2:46875634-46875653 | None:intergenic | 35.0% | |
| ! | ATGATGATGCAGATGATGTT+TGG | - | chr3_2:46876077-46876096 | None:intergenic | 35.0% |
| CATCAAAAGAAAAGGAATGG+AGG | - | chr3_2:46876356-46876375 | None:intergenic | 35.0% | |
| !!! | TCTTTTGATGCTTTAGCTCT+TGG | + | chr3_2:46876124-46876143 | Msa0407840:intron | 35.0% |
| ! | GTTTATGGTGTTTTCCAACA+AGG | + | chr3_2:46876262-46876281 | Msa0407840:intron | 35.0% |
| TTTCTCAAGTTTACCCTTGT+TGG | - | chr3_2:46876279-46876298 | None:intergenic | 35.0% | |
| CATCAAAAGAAAAGGAATGG+AGG | + | chr3_2:46876356-46876375 | Msa0407840:intron | 35.0% | |
| !!! | TTTCTCCTTGTTTGTTTTGG+AGG | - | chr3_2:46876424-46876443 | None:intergenic | 35.0% |
| ! | ATGTGCCATATAGAGTTTTG+TGG | + | chr3_2:46876515-46876534 | Msa0407840:intron | 35.0% |
| CAAACCCGAAAATCTTCTTA+AGG | - | chr3_2:46876608-46876627 | None:intergenic | 35.0% | |
| !!! | CTTAAGAAGATTTTCGGGTT+TGG | + | chr3_2:46876606-46876625 | Msa0407840:intron | 35.0% |
| ! | TTTGGAGAAGGATGAGATTT+TGG | + | chr3_2:46876624-46876643 | Msa0407840:intron | 35.0% |
| ! | TTGGAGAAGGATGAGATTTT+GGG | + | chr3_2:46876625-46876644 | Msa0407840:intron | 35.0% |
| ATACGGAATTGCGACAAATT+AGG | + | chr3_2:46876700-46876719 | Msa0407840:intron | 35.0% | |
| TACGGAATTGCGACAAATTA+GGG | + | chr3_2:46876701-46876720 | Msa0407840:intron | 35.0% | |
| ! | GTTGATGAATAAGAAAAGGC+AGG | + | chr3_2:46877188-46877207 | Msa0407840:intron | 35.0% |
| TTCCATCAGCAAGAAAAAGA+TGG | + | chr3_2:46877312-46877331 | Msa0407840:intron | 35.0% | |
| CCTACCATTATGTTACTCAA+GGG | + | chr3_2:46877405-46877424 | Msa0407840:intron | 35.0% | |
| ATCTCCCTTGAGTAACATAA+TGG | - | chr3_2:46877412-46877431 | None:intergenic | 35.0% | |
| CATGTTGTCATGTAGTCTAT+TGG | + | chr3_2:46877593-46877612 | Msa0407840:intron | 35.0% | |
| ATGAACATAGCTCGATTGAT+AGG | - | chr3_2:46877689-46877708 | None:intergenic | 35.0% | |
| ! | AGAATGCTTAAAGAGTGCAA+CGG | + | chr3_2:46877862-46877881 | Msa0407840:intron | 35.0% |
| AAGAAGAACCACATATATGG+TGG | + | chr3_2:46878031-46878050 | Msa0407840:CDS | 35.0% | |
| AATTCCTTATACCGCATACA+TGG | + | chr3_2:46878078-46878097 | Msa0407840:CDS | 35.0% | |
| CTTGATGTCTGCAAAAAACT+TGG | - | chr3_2:46878149-46878168 | None:intergenic | 35.0% | |
| ! | TGTTCTTACTAGCTTCCATT+TGG | - | chr3_2:46878174-46878193 | None:intergenic | 35.0% |
| !! | CCTCTCAAAAAAAGTGTCAT+AGG | - | chr3_2:46878559-46878578 | None:intergenic | 35.0% |
| !!! | CCTATGACACTTTTTTTGAG+AGG | + | chr3_2:46878556-46878575 | Msa0407840:intron | 35.0% |
| ATACTGAACCAAATGTGGTT+TGG | - | chr3_2:46878754-46878773 | None:intergenic | 35.0% | |
| ! | AAACCACATTTGGTTCAGTA+TGG | + | chr3_2:46878753-46878772 | Msa0407840:intron | 35.0% |
| ! | AACCACATTTGGTTCAGTAT+GGG | + | chr3_2:46878754-46878773 | Msa0407840:intron | 35.0% |
| ! | ACAACTTTGTTTCCTGATCT+AGG | + | chr3_2:46878797-46878816 | Msa0407840:intron | 35.0% |
| TGAACCTCGTGATAAAATAG+AGG | + | chr3_2:46878867-46878886 | Msa0407840:intron | 35.0% | |
| GAACCTCGTGATAAAATAGA+GGG | + | chr3_2:46878868-46878887 | Msa0407840:intron | 35.0% | |
| ! | ATTCCCTCTATTTTATCACG+AGG | - | chr3_2:46878874-46878893 | None:intergenic | 35.0% |
| ! | TTTTTGACGGTAGCAAAAAG+TGG | + | chr3_2:46879679-46879698 | Msa0407840:CDS | 35.0% |
| ! | AAGTGGCGTAGTTGAAATTT+TGG | + | chr3_2:46879696-46879715 | Msa0407840:CDS | 35.0% |
| TATTTGCTTGCAGCAAAACA+TGG | + | chr3_2:46879820-46879839 | Msa0407840:CDS | 35.0% | |
| TTCAAGCACACTCATCATTT+CGG | - | chr3_2:46879851-46879870 | None:intergenic | 35.0% | |
| ! | CATCTTCAGAGTTAGTTTCA+TGG | - | chr3_2:46879894-46879913 | None:intergenic | 35.0% |
| !! | TTCTAGACTTAAGCTCTGAA+AGG | - | chr3_2:46879995-46880014 | None:intergenic | 35.0% |
| ATATGCAGCCATGTGTAAAA+TGG | - | chr3_2:46880037-46880056 | None:intergenic | 35.0% | |
| ACTCTTATGATACCTACCCA+TGG | + | chr3_2:46875223-46875242 | Msa0407840:intron | 40.0% | |
| ATTACATAATGGCCATGGGT+AGG | - | chr3_2:46875238-46875257 | None:intergenic | 40.0% | |
| !! | GTTTGATGGTGTTGTTGCTT+CGG | - | chr3_2:46875413-46875432 | None:intergenic | 40.0% |
| CTTTGACATGGTTGCACTAT+TGG | - | chr3_2:46875558-46875577 | None:intergenic | 40.0% | |
| CAATAGTGCAACCATGTCAA+AGG | + | chr3_2:46875556-46875575 | Msa0407840:intron | 40.0% | |
| ATCATGTTCACCCTTTGACA+TGG | - | chr3_2:46875570-46875589 | None:intergenic | 40.0% | |
| TATCCACGTGATCAATTTGG+AGG | - | chr3_2:46875631-46875650 | None:intergenic | 40.0% | |
| GGTTGTATGTTGACAGATGA+TGG | - | chr3_2:46875734-46875753 | None:intergenic | 40.0% | |
| ! | AGCTCTTGGCACAAGTTTTT+AGG | + | chr3_2:46876138-46876157 | Msa0407840:intron | 40.0% |
| ! | AAAAGGAATGGAGGGAGTAT+TGG | + | chr3_2:46876365-46876384 | Msa0407840:intron | 40.0% |
| CTCTACCTCCAAAACAAACA+AGG | + | chr3_2:46876416-46876435 | Msa0407840:intron | 40.0% | |
| !! | AGAGTTTTGTGGTTAGTGGT+TGG | + | chr3_2:46876526-46876545 | Msa0407840:intron | 40.0% |
| !! | GAGTTTTGTGGTTAGTGGTT+GGG | + | chr3_2:46876527-46876546 | Msa0407840:intron | 40.0% |
| !! | TTAGTGGTTGGGTTGAATGA+AGG | + | chr3_2:46876538-46876557 | Msa0407840:intron | 40.0% |
| !!! | AAGATTTTCGGGTTTGGAGA+AGG | + | chr3_2:46876612-46876631 | Msa0407840:intron | 40.0% |
| ! | TGGAGAAGGATGAGATTTTG+GGG | + | chr3_2:46876626-46876645 | Msa0407840:intron | 40.0% |
| CAAGCAATGATATTTCGACG+TGG | + | chr3_2:46877098-46877117 | Msa0407840:intron | 40.0% | |
| TGGAAACATGAGATGCCATT+TGG | - | chr3_2:46877297-46877316 | None:intergenic | 40.0% | |
| ! | TGCCATCTTTTTCTTGCTGA+TGG | - | chr3_2:46877317-46877336 | None:intergenic | 40.0% |
| ATGGCATACTCAGTCACTAT+TGG | + | chr3_2:46877331-46877350 | Msa0407840:intron | 40.0% | |
| TGGCATACTCAGTCACTATT+GGG | + | chr3_2:46877332-46877351 | Msa0407840:intron | 40.0% | |
| GCCTACCATTATGTTACTCA+AGG | + | chr3_2:46877404-46877423 | Msa0407840:intron | 40.0% | |
| CCCTTGAGTAACATAATGGT+AGG | - | chr3_2:46877408-46877427 | None:intergenic | 40.0% | |
| ! | GAATGCTTAAAGAGTGCAAC+GGG | + | chr3_2:46877863-46877882 | Msa0407840:intron | 40.0% |
| ! | AATGCTTAAAGAGTGCAACG+GGG | + | chr3_2:46877864-46877883 | Msa0407840:intron | 40.0% |
| AGAGTTGACCACCATATATG+TGG | - | chr3_2:46878042-46878061 | None:intergenic | 40.0% | |
| CAAACCATGTATGCGGTATA+AGG | - | chr3_2:46878085-46878104 | None:intergenic | 40.0% | |
| TATACCGCATACATGGTTTG+TGG | + | chr3_2:46878085-46878104 | Msa0407840:CDS | 40.0% | |
| ! | ATACCGCATACATGGTTTGT+GGG | + | chr3_2:46878086-46878105 | Msa0407840:CDS | 40.0% |
| TTTCCCACAAACCATGTATG+CGG | - | chr3_2:46878092-46878111 | None:intergenic | 40.0% | |
| ! | TAGTTGTGTATTGACACGTG+TGG | - | chr3_2:46878264-46878283 | None:intergenic | 40.0% |
| ! | TGAACCAAATGTGGTTTGGA+TGG | - | chr3_2:46878750-46878769 | None:intergenic | 40.0% |
| GGGAGAAGGAAATCAAGAAA+TGG | + | chr3_2:46879621-46879640 | Msa0407840:CDS | 40.0% | |
| !! | GTAAAGGCATCTGACAAGAA+AGG | + | chr3_2:46879736-46879755 | Msa0407840:CDS | 40.0% |
| TCAGAGCTTAAGTCTAGAAG+TGG | + | chr3_2:46879996-46880015 | Msa0407840:CDS | 40.0% | |
| !! | GAAAACTCTTGGAAGGTATC+TGG | + | chr3_2:46880072-46880091 | Msa0407840:CDS | 40.0% |
| AAATGATGTGGGACATCAAG+TGG | + | chr3_2:46880106-46880125 | Msa0407840:CDS | 40.0% | |
| !! | TTGGAGGCATCGTAATCATG+TGG | - | chr3_2:46875615-46875634 | None:intergenic | 45.0% |
| ATGCCTCCAAATTGATCACG+TGG | + | chr3_2:46875625-46875644 | Msa0407840:intron | 45.0% | |
| ATGCTAGATTGTGTACCCCT+CGG | + | chr3_2:46875863-46875882 | Msa0407840:intron | 45.0% | |
| ! | AGAGCTTGTGAAGGAGTGTA+TGG | - | chr3_2:46876400-46876419 | None:intergenic | 45.0% |
| TTTGGAGGTAGAGCTTGTGA+AGG | - | chr3_2:46876409-46876428 | None:intergenic | 45.0% | |
| !! | GACATGGGTGTTCTAAGAGA+TGG | + | chr3_2:46876743-46876762 | Msa0407840:intron | 45.0% |
| GATAGGACGTTGCACTATGT+AGG | - | chr3_2:46877672-46877691 | None:intergenic | 45.0% | |
| ! | ATGCTTAAAGAGTGCAACGG+GGG | + | chr3_2:46877865-46877884 | Msa0407840:intron | 45.0% |
| ! | AAATGTGGTTTGGATGGAGG+AGG | - | chr3_2:46878744-46878763 | None:intergenic | 45.0% |
| TCCTCCATCCAAACCACATT+TGG | + | chr3_2:46878743-46878762 | Msa0407840:intron | 45.0% | |
| ! | ACCAAATGTGGTTTGGATGG+AGG | - | chr3_2:46878747-46878766 | None:intergenic | 45.0% |
| AGCCCATACTGAACCAAATG+TGG | - | chr3_2:46878759-46878778 | None:intergenic | 45.0% | |
| !! | TTGGTTCAGTATGGGCTAGT+TGG | + | chr3_2:46878762-46878781 | Msa0407840:intron | 45.0% |
| !! | TGGTTCAGTATGGGCTAGTT+GGG | + | chr3_2:46878763-46878782 | Msa0407840:intron | 45.0% |
| TAGACAACCGCAAGTTGTTG+AGG | + | chr3_2:46879942-46879961 | Msa0407840:CDS | 45.0% | |
| AGACAACCGCAAGTTGTTGA+GGG | + | chr3_2:46879943-46879962 | Msa0407840:CDS | 45.0% | |
| ! | GAGTTTTCGTTGTCGATGCT+TGG | - | chr3_2:46880060-46880079 | None:intergenic | 45.0% |
| ! | GCATCGACAACGAAAACTCT+TGG | + | chr3_2:46880061-46880080 | Msa0407840:CDS | 45.0% |
| CGACAACGAAAACTCTTGGA+AGG | + | chr3_2:46880065-46880084 | Msa0407840:CDS | 45.0% | |
| GATGTCCCACATCATTTGCA+TGG | - | chr3_2:46880103-46880122 | None:intergenic | 45.0% | |
| GTGGGACATCAAGTGGTATA+AGG | + | chr3_2:46880113-46880132 | Msa0407840:CDS | 45.0% | |
| !!! | TTAAATTAATTTGAATTATA+AGG | + | chr3_2:46875890-46875909 | Msa0407840:intron | 5.0% |
| !!! | ATATTTTTTACTAATATATA+AGG | - | chr3_2:46878431-46878450 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTGAATAA+AGG | + | chr3_2:46878661-46878680 | Msa0407840:intron | 5.0% |
| AGGAGCTGAGGTTTGAACTG+TGG | - | chr3_2:46877652-46877671 | None:intergenic | 50.0% | |
| GTTGCACTATGTAGGAGCTG+AGG | - | chr3_2:46877664-46877683 | None:intergenic | 50.0% | |
| GTCCTTAACCAGTGCTCTGA+GGG | - | chr3_2:46877752-46877771 | None:intergenic | 50.0% | |
| AGTCCTTAACCAGTGCTCTG+AGG | - | chr3_2:46877753-46877772 | None:intergenic | 50.0% | |
| TGCAGACATCAAGCGCCAAA+TGG | + | chr3_2:46878156-46878175 | Msa0407840:CDS | 50.0% | |
| !! | TATGGGCTAGTTGGGTCAAG+TGG | + | chr3_2:46878771-46878790 | Msa0407840:intron | 50.0% |
| GACAACCGCAAGTTGTTGAG+GGG | + | chr3_2:46879944-46879963 | Msa0407840:CDS | 50.0% | |
| CACAACCCCTCAACAACTTG+CGG | - | chr3_2:46879952-46879971 | None:intergenic | 50.0% | |
| GCAAGTTGTTGAGGGGTTGT+GGG | + | chr3_2:46879951-46879970 | Msa0407840:CDS | 50.0% | |
| GTTGTGGGAGAGGCTTTCTA+TGG | + | chr3_2:46879966-46879985 | Msa0407840:CDS | 50.0% | |
| !! | CTCTTGGAAGGTATCTGGTG+CGG | + | chr3_2:46880077-46880096 | Msa0407840:CDS | 50.0% |
| TGCGGCCATGCAAATGATGT+GGG | + | chr3_2:46880095-46880114 | Msa0407840:CDS | 50.0% | |
| CTAGATTGTGTACCCCTCGG+TGG | + | chr3_2:46875866-46875885 | Msa0407840:intron | 55.0% | |
| !! | TGCCCTCAGAGCACTGGTTA+AGG | + | chr3_2:46877747-46877766 | Msa0407840:intron | 55.0% |
| CGCAAGTTGTTGAGGGGTTG+TGG | + | chr3_2:46879950-46879969 | Msa0407840:CDS | 55.0% | |
| TTGTTGAGGGGTTGTGGGAG+AGG | + | chr3_2:46879956-46879975 | Msa0407840:CDS | 55.0% | |
| GTGCGGCCATGCAAATGATG+TGG | + | chr3_2:46880094-46880113 | Msa0407840:CDS | 55.0% | |
| AACCAGTGCCCTCAGAGCAC+TGG | + | chr3_2:46877741-46877760 | Msa0407840:intron | 60.0% | |
| !! | AACCAGTGCTCTGAGGGCAC+TGG | - | chr3_2:46877746-46877765 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 46875041 | 46880140 | 46875041 | ID=Msa0407840;Name=Msa0407840 |
| chr3_2 | mRNA | 46875041 | 46880140 | 46875041 | ID=Msa0407840-mRNA-1;Parent=Msa0407840;Name=Msa0407840-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.66|1|1|3|0|295 |
| chr3_2 | exon | 46875041 | 46875203 | 46875041 | ID=Msa0407840-mRNA-1:exon:9026;Parent=Msa0407840-mRNA-1 |
| chr3_2 | exon | 46878008 | 46878184 | 46878008 | ID=Msa0407840-mRNA-1:exon:9027;Parent=Msa0407840-mRNA-1 |
| chr3_2 | exon | 46879593 | 46880140 | 46879593 | ID=Msa0407840-mRNA-1:exon:9028;Parent=Msa0407840-mRNA-1 |
| chr3_2 | CDS | 46875041 | 46875203 | 46875041 | ID=Msa0407840-mRNA-1:cds;Parent=Msa0407840-mRNA-1 |
| chr3_2 | CDS | 46878008 | 46878184 | 46878008 | ID=Msa0407840-mRNA-1:cds;Parent=Msa0407840-mRNA-1 |
| chr3_2 | CDS | 46879593 | 46880140 | 46879593 | ID=Msa0407840-mRNA-1:cds;Parent=Msa0407840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
