Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495380 | XP_024634879.1 | 69.355 | 248 | 64 | 4 | 39 | 277 | 332 | 576 | 3.59e-102 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495380 | G7J1X5 | 69.547 | 243 | 53 | 5 | 39 | 276 | 306 | 532 | 3.90e-98 | 313 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0407840 | Msa0495380 | 0.867621 | 1.195713e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0495380 | MtrunA17_Chr3g0098301 | 69.058 | 223 | 48 | 5 | 60 | 277 | 1 | 207 | 5.28e-94 | 283 |
| Msa0495380 | MtrunA17_Chr3g0098481 | 77.305 | 141 | 31 | 1 | 138 | 277 | 1 | 141 | 8.71e-71 | 221 |
| Msa0495380 | MtrunA17_Chr3g0098531 | 80.645 | 93 | 18 | 0 | 185 | 277 | 1 | 93 | 3.72e-47 | 159 |
| Msa0495380 | MtrunA17_Chr5g0439041 | 46.903 | 113 | 55 | 2 | 170 | 278 | 58 | 169 | 2.04e-28 | 108 |
| Msa0495380 | MtrunA17_Chr5g0439061 | 44.954 | 109 | 57 | 2 | 171 | 277 | 435 | 542 | 1.06e-22 | 97.4 |
| Msa0495380 | MtrunA17_Chr3g0102001 | 28.276 | 290 | 127 | 8 | 9 | 277 | 317 | 546 | 9.11e-22 | 94.7 |
| Msa0495380 | MtrunA17_Chr2g0286601 | 39.048 | 105 | 60 | 2 | 174 | 278 | 391 | 491 | 1.73e-16 | 79.3 |
| Msa0495380 | MtrunA17_Chr2g0286551 | 38.095 | 105 | 61 | 2 | 174 | 278 | 371 | 471 | 1.87e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATGGTCTTTATAAATTT+TGG | 0.128398 | 3_4:+24533453 | Msa0495380:exon |
| AAGTGGCGTAGTTGAAATTT+TGG | 0.236991 | 3_4:+24538067 | Msa0495380:CDS |
| AGGTATTCCTGTCAAAGTTT+TGG | 0.292657 | 3_4:+24533482 | Msa0495380:CDS |
| CAAACCATGTATGCGGTATA+AGG | 0.328614 | 3_4:-24536447 | None:intergenic |
| CATCTTCAGAGTTAGTTTCA+TGG | 0.336064 | 3_4:-24538262 | None:intergenic |
| CGCAAGTTGTTGAGGGGTTG+TGG | 0.348606 | 3_4:+24538321 | Msa0495380:CDS |
| TTCAAGCACACTCATCATTT+CGG | 0.354541 | 3_4:-24538219 | None:intergenic |
| ATCAAGTGGTATAAGGTATA+AGG | 0.361769 | 3_4:+24538491 | Msa0495380:CDS |
| GTGGGACATCAAGTGGTATA+AGG | 0.386998 | 3_4:+24538484 | Msa0495380:CDS |
| TTGTTGAGGGGTTGTGGGAG+AGG | 0.395189 | 3_4:+24538327 | Msa0495380:CDS |
| GTTAAGAAGAACCACATATA+TGG | 0.395606 | 3_4:+24536393 | Msa0495380:CDS |
| GAAAACTCTTGGAAGGTATC+TGG | 0.399144 | 3_4:+24538443 | Msa0495380:CDS |
| GCCAAAAGGCATCAAAATAA+AGG | 0.405468 | 3_4:+24533429 | Msa0495380:five_prime_UTR |
| GTTGTGGGAGAGGCTTTCTA+TGG | 0.410974 | 3_4:+24538337 | Msa0495380:CDS |
| CTTATTACTTGTAGAAATGA+AGG | 0.412792 | 3_4:+24538130 | Msa0495380:CDS |
| TTCATTTCTTCTTTATCAAA+GGG | 0.416928 | 3_4:-24536480 | None:intergenic |
| TGTTCTTACTAGCTTCCATT+TGG | 0.435951 | 3_4:-24536536 | None:intergenic |
| GCATCAAAATAAAGGTCTAA+TGG | 0.442862 | 3_4:+24533437 | Msa0495380:exon |
| AGAGCTTAATTTAAAAGTAA+AGG | 0.446639 | 3_4:+24538091 | Msa0495380:CDS |
| TTTCATTTCTTCTTTATCAA+AGG | 0.446640 | 3_4:-24536481 | None:intergenic |
| GGGAGAAGGAAATCAAGAAA+TGG | 0.450021 | 3_4:+24537992 | Msa0495380:CDS |
| TTTGCATCCAAAACTTTGAC+AGG | 0.450345 | 3_4:-24533489 | None:intergenic |
| ATATGCAGCCATGTGTAAAA+TGG | 0.451379 | 3_4:-24538405 | None:intergenic |
| GCATCGACAACGAAAACTCT+TGG | 0.474914 | 3_4:+24538432 | Msa0495380:CDS |
| AGATGAAAATGCATTACATA+TGG | 0.493353 | 3_4:+24538280 | Msa0495380:CDS |
| AATTCCTTATACCGCATACA+TGG | 0.502973 | 3_4:+24536443 | Msa0495380:CDS |
| GCAAGTTGTTGAGGGGTTGT+GGG | 0.506150 | 3_4:+24538322 | Msa0495380:CDS |
| CAAAAGAAAAGTTCATAAAG+AGG | 0.513081 | 3_4:+24533328 | None:intergenic |
| ATACCGCATACATGGTTTGT+GGG | 0.513187 | 3_4:+24536451 | Msa0495380:CDS |
| TATACCGCATACATGGTTTG+TGG | 0.514137 | 3_4:+24536450 | Msa0495380:CDS |
| TGCAGACATCAAGCGCCAAA+TGG | 0.520081 | 3_4:+24536521 | Msa0495380:CDS |
| GTAAAGGCATCTGACAAGAA+AGG | 0.522807 | 3_4:+24538107 | Msa0495380:CDS |
| AGACAACCGCAAGTTGTTGA+GGG | 0.537910 | 3_4:+24538314 | Msa0495380:CDS |
| TTCTAGACTTAAGCTCTGAA+AGG | 0.540002 | 3_4:-24538363 | None:intergenic |
| TAGACAACCGCAAGTTGTTG+AGG | 0.551855 | 3_4:+24538313 | Msa0495380:CDS |
| GATGTCCCACATCATTTGCA+TGG | 0.565189 | 3_4:-24538471 | None:intergenic |
| TCAGAGCTTAAGTCTAGAAG+TGG | 0.566023 | 3_4:+24538367 | Msa0495380:CDS |
| TATTTGCTTGCAGCAAAACA+TGG | 0.566438 | 3_4:+24538191 | Msa0495380:CDS |
| CACAACCCCTCAACAACTTG+CGG | 0.571050 | 3_4:-24538320 | None:intergenic |
| CGACAACGAAAACTCTTGGA+AGG | 0.585282 | 3_4:+24538436 | Msa0495380:CDS |
| AGAGTTGACCACCATATATG+TGG | 0.592664 | 3_4:-24536404 | None:intergenic |
| GAATTACAAGCAAAGAAAAG+TGG | 0.611961 | 3_4:+24538152 | Msa0495380:CDS |
| GTGCGGCCATGCAAATGATG+TGG | 0.618816 | 3_4:+24538465 | Msa0495380:CDS |
| CTCTTGGAAGGTATCTGGTG+CGG | 0.625717 | 3_4:+24538448 | Msa0495380:CDS |
| TTTGAAGACGTTGAAAACCA+AGG | 0.637372 | 3_4:+24533546 | Msa0495380:CDS |
| GACAACCGCAAGTTGTTGAG+GGG | 0.642150 | 3_4:+24538315 | Msa0495380:CDS |
| TGCGGCCATGCAAATGATGT+GGG | 0.663238 | 3_4:+24538466 | Msa0495380:CDS |
| AAGAAGAACCACATATATGG+TGG | 0.671892 | 3_4:+24536396 | Msa0495380:CDS |
| AAATGATGTGGGACATCAAG+TGG | 0.682623 | 3_4:+24538477 | Msa0495380:CDS |
| TTTCCCACAAACCATGTATG+CGG | 0.705823 | 3_4:-24536454 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTCGTAAATAAAT+TGG | + | chr3_4:24533656-24533675 | Msa0495380:intron | 10.0% |
| !!! | TTTATTATCGTTTTTTATTT+TGG | - | chr3_4:24533799-24533818 | None:intergenic | 10.0% |
| !! | AAAATAATACAAATGAATTA+AGG | - | chr3_4:24535188-24535207 | None:intergenic | 10.0% |
| !! | TGCTAAATTATTTAAAAATA+AGG | - | chr3_4:24535432-24535451 | None:intergenic | 10.0% |
| !! | ATTATATCATGTAAAATTAA+AGG | - | chr3_4:24535741-24535760 | None:intergenic | 10.0% |
| !!! | TAATTTTAGTAAAAGTAAAA+GGG | - | chr3_4:24536271-24536290 | None:intergenic | 10.0% |
| !!! | ATAATTTTAGTAAAAGTAAA+AGG | - | chr3_4:24536272-24536291 | None:intergenic | 10.0% |
| !! | TTATATTATACATTAAGTAT+TGG | + | chr3_4:24537364-24537383 | Msa0495380:intron | 10.0% |
| !!! | CTTCTTTAATTTTTTTTTAA+TGG | - | chr3_4:24537895-24537914 | None:intergenic | 10.0% |
| !! | AAAAAATAAATCAAAAAAAG+AGG | + | chr3_4:24537971-24537990 | Msa0495380:CDS | 10.0% |
| !! | AAAAATAAATCAAAAAAAGA+GGG | + | chr3_4:24537972-24537991 | Msa0495380:CDS | 10.0% |
| !!! | TTTATAAATTTTGGTGTTAA+AGG | + | chr3_4:24533462-24533481 | Msa0495380:CDS | 15.0% |
| !! | AATTACAAAACATTACATAA+TGG | - | chr3_4:24533613-24533632 | None:intergenic | 15.0% |
| !!! | TAAATTGGTTTTTTTCTAAA+AGG | + | chr3_4:24533671-24533690 | Msa0495380:intron | 15.0% |
| !! | TGTGAATTTAATGATAAATA+AGG | - | chr3_4:24534573-24534592 | None:intergenic | 15.0% |
| !!! | ATTTTACATGATATAATTTG+TGG | + | chr3_4:24535744-24535763 | Msa0495380:intron | 15.0% |
| !!! | ATATGACAATTTTGTAAAAT+AGG | - | chr3_4:24537424-24537443 | None:intergenic | 15.0% |
| !! | GACAAAAAAAATCAAAATTA+TGG | - | chr3_4:24537697-24537716 | None:intergenic | 15.0% |
| !!! | AATTTTGATTTTTTTTGTCT+TGG | + | chr3_4:24537698-24537717 | Msa0495380:intron | 15.0% |
| !!! | TAGTAACTTTTATATGTATT+TGG | - | chr3_4:24537790-24537809 | None:intergenic | 15.0% |
| !! | GAGAAAGATATAAAAAAAAT+AGG | - | chr3_4:24537859-24537878 | None:intergenic | 15.0% |
| !!! | TCATGTCTTTTGAAATATAA+AGG | + | chr3_4:24533379-24533398 | Msa0495380:five_prime_UTR | 20.0% |
| !!! | CTAATGGTCTTTATAAATTT+TGG | + | chr3_4:24533453-24533472 | Msa0495380:exon | 20.0% |
| !! | ATTACTCATAAATATTTGAG+TGG | + | chr3_4:24533831-24533850 | Msa0495380:intron | 20.0% |
| !! | TTTATAGGTTTGATATCTTA+TGG | - | chr3_4:24534056-24534075 | None:intergenic | 20.0% |
| !! | AAGATATCAAACCTATAAAT+TGG | + | chr3_4:24534057-24534076 | Msa0495380:intron | 20.0% |
| !! | ATAACAAGAAAACAAATGTT+TGG | + | chr3_4:24534165-24534184 | Msa0495380:intron | 20.0% |
| !!! | TCAAATTTTGAAATTGTATC+AGG | - | chr3_4:24534361-24534380 | None:intergenic | 20.0% |
| !! | ACAACTACTTTAATAGTTTA+TGG | + | chr3_4:24534611-24534630 | Msa0495380:intron | 20.0% |
| !!! | ATGTTTGTAATTTTGTAAGT+TGG | + | chr3_4:24534838-24534857 | Msa0495380:intron | 20.0% |
| !!! | AACTACATTTAAGTTTCATA+CGG | + | chr3_4:24535047-24535066 | Msa0495380:intron | 20.0% |
| !! | AAGTTGAGTAATCTTATAAA+AGG | + | chr3_4:24535395-24535414 | Msa0495380:intron | 20.0% |
| !!! | TTTTGCAACATTAAATCAAT+AGG | - | chr3_4:24535849-24535868 | None:intergenic | 20.0% |
| !! | GATTGTTCACTTAATTTATA+AGG | - | chr3_4:24535995-24536014 | None:intergenic | 20.0% |
| !!! | TGAAAACTTTGACATTTTTA+TGG | + | chr3_4:24536188-24536207 | Msa0495380:intron | 20.0% |
| !! | GTAATGTCAACTTATAATAA+AGG | - | chr3_4:24536297-24536316 | None:intergenic | 20.0% |
| !!! | TAATTAATTTTGCAGACTTA+AGG | + | chr3_4:24536358-24536377 | Msa0495380:intron | 20.0% |
| !!! | AATTAATTTTGCAGACTTAA+GGG | + | chr3_4:24536359-24536378 | Msa0495380:intron | 20.0% |
| !! | TTCATTTCTTCTTTATCAAA+GGG | - | chr3_4:24536483-24536502 | None:intergenic | 20.0% |
| !! | TTTCATTTCTTCTTTATCAA+AGG | - | chr3_4:24536484-24536503 | None:intergenic | 20.0% |
| !! | ATCAAATTAAACTTACTAAC+CGG | - | chr3_4:24536973-24536992 | None:intergenic | 20.0% |
| !! | GAATATTATACATTAAGCAT+AGG | + | chr3_4:24537261-24537280 | Msa0495380:intron | 20.0% |
| !! | AATAATAGTGTTGTATTAGA+AGG | + | chr3_4:24537390-24537409 | Msa0495380:intron | 20.0% |
| !! | AGAGCTTAATTTAAAAGTAA+AGG | + | chr3_4:24538091-24538110 | Msa0495380:CDS | 20.0% |
| !!! | TTGTTTACTTTTATGCCAAA+AGG | + | chr3_4:24533415-24533434 | Msa0495380:five_prime_UTR | 25.0% |
| ! | AATTCATTGAAAACTTACCT+TGG | - | chr3_4:24533566-24533585 | None:intergenic | 25.0% |
| ! | CACAGATTAAAAAGATACAA+TGG | + | chr3_4:24533730-24533749 | Msa0495380:intron | 25.0% |
| ! | ATGGTCAAATATTACAGAAA+AGG | + | chr3_4:24533749-24533768 | Msa0495380:intron | 25.0% |
| !!! | CGTTTTTTATTTTGGTTTGA+TGG | - | chr3_4:24533791-24533810 | None:intergenic | 25.0% |
| !! | TGGATTAAGTCTAAAGTTAA+TGG | - | chr3_4:24533891-24533910 | None:intergenic | 25.0% |
| ! | TTTAATGCTGTCCAATTTAT+AGG | - | chr3_4:24534071-24534090 | None:intergenic | 25.0% |
| ! | TATTACTGCTTAACTATGTT+AGG | - | chr3_4:24534143-24534162 | None:intergenic | 25.0% |
| ! | AAATTAATTTAATCCACCGA+GGG | - | chr3_4:24534246-24534265 | None:intergenic | 25.0% |
| ! | GTCTAAGTAACTCTAAATAA+AGG | + | chr3_4:24534331-24534350 | Msa0495380:intron | 25.0% |
| ! | CATAAAAGAAGTTTATGTGT+TGG | - | chr3_4:24534386-24534405 | None:intergenic | 25.0% |
| !! | CAACACATAAACTTCTTTTA+TGG | + | chr3_4:24534384-24534403 | Msa0495380:intron | 25.0% |
| !! | CACTAAAACATCAAAAGTTT+TGG | + | chr3_4:24534676-24534695 | Msa0495380:intron | 25.0% |
| !!! | CTCTAAAACATCAAAAGAAA+AGG | + | chr3_4:24534712-24534731 | Msa0495380:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | + | chr3_4:24534717-24534736 | Msa0495380:intron | 25.0% |
| !!! | AATTTTCTCCTTGTTTGTTT+TGG | - | chr3_4:24534791-24534810 | None:intergenic | 25.0% |
| !! | AGAAAATTACTCTAGTTTGA+AGG | + | chr3_4:24534803-24534822 | Msa0495380:intron | 25.0% |
| !!! | TTGATTTCGATTTTAGCAAA+TGG | + | chr3_4:24534942-24534961 | Msa0495380:intron | 25.0% |
| ! | AAATTATTCAATTTGCGACA+TGG | + | chr3_4:24535091-24535110 | Msa0495380:intron | 25.0% |
| ! | AATTATTCAATTTGCGACAT+GGG | + | chr3_4:24535092-24535111 | Msa0495380:intron | 25.0% |
| ! | TATTCATCAACATTGTGTAA+TGG | - | chr3_4:24535541-24535560 | None:intergenic | 25.0% |
| !! | CAATGTTGATGAATAAGAAA+AGG | + | chr3_4:24535546-24535565 | Msa0495380:intron | 25.0% |
| ! | TGTAACATAAAATCTTAGCA+CGG | - | chr3_4:24535615-24535634 | None:intergenic | 25.0% |
| ! | AAATGTTTGTATTCACCAAA+TGG | + | chr3_4:24535641-24535660 | Msa0495380:intron | 25.0% |
| !!! | ATTTTTTTTGTCTTGGTAAC+AGG | + | chr3_4:24537705-24537724 | Msa0495380:intron | 25.0% |
| ! | CATATTCTGTATATTTGTAG+AGG | + | chr3_4:24537944-24537963 | Msa0495380:intron | 25.0% |
| !! | AAAAGATACGACATTTTTGA+CGG | + | chr3_4:24538037-24538056 | Msa0495380:CDS | 25.0% |
| ! | CTTATTACTTGTAGAAATGA+AGG | + | chr3_4:24538130-24538149 | Msa0495380:CDS | 25.0% |
| ! | AGATGAAAATGCATTACATA+TGG | + | chr3_4:24538280-24538299 | Msa0495380:CDS | 25.0% |
| !!! | ACCTTTATTTTGATGCCTTT+TGG | - | chr3_4:24533433-24533452 | None:intergenic | 30.0% |
| GCATCAAAATAAAGGTCTAA+TGG | + | chr3_4:24533437-24533456 | Msa0495380:exon | 30.0% | |
| AAACATTACATAATGGCCAT+GGG | - | chr3_4:24533606-24533625 | None:intergenic | 30.0% | |
| AAAACATTACATAATGGCCA+TGG | - | chr3_4:24533607-24533626 | None:intergenic | 30.0% | |
| ! | TCATGTGGTTTTCGATTATA+AGG | - | chr3_4:24533964-24533983 | None:intergenic | 30.0% |
| TGTTCTATTTGGTTAGGTAT+CGG | - | chr3_4:24534119-24534138 | None:intergenic | 30.0% | |
| TTAGGATGTTCTATTTGGTT+AGG | - | chr3_4:24534125-24534144 | None:intergenic | 30.0% | |
| CTATGTTAGGATGTTCTATT+TGG | - | chr3_4:24534130-24534149 | None:intergenic | 30.0% | |
| TCTAGCATATCATCATTGTA+TGG | - | chr3_4:24534215-24534234 | None:intergenic | 30.0% | |
| AATTAATTTAATCCACCGAG+GGG | - | chr3_4:24534245-24534264 | None:intergenic | 30.0% | |
| CAAATTAATTTAATCCACCG+AGG | - | chr3_4:24534247-24534266 | None:intergenic | 30.0% | |
| ATCAAAAGAAAAGGAATGGA+GGG | - | chr3_4:24534721-24534740 | None:intergenic | 30.0% | |
| AAGCATCAAAAGAAAAGGAA+TGG | - | chr3_4:24534481-24534500 | None:intergenic | 30.0% | |
| ! | AGCTAAAGCATCAAAAGAAA+AGG | - | chr3_4:24534486-24534505 | None:intergenic | 30.0% |
| ATTCACATGTGATAAACCAA+AGG | + | chr3_4:24534586-24534605 | Msa0495380:intron | 30.0% | |
| ATTAAAGTAGTTGTGACCTT+TGG | - | chr3_4:24534605-24534624 | None:intergenic | 30.0% | |
| ! | TTTATGGTGTTTTCCAACAA+GGG | + | chr3_4:24534627-24534646 | Msa0495380:intron | 30.0% |
| ATCAAAAGAAAAGGAATGGA+GGG | + | chr3_4:24534721-24534740 | Msa0495380:intron | 30.0% | |
| ! | AATTACTCTAGTTTGAAGGT+AGG | + | chr3_4:24534807-24534826 | Msa0495380:intron | 30.0% |
| ACTAACCACAAAACTCTATA+TGG | - | chr3_4:24534887-24534906 | None:intergenic | 30.0% | |
| !! | ATATAGAGTTTTGTGGTTAG+TGG | + | chr3_4:24534886-24534905 | Msa0495380:intron | 30.0% |
| AAATCGAAATCAAAGCTAGT+TGG | - | chr3_4:24534935-24534954 | None:intergenic | 30.0% | |
| ! | GTAGTCCTTAAGAAGATTTT+CGG | + | chr3_4:24534964-24534983 | Msa0495380:intron | 30.0% |
| ! | TAGTCCTTAAGAAGATTTTC+GGG | + | chr3_4:24534965-24534984 | Msa0495380:intron | 30.0% |
| TCTCTGCAATATATATTGGT+AGG | - | chr3_4:24535492-24535511 | None:intergenic | 30.0% | |
| CCTTTCTCTGCAATATATAT+TGG | - | chr3_4:24535496-24535515 | None:intergenic | 30.0% | |
| CCAATATATATTGCAGAGAA+AGG | + | chr3_4:24535493-24535512 | Msa0495380:intron | 30.0% | |
| ! | TGACTGACACTATTTTACTT+TGG | + | chr3_4:24536075-24536094 | Msa0495380:intron | 30.0% |
| ! | GACTGACACTATTTTACTTT+GGG | + | chr3_4:24536076-24536095 | Msa0495380:intron | 30.0% |
| GTTTGTAGAATAAAGTGCAT+TGG | + | chr3_4:24536161-24536180 | Msa0495380:intron | 30.0% | |
| GTTAAGAAGAACCACATATA+TGG | + | chr3_4:24536393-24536412 | Msa0495380:CDS | 30.0% | |
| GTCTAACATGCAATTAAGAA+TGG | - | chr3_4:24536607-24536626 | None:intergenic | 30.0% | |
| !! | CAAAAAAAGTGTCATAGGTA+AGG | - | chr3_4:24536924-24536943 | None:intergenic | 30.0% |
| TAACTATGAATTAGCATGAC+CGG | + | chr3_4:24536951-24536970 | Msa0495380:intron | 30.0% | |
| ! | TACAATTTTACTCCTAGATC+AGG | - | chr3_4:24537183-24537202 | None:intergenic | 30.0% |
| !! | ACAAAATTGATTTGATCTCG+AGG | + | chr3_4:24537319-24537338 | Msa0495380:intron | 30.0% |
| GTTGCTTAAACAATGTCATT+AGG | - | chr3_4:24537734-24537753 | None:intergenic | 30.0% | |
| AATGCTAACAAATGTCTTCA+GGG | - | chr3_4:24537834-24537853 | None:intergenic | 30.0% | |
| AAATGCTAACAAATGTCTTC+AGG | - | chr3_4:24537835-24537854 | None:intergenic | 30.0% | |
| AAATCAAAAAAAGAGGGAGA+AGG | + | chr3_4:24537978-24537997 | Msa0495380:CDS | 30.0% | |
| GAATTACAAGCAAAGAAAAG+TGG | + | chr3_4:24538152-24538171 | Msa0495380:CDS | 30.0% | |
| ! | TGAAAACACCATTTTACACA+TGG | + | chr3_4:24538397-24538416 | Msa0495380:CDS | 30.0% |
| !! | GCCAAAAGGCATCAAAATAA+AGG | + | chr3_4:24533429-24533448 | Msa0495380:five_prime_UTR | 35.0% |
| ! | AGGTATTCCTGTCAAAGTTT+TGG | + | chr3_4:24533482-24533501 | Msa0495380:CDS | 35.0% |
| TTTGCATCCAAAACTTTGAC+AGG | - | chr3_4:24533492-24533511 | None:intergenic | 35.0% | |
| TTTGAAGACGTTGAAAACCA+AGG | + | chr3_4:24533546-24533565 | Msa0495380:CDS | 35.0% | |
| TTGCACTATTGGTATTGTCA+TGG | - | chr3_4:24533911-24533930 | None:intergenic | 35.0% | |
| AATAGTGCAACCATGTCAAA+GGG | + | chr3_4:24533921-24533940 | Msa0495380:intron | 35.0% | |
| TAGTATCCACGTGATCAATT+TGG | - | chr3_4:24533998-24534017 | None:intergenic | 35.0% | |
| ! | ATGATGATGCAGATGATGTT+TGG | - | chr3_4:24534441-24534460 | None:intergenic | 35.0% |
| CATCAAAAGAAAAGGAATGG+AGG | - | chr3_4:24534720-24534739 | None:intergenic | 35.0% | |
| !!! | TCTTTTGATGCTTTAGCTCT+TGG | + | chr3_4:24534488-24534507 | Msa0495380:intron | 35.0% |
| ! | GTTTATGGTGTTTTCCAACA+AGG | + | chr3_4:24534626-24534645 | Msa0495380:intron | 35.0% |
| TTTCTCAAGTTTACCCTTGT+TGG | - | chr3_4:24534643-24534662 | None:intergenic | 35.0% | |
| CATCAAAAGAAAAGGAATGG+AGG | + | chr3_4:24534720-24534739 | Msa0495380:intron | 35.0% | |
| !!! | TTTCTCCTTGTTTGTTTTGG+AGG | - | chr3_4:24534788-24534807 | None:intergenic | 35.0% |
| ! | ATGTGCCATATAGAGTTTTG+TGG | + | chr3_4:24534879-24534898 | Msa0495380:intron | 35.0% |
| CAAACCCGAAAATCTTCTTA+AGG | - | chr3_4:24534972-24534991 | None:intergenic | 35.0% | |
| !!! | CTTAAGAAGATTTTCGGGTT+TGG | + | chr3_4:24534970-24534989 | Msa0495380:intron | 35.0% |
| ! | TTTGGAGAAGGATGAGATTT+TGG | + | chr3_4:24534988-24535007 | Msa0495380:intron | 35.0% |
| ! | TTGGAGAAGGATGAGATTTT+GGG | + | chr3_4:24534989-24535008 | Msa0495380:intron | 35.0% |
| ATACGGAATTGCGACAAATT+AGG | + | chr3_4:24535064-24535083 | Msa0495380:intron | 35.0% | |
| TACGGAATTGCGACAAATTA+GGG | + | chr3_4:24535065-24535084 | Msa0495380:intron | 35.0% | |
| ! | GTTGATGAATAAGAAAAGGC+AGG | + | chr3_4:24535550-24535569 | Msa0495380:intron | 35.0% |
| TTCCATCAGCAAGAAAAAGA+TGG | + | chr3_4:24535674-24535693 | Msa0495380:intron | 35.0% | |
| CCTACCATTATGTTACTCAA+GGG | + | chr3_4:24535767-24535786 | Msa0495380:intron | 35.0% | |
| ATCTCCCTTGAGTAACATAA+TGG | - | chr3_4:24535774-24535793 | None:intergenic | 35.0% | |
| CATGTTGTCATGTAGTCTAT+TGG | + | chr3_4:24535958-24535977 | Msa0495380:intron | 35.0% | |
| ATGAACATAGCTCGATTGAT+AGG | - | chr3_4:24536054-24536073 | None:intergenic | 35.0% | |
| ! | AGAATGCTTAAAGAGTGCAA+CGG | + | chr3_4:24536227-24536246 | Msa0495380:intron | 35.0% |
| AAGAAGAACCACATATATGG+TGG | + | chr3_4:24536396-24536415 | Msa0495380:CDS | 35.0% | |
| AATTCCTTATACCGCATACA+TGG | + | chr3_4:24536443-24536462 | Msa0495380:CDS | 35.0% | |
| CTTGATGTCTGCAAAAAACT+TGG | - | chr3_4:24536514-24536533 | None:intergenic | 35.0% | |
| ! | TGTTCTTACTAGCTTCCATT+TGG | - | chr3_4:24536539-24536558 | None:intergenic | 35.0% |
| !! | CCTCTCAAAAAAAGTGTCAT+AGG | - | chr3_4:24536929-24536948 | None:intergenic | 35.0% |
| !!! | CCTATGACACTTTTTTTGAG+AGG | + | chr3_4:24536926-24536945 | Msa0495380:intron | 35.0% |
| ATACTGAACCAAATGTGGTT+TGG | - | chr3_4:24537125-24537144 | None:intergenic | 35.0% | |
| ! | AAACCACATTTGGTTCAGTA+TGG | + | chr3_4:24537124-24537143 | Msa0495380:intron | 35.0% |
| ! | AACCACATTTGGTTCAGTAT+GGG | + | chr3_4:24537125-24537144 | Msa0495380:intron | 35.0% |
| ! | ACAACTTTGTTTCCTGATCT+AGG | + | chr3_4:24537168-24537187 | Msa0495380:intron | 35.0% |
| TGAACCTCGTGATAAAATAG+AGG | + | chr3_4:24537238-24537257 | Msa0495380:intron | 35.0% | |
| GAACCTCGTGATAAAATAGA+GGG | + | chr3_4:24537239-24537258 | Msa0495380:intron | 35.0% | |
| ! | ATTCCCTCTATTTTATCACG+AGG | - | chr3_4:24537245-24537264 | None:intergenic | 35.0% |
| ! | TTTTTGACGGTAGCAAAAAG+TGG | + | chr3_4:24538050-24538069 | Msa0495380:CDS | 35.0% |
| ! | AAGTGGCGTAGTTGAAATTT+TGG | + | chr3_4:24538067-24538086 | Msa0495380:CDS | 35.0% |
| TATTTGCTTGCAGCAAAACA+TGG | + | chr3_4:24538191-24538210 | Msa0495380:CDS | 35.0% | |
| TTCAAGCACACTCATCATTT+CGG | - | chr3_4:24538222-24538241 | None:intergenic | 35.0% | |
| ! | CATCTTCAGAGTTAGTTTCA+TGG | - | chr3_4:24538265-24538284 | None:intergenic | 35.0% |
| !! | TTCTAGACTTAAGCTCTGAA+AGG | - | chr3_4:24538366-24538385 | None:intergenic | 35.0% |
| ATATGCAGCCATGTGTAAAA+TGG | - | chr3_4:24538408-24538427 | None:intergenic | 35.0% | |
| ACTCTTATGATACCTACCCA+TGG | + | chr3_4:24533587-24533606 | Msa0495380:intron | 40.0% | |
| ATTACATAATGGCCATGGGT+AGG | - | chr3_4:24533602-24533621 | None:intergenic | 40.0% | |
| !! | GTTTGATGGTGTTGTTGCTT+CGG | - | chr3_4:24533777-24533796 | None:intergenic | 40.0% |
| CTTTGACATGGTTGCACTAT+TGG | - | chr3_4:24533922-24533941 | None:intergenic | 40.0% | |
| CAATAGTGCAACCATGTCAA+AGG | + | chr3_4:24533920-24533939 | Msa0495380:intron | 40.0% | |
| ATCATGTTCACCCTTTGACA+TGG | - | chr3_4:24533934-24533953 | None:intergenic | 40.0% | |
| TATCCACGTGATCAATTTGG+AGG | - | chr3_4:24533995-24534014 | None:intergenic | 40.0% | |
| GGTTGTATGTTGACAGATGA+TGG | - | chr3_4:24534098-24534117 | None:intergenic | 40.0% | |
| ! | AGCTCTTGGCACAAGTTTTT+AGG | + | chr3_4:24534502-24534521 | Msa0495380:intron | 40.0% |
| ! | AAAAGGAATGGAGGGAGTAT+TGG | + | chr3_4:24534729-24534748 | Msa0495380:intron | 40.0% |
| CTCTACCTCCAAAACAAACA+AGG | + | chr3_4:24534780-24534799 | Msa0495380:intron | 40.0% | |
| !! | AGAGTTTTGTGGTTAGTGGT+TGG | + | chr3_4:24534890-24534909 | Msa0495380:intron | 40.0% |
| !! | GAGTTTTGTGGTTAGTGGTT+GGG | + | chr3_4:24534891-24534910 | Msa0495380:intron | 40.0% |
| !! | TTAGTGGTTGGGTTGAATGA+AGG | + | chr3_4:24534902-24534921 | Msa0495380:intron | 40.0% |
| !!! | AAGATTTTCGGGTTTGGAGA+AGG | + | chr3_4:24534976-24534995 | Msa0495380:intron | 40.0% |
| ! | TGGAGAAGGATGAGATTTTG+GGG | + | chr3_4:24534990-24535009 | Msa0495380:intron | 40.0% |
| CAAGCAATGATATTTCGACG+TGG | + | chr3_4:24535460-24535479 | Msa0495380:intron | 40.0% | |
| TGGAAACATGAGATGCCATT+TGG | - | chr3_4:24535659-24535678 | None:intergenic | 40.0% | |
| ! | TGCCATCTTTTTCTTGCTGA+TGG | - | chr3_4:24535679-24535698 | None:intergenic | 40.0% |
| ATGGCATACTCAGTCACTAT+TGG | + | chr3_4:24535693-24535712 | Msa0495380:intron | 40.0% | |
| TGGCATACTCAGTCACTATT+GGG | + | chr3_4:24535694-24535713 | Msa0495380:intron | 40.0% | |
| GCCTACCATTATGTTACTCA+AGG | + | chr3_4:24535766-24535785 | Msa0495380:intron | 40.0% | |
| CCCTTGAGTAACATAATGGT+AGG | - | chr3_4:24535770-24535789 | None:intergenic | 40.0% | |
| ! | GAATGCTTAAAGAGTGCAAC+GGG | + | chr3_4:24536228-24536247 | Msa0495380:intron | 40.0% |
| ! | AATGCTTAAAGAGTGCAACG+GGG | + | chr3_4:24536229-24536248 | Msa0495380:intron | 40.0% |
| AGAGTTGACCACCATATATG+TGG | - | chr3_4:24536407-24536426 | None:intergenic | 40.0% | |
| CAAACCATGTATGCGGTATA+AGG | - | chr3_4:24536450-24536469 | None:intergenic | 40.0% | |
| TATACCGCATACATGGTTTG+TGG | + | chr3_4:24536450-24536469 | Msa0495380:CDS | 40.0% | |
| ! | ATACCGCATACATGGTTTGT+GGG | + | chr3_4:24536451-24536470 | Msa0495380:CDS | 40.0% |
| TTTCCCACAAACCATGTATG+CGG | - | chr3_4:24536457-24536476 | None:intergenic | 40.0% | |
| ! | TGAACCAAATGTGGTTTGGA+TGG | - | chr3_4:24537121-24537140 | None:intergenic | 40.0% |
| GGGAGAAGGAAATCAAGAAA+TGG | + | chr3_4:24537992-24538011 | Msa0495380:CDS | 40.0% | |
| !! | GTAAAGGCATCTGACAAGAA+AGG | + | chr3_4:24538107-24538126 | Msa0495380:CDS | 40.0% |
| TCAGAGCTTAAGTCTAGAAG+TGG | + | chr3_4:24538367-24538386 | Msa0495380:CDS | 40.0% | |
| !! | GAAAACTCTTGGAAGGTATC+TGG | + | chr3_4:24538443-24538462 | Msa0495380:CDS | 40.0% |
| AAATGATGTGGGACATCAAG+TGG | + | chr3_4:24538477-24538496 | Msa0495380:CDS | 40.0% | |
| !! | TTGGAGGCATCGTAATCATG+TGG | - | chr3_4:24533979-24533998 | None:intergenic | 45.0% |
| ATGCCTCCAAATTGATCACG+TGG | + | chr3_4:24533989-24534008 | Msa0495380:intron | 45.0% | |
| ATGCTAGATTGTGTACCCCT+CGG | + | chr3_4:24534227-24534246 | Msa0495380:intron | 45.0% | |
| ! | AGAGCTTGTGAAGGAGTGTA+TGG | - | chr3_4:24534764-24534783 | None:intergenic | 45.0% |
| TTTGGAGGTAGAGCTTGTGA+AGG | - | chr3_4:24534773-24534792 | None:intergenic | 45.0% | |
| !! | GACATGGGTGTTCTAAGAGA+TGG | + | chr3_4:24535107-24535126 | Msa0495380:intron | 45.0% |
| GATAGGACGTTGCACTATGT+AGG | - | chr3_4:24536037-24536056 | None:intergenic | 45.0% | |
| ! | ATGCTTAAAGAGTGCAACGG+GGG | + | chr3_4:24536230-24536249 | Msa0495380:intron | 45.0% |
| ! | GTGTATTGACACGTGTGAAG+AGG | - | chr3_4:24536629-24536648 | None:intergenic | 45.0% |
| ! | AAATGTGGTTTGGATGGAGG+AGG | - | chr3_4:24537115-24537134 | None:intergenic | 45.0% |
| TCCTCCATCCAAACCACATT+TGG | + | chr3_4:24537114-24537133 | Msa0495380:intron | 45.0% | |
| ! | ACCAAATGTGGTTTGGATGG+AGG | - | chr3_4:24537118-24537137 | None:intergenic | 45.0% |
| AGCCCATACTGAACCAAATG+TGG | - | chr3_4:24537130-24537149 | None:intergenic | 45.0% | |
| !! | TTGGTTCAGTATGGGCTAGT+TGG | + | chr3_4:24537133-24537152 | Msa0495380:intron | 45.0% |
| !! | TGGTTCAGTATGGGCTAGTT+GGG | + | chr3_4:24537134-24537153 | Msa0495380:intron | 45.0% |
| TAGACAACCGCAAGTTGTTG+AGG | + | chr3_4:24538313-24538332 | Msa0495380:CDS | 45.0% | |
| AGACAACCGCAAGTTGTTGA+GGG | + | chr3_4:24538314-24538333 | Msa0495380:CDS | 45.0% | |
| ! | GAGTTTTCGTTGTCGATGCT+TGG | - | chr3_4:24538431-24538450 | None:intergenic | 45.0% |
| ! | GCATCGACAACGAAAACTCT+TGG | + | chr3_4:24538432-24538451 | Msa0495380:CDS | 45.0% |
| CGACAACGAAAACTCTTGGA+AGG | + | chr3_4:24538436-24538455 | Msa0495380:CDS | 45.0% | |
| GATGTCCCACATCATTTGCA+TGG | - | chr3_4:24538474-24538493 | None:intergenic | 45.0% | |
| GTGGGACATCAAGTGGTATA+AGG | + | chr3_4:24538484-24538503 | Msa0495380:CDS | 45.0% | |
| !!! | TTAAATTAATTTGAATTATA+AGG | + | chr3_4:24534254-24534273 | Msa0495380:intron | 5.0% |
| !!! | ATATTTTTTACTAATATATA+AGG | - | chr3_4:24536801-24536820 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTGAATAA+AGG | + | chr3_4:24537032-24537051 | Msa0495380:intron | 5.0% |
| AGGAGCTGAGGTTTGAACTG+TGG | - | chr3_4:24536017-24536036 | None:intergenic | 50.0% | |
| GTTGCACTATGTAGGAGCTG+AGG | - | chr3_4:24536029-24536048 | None:intergenic | 50.0% | |
| GTCCTTAACCAGTGCTCTGA+GGG | - | chr3_4:24536117-24536136 | None:intergenic | 50.0% | |
| AGTCCTTAACCAGTGCTCTG+AGG | - | chr3_4:24536118-24536137 | None:intergenic | 50.0% | |
| TGCAGACATCAAGCGCCAAA+TGG | + | chr3_4:24536521-24536540 | Msa0495380:CDS | 50.0% | |
| !! | TATGGGCTAGTTGGGTCAAG+TGG | + | chr3_4:24537142-24537161 | Msa0495380:intron | 50.0% |
| GACAACCGCAAGTTGTTGAG+GGG | + | chr3_4:24538315-24538334 | Msa0495380:CDS | 50.0% | |
| CACAACCCCTCAACAACTTG+CGG | - | chr3_4:24538323-24538342 | None:intergenic | 50.0% | |
| GCAAGTTGTTGAGGGGTTGT+GGG | + | chr3_4:24538322-24538341 | Msa0495380:CDS | 50.0% | |
| GTTGTGGGAGAGGCTTTCTA+TGG | + | chr3_4:24538337-24538356 | Msa0495380:CDS | 50.0% | |
| !! | CTCTTGGAAGGTATCTGGTG+CGG | + | chr3_4:24538448-24538467 | Msa0495380:CDS | 50.0% |
| TGCGGCCATGCAAATGATGT+GGG | + | chr3_4:24538466-24538485 | Msa0495380:CDS | 50.0% | |
| CTAGATTGTGTACCCCTCGG+TGG | + | chr3_4:24534230-24534249 | Msa0495380:intron | 55.0% | |
| !! | TGCCCTCAGAGCACTGGTTA+AGG | + | chr3_4:24536112-24536131 | Msa0495380:intron | 55.0% |
| CGCAAGTTGTTGAGGGGTTG+TGG | + | chr3_4:24538321-24538340 | Msa0495380:CDS | 55.0% | |
| TTGTTGAGGGGTTGTGGGAG+AGG | + | chr3_4:24538327-24538346 | Msa0495380:CDS | 55.0% | |
| GTGCGGCCATGCAAATGATG+TGG | + | chr3_4:24538465-24538484 | Msa0495380:CDS | 55.0% | |
| AACCAGTGCCCTCAGAGCAC+TGG | + | chr3_4:24536106-24536125 | Msa0495380:intron | 60.0% | |
| !! | AACCAGTGCTCTGAGGGCAC+TGG | - | chr3_4:24536111-24536130 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 24533336 | 24538511 | 24533336 | ID=Msa0495380;Name=Msa0495380 |
| chr3_4 | mRNA | 24533336 | 24538511 | 24533336 | ID=Msa0495380-mRNA-1;Parent=Msa0495380;Name=Msa0495380-mRNA-1;_AED=0.46;_eAED=0.46;_QI=120|0|0.33|0.66|1|1|3|0|278 |
| chr3_4 | exon | 24533336 | 24533567 | 24533336 | ID=Msa0495380-mRNA-1:exon:5933;Parent=Msa0495380-mRNA-1 |
| chr3_4 | exon | 24536373 | 24536549 | 24536373 | ID=Msa0495380-mRNA-1:exon:5934;Parent=Msa0495380-mRNA-1 |
| chr3_4 | exon | 24537964 | 24538511 | 24537964 | ID=Msa0495380-mRNA-1:exon:5935;Parent=Msa0495380-mRNA-1 |
| chr3_4 | five_prime_UTR | 24533336 | 24533455 | 24533336 | ID=Msa0495380-mRNA-1:five_prime_utr;Parent=Msa0495380-mRNA-1 |
| chr3_4 | CDS | 24533456 | 24533567 | 24533456 | ID=Msa0495380-mRNA-1:cds;Parent=Msa0495380-mRNA-1 |
| chr3_4 | CDS | 24536373 | 24536549 | 24536373 | ID=Msa0495380-mRNA-1:cds;Parent=Msa0495380-mRNA-1 |
| chr3_4 | CDS | 24537964 | 24538511 | 24537964 | ID=Msa0495380-mRNA-1:cds;Parent=Msa0495380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
