Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408330 | XP_013459798.1 | 98.404 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 2.95e-133 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408330 | sp|Q94JQ4|RIDA_ARATH | 65.079 | 189 | 60 | 3 | 3 | 188 | 2 | 187 | 4.13e-80 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408330 | I3SK73 | 98.404 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 1.41e-133 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0360930 | Msa0408330 | 0.848950 | 4.421658e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408330 | MtrunA17_Chr3g0098941 | 98.404 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 2.71e-137 | 380 |
| Msa0408330 | MtrunA17_Chr5g0444131 | 73.298 | 191 | 48 | 3 | 1 | 188 | 1 | 191 | 4.15e-96 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408330 | AT3G20390.1 | 65.079 | 189 | 60 | 3 | 3 | 188 | 2 | 187 | 4.20e-81 | 239 |
| Msa0408330 | AT3G20390.2 | 65.079 | 189 | 60 | 3 | 3 | 188 | 70 | 255 | 4.09e-80 | 239 |
Find 66 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCACCGGCGCGCTTCA+TGG | 0.245173 | 3_2:-47933153 | Msa0408330:CDS |
| GCTTCATGGGCCGCCGGAAT+CGG | 0.288598 | 3_2:-47933139 | Msa0408330:CDS |
| TAATTGCTCTTGTTTGTGTA+TGG | 0.330572 | 3_2:-47929961 | Msa0408330:three_prime_UTR |
| CTATTTGTCTCAGGTGTCCT+TGG | 0.335818 | 3_2:-47931701 | Msa0408330:CDS |
| TTCCAGGTTGGCTGACTTGA+AGG | 0.345750 | 3_2:-47930940 | Msa0408330:intron |
| TATGCACTCAATTTCAATCT+TGG | 0.362374 | 3_2:+47930248 | None:intergenic |
| AGAAAAGGCCCCAGCGGCAT+TGG | 0.366238 | 3_2:-47931759 | Msa0408330:CDS |
| TGGAGAACGGCGGCGTTGAT+TGG | 0.378595 | 3_2:+47933169 | None:intergenic |
| AACGGAGACTCCGCCGATTC+CGG | 0.378739 | 3_2:+47933126 | None:intergenic |
| GCTTTGATTGCTTGAGAATA+CGG | 0.405845 | 3_2:+47931734 | None:intergenic |
| CCAACTACTGGTGTTTACTT+TGG | 0.419612 | 3_2:-47930134 | Msa0408330:three_prime_UTR |
| GAAAAGGCCCCAGCGGCATT+GGG | 0.423615 | 3_2:-47931758 | Msa0408330:CDS |
| TCTCCACCGGCGCGCTTCAT+GGG | 0.434032 | 3_2:-47933152 | Msa0408330:CDS |
| ATCGGCGGAGTCTCCGTTGC+CGG | 0.444540 | 3_2:-47933121 | Msa0408330:CDS |
| GATAGTTCTATCGTAAAATC+AGG | 0.445373 | 3_2:-47930189 | Msa0408330:three_prime_UTR |
| CTTAACAACTGATGCATAGC+TGG | 0.447171 | 3_2:+47931054 | None:intergenic |
| TGAGACAAATAGAAGGTTGT+TGG | 0.447747 | 3_2:+47931712 | None:intergenic |
| TGAGCGCAACATGGCAGTGC+CGG | 0.462430 | 3_2:+47933102 | None:intergenic |
| AACAACCTTCTATTTGTCTC+AGG | 0.469075 | 3_2:-47931710 | Msa0408330:CDS |
| ACTTGATACGTCGCACGAGC+TGG | 0.469228 | 3_2:+47930291 | None:intergenic |
| CGAATCTAGTGAGAAAGAAA+TGG | 0.473075 | 3_2:-47933227 | Msa0408330:exon |
| GTAGTTGTTGAGTTTAACTT+TGG | 0.475445 | 3_2:+47933313 | None:intergenic |
| AAAATCAGGTCAAATAATAC+AGG | 0.481895 | 3_2:-47930175 | Msa0408330:three_prime_UTR |
| GCACGAGCTGGGGCAGGTGA+AGG | 0.482738 | 3_2:+47930303 | None:intergenic |
| CTTGATACGTCGCACGAGCT+GGG | 0.495903 | 3_2:+47930292 | None:intergenic |
| CGGCCCATGAAGCGCGCCGG+TGG | 0.502790 | 3_2:+47933149 | None:intergenic |
| GAATACGGTCCCAATGCCGC+TGG | 0.504483 | 3_2:+47931749 | None:intergenic |
| TCAACGCCGCCGTTCTCCAC+CGG | 0.508384 | 3_2:-47933165 | Msa0408330:CDS |
| CTCAGACACGAGGCAGTTCA+CGG | 0.509072 | 3_2:+47933250 | None:intergenic |
| AGAACGGCGGCGTTGATTGG+TGG | 0.520088 | 3_2:+47933172 | None:intergenic |
| CGGCGCGCTTCATGGGCCGC+CGG | 0.523403 | 3_2:-47933145 | Msa0408330:CDS |
| ATCAGTACACATCCAACTAC+TGG | 0.528346 | 3_2:-47930146 | Msa0408330:three_prime_UTR |
| CCAAAGTAAACACCAGTAGT+TGG | 0.529695 | 3_2:+47930134 | None:intergenic |
| TACGTCGCACGAGCTGGGGC+AGG | 0.534632 | 3_2:+47930297 | None:intergenic |
| CAACATGGCAGTGCCGGCAA+CGG | 0.534933 | 3_2:+47933108 | None:intergenic |
| TGTCCTTGGTCTTGTTCCAG+AGG | 0.537834 | 3_2:-47931687 | Msa0408330:intron |
| TGTTGAAGATCAGACTGAGC+AGG | 0.545352 | 3_2:-47931528 | Msa0408330:intron |
| AATACGGTCCCAATGCCGCT+GGG | 0.545961 | 3_2:+47931750 | None:intergenic |
| CGGCGGCCCATGAAGCGCGC+CGG | 0.548624 | 3_2:+47933146 | None:intergenic |
| GGACACCTGAGACAAATAGA+AGG | 0.553587 | 3_2:+47931705 | None:intergenic |
| TCATGGGCCGCCGGAATCGG+CGG | 0.556526 | 3_2:-47933136 | Msa0408330:CDS |
| TCAAGTAGCTGCCTTGCCGT+TGG | 0.560196 | 3_2:-47930274 | Msa0408330:CDS |
| GGAAGCTGTTCAGACAGAAA+AGG | 0.561997 | 3_2:-47931774 | Msa0408330:CDS |
| TGAAGCGCGCCGGTGGAGAA+CGG | 0.562145 | 3_2:+47933156 | None:intergenic |
| ATTTCAATCTTGGCATCCAA+CGG | 0.567118 | 3_2:+47930258 | None:intergenic |
| GGAAAGGCTTAAGCAAAGGA+AGG | 0.586489 | 3_2:+47933057 | None:intergenic |
| GGAGACTCCGCCGATTCCGG+CGG | 0.590150 | 3_2:+47933129 | None:intergenic |
| CAGTGGAAAGGCTTAAGCAA+AGG | 0.596253 | 3_2:+47933053 | None:intergenic |
| CGGCGTTGATTGGTGGAATG+TGG | 0.604191 | 3_2:+47933179 | None:intergenic |
| TGGCGTCATGGTGTGCAGCA+AGG | 0.608058 | 3_2:-47933207 | Msa0408330:CDS |
| GTGAGAAAGAAATGGCGTCA+TGG | 0.617536 | 3_2:-47933219 | Msa0408330:exon |
| GTTGATTGGTGGAATGTGGA+AGG | 0.619041 | 3_2:+47933183 | None:intergenic |
| GCAGACAGGGAAGTTTGTCT+CGG | 0.622133 | 3_2:-47931555 | Msa0408330:intron |
| AATCTTGGCATCCAACGGCA+AGG | 0.623839 | 3_2:+47930263 | None:intergenic |
| TGGGAACTTACGGGTATCAG+TGG | 0.629631 | 3_2:+47933036 | None:intergenic |
| TTGATACGTCGCACGAGCTG+GGG | 0.630943 | 3_2:+47930293 | None:intergenic |
| GAAAGGCTTAAGCAAAGGAA+GGG | 0.642611 | 3_2:+47933058 | None:intergenic |
| AGAAGAAGATGAGCGCAACA+TGG | 0.649681 | 3_2:+47933093 | None:intergenic |
| AGCGCGCCGGTGGAGAACGG+CGG | 0.660633 | 3_2:+47933159 | None:intergenic |
| ACTTACGGGTATCAGTGGAA+AGG | 0.665039 | 3_2:+47933041 | None:intergenic |
| ATACGGTCCCAATGCCGCTG+GGG | 0.665669 | 3_2:+47931751 | None:intergenic |
| ACTAGATTCGCTCAGACACG+AGG | 0.676893 | 3_2:+47933240 | None:intergenic |
| GGGGAGATCCTGAAATCTGG+GGG | 0.679110 | 3_2:-47931079 | Msa0408330:CDS |
| TCAGGTCAAATAATACAGGA+CGG | 0.679494 | 3_2:-47930171 | Msa0408330:three_prime_UTR |
| AAACCTCTGGAACAAGACCA+AGG | 0.708442 | 3_2:+47931684 | None:intergenic |
| TCAGACAGAAAAGGCCCCAG+CGG | 0.726683 | 3_2:-47931765 | Msa0408330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAATAATTAACAATAAA+GGG | + | chr3_2:47932483-47932502 | None:intergenic | 10.0% |
| !! | ATTGAAATAATTAACAATAA+AGG | + | chr3_2:47932484-47932503 | None:intergenic | 10.0% |
| !! | ATTATTTCAATCAAAATAAT+TGG | - | chr3_2:47932493-47932512 | Msa0408330:intron | 10.0% |
| !!! | ATTTTTATATGAATTAGCTT+TGG | - | chr3_2:47930675-47930694 | Msa0408330:intron | 15.0% |
| !!! | TTTTTTTGTCAATTTAGTAT+AGG | - | chr3_2:47931042-47931061 | Msa0408330:intron | 15.0% |
| !!! | ATCATTTTCTTATTGATTTT+AGG | - | chr3_2:47931438-47931457 | Msa0408330:intron | 15.0% |
| !!! | TCATTTTCTTATTGATTTTA+GGG | - | chr3_2:47931439-47931458 | Msa0408330:intron | 15.0% |
| !!! | AAAGTTGATATGATTTATAA+TGG | - | chr3_2:47931976-47931995 | Msa0408330:intron | 15.0% |
| !!! | TCATATTCTGTAATTTTAAA+AGG | + | chr3_2:47932523-47932542 | None:intergenic | 15.0% |
| !! | AATGTATATAAGAAATTCAT+TGG | + | chr3_2:47932583-47932602 | None:intergenic | 15.0% |
| !! | GATAAAAAAATGCTTATAAG+TGG | + | chr3_2:47930611-47930630 | None:intergenic | 20.0% |
| !! | TTGTACTTCAACAAAAAATT+TGG | - | chr3_2:47930773-47930792 | Msa0408330:intron | 20.0% |
| !! | TGTACTTCAACAAAAAATTT+GGG | - | chr3_2:47930774-47930793 | Msa0408330:intron | 20.0% |
| !!! | TTTTGGTCAAAGTTTATATT+TGG | - | chr3_2:47930930-47930949 | Msa0408330:CDS | 20.0% |
| !! | CCAGTAATAATTTGAAAAAA+TGG | + | chr3_2:47931187-47931206 | None:intergenic | 20.0% |
| !!! | CCATTTTTTCAAATTATTAC+TGG | - | chr3_2:47931184-47931203 | Msa0408330:intron | 20.0% |
| !! | ACTGTAAAGTATATTCATAT+TGG | - | chr3_2:47931317-47931336 | Msa0408330:intron | 20.0% |
| !! | ATATAAATATGCTGATAGAT+TGG | + | chr3_2:47931600-47931619 | None:intergenic | 20.0% |
| !! | TAACAATCATTCAAAGATTT+AGG | + | chr3_2:47931901-47931920 | None:intergenic | 20.0% |
| !! | TTTAAACAATTACATATTGC+AGG | - | chr3_2:47932128-47932147 | Msa0408330:intron | 20.0% |
| !! | AAAGAATGTAAACAATTTCA+AGG | + | chr3_2:47932393-47932412 | None:intergenic | 20.0% |
| !!! | ATTCTGTAATTTTAAAAGGA+TGG | + | chr3_2:47932519-47932538 | None:intergenic | 20.0% |
| !!! | GTAAAAGATTTTCAATCTAA+AGG | + | chr3_2:47932682-47932701 | None:intergenic | 20.0% |
| !! | GTATACGTTATTTATGTAAA+AGG | - | chr3_2:47932749-47932768 | Msa0408330:intron | 20.0% |
| !!! | TTCACTTTTAGTTGAATTAA+TGG | - | chr3_2:47933033-47933052 | Msa0408330:intron | 20.0% |
| ! | AACATGTCAAAACAATTCTA+CGG | + | chr3_2:47930403-47930422 | None:intergenic | 25.0% |
| ! | GTACTTCAACAAAAAATTTG+GGG | - | chr3_2:47930775-47930794 | Msa0408330:intron | 25.0% |
| ! | AAGTTTATATTTGGATGAAG+TGG | - | chr3_2:47930939-47930958 | Msa0408330:intron | 25.0% |
| !! | AACATTTTCACTGAAGTTAA+AGG | + | chr3_2:47930966-47930985 | None:intergenic | 25.0% |
| ! | GTATAGGATCATTAATTGAA+TGG | - | chr3_2:47931058-47931077 | Msa0408330:CDS | 25.0% |
| ! | CTTTGATTGTCCAAAATTAT+GGG | - | chr3_2:47931843-47931862 | Msa0408330:intron | 25.0% |
| ! | TATTTGTTCTTTCCTTAGTT+TGG | - | chr3_2:47932232-47932251 | Msa0408330:intron | 25.0% |
| !! | TATGCTAAATGTAAGTTTTG+TGG | - | chr3_2:47932350-47932369 | Msa0408330:intron | 25.0% |
| ! | ACAAGAAATCAGGTAATATA+TGG | + | chr3_2:47932644-47932663 | None:intergenic | 25.0% |
| !! | AAGATTTTCGTCTATTTATG+TGG | - | chr3_2:47932871-47932890 | Msa0408330:intron | 25.0% |
| !! | AGATTTTCGTCTATTTATGT+GGG | - | chr3_2:47932872-47932891 | Msa0408330:intron | 25.0% |
| ! | TACTTCTAATCATTTACTTG+TGG | - | chr3_2:47932898-47932917 | Msa0408330:intron | 25.0% |
| ! | AAAATCAGGTCAAATAATAC+AGG | - | chr3_2:47933069-47933088 | Msa0408330:CDS | 25.0% |
| ! | CAATTAGAACAAAAATCTGT+GGG | + | chr3_2:47933269-47933288 | None:intergenic | 25.0% |
| ! | GTAGTTGTTGAGTTTAACTT+TGG | + | chr3_2:47929934-47929953 | None:intergenic | 30.0% |
| AGAGAAGAAAGTGAAATGAT+GGG | + | chr3_2:47930230-47930249 | None:intergenic | 30.0% | |
| ! | TACATGAAATTCTGAGAAAG+TGG | + | chr3_2:47930255-47930274 | None:intergenic | 30.0% |
| CCAAATGGTATATTAATCAG+TGG | + | chr3_2:47930304-47930323 | None:intergenic | 30.0% | |
| ! | CCACTGATTAATATACCATT+TGG | - | chr3_2:47930301-47930320 | Msa0408330:CDS | 30.0% |
| ! | TAACATTTTCACAGACCAAA+TGG | + | chr3_2:47930319-47930338 | None:intergenic | 30.0% |
| ATCTAATCTTAGTGCATGTT+TGG | - | chr3_2:47930348-47930367 | Msa0408330:intron | 30.0% | |
| !! | TGCATGTTTGGTTTCAATTT+TGG | - | chr3_2:47930360-47930379 | Msa0408330:intron | 30.0% |
| ! | CAATTCTACGGAATCAATTT+TGG | + | chr3_2:47930391-47930410 | None:intergenic | 30.0% |
| TTTGACATGTTCAATTGCTT+CGG | - | chr3_2:47930412-47930431 | Msa0408330:intron | 30.0% | |
| AAAGTGAAGTGATTTATGTC+TGG | + | chr3_2:47930558-47930577 | None:intergenic | 30.0% | |
| ATCACTGTGTTTAAATTGAC+TGG | - | chr3_2:47930628-47930647 | Msa0408330:intron | 30.0% | |
| !!! | AGCTTTGGAAGTTTTTAACT+TGG | - | chr3_2:47930690-47930709 | Msa0408330:intron | 30.0% |
| ! | CACAAGCAACATTTTTGTAA+TGG | - | chr3_2:47930812-47930831 | Msa0408330:intron | 30.0% |
| AACAATCCTACAAACACAAA+GGG | + | chr3_2:47930882-47930901 | None:intergenic | 30.0% | |
| AAACAATCCTACAAACACAA+AGG | + | chr3_2:47930883-47930902 | None:intergenic | 30.0% | |
| ! | AGTTTTGCACTAGGAAATTT+TGG | - | chr3_2:47930913-47930932 | Msa0408330:CDS | 30.0% |
| TTACTGAAGCATAGTTATTG+TGG | - | chr3_2:47931003-47931022 | Msa0408330:intron | 30.0% | |
| CAAAAAAATCACAACTGTGA+TGG | + | chr3_2:47931030-47931049 | None:intergenic | 30.0% | |
| !! | TTTCAACCTAAAGTGTTGAT+CGG | + | chr3_2:47931106-47931125 | None:intergenic | 30.0% |
| ATATTGGTATAGAGCTACAA+AGG | - | chr3_2:47931333-47931352 | Msa0408330:intron | 30.0% | |
| !! | ATTGATTTTAGGGATCAACA+AGG | - | chr3_2:47931449-47931468 | Msa0408330:intron | 30.0% |
| AGAACAAAACACTCATTACT+AGG | + | chr3_2:47931664-47931683 | None:intergenic | 30.0% | |
| GCTTTGATTGTCCAAAATTA+TGG | - | chr3_2:47931842-47931861 | Msa0408330:intron | 30.0% | |
| !! | TTGGTGTTGTATTTCCATAA+TGG | - | chr3_2:47932078-47932097 | Msa0408330:intron | 30.0% |
| AATCATTAAGTGCACCATTA+TGG | + | chr3_2:47932095-47932114 | None:intergenic | 30.0% | |
| TCAAATACAAAGCCAAACTA+AGG | + | chr3_2:47932247-47932266 | None:intergenic | 30.0% | |
| TAACATCATTCATTTCTTCC+AGG | - | chr3_2:47932288-47932307 | Msa0408330:intron | 30.0% | |
| TTGCGCTGTAAAAGTTAATT+CGG | - | chr3_2:47932606-47932625 | Msa0408330:intron | 30.0% | |
| TAGCTATAGTACAAGAAATC+AGG | + | chr3_2:47932654-47932673 | None:intergenic | 30.0% | |
| GATTGAAGATTAATCTTCGA+AGG | - | chr3_2:47932712-47932731 | Msa0408330:intron | 30.0% | |
| TCATTTACTTGTGGTTTGAA+TGG | - | chr3_2:47932907-47932926 | Msa0408330:intron | 30.0% | |
| TATGCACTCAATTTCAATCT+TGG | + | chr3_2:47932999-47933018 | None:intergenic | 30.0% | |
| ! | GATAGTTCTATCGTAAAATC+AGG | - | chr3_2:47933055-47933074 | Msa0408330:CDS | 30.0% |
| GCAATTAGAACAAAAATCTG+TGG | + | chr3_2:47933270-47933289 | None:intergenic | 30.0% | |
| ! | TAATTGCTCTTGTTTGTGTA+TGG | - | chr3_2:47933283-47933302 | Msa0408330:five_prime_UTR | 30.0% |
| CGAATCTAGTGAGAAAGAAA+TGG | - | chr3_2:47930017-47930036 | Msa0408330:three_prime_UTR | 35.0% | |
| ! | AGTGAAATGATGGGAACTTA+CGG | + | chr3_2:47930221-47930240 | None:intergenic | 35.0% |
| GAGAGAAGAAAGTGAAATGA+TGG | + | chr3_2:47930231-47930250 | None:intergenic | 35.0% | |
| TTCTCATTGATGTACAATGC+AGG | - | chr3_2:47930846-47930865 | Msa0408330:intron | 35.0% | |
| TCTCATTGATGTACAATGCA+GGG | - | chr3_2:47930847-47930866 | Msa0408330:intron | 35.0% | |
| ! | ATGTACAATGCAGGGTTTTA+TGG | - | chr3_2:47930855-47930874 | Msa0408330:intron | 35.0% |
| !!! | TTCCTATCTAGTTTTGCACT+AGG | - | chr3_2:47930904-47930923 | Msa0408330:intron | 35.0% |
| TTCCTAGTGCAAAACTAGAT+AGG | + | chr3_2:47930909-47930928 | None:intergenic | 35.0% | |
| GCTTTGATTGCTTGAGAATA+CGG | + | chr3_2:47931513-47931532 | None:intergenic | 35.0% | |
| TGAGACAAATAGAAGGTTGT+TGG | + | chr3_2:47931535-47931554 | None:intergenic | 35.0% | |
| AACAACCTTCTATTTGTCTC+AGG | - | chr3_2:47931534-47931553 | Msa0408330:CDS | 35.0% | |
| ACACTGAATTATCAAACCTC+TGG | + | chr3_2:47931576-47931595 | None:intergenic | 35.0% | |
| ! | TTTTGTTCTCTAATGCAGAC+AGG | - | chr3_2:47931675-47931694 | Msa0408330:intron | 35.0% |
| TTTGTTCTCTAATGCAGACA+GGG | - | chr3_2:47931676-47931695 | Msa0408330:intron | 35.0% | |
| CCTTTCATGTTGTAGTATGT+GGG | - | chr3_2:47931765-47931784 | Msa0408330:CDS | 35.0% | |
| TACCTTGTCATCTTTCACTT+TGG | - | chr3_2:47931805-47931824 | Msa0408330:intron | 35.0% | |
| AAAACTCTCAATAGAATGCC+CGG | - | chr3_2:47932045-47932064 | Msa0408330:intron | 35.0% | |
| ATGGAAATACAACACCAAGA+CGG | + | chr3_2:47932076-47932095 | None:intergenic | 35.0% | |
| ATTGCAGGTTCTCAAAAACA+TGG | - | chr3_2:47932143-47932162 | Msa0408330:intron | 35.0% | |
| TTGCAGGTTCTCAAAAACAT+GGG | - | chr3_2:47932144-47932163 | Msa0408330:intron | 35.0% | |
| !! | AGTTTGGCTTTGTATTTGAG+TGG | - | chr3_2:47932248-47932267 | Msa0408330:intron | 35.0% |
| ATCATTCATTTCTTCCAGGT+TGG | - | chr3_2:47932292-47932311 | Msa0408330:intron | 35.0% | |
| ATTTCAATCTTGGCATCCAA+CGG | + | chr3_2:47932989-47933008 | None:intergenic | 35.0% | |
| TCAGGTCAAATAATACAGGA+CGG | - | chr3_2:47933073-47933092 | Msa0408330:CDS | 35.0% | |
| !!! | GGTCTTTTCTAGTTGAATCA+TGG | - | chr3_2:47933131-47933150 | Msa0408330:CDS | 35.0% |
| GAAAGGCTTAAGCAAAGGAA+GGG | + | chr3_2:47930189-47930208 | None:intergenic | 40.0% | |
| ! | GTGAAATGATGGGAACTTAC+GGG | + | chr3_2:47930220-47930239 | None:intergenic | 40.0% |
| TTCTCCAACAAGTTCATCCT+TGG | - | chr3_2:47930742-47930761 | Msa0408330:intron | 40.0% | |
| TCTCCAACAAGTTCATCCTT+GGG | - | chr3_2:47930743-47930762 | Msa0408330:intron | 40.0% | |
| TATGGACCCTTTGTGTTTGT+AGG | - | chr3_2:47930873-47930892 | Msa0408330:intron | 40.0% | |
| !! | CTTTAGGTTGAAAGCATGTC+TGG | - | chr3_2:47931113-47931132 | Msa0408330:intron | 40.0% |
| ACGTATCATTGTCGTGTCTT+TGG | - | chr3_2:47931212-47931231 | Msa0408330:intron | 40.0% | |
| TGGCTATGTAAATGCTCCAT+AGG | - | chr3_2:47931232-47931251 | Msa0408330:intron | 40.0% | |
| TGCACATGAACACCTACAAA+AGG | + | chr3_2:47931263-47931282 | None:intergenic | 40.0% | |
| CTACAAAGGAAGAGAGACAT+TGG | - | chr3_2:47931347-47931366 | Msa0408330:intron | 40.0% | |
| GCCTTTCATGTTGTAGTATG+TGG | - | chr3_2:47931764-47931783 | Msa0408330:CDS | 40.0% | |
| CCCACATACTACAACATGAA+AGG | + | chr3_2:47931768-47931787 | None:intergenic | 40.0% | |
| ATGACAAGGTACAGATGCTA+AGG | + | chr3_2:47931796-47931815 | None:intergenic | 40.0% | |
| AGCCAAAGTGAAAGATGACA+AGG | + | chr3_2:47931810-47931829 | None:intergenic | 40.0% | |
| ! | GCATCTCAAGCCCATAATTT+TGG | + | chr3_2:47931856-47931875 | None:intergenic | 40.0% |
| TGCAGGTTCTCAAAAACATG+GGG | - | chr3_2:47932145-47932164 | Msa0408330:intron | 40.0% | |
| CTTAACAACTGATGCATAGC+TGG | + | chr3_2:47932193-47932212 | None:intergenic | 40.0% | |
| !! | TTGGCTTTGTATTTGAGTGG+TGG | - | chr3_2:47932251-47932270 | Msa0408330:intron | 40.0% |
| ACTTAGCACATTCAGAAAGC+TGG | + | chr3_2:47932842-47932861 | None:intergenic | 40.0% | |
| ATCAGTACACATCCAACTAC+TGG | - | chr3_2:47933098-47933117 | Msa0408330:CDS | 40.0% | |
| CCAAAGTAAACACCAGTAGT+TGG | + | chr3_2:47933113-47933132 | None:intergenic | 40.0% | |
| CCAACTACTGGTGTTTACTT+TGG | - | chr3_2:47933110-47933129 | Msa0408330:CDS | 40.0% | |
| GTGAGAAAGAAATGGCGTCA+TGG | - | chr3_2:47930025-47930044 | Msa0408330:three_prime_UTR | 45.0% | |
| GTTGATTGGTGGAATGTGGA+AGG | + | chr3_2:47930064-47930083 | None:intergenic | 45.0% | |
| AGAAGAAGATGAGCGCAACA+TGG | + | chr3_2:47930154-47930173 | None:intergenic | 45.0% | |
| GGAAAGGCTTAAGCAAAGGA+AGG | + | chr3_2:47930190-47930209 | None:intergenic | 45.0% | |
| CAGTGGAAAGGCTTAAGCAA+AGG | + | chr3_2:47930194-47930213 | None:intergenic | 45.0% | |
| ACTTACGGGTATCAGTGGAA+AGG | + | chr3_2:47930206-47930225 | None:intergenic | 45.0% | |
| CTCCAACAAGTTCATCCTTG+GGG | - | chr3_2:47930744-47930763 | Msa0408330:intron | 45.0% | |
| GAAGTACAAAGTAGTCCCCA+AGG | + | chr3_2:47930762-47930781 | None:intergenic | 45.0% | |
| !! | GTGTTGATCGGTGCTACATA+GGG | + | chr3_2:47931094-47931113 | None:intergenic | 45.0% |
| !! | AGTGTTGATCGGTGCTACAT+AGG | + | chr3_2:47931095-47931114 | None:intergenic | 45.0% |
| !! | GTAGCACCGATCAACACTTT+AGG | - | chr3_2:47931097-47931116 | Msa0408330:CDS | 45.0% |
| CCTACAAAAGGTGAGTCCTA+TGG | + | chr3_2:47931251-47931270 | None:intergenic | 45.0% | |
| ! | CCATAGGACTCACCTTTTGT+AGG | - | chr3_2:47931248-47931267 | Msa0408330:intron | 45.0% |
| GGAAGCTGTTCAGACAGAAA+AGG | - | chr3_2:47931470-47931489 | Msa0408330:intron | 45.0% | |
| GGACACCTGAGACAAATAGA+AGG | + | chr3_2:47931542-47931561 | None:intergenic | 45.0% | |
| CTATTTGTCTCAGGTGTCCT+TGG | - | chr3_2:47931543-47931562 | Msa0408330:CDS | 45.0% | |
| !! | AAACCTCTGGAACAAGACCA+AGG | + | chr3_2:47931563-47931582 | None:intergenic | 45.0% |
| TAGGAAAACATCATGCAGCC+AGG | + | chr3_2:47931645-47931664 | None:intergenic | 45.0% | |
| TGTTGAAGATCAGACTGAGC+AGG | - | chr3_2:47931716-47931735 | Msa0408330:CDS | 45.0% | |
| !! | GGCTTGAGATGCTGTTTCAT+TGG | - | chr3_2:47931864-47931883 | Msa0408330:intron | 45.0% |
| GCAGGTTCTCAAAAACATGG+GGG | - | chr3_2:47932146-47932165 | Msa0408330:intron | 45.0% | |
| ACTAGATTCGCTCAGACACG+AGG | + | chr3_2:47930007-47930026 | None:intergenic | 50.0% | |
| TGGGAACTTACGGGTATCAG+TGG | + | chr3_2:47930211-47930230 | None:intergenic | 50.0% | |
| GTCCCCAAGGATGAACTTGT+TGG | + | chr3_2:47930749-47930768 | None:intergenic | 50.0% | |
| !! | TGTCCTTGGTCTTGTTCCAG+AGG | - | chr3_2:47931557-47931576 | Msa0408330:intron | 50.0% |
| GTGCAGTTGTGCACTTATCC+TGG | - | chr3_2:47931624-47931643 | Msa0408330:intron | 50.0% | |
| GCAGACAGGGAAGTTTGTCT+CGG | - | chr3_2:47931689-47931708 | Msa0408330:CDS | 50.0% | |
| AACACCAAGACGGAGTTACC+GGG | + | chr3_2:47932066-47932085 | None:intergenic | 50.0% | |
| CAACACCAAGACGGAGTTAC+CGG | + | chr3_2:47932067-47932086 | None:intergenic | 50.0% | |
| ATGGGGGAGATCCTGAAATC+TGG | - | chr3_2:47932162-47932181 | Msa0408330:intron | 50.0% | |
| TGGGGGAGATCCTGAAATCT+GGG | - | chr3_2:47932163-47932182 | Msa0408330:intron | 50.0% | |
| !! | TTCCAGGTTGGCTGACTTGA+AGG | - | chr3_2:47932304-47932323 | Msa0408330:intron | 50.0% |
| AATCTTGGCATCCAACGGCA+AGG | + | chr3_2:47932984-47933003 | None:intergenic | 50.0% | |
| CTCAGACACGAGGCAGTTCA+CGG | + | chr3_2:47929997-47930016 | None:intergenic | 55.0% | |
| !! | CGGCGTTGATTGGTGGAATG+TGG | + | chr3_2:47930068-47930087 | None:intergenic | 55.0% |
| TGATACGACGCTGACACACG+TGG | - | chr3_2:47931146-47931165 | Msa0408330:intron | 55.0% | |
| TCAGACAGAAAAGGCCCCAG+CGG | - | chr3_2:47931479-47931498 | Msa0408330:intron | 55.0% | |
| AATACGGTCCCAATGCCGCT+GGG | + | chr3_2:47931497-47931516 | None:intergenic | 55.0% | |
| AATGCCCGGTAACTCCGTCT+TGG | - | chr3_2:47932059-47932078 | Msa0408330:intron | 55.0% | |
| GGGGGAGATCCTGAAATCTG+GGG | - | chr3_2:47932164-47932183 | Msa0408330:intron | 55.0% | |
| GGGGAGATCCTGAAATCTGG+GGG | - | chr3_2:47932165-47932184 | Msa0408330:intron | 55.0% | |
| GTCCTTCAAGTCAGCCAACC+TGG | + | chr3_2:47932309-47932328 | None:intergenic | 55.0% | |
| TTGATACGTCGCACGAGCTG+GGG | + | chr3_2:47932954-47932973 | None:intergenic | 55.0% | |
| CTTGATACGTCGCACGAGCT+GGG | + | chr3_2:47932955-47932974 | None:intergenic | 55.0% | |
| ACTTGATACGTCGCACGAGC+TGG | + | chr3_2:47932956-47932975 | None:intergenic | 55.0% | |
| TCAAGTAGCTGCCTTGCCGT+TGG | - | chr3_2:47932970-47932989 | Msa0408330:intron | 55.0% | |
| TGGCGTCATGGTGTGCAGCA+AGG | - | chr3_2:47930037-47930056 | Msa0408330:three_prime_UTR | 60.0% | |
| !! | AGAACGGCGGCGTTGATTGG+TGG | + | chr3_2:47930075-47930094 | None:intergenic | 60.0% |
| !! | TGGAGAACGGCGGCGTTGAT+TGG | + | chr3_2:47930078-47930097 | None:intergenic | 60.0% |
| !! | AACGGAGACTCCGCCGATTC+CGG | + | chr3_2:47930121-47930140 | None:intergenic | 60.0% |
| !! | CAACATGGCAGTGCCGGCAA+CGG | + | chr3_2:47930139-47930158 | None:intergenic | 60.0% |
| TGAGCGCAACATGGCAGTGC+CGG | + | chr3_2:47930145-47930164 | None:intergenic | 60.0% | |
| AGAAAAGGCCCCAGCGGCAT+TGG | - | chr3_2:47931485-47931504 | Msa0408330:intron | 60.0% | |
| GAAAAGGCCCCAGCGGCATT+GGG | - | chr3_2:47931486-47931505 | Msa0408330:intron | 60.0% | |
| ATACGGTCCCAATGCCGCTG+GGG | + | chr3_2:47931496-47931515 | None:intergenic | 60.0% | |
| GAATACGGTCCCAATGCCGC+TGG | + | chr3_2:47931498-47931517 | None:intergenic | 60.0% | |
| AGCTGGCACCCCCAGATTTC+AGG | + | chr3_2:47932176-47932195 | None:intergenic | 60.0% | |
| TCAACGCCGCCGTTCTCCAC+CGG | - | chr3_2:47930079-47930098 | Msa0408330:three_prime_UTR | 65.0% | |
| ! | TGAAGCGCGCCGGTGGAGAA+CGG | + | chr3_2:47930091-47930110 | None:intergenic | 65.0% |
| TTCTCCACCGGCGCGCTTCA+TGG | - | chr3_2:47930091-47930110 | Msa0408330:three_prime_UTR | 65.0% | |
| TCTCCACCGGCGCGCTTCAT+GGG | - | chr3_2:47930092-47930111 | Msa0408330:three_prime_UTR | 65.0% | |
| GCTTCATGGGCCGCCGGAAT+CGG | - | chr3_2:47930105-47930124 | Msa0408330:three_prime_UTR | 65.0% | |
| ATCGGCGGAGTCTCCGTTGC+CGG | - | chr3_2:47930123-47930142 | Msa0408330:three_prime_UTR | 65.0% | |
| TCATGGGCCGCCGGAATCGG+CGG | - | chr3_2:47930108-47930127 | Msa0408330:three_prime_UTR | 70.0% | |
| !! | GGAGACTCCGCCGATTCCGG+CGG | + | chr3_2:47930118-47930137 | None:intergenic | 70.0% |
| GCACGAGCTGGGGCAGGTGA+AGG | + | chr3_2:47932944-47932963 | None:intergenic | 70.0% | |
| TACGTCGCACGAGCTGGGGC+AGG | + | chr3_2:47932950-47932969 | None:intergenic | 70.0% | |
| ! | AGCGCGCCGGTGGAGAACGG+CGG | + | chr3_2:47930088-47930107 | None:intergenic | 75.0% |
| ! | CGGCCCATGAAGCGCGCCGG+TGG | + | chr3_2:47930098-47930117 | None:intergenic | 80.0% |
| ! | CGGCGGCCCATGAAGCGCGC+CGG | + | chr3_2:47930101-47930120 | None:intergenic | 80.0% |
| ! | CGGCGCGCTTCATGGGCCGC+CGG | - | chr3_2:47930099-47930118 | Msa0408330:three_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 47929925 | 47933341 | 47929925 | ID=Msa0408330;Name=Msa0408330 |
| chr3_2 | mRNA | 47929925 | 47933341 | 47929925 | ID=Msa0408330-mRNA-1;Parent=Msa0408330;Name=Msa0408330-mRNA-1;_AED=0.14;_eAED=0.14;_QI=111|1|1|1|1|1|6|311|188 |
| chr3_2 | exon | 47929925 | 47930330 | 47929925 | ID=Msa0408330-mRNA-1:exon:9285;Parent=Msa0408330-mRNA-1 |
| chr3_2 | exon | 47930907 | 47930956 | 47930907 | ID=Msa0408330-mRNA-1:exon:9284;Parent=Msa0408330-mRNA-1 |
| chr3_2 | exon | 47931043 | 47931116 | 47931043 | ID=Msa0408330-mRNA-1:exon:9283;Parent=Msa0408330-mRNA-1 |
| chr3_2 | exon | 47931529 | 47931573 | 47931529 | ID=Msa0408330-mRNA-1:exon:9282;Parent=Msa0408330-mRNA-1 |
| chr3_2 | exon | 47931688 | 47931806 | 47931688 | ID=Msa0408330-mRNA-1:exon:9281;Parent=Msa0408330-mRNA-1 |
| chr3_2 | exon | 47933047 | 47933341 | 47933047 | ID=Msa0408330-mRNA-1:exon:9280;Parent=Msa0408330-mRNA-1 |
| chr3_2 | five_prime_UTR | 47933231 | 47933341 | 47933231 | ID=Msa0408330-mRNA-1:five_prime_utr;Parent=Msa0408330-mRNA-1 |
| chr3_2 | CDS | 47933047 | 47933230 | 47933047 | ID=Msa0408330-mRNA-1:cds;Parent=Msa0408330-mRNA-1 |
| chr3_2 | CDS | 47931688 | 47931806 | 47931688 | ID=Msa0408330-mRNA-1:cds;Parent=Msa0408330-mRNA-1 |
| chr3_2 | CDS | 47931529 | 47931573 | 47931529 | ID=Msa0408330-mRNA-1:cds;Parent=Msa0408330-mRNA-1 |
| chr3_2 | CDS | 47931043 | 47931116 | 47931043 | ID=Msa0408330-mRNA-1:cds;Parent=Msa0408330-mRNA-1 |
| chr3_2 | CDS | 47930907 | 47930956 | 47930907 | ID=Msa0408330-mRNA-1:cds;Parent=Msa0408330-mRNA-1 |
| chr3_2 | CDS | 47930236 | 47930330 | 47930236 | ID=Msa0408330-mRNA-1:cds;Parent=Msa0408330-mRNA-1 |
| chr3_2 | three_prime_UTR | 47929925 | 47930235 | 47929925 | ID=Msa0408330-mRNA-1:three_prime_utr;Parent=Msa0408330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
