Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0360930 | XP_013459798.1 | 98.404 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 2.95e-133 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0360930 | sp|Q94JQ4|RIDA_ARATH | 65.079 | 189 | 60 | 3 | 3 | 188 | 2 | 187 | 4.13e-80 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0360930 | I3SK73 | 98.404 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 1.41e-133 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009180 | Msa0360930 | -0.802616 | 5.156097e-49 | -8.615850e-47 |
| Msa0079070 | Msa0360930 | -0.803292 | 3.737902e-49 | -8.615850e-47 |
| Msa0172080 | Msa0360930 | -0.804702 | 1.902619e-49 | -8.615850e-47 |
| Msa0219590 | Msa0360930 | -0.806560 | 7.752508e-50 | -8.615850e-47 |
| Msa0360930 | Msa0408330 | 0.848950 | 4.421658e-60 | -8.615850e-47 |
| Msa0360930 | Msa0455760 | -0.815956 | 7.088539e-52 | -8.615850e-47 |
| Msa0360930 | Msa0535630 | -0.805792 | 1.125134e-49 | -8.615850e-47 |
| Msa0360930 | Msa0673120 | -0.803785 | 2.952928e-49 | -8.615850e-47 |
| Msa0360930 | Msa0797250 | -0.801226 | 9.949428e-49 | -8.615850e-47 |
| Msa0360930 | Msa1063400 | -0.826538 | 2.568213e-54 | -8.615850e-47 |
| Msa0360930 | Msa1122150 | -0.816055 | 6.735095e-52 | -8.615850e-47 |
| Msa0360930 | Msa1325410 | 0.802350 | 5.850210e-49 | -8.615850e-47 |
| Msa0360930 | Msa1325860 | 0.810687 | 1.018230e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0360930 | MtrunA17_Chr3g0098941 | 98.404 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 2.71e-137 | 380 |
| Msa0360930 | MtrunA17_Chr5g0444131 | 73.298 | 191 | 48 | 3 | 1 | 188 | 1 | 191 | 4.15e-96 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0360930 | AT3G20390.1 | 65.079 | 189 | 60 | 3 | 3 | 188 | 2 | 187 | 4.20e-81 | 239 |
| Msa0360930 | AT3G20390.2 | 65.079 | 189 | 60 | 3 | 3 | 188 | 70 | 255 | 4.09e-80 | 239 |
Find 66 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCACCGGCGCGCTTCA+TGG | 0.245173 | 3_1:-50886027 | Msa0360930:CDS |
| GCTTCATGGGCCGCCGGAAT+CGG | 0.288598 | 3_1:-50886013 | Msa0360930:CDS |
| CTATTTGTCTCAGGTGTCCT+TGG | 0.335818 | 3_1:-50884574 | Msa0360930:CDS |
| TTCCAGGTTGGCTGACTTGA+AGG | 0.345750 | 3_1:-50883813 | Msa0360930:intron |
| TATGCACTCAATTTCAATCT+TGG | 0.362374 | 3_1:+50883121 | None:intergenic |
| AGAAAAGGCCCCAGCGGCAT+TGG | 0.366238 | 3_1:-50884632 | Msa0360930:CDS |
| TGGAGAACGGCGGCGTTGAT+TGG | 0.378595 | 3_1:+50886043 | None:intergenic |
| AACGGAGACTCCGCCGATTC+CGG | 0.378739 | 3_1:+50886000 | None:intergenic |
| GCTTTGATTGCTTGAGAATA+CGG | 0.405845 | 3_1:+50884607 | None:intergenic |
| CCAACTACTGGTGTTTACTT+TGG | 0.419612 | 3_1:-50883007 | Msa0360930:three_prime_UTR |
| GAAAAGGCCCCAGCGGCATT+GGG | 0.423615 | 3_1:-50884631 | Msa0360930:CDS |
| TCTCCACCGGCGCGCTTCAT+GGG | 0.434032 | 3_1:-50886026 | Msa0360930:CDS |
| ATCGGCGGAGTCTCCGTTGC+CGG | 0.444540 | 3_1:-50885995 | Msa0360930:CDS |
| GATAGTTCTATCGTAAAATC+AGG | 0.445373 | 3_1:-50883062 | Msa0360930:three_prime_UTR |
| CTTAACAACTGATGCATAGC+TGG | 0.447171 | 3_1:+50883927 | None:intergenic |
| TCTAATTGCTCGTTTGTGTA+TGG | 0.447512 | 3_1:-50882836 | Msa0360930:three_prime_UTR |
| TGAGACAAATAGAAGGTTGT+TGG | 0.447747 | 3_1:+50884585 | None:intergenic |
| TGAGCGCAACATGGCAGTGC+CGG | 0.462430 | 3_1:+50885976 | None:intergenic |
| AACAACCTTCTATTTGTCTC+AGG | 0.469075 | 3_1:-50884583 | Msa0360930:CDS |
| ACTTGATACGTCGCACGAGC+TGG | 0.469228 | 3_1:+50883164 | None:intergenic |
| CGAATCTAGTGAGAAAGAAA+TGG | 0.473075 | 3_1:-50886101 | Msa0360930:exon |
| GTAGTTGTTGAGTTTAACTT+TGG | 0.475445 | 3_1:+50886187 | None:intergenic |
| AAAATCAGGTCAAATAATAC+AGG | 0.481895 | 3_1:-50883048 | Msa0360930:three_prime_UTR |
| GCACGAGCTGGGGCAGGTGA+AGG | 0.482738 | 3_1:+50883176 | None:intergenic |
| CTTGATACGTCGCACGAGCT+GGG | 0.495903 | 3_1:+50883165 | None:intergenic |
| CGGCCCATGAAGCGCGCCGG+TGG | 0.502790 | 3_1:+50886023 | None:intergenic |
| GAATACGGTCCCAATGCCGC+TGG | 0.504483 | 3_1:+50884622 | None:intergenic |
| TCAACGCCGCCGTTCTCCAC+CGG | 0.508384 | 3_1:-50886039 | Msa0360930:CDS |
| CTCAGACACGAGGCAGTTCA+CGG | 0.509072 | 3_1:+50886124 | None:intergenic |
| AGAACGGCGGCGTTGATTGG+TGG | 0.520088 | 3_1:+50886046 | None:intergenic |
| CGGCGCGCTTCATGGGCCGC+CGG | 0.523403 | 3_1:-50886019 | Msa0360930:CDS |
| ATCAGTTCACATCCAACTAC+TGG | 0.528346 | 3_1:-50883019 | Msa0360930:three_prime_UTR |
| CCAAAGTAAACACCAGTAGT+TGG | 0.529695 | 3_1:+50883007 | None:intergenic |
| TACGTCGCACGAGCTGGGGC+AGG | 0.534632 | 3_1:+50883170 | None:intergenic |
| CAACATGGCAGTGCCGGCAA+CGG | 0.534933 | 3_1:+50885982 | None:intergenic |
| TGTCCTTGGTCTTGTTCCAG+AGG | 0.537834 | 3_1:-50884560 | Msa0360930:intron |
| TGTTGAAGATCAGACTGAGC+AGG | 0.545352 | 3_1:-50884401 | Msa0360930:intron |
| AATACGGTCCCAATGCCGCT+GGG | 0.545961 | 3_1:+50884623 | None:intergenic |
| CGGCGGCCCATGAAGCGCGC+CGG | 0.548624 | 3_1:+50886020 | None:intergenic |
| GGACACCTGAGACAAATAGA+AGG | 0.553587 | 3_1:+50884578 | None:intergenic |
| TCATGGGCCGCCGGAATCGG+CGG | 0.556526 | 3_1:-50886010 | Msa0360930:CDS |
| TCAAGTAGCTGCCTTGCCGT+TGG | 0.560196 | 3_1:-50883147 | Msa0360930:CDS |
| GGAAGCTGTTCAGACAGAAA+AGG | 0.561997 | 3_1:-50884647 | Msa0360930:CDS |
| TGAAGCGCGCCGGTGGAGAA+CGG | 0.562145 | 3_1:+50886030 | None:intergenic |
| ATTTCAATCTTGGCATCCAA+CGG | 0.567118 | 3_1:+50883131 | None:intergenic |
| GGAAAGGCTTAAGCAAAGGA+AGG | 0.586489 | 3_1:+50885931 | None:intergenic |
| GGAGACTCCGCCGATTCCGG+CGG | 0.590150 | 3_1:+50886003 | None:intergenic |
| CAGTGGAAAGGCTTAAGCAA+AGG | 0.596253 | 3_1:+50885927 | None:intergenic |
| CGGCGTTGATTGGTGGAATG+TGG | 0.604191 | 3_1:+50886053 | None:intergenic |
| TGGCGTCATGGTGTGCAGCA+AGG | 0.608058 | 3_1:-50886081 | Msa0360930:CDS |
| GTGAGAAAGAAATGGCGTCA+TGG | 0.617536 | 3_1:-50886093 | Msa0360930:exon |
| GTTGATTGGTGGAATGTGGA+AGG | 0.619041 | 3_1:+50886057 | None:intergenic |
| GCAGACAGGGAAGTTTGTCT+CGG | 0.622133 | 3_1:-50884428 | Msa0360930:intron |
| AATCTTGGCATCCAACGGCA+AGG | 0.623839 | 3_1:+50883136 | None:intergenic |
| TGGGAACTTACGGGTATCAG+TGG | 0.629631 | 3_1:+50885910 | None:intergenic |
| TTGATACGTCGCACGAGCTG+GGG | 0.630943 | 3_1:+50883166 | None:intergenic |
| GAAAGGCTTAAGCAAAGGAA+GGG | 0.642611 | 3_1:+50885932 | None:intergenic |
| AGAAGAAGATGAGCGCAACA+TGG | 0.649681 | 3_1:+50885967 | None:intergenic |
| AGCGCGCCGGTGGAGAACGG+CGG | 0.660633 | 3_1:+50886033 | None:intergenic |
| ACTTACGGGTATCAGTGGAA+AGG | 0.665039 | 3_1:+50885915 | None:intergenic |
| ATACGGTCCCAATGCCGCTG+GGG | 0.665669 | 3_1:+50884624 | None:intergenic |
| ACTAGATTCGCTCAGACACG+AGG | 0.676893 | 3_1:+50886114 | None:intergenic |
| GGGGAGATCCTGAAATCTGG+GGG | 0.679110 | 3_1:-50883952 | Msa0360930:CDS |
| TCAGGTCAAATAATACAGGA+CGG | 0.679494 | 3_1:-50883044 | Msa0360930:three_prime_UTR |
| AAACCTCTGGAACAAGACCA+AGG | 0.708442 | 3_1:+50884557 | None:intergenic |
| TCAGACAGAAAAGGCCCCAG+CGG | 0.726683 | 3_1:-50884638 | Msa0360930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAATAATTAACAATAAA+GGG | + | chr3_1:50885359-50885378 | None:intergenic | 10.0% |
| !! | ATTGAAATAATTAACAATAA+AGG | + | chr3_1:50885360-50885379 | None:intergenic | 10.0% |
| !! | ATTATTTCAATCAAAATAAT+TGG | - | chr3_1:50885369-50885388 | Msa0360930:intron | 10.0% |
| !!! | ATTTTTATATGAATTAGCTT+TGG | - | chr3_1:50883550-50883569 | Msa0360930:intron | 15.0% |
| !!! | TTTTTTTGTCAATTTAGTAT+AGG | - | chr3_1:50883917-50883936 | Msa0360930:CDS | 15.0% |
| !!! | ATCATTTTCTTATTGATTTT+AGG | - | chr3_1:50884314-50884333 | Msa0360930:intron | 15.0% |
| !!! | TCATTTTCTTATTGATTTTA+GGG | - | chr3_1:50884315-50884334 | Msa0360930:intron | 15.0% |
| !!! | AAAGTTGATATGATTTATAA+TGG | - | chr3_1:50884852-50884871 | Msa0360930:intron | 15.0% |
| !!! | TCATATTCTGTAATTTTAAA+AGG | + | chr3_1:50885399-50885418 | None:intergenic | 15.0% |
| !! | AATGTATATAAGAAATTCAT+TGG | + | chr3_1:50885459-50885478 | None:intergenic | 15.0% |
| !! | GATAAAAAAATGCTTATAAG+TGG | + | chr3_1:50883486-50883505 | None:intergenic | 20.0% |
| !! | TTGTACTTCAACAAAAAATT+TGG | - | chr3_1:50883648-50883667 | Msa0360930:intron | 20.0% |
| !! | TGTACTTCAACAAAAAATTT+GGG | - | chr3_1:50883649-50883668 | Msa0360930:intron | 20.0% |
| !!! | TTTTGGTCAAAGTTTATATT+TGG | - | chr3_1:50883805-50883824 | Msa0360930:CDS | 20.0% |
| !! | CCAGTAATAATTTGAAAAAA+TGG | + | chr3_1:50884062-50884081 | None:intergenic | 20.0% |
| !!! | CCATTTTTTCAAATTATTAC+TGG | - | chr3_1:50884059-50884078 | Msa0360930:intron | 20.0% |
| !! | ACTGTAAAGTATATTCATAT+TGG | - | chr3_1:50884192-50884211 | Msa0360930:intron | 20.0% |
| !! | ATATAAATATGCTGATAGAT+TGG | + | chr3_1:50884476-50884495 | None:intergenic | 20.0% |
| !! | TAACAATCATTCAAAGATTT+AGG | + | chr3_1:50884777-50884796 | None:intergenic | 20.0% |
| !! | TTTAAACAATTACATATTGC+AGG | - | chr3_1:50885004-50885023 | Msa0360930:intron | 20.0% |
| !! | AAAGAATGTAAACAATTTCA+AGG | + | chr3_1:50885269-50885288 | None:intergenic | 20.0% |
| !!! | ATTCTGTAATTTTAAAAGGA+TGG | + | chr3_1:50885395-50885414 | None:intergenic | 20.0% |
| !!! | GTAAAAGATTTTCAATCTAA+AGG | + | chr3_1:50885558-50885577 | None:intergenic | 20.0% |
| !! | GTATACGTTATTTATGTAAA+AGG | - | chr3_1:50885625-50885644 | Msa0360930:intron | 20.0% |
| !!! | TTCACTTTTAGTTGAATTAA+TGG | - | chr3_1:50885909-50885928 | Msa0360930:intron | 20.0% |
| ! | AACATGTCAAAACAATTCTA+CGG | + | chr3_1:50883278-50883297 | None:intergenic | 25.0% |
| ! | GTACTTCAACAAAAAATTTG+GGG | - | chr3_1:50883650-50883669 | Msa0360930:intron | 25.0% |
| ! | AAGTTTATATTTGGATGAAG+TGG | - | chr3_1:50883814-50883833 | Msa0360930:intron | 25.0% |
| !! | AACATTTTCACTGAAGTTAA+AGG | + | chr3_1:50883841-50883860 | None:intergenic | 25.0% |
| ! | AGTATAGGATCATTAATTGA+AGG | - | chr3_1:50883932-50883951 | Msa0360930:CDS | 25.0% |
| ! | GTATAGGATCATTAATTGAA+GGG | - | chr3_1:50883933-50883952 | Msa0360930:CDS | 25.0% |
| ! | CTTTGATTGTCCAAAATTAT+GGG | - | chr3_1:50884719-50884738 | Msa0360930:intron | 25.0% |
| ! | TATTTGTTCTTTCCTTAGTT+TGG | - | chr3_1:50885108-50885127 | Msa0360930:intron | 25.0% |
| !! | TATGCTAAATGTAAGTTTTG+TGG | - | chr3_1:50885226-50885245 | Msa0360930:intron | 25.0% |
| ! | ACAAGAAATCAGGTAATATA+TGG | + | chr3_1:50885520-50885539 | None:intergenic | 25.0% |
| !! | AAGATTTTCGTCTATTTATG+TGG | - | chr3_1:50885747-50885766 | Msa0360930:intron | 25.0% |
| !! | AGATTTTCGTCTATTTATGT+GGG | - | chr3_1:50885748-50885767 | Msa0360930:intron | 25.0% |
| ! | TACTTCTAATCATTTACTTG+TGG | - | chr3_1:50885774-50885793 | Msa0360930:intron | 25.0% |
| ! | AAAATCAGGTCAAATAATAC+AGG | - | chr3_1:50885945-50885964 | Msa0360930:CDS | 25.0% |
| ! | CAATTAGAACAAAAATCTGT+GGG | + | chr3_1:50886145-50886164 | None:intergenic | 25.0% |
| ! | GTAGTTGTTGAGTTTAACTT+TGG | + | chr3_1:50882809-50882828 | None:intergenic | 30.0% |
| AGAGAAGAAAGTGAAATGAT+GGG | + | chr3_1:50883105-50883124 | None:intergenic | 30.0% | |
| ! | TACATGAAATTCTGAGAAAG+TGG | + | chr3_1:50883130-50883149 | None:intergenic | 30.0% |
| CCAAATGGTATATTAATCAG+TGG | + | chr3_1:50883179-50883198 | None:intergenic | 30.0% | |
| ! | CCACTGATTAATATACCATT+TGG | - | chr3_1:50883176-50883195 | Msa0360930:CDS | 30.0% |
| ! | TAACATTTTCACAGACCAAA+TGG | + | chr3_1:50883194-50883213 | None:intergenic | 30.0% |
| ATCTAATCTTAGTGCATGTT+TGG | - | chr3_1:50883223-50883242 | Msa0360930:intron | 30.0% | |
| !! | TGCATGTTTGGTTTCAATTT+TGG | - | chr3_1:50883235-50883254 | Msa0360930:intron | 30.0% |
| ! | CAATTCTACGGAATCAATTT+TGG | + | chr3_1:50883266-50883285 | None:intergenic | 30.0% |
| TTTGACATGTTCAATTGCTT+CGG | - | chr3_1:50883287-50883306 | Msa0360930:intron | 30.0% | |
| AAAGTGAAGTGATTTATGTC+TGG | + | chr3_1:50883433-50883452 | None:intergenic | 30.0% | |
| ATCACTGTGTTTAAATTGAC+TGG | - | chr3_1:50883503-50883522 | Msa0360930:intron | 30.0% | |
| !!! | AGCTTTGGAAGTTTTTAACT+TGG | - | chr3_1:50883565-50883584 | Msa0360930:intron | 30.0% |
| ! | CACAAGCAACATTTTTGTAA+TGG | - | chr3_1:50883687-50883706 | Msa0360930:intron | 30.0% |
| AACAATCCTACAAACACAAA+GGG | + | chr3_1:50883757-50883776 | None:intergenic | 30.0% | |
| AAACAATCCTACAAACACAA+AGG | + | chr3_1:50883758-50883777 | None:intergenic | 30.0% | |
| ! | AGTTTTGCACTAGGAAATTT+TGG | - | chr3_1:50883788-50883807 | Msa0360930:CDS | 30.0% |
| TTACTGAAGCATAGTTATTG+TGG | - | chr3_1:50883878-50883897 | Msa0360930:intron | 30.0% | |
| CAAAAAAATCACAACTGTGA+TGG | + | chr3_1:50883905-50883924 | None:intergenic | 30.0% | |
| !! | TTTCAACCTAAAGTGTTGAT+CGG | + | chr3_1:50883981-50884000 | None:intergenic | 30.0% |
| ATATTGGTATAGAGCTACAA+AGG | - | chr3_1:50884208-50884227 | Msa0360930:intron | 30.0% | |
| !! | ATTGATTTTAGGGATCAACA+AGG | - | chr3_1:50884325-50884344 | Msa0360930:intron | 30.0% |
| AGAACAAAACACTCATTACT+AGG | + | chr3_1:50884540-50884559 | None:intergenic | 30.0% | |
| GCTTTGATTGTCCAAAATTA+TGG | - | chr3_1:50884718-50884737 | Msa0360930:intron | 30.0% | |
| !! | TTGGTGTTGTATTTCCATAA+TGG | - | chr3_1:50884954-50884973 | Msa0360930:intron | 30.0% |
| AATCATTAAGTGCACCATTA+TGG | + | chr3_1:50884971-50884990 | None:intergenic | 30.0% | |
| TCAAATACAAAGCCAAACTA+AGG | + | chr3_1:50885123-50885142 | None:intergenic | 30.0% | |
| TAACATCATTCATTTCTTCC+AGG | - | chr3_1:50885164-50885183 | Msa0360930:intron | 30.0% | |
| TTGCGCTGTAAAAGTTAATT+CGG | - | chr3_1:50885482-50885501 | Msa0360930:intron | 30.0% | |
| TAGCTATAGTACAAGAAATC+AGG | + | chr3_1:50885530-50885549 | None:intergenic | 30.0% | |
| GATTGAAGATTAATCTTCGA+AGG | - | chr3_1:50885588-50885607 | Msa0360930:intron | 30.0% | |
| TCATTTACTTGTGGTTTGAA+TGG | - | chr3_1:50885783-50885802 | Msa0360930:intron | 30.0% | |
| TATGCACTCAATTTCAATCT+TGG | + | chr3_1:50885875-50885894 | None:intergenic | 30.0% | |
| ! | GATAGTTCTATCGTAAAATC+AGG | - | chr3_1:50885931-50885950 | Msa0360930:CDS | 30.0% |
| GCAATTAGAACAAAAATCTG+TGG | + | chr3_1:50886146-50886165 | None:intergenic | 30.0% | |
| CGAATCTAGTGAGAAAGAAA+TGG | - | chr3_1:50882892-50882911 | Msa0360930:three_prime_UTR | 35.0% | |
| ! | AGTGAAATGATGGGAACTTA+CGG | + | chr3_1:50883096-50883115 | None:intergenic | 35.0% |
| GAGAGAAGAAAGTGAAATGA+TGG | + | chr3_1:50883106-50883125 | None:intergenic | 35.0% | |
| TTCTCATTGATGTACAATGC+AGG | - | chr3_1:50883721-50883740 | Msa0360930:intron | 35.0% | |
| TCTCATTGATGTACAATGCA+GGG | - | chr3_1:50883722-50883741 | Msa0360930:intron | 35.0% | |
| ! | ATGTACAATGCAGGGTTTTA+TGG | - | chr3_1:50883730-50883749 | Msa0360930:intron | 35.0% |
| !!! | TTCCTATCTAGTTTTGCACT+AGG | - | chr3_1:50883779-50883798 | Msa0360930:intron | 35.0% |
| TTCCTAGTGCAAAACTAGAT+AGG | + | chr3_1:50883784-50883803 | None:intergenic | 35.0% | |
| GCTTTGATTGCTTGAGAATA+CGG | + | chr3_1:50884389-50884408 | None:intergenic | 35.0% | |
| TGAGACAAATAGAAGGTTGT+TGG | + | chr3_1:50884411-50884430 | None:intergenic | 35.0% | |
| AACAACCTTCTATTTGTCTC+AGG | - | chr3_1:50884410-50884429 | Msa0360930:CDS | 35.0% | |
| ACACTGAATTATCAAACCTC+TGG | + | chr3_1:50884452-50884471 | None:intergenic | 35.0% | |
| ! | TTTTGTTCTCTAATGCAGAC+AGG | - | chr3_1:50884551-50884570 | Msa0360930:intron | 35.0% |
| TTTGTTCTCTAATGCAGACA+GGG | - | chr3_1:50884552-50884571 | Msa0360930:intron | 35.0% | |
| CCTTTCATGTTGTAGTATGT+GGG | - | chr3_1:50884641-50884660 | Msa0360930:CDS | 35.0% | |
| TACCTTGTCATCTTTCACTT+TGG | - | chr3_1:50884681-50884700 | Msa0360930:intron | 35.0% | |
| AAAACTCTCAATAGAATGCC+CGG | - | chr3_1:50884921-50884940 | Msa0360930:intron | 35.0% | |
| ATGGAAATACAACACCAAGA+CGG | + | chr3_1:50884952-50884971 | None:intergenic | 35.0% | |
| ATTGCAGGTTCTCAAAAACA+TGG | - | chr3_1:50885019-50885038 | Msa0360930:intron | 35.0% | |
| TTGCAGGTTCTCAAAAACAT+GGG | - | chr3_1:50885020-50885039 | Msa0360930:intron | 35.0% | |
| !! | AGTTTGGCTTTGTATTTGAG+TGG | - | chr3_1:50885124-50885143 | Msa0360930:intron | 35.0% |
| ATCATTCATTTCTTCCAGGT+TGG | - | chr3_1:50885168-50885187 | Msa0360930:intron | 35.0% | |
| ATTTCAATCTTGGCATCCAA+CGG | + | chr3_1:50885865-50885884 | None:intergenic | 35.0% | |
| TCAGGTCAAATAATACAGGA+CGG | - | chr3_1:50885949-50885968 | Msa0360930:CDS | 35.0% | |
| !!! | GGTCTTTTCTAGTTGAATCA+TGG | - | chr3_1:50886007-50886026 | Msa0360930:CDS | 35.0% |
| TCTAATTGCTCGTTTGTGTA+TGG | - | chr3_1:50886157-50886176 | Msa0360930:five_prime_UTR | 35.0% | |
| GAAAGGCTTAAGCAAAGGAA+GGG | + | chr3_1:50883064-50883083 | None:intergenic | 40.0% | |
| ! | GTGAAATGATGGGAACTTAC+GGG | + | chr3_1:50883095-50883114 | None:intergenic | 40.0% |
| TTCTCCAACAAGTTCATCCT+TGG | - | chr3_1:50883617-50883636 | Msa0360930:intron | 40.0% | |
| TCTCCAACAAGTTCATCCTT+GGG | - | chr3_1:50883618-50883637 | Msa0360930:intron | 40.0% | |
| TATGGACCCTTTGTGTTTGT+AGG | - | chr3_1:50883748-50883767 | Msa0360930:intron | 40.0% | |
| !! | CTTTAGGTTGAAAGCATGTC+TGG | - | chr3_1:50883988-50884007 | Msa0360930:intron | 40.0% |
| ACGTATCATTGTCGTGTCTT+TGG | - | chr3_1:50884087-50884106 | Msa0360930:intron | 40.0% | |
| TGGCTATGTAAATGCTCCAT+AGG | - | chr3_1:50884107-50884126 | Msa0360930:intron | 40.0% | |
| TGCACATGAACACCTACAAA+AGG | + | chr3_1:50884138-50884157 | None:intergenic | 40.0% | |
| CTACAAAGGAAGAGAGACAT+TGG | - | chr3_1:50884222-50884241 | Msa0360930:intron | 40.0% | |
| GCCTTTCATGTTGTAGTATG+TGG | - | chr3_1:50884640-50884659 | Msa0360930:CDS | 40.0% | |
| CCCACATACTACAACATGAA+AGG | + | chr3_1:50884644-50884663 | None:intergenic | 40.0% | |
| ATGACAAGGTACAGATGCTA+AGG | + | chr3_1:50884672-50884691 | None:intergenic | 40.0% | |
| AGCCAAAGTGAAAGATGACA+AGG | + | chr3_1:50884686-50884705 | None:intergenic | 40.0% | |
| ! | GCATCTCAAGCCCATAATTT+TGG | + | chr3_1:50884732-50884751 | None:intergenic | 40.0% |
| TGCAGGTTCTCAAAAACATG+GGG | - | chr3_1:50885021-50885040 | Msa0360930:intron | 40.0% | |
| CTTAACAACTGATGCATAGC+TGG | + | chr3_1:50885069-50885088 | None:intergenic | 40.0% | |
| !! | TTGGCTTTGTATTTGAGTGG+TGG | - | chr3_1:50885127-50885146 | Msa0360930:intron | 40.0% |
| ACTTAGCACATTCAGAAAGC+TGG | + | chr3_1:50885718-50885737 | None:intergenic | 40.0% | |
| ATCAGTTCACATCCAACTAC+TGG | - | chr3_1:50885974-50885993 | Msa0360930:CDS | 40.0% | |
| CCAAAGTAAACACCAGTAGT+TGG | + | chr3_1:50885989-50886008 | None:intergenic | 40.0% | |
| CCAACTACTGGTGTTTACTT+TGG | - | chr3_1:50885986-50886005 | Msa0360930:CDS | 40.0% | |
| GTGAGAAAGAAATGGCGTCA+TGG | - | chr3_1:50882900-50882919 | Msa0360930:three_prime_UTR | 45.0% | |
| GTTGATTGGTGGAATGTGGA+AGG | + | chr3_1:50882939-50882958 | None:intergenic | 45.0% | |
| AGAAGAAGATGAGCGCAACA+TGG | + | chr3_1:50883029-50883048 | None:intergenic | 45.0% | |
| GGAAAGGCTTAAGCAAAGGA+AGG | + | chr3_1:50883065-50883084 | None:intergenic | 45.0% | |
| CAGTGGAAAGGCTTAAGCAA+AGG | + | chr3_1:50883069-50883088 | None:intergenic | 45.0% | |
| ACTTACGGGTATCAGTGGAA+AGG | + | chr3_1:50883081-50883100 | None:intergenic | 45.0% | |
| CTCCAACAAGTTCATCCTTG+GGG | - | chr3_1:50883619-50883638 | Msa0360930:intron | 45.0% | |
| GAAGTACAAAGTAGTCCCCA+AGG | + | chr3_1:50883637-50883656 | None:intergenic | 45.0% | |
| !! | GTGTTGATCGGTGCTACATA+GGG | + | chr3_1:50883969-50883988 | None:intergenic | 45.0% |
| !! | AGTGTTGATCGGTGCTACAT+AGG | + | chr3_1:50883970-50883989 | None:intergenic | 45.0% |
| !! | GTAGCACCGATCAACACTTT+AGG | - | chr3_1:50883972-50883991 | Msa0360930:intron | 45.0% |
| CCTACAAAAGGTGAGTCCTA+TGG | + | chr3_1:50884126-50884145 | None:intergenic | 45.0% | |
| ! | CCATAGGACTCACCTTTTGT+AGG | - | chr3_1:50884123-50884142 | Msa0360930:intron | 45.0% |
| GGAAGCTGTTCAGACAGAAA+AGG | - | chr3_1:50884346-50884365 | Msa0360930:intron | 45.0% | |
| GGACACCTGAGACAAATAGA+AGG | + | chr3_1:50884418-50884437 | None:intergenic | 45.0% | |
| CTATTTGTCTCAGGTGTCCT+TGG | - | chr3_1:50884419-50884438 | Msa0360930:CDS | 45.0% | |
| !! | AAACCTCTGGAACAAGACCA+AGG | + | chr3_1:50884439-50884458 | None:intergenic | 45.0% |
| TAGGAAAACATCATGCAGCC+AGG | + | chr3_1:50884521-50884540 | None:intergenic | 45.0% | |
| TGTTGAAGATCAGACTGAGC+AGG | - | chr3_1:50884592-50884611 | Msa0360930:CDS | 45.0% | |
| !! | GGCTTGAGATGCTGTTTCAT+TGG | - | chr3_1:50884740-50884759 | Msa0360930:intron | 45.0% |
| GCAGGTTCTCAAAAACATGG+GGG | - | chr3_1:50885022-50885041 | Msa0360930:intron | 45.0% | |
| ACTAGATTCGCTCAGACACG+AGG | + | chr3_1:50882882-50882901 | None:intergenic | 50.0% | |
| TGGGAACTTACGGGTATCAG+TGG | + | chr3_1:50883086-50883105 | None:intergenic | 50.0% | |
| GTCCCCAAGGATGAACTTGT+TGG | + | chr3_1:50883624-50883643 | None:intergenic | 50.0% | |
| !! | TGTCCTTGGTCTTGTTCCAG+AGG | - | chr3_1:50884433-50884452 | Msa0360930:intron | 50.0% |
| GTGCAGTTGTGCACTTATCC+TGG | - | chr3_1:50884500-50884519 | Msa0360930:intron | 50.0% | |
| GCAGACAGGGAAGTTTGTCT+CGG | - | chr3_1:50884565-50884584 | Msa0360930:CDS | 50.0% | |
| AACACCAAGACGGAGTTACC+GGG | + | chr3_1:50884942-50884961 | None:intergenic | 50.0% | |
| CAACACCAAGACGGAGTTAC+CGG | + | chr3_1:50884943-50884962 | None:intergenic | 50.0% | |
| ATGGGGGAGATCCTGAAATC+TGG | - | chr3_1:50885038-50885057 | Msa0360930:intron | 50.0% | |
| TGGGGGAGATCCTGAAATCT+GGG | - | chr3_1:50885039-50885058 | Msa0360930:intron | 50.0% | |
| !! | TTCCAGGTTGGCTGACTTGA+AGG | - | chr3_1:50885180-50885199 | Msa0360930:intron | 50.0% |
| AATCTTGGCATCCAACGGCA+AGG | + | chr3_1:50885860-50885879 | None:intergenic | 50.0% | |
| CTCAGACACGAGGCAGTTCA+CGG | + | chr3_1:50882872-50882891 | None:intergenic | 55.0% | |
| !! | CGGCGTTGATTGGTGGAATG+TGG | + | chr3_1:50882943-50882962 | None:intergenic | 55.0% |
| TGATACGACGCTGACACACG+TGG | - | chr3_1:50884021-50884040 | Msa0360930:intron | 55.0% | |
| TCAGACAGAAAAGGCCCCAG+CGG | - | chr3_1:50884355-50884374 | Msa0360930:intron | 55.0% | |
| AATACGGTCCCAATGCCGCT+GGG | + | chr3_1:50884373-50884392 | None:intergenic | 55.0% | |
| AATGCCCGGTAACTCCGTCT+TGG | - | chr3_1:50884935-50884954 | Msa0360930:intron | 55.0% | |
| GGGGGAGATCCTGAAATCTG+GGG | - | chr3_1:50885040-50885059 | Msa0360930:intron | 55.0% | |
| GGGGAGATCCTGAAATCTGG+GGG | - | chr3_1:50885041-50885060 | Msa0360930:intron | 55.0% | |
| GTCCTTCAAGTCAGCCAACC+TGG | + | chr3_1:50885185-50885204 | None:intergenic | 55.0% | |
| TTGATACGTCGCACGAGCTG+GGG | + | chr3_1:50885830-50885849 | None:intergenic | 55.0% | |
| CTTGATACGTCGCACGAGCT+GGG | + | chr3_1:50885831-50885850 | None:intergenic | 55.0% | |
| ACTTGATACGTCGCACGAGC+TGG | + | chr3_1:50885832-50885851 | None:intergenic | 55.0% | |
| TCAAGTAGCTGCCTTGCCGT+TGG | - | chr3_1:50885846-50885865 | Msa0360930:intron | 55.0% | |
| TGGCGTCATGGTGTGCAGCA+AGG | - | chr3_1:50882912-50882931 | Msa0360930:three_prime_UTR | 60.0% | |
| !! | AGAACGGCGGCGTTGATTGG+TGG | + | chr3_1:50882950-50882969 | None:intergenic | 60.0% |
| !! | TGGAGAACGGCGGCGTTGAT+TGG | + | chr3_1:50882953-50882972 | None:intergenic | 60.0% |
| !! | AACGGAGACTCCGCCGATTC+CGG | + | chr3_1:50882996-50883015 | None:intergenic | 60.0% |
| !! | CAACATGGCAGTGCCGGCAA+CGG | + | chr3_1:50883014-50883033 | None:intergenic | 60.0% |
| TGAGCGCAACATGGCAGTGC+CGG | + | chr3_1:50883020-50883039 | None:intergenic | 60.0% | |
| AGAAAAGGCCCCAGCGGCAT+TGG | - | chr3_1:50884361-50884380 | Msa0360930:intron | 60.0% | |
| GAAAAGGCCCCAGCGGCATT+GGG | - | chr3_1:50884362-50884381 | Msa0360930:intron | 60.0% | |
| ATACGGTCCCAATGCCGCTG+GGG | + | chr3_1:50884372-50884391 | None:intergenic | 60.0% | |
| GAATACGGTCCCAATGCCGC+TGG | + | chr3_1:50884374-50884393 | None:intergenic | 60.0% | |
| AGCTGGCACCCCCAGATTTC+AGG | + | chr3_1:50885052-50885071 | None:intergenic | 60.0% | |
| TCAACGCCGCCGTTCTCCAC+CGG | - | chr3_1:50882954-50882973 | Msa0360930:three_prime_UTR | 65.0% | |
| ! | TGAAGCGCGCCGGTGGAGAA+CGG | + | chr3_1:50882966-50882985 | None:intergenic | 65.0% |
| TTCTCCACCGGCGCGCTTCA+TGG | - | chr3_1:50882966-50882985 | Msa0360930:three_prime_UTR | 65.0% | |
| TCTCCACCGGCGCGCTTCAT+GGG | - | chr3_1:50882967-50882986 | Msa0360930:three_prime_UTR | 65.0% | |
| GCTTCATGGGCCGCCGGAAT+CGG | - | chr3_1:50882980-50882999 | Msa0360930:three_prime_UTR | 65.0% | |
| ATCGGCGGAGTCTCCGTTGC+CGG | - | chr3_1:50882998-50883017 | Msa0360930:three_prime_UTR | 65.0% | |
| TCATGGGCCGCCGGAATCGG+CGG | - | chr3_1:50882983-50883002 | Msa0360930:three_prime_UTR | 70.0% | |
| !! | GGAGACTCCGCCGATTCCGG+CGG | + | chr3_1:50882993-50883012 | None:intergenic | 70.0% |
| GCACGAGCTGGGGCAGGTGA+AGG | + | chr3_1:50885820-50885839 | None:intergenic | 70.0% | |
| TACGTCGCACGAGCTGGGGC+AGG | + | chr3_1:50885826-50885845 | None:intergenic | 70.0% | |
| ! | AGCGCGCCGGTGGAGAACGG+CGG | + | chr3_1:50882963-50882982 | None:intergenic | 75.0% |
| ! | CGGCCCATGAAGCGCGCCGG+TGG | + | chr3_1:50882973-50882992 | None:intergenic | 80.0% |
| ! | CGGCGGCCCATGAAGCGCGC+CGG | + | chr3_1:50882976-50882995 | None:intergenic | 80.0% |
| ! | CGGCGCGCTTCATGGGCCGC+CGG | - | chr3_1:50882974-50882993 | Msa0360930:three_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 50882800 | 50886215 | 50882800 | ID=Msa0360930;Name=Msa0360930 |
| chr3_1 | mRNA | 50882800 | 50886215 | 50882800 | ID=Msa0360930-mRNA-1;Parent=Msa0360930;Name=Msa0360930-mRNA-1;_AED=0.14;_eAED=0.14;_QI=111|1|1|1|1|1|6|309|188 |
| chr3_1 | exon | 50882800 | 50883203 | 50882800 | ID=Msa0360930-mRNA-1:exon:9010;Parent=Msa0360930-mRNA-1 |
| chr3_1 | exon | 50883780 | 50883829 | 50883780 | ID=Msa0360930-mRNA-1:exon:9009;Parent=Msa0360930-mRNA-1 |
| chr3_1 | exon | 50883916 | 50883989 | 50883916 | ID=Msa0360930-mRNA-1:exon:9008;Parent=Msa0360930-mRNA-1 |
| chr3_1 | exon | 50884402 | 50884446 | 50884402 | ID=Msa0360930-mRNA-1:exon:9007;Parent=Msa0360930-mRNA-1 |
| chr3_1 | exon | 50884561 | 50884679 | 50884561 | ID=Msa0360930-mRNA-1:exon:9006;Parent=Msa0360930-mRNA-1 |
| chr3_1 | exon | 50885921 | 50886215 | 50885921 | ID=Msa0360930-mRNA-1:exon:9005;Parent=Msa0360930-mRNA-1 |
| chr3_1 | five_prime_UTR | 50886105 | 50886215 | 50886105 | ID=Msa0360930-mRNA-1:five_prime_utr;Parent=Msa0360930-mRNA-1 |
| chr3_1 | CDS | 50885921 | 50886104 | 50885921 | ID=Msa0360930-mRNA-1:cds;Parent=Msa0360930-mRNA-1 |
| chr3_1 | CDS | 50884561 | 50884679 | 50884561 | ID=Msa0360930-mRNA-1:cds;Parent=Msa0360930-mRNA-1 |
| chr3_1 | CDS | 50884402 | 50884446 | 50884402 | ID=Msa0360930-mRNA-1:cds;Parent=Msa0360930-mRNA-1 |
| chr3_1 | CDS | 50883916 | 50883989 | 50883916 | ID=Msa0360930-mRNA-1:cds;Parent=Msa0360930-mRNA-1 |
| chr3_1 | CDS | 50883780 | 50883829 | 50883780 | ID=Msa0360930-mRNA-1:cds;Parent=Msa0360930-mRNA-1 |
| chr3_1 | CDS | 50883109 | 50883203 | 50883109 | ID=Msa0360930-mRNA-1:cds;Parent=Msa0360930-mRNA-1 |
| chr3_1 | three_prime_UTR | 50882800 | 50883108 | 50882800 | ID=Msa0360930-mRNA-1:three_prime_utr;Parent=Msa0360930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
