AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0408510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408510 MtrunA17_Chr3g0099251 88.750 720 50 3 1 694 2 716 0.0 1305
Msa0408510 MtrunA17_Chr1g0194381 90.818 697 55 4 1 694 1 691 0.0 1303
Msa0408510 MtrunA17_Chr4g0044491 83.070 697 77 4 1 694 1 659 0.0 1161
Msa0408510 MtrunA17_Chr1g0211961 53.014 647 281 7 46 691 526 1150 0.0 714
Msa0408510 MtrunA17_Chr1g0156271 52.705 647 283 6 46 691 561 1185 0.0 711
Msa0408510 MtrunA17_Chr3g0086391 50.875 686 298 12 13 694 382 1032 0.0 678
Msa0408510 MtrunA17_Chr2g0283271 46.188 669 318 10 48 694 46 694 0.0 588
Msa0408510 MtrunA17_Chr3g0100131 43.519 648 343 7 48 691 585 1213 0.0 587
Msa0408510 MtrunA17_Chr2g0329131 43.519 648 343 7 48 691 564 1192 0.0 584
Msa0408510 MtrunA17_Chr7g0259941 40.788 711 341 11 42 694 35 723 3.81e-179 528
Msa0408510 MtrunA17_Chr8g0359501 40.647 711 342 11 42 694 35 723 2.66e-177 523
Msa0408510 MtrunA17_Chr8g0377111 40.798 652 348 12 54 687 3 634 3.60e-168 498
Msa0408510 MtrunA17_Chr5g0432591 57.041 419 158 5 45 459 199 599 3.27e-162 480
Msa0408510 MtrunA17_Chr6g0476001 56.704 358 135 4 48 403 247 586 7.84e-135 409
Msa0408510 MtrunA17_Chr1g0177141 34.795 707 364 19 52 679 265 953 2.68e-101 333
Msa0408510 MtrunA17_Chr8g0355291 31.550 729 402 17 36 685 233 943 7.24e-92 309
Msa0408510 MtrunA17_Chr3g0082091 32.357 649 376 15 72 689 4 620 3.56e-90 307
Msa0408510 MtrunA17_Chr1g0164621 32.412 651 375 16 72 689 4 622 4.58e-90 307
Msa0408510 MtrunA17_Chr3g0123681 30.540 704 427 16 14 689 230 899 1.75e-89 306
Msa0408510 MtrunA17_Chr3g0100151 47.431 253 127 2 326 578 27 273 9.71e-72 234
Msa0408510 MtrunA17_Chr8g0354481 50.962 208 91 3 161 368 1 197 1.28e-62 207
Msa0408510 MtrunA17_Chr3g0100171 42.000 250 143 1 372 621 49 296 1.17e-61 213
Msa0408510 MtrunA17_Chr8g0359451 43.983 241 88 2 71 269 30 265 1.90e-58 199
Msa0408510 MtrunA17_Chr4g0010901 40.288 278 139 4 47 297 264 541 6.48e-55 204
Msa0408510 MtrunA17_Chr4g0010901 27.637 474 246 10 305 688 690 1156 1.16e-39 157
Msa0408510 MtrunA17_Chr1g0208961 31.529 425 259 12 270 679 608 1015 1.26e-54 202
Msa0408510 MtrunA17_Chr1g0208961 45.498 211 110 3 36 246 313 518 2.72e-46 177
Msa0408510 MtrunA17_Chr8g0392581 30.275 436 269 12 267 685 551 968 9.58e-52 194
Msa0408510 MtrunA17_Chr8g0392581 44.811 212 112 3 36 247 257 463 4.24e-47 180
Msa0408510 MtrunA17_Chr5g0432601 42.381 210 113 5 487 693 1 205 1.25e-48 170
Msa0408510 MtrunA17_Chr0c12g0493631 29.498 478 252 13 270 679 151 611 2.77e-46 175
Msa0408510 MtrunA17_Chr6g0475991 36.885 244 116 5 453 693 1 209 9.14e-46 163
Msa0408510 MtrunA17_Chr1g0195601 30.702 456 263 14 55 475 30 467 2.89e-45 174
Msa0408510 MtrunA17_Chr5g0442401 31.771 384 233 9 260 629 544 912 7.83e-43 167
Msa0408510 MtrunA17_Chr5g0442401 36.232 207 117 3 52 247 184 386 9.34e-36 145
Msa0408510 MtrunA17_Chr4g0067511 28.118 473 244 10 305 688 339 804 1.88e-39 156
Msa0408510 MtrunA17_Chr4g0067511 37.821 156 70 3 169 297 35 190 8.90e-22 100
Msa0408510 MtrunA17_Chr4g0077061 39.535 215 119 3 42 247 592 804 3.53e-37 149
Msa0408510 MtrunA17_Chr4g0077061 37.156 218 116 3 339 554 953 1151 1.82e-33 138
Msa0408510 MtrunA17_Chr8g0354491 44.681 141 76 2 465 603 1 141 3.49e-36 133
Msa0408510 MtrunA17_Chr8g0354471 59.633 109 38 2 46 153 100 203 1.08e-35 134
Msa0408510 MtrunA17_Chr8g0355531 34.722 144 91 2 385 526 3 145 2.92e-24 99.8
Msa0408510 MtrunA17_Chr4g0067501 47.368 57 30 0 108 164 31 87 8.87e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408510 AT3G62310.1 84.000 700 101 5 1 694 1 695 0.0 1225
Msa0408510 AT2G47250.1 82.861 706 102 5 1 694 1 699 0.0 1210
Msa0408510 AT3G62310.3 83.681 527 76 3 1 521 1 523 0.0 902
Msa0408510 AT3G62310.2 83.114 533 79 4 1 526 1 529 0.0 899
Msa0408510 AT3G26560.1 53.168 647 280 7 46 691 506 1130 0.0 707
Msa0408510 AT1G32490.2 51.920 651 288 10 47 694 386 1014 0.0 694
Msa0408510 AT1G32490.1 51.920 651 288 10 47 694 396 1024 0.0 693
Msa0408510 AT2G35340.1 52.000 650 283 11 50 694 399 1024 0.0 684
Msa0408510 AT2G35340.2 52.000 650 283 11 50 694 261 886 0.0 684
Msa0408510 AT4G16680.2 50.998 651 287 9 50 694 130 754 0.0 659
Msa0408510 AT5G13010.1 43.981 648 340 7 48 691 551 1179 0.0 591
Msa0408510 AT4G18465.1 45.373 670 325 10 45 693 38 687 0.0 583
Msa0408510 AT1G26370.1 41.210 711 334 13 40 691 27 712 3.90e-173 512
Msa0408510 AT1G27900.1 39.816 653 356 11 55 687 4 639 1.20e-165 493
Msa0408510 AT4G16680.1 56.351 433 168 4 50 482 210 621 1.97e-164 488
Msa0408510 AT1G27900.3 41.848 552 295 8 55 597 4 538 4.99e-155 459
Msa0408510 AT1G27900.2 41.727 556 298 8 55 601 4 542 5.22e-155 460
Msa0408510 AT5G14900.1 73.507 268 67 3 430 694 2 268 1.13e-142 419
Msa0408510 AT1G48650.2 34.410 712 362 20 52 679 296 986 6.04e-103 341
Msa0408510 AT1G48650.1 34.410 712 362 20 52 679 296 986 6.86e-103 341
Msa0408510 AT5G10370.1 31.404 691 401 18 41 691 286 943 3.74e-92 315
Msa0408510 AT4G01020.1 32.537 670 387 17 55 691 303 940 5.65e-91 311
Msa0408510 AT2G35920.2 35.504 476 262 17 221 679 408 855 5.03e-64 229
Msa0408510 AT2G35920.2 43.939 198 105 2 52 247 167 360 1.36e-43 169
Msa0408510 AT2G35920.1 35.504 476 262 17 221 679 466 913 6.98e-64 229
Msa0408510 AT2G35920.1 43.939 198 105 2 52 247 225 418 1.63e-43 169
Msa0408510 AT2G35920.3 35.504 476 262 17 221 679 498 945 1.50e-63 229
Msa0408510 AT2G35920.3 43.939 198 105 2 52 247 257 450 1.79e-43 169
Msa0408510 AT1G33390.2 29.297 512 269 12 244 688 597 1082 1.03e-52 197
Msa0408510 AT1G33390.2 38.384 297 149 4 43 308 229 522 3.92e-51 192
Msa0408510 AT1G33390.1 29.297 512 269 12 244 688 597 1082 1.03e-52 197
Msa0408510 AT1G33390.1 38.384 297 149 4 43 308 229 522 3.92e-51 192
Msa0408510 AT2G01130.2 27.704 527 324 16 172 677 349 839 1.14e-52 197
Msa0408510 AT2G01130.2 45.000 200 108 2 48 247 148 345 9.82e-45 173
Msa0408510 AT2G01130.1 27.704 527 324 16 172 677 414 904 1.94e-52 196
Msa0408510 AT2G01130.1 45.000 200 108 2 48 247 213 410 1.19e-44 173
Msa0408510 AT5G04895.1 32.009 428 260 11 267 679 537 948 2.31e-47 181
Msa0408510 AT5G04895.1 44.500 200 109 2 48 247 253 450 1.74e-44 172
Msa0408510 AT1G58060.1 28.541 473 258 12 270 677 916 1373 1.79e-43 169
Msa0408510 AT1G58060.1 39.189 222 117 4 39 247 598 814 1.97e-37 151
Msa0408510 AT1G58050.1 32.286 350 203 10 270 598 883 1219 2.29e-41 163
Msa0408510 AT1G58050.1 37.719 228 119 6 44 256 586 805 1.07e-35 145
Msa0408510 AT2G30800.1 39.216 204 118 2 47 247 179 379 6.80e-40 158
Msa0408510 AT2G30800.1 31.117 376 226 10 270 629 552 910 3.01e-39 156
Msa0408510 AT2G30800.2 31.117 376 226 10 270 629 209 567 3.20e-39 156
Msa0408510 AT1G06670.1 37.981 208 122 3 44 247 205 409 1.14e-38 155
Msa0408510 AT1G06670.1 31.728 353 208 10 254 589 556 892 6.85e-37 149
Msa0408510 AT1G06670.2 38.462 208 121 3 44 247 205 409 1.37e-38 154
Msa0408510 AT1G06670.2 31.728 353 208 10 254 589 556 892 5.63e-37 149
Msa0408510 AT2G47680.1 29.216 421 238 10 54 439 25 420 8.37e-37 148

Find 158 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGAAGTAGTTGCAAATT+TGG 0.141933 3_2:+48413367 Msa0408510:CDS
AGTTCTTACTTTGAAGAAAT+TGG 0.149859 3_2:+48413793 Msa0408510:CDS
TACAAGGTACTTCGAGATTT+TGG 0.161729 3_2:+48411070 Msa0408510:CDS
ATCATCTTCTTGTATTTATC+TGG 0.204394 3_2:-48412332 None:intergenic
ATGACAACTTTGTTAATTAT+AGG 0.214478 3_2:+48414197 Msa0408510:CDS
AGTTCGTGTTGAGTCTTTAT+TGG 0.226938 3_2:+48413613 Msa0408510:CDS
TCAGAAGTAGTTGCAAATTT+GGG 0.271066 3_2:+48413368 Msa0408510:CDS
AGATTAGATCTCAAAATTTC+AGG 0.273158 3_2:-48413761 None:intergenic
TTGGCTACAGATGTGTTATT+TGG 0.275009 3_2:+48413050 Msa0408510:CDS
GAAATGCTTTAGACTTTATA+CGG 0.280548 3_2:+48413700 Msa0408510:CDS
TGACAACTTTGTTAATTATA+GGG 0.289407 3_2:+48414198 Msa0408510:CDS
AGCAATGACGGATCCACTTT+TGG 0.303630 3_2:+48412983 Msa0408510:CDS
AAAATTAACGGCGGTTTAAT+CGG 0.316079 3_2:+48411017 Msa0408510:CDS
TCTTTAACTGGAGGAGGAGC+TGG 0.333089 3_2:-48413467 None:intergenic
TGCGCACTAGCCTTTGATAT+TGG 0.337811 3_2:-48413641 None:intergenic
GATTACTTGGAGGCTGCTAT+TGG 0.348967 3_2:+48413239 Msa0408510:CDS
TTCATTATAGATAACCCATT+CGG 0.367508 3_2:-48414458 None:intergenic
ACCTTCTGCTTTGCCAATCC+AGG 0.369085 3_2:-48413578 None:intergenic
GGAGGGCCTCCCTCTTTAAC+TGG 0.375040 3_2:-48413479 None:intergenic
TGAGACCTTAATGCGCGCTT+TGG 0.376030 3_2:+48413862 Msa0408510:CDS
CGTAGTCGACAACGACTCTA+TGG 0.376505 3_2:+48410983 Msa0408510:CDS
CCCATTCGGGCTTGTGGTCT+AGG 0.378505 3_2:-48414444 None:intergenic
GTTCTTACTTTGAAGAAATT+GGG 0.379844 3_2:+48413794 Msa0408510:CDS
GCTAGTGCGCATCAGAGATC+TGG 0.381481 3_2:+48413653 Msa0408510:CDS
GATACCACAATCTTCCTTCC+AGG 0.382569 3_2:-48413500 None:intergenic
CGCATTAAGGTCTCAGGTGC+AGG 0.393564 3_2:-48413854 None:intergenic
TAGCTGTTGTCGAACATTAT+CGG 0.393619 3_2:-48414233 None:intergenic
GTTTAATCGGCCACAACCGC+TGG 0.400264 3_2:+48411030 Msa0408510:CDS
AAAACAATGAGGATGCTTCT+TGG 0.404378 3_2:+48414170 Msa0408510:CDS
GTTAAAGAGGGAGGCCCTCC+TGG 0.415850 3_2:+48413482 Msa0408510:CDS
CACTTCCAAAGCGCGCATTA+AGG 0.416098 3_2:-48413867 None:intergenic
GCCCGTCTTATGAAAGTTCC+AGG 0.416721 3_2:+48413170 Msa0408510:CDS
TTTGGAAGTGTTAAATTACT+TGG 0.417893 3_2:+48413880 Msa0408510:CDS
TCGAAGTACCTTGTAGAGTA+AGG 0.423816 3_2:-48411062 None:intergenic
AAAATCTTCTGCTGCATAGC+CGG 0.425489 3_2:-48413440 None:intergenic
TCATTATAGATAACCCATTC+GGG 0.427898 3_2:-48414457 None:intergenic
TCATCTTTCTGCTGCCAAAC+GGG 0.430202 3_2:-48411110 None:intergenic
GAAGGTAACTTAACAAAGTT+GGG 0.430890 3_2:+48413917 Msa0408510:CDS
GCAGCTATTTGTGCCTCCTT+AGG 0.431681 3_2:-48414070 None:intergenic
ATAACAACCAACTTCAAATC+AGG 0.434270 3_2:-48413101 None:intergenic
AAATCTTCTGCTGCATAGCC+GGG 0.436768 3_2:-48413439 None:intergenic
TGAAGGTAACTTAACAAAGT+TGG 0.440141 3_2:+48413916 Msa0408510:CDS
CATCAGAGATCTGGGCGTGC+TGG 0.442454 3_2:+48413662 Msa0408510:CDS
ATCATCTTTCTGCTGCCAAA+CGG 0.443772 3_2:-48411111 None:intergenic
AGAACCACAAACAGATTACT+TGG 0.448099 3_2:+48413226 Msa0408510:CDS
GCCTCCAAGTAATCTGTTTG+TGG 0.449086 3_2:-48413230 None:intergenic
AGAGGAAAACCCTTCCCGTT+TGG 0.451777 3_2:+48411096 Msa0408510:CDS
TGTGTTATTTGGCCTTCTTA+AGG 0.456171 3_2:+48413061 Msa0408510:CDS
ATTACTTGGAGGCTGCTATT+GGG 0.460428 3_2:+48413240 Msa0408510:CDS
CTTCAAAGTAAGAACTGTGT+TGG 0.460613 3_2:-48413786 None:intergenic
AGCCACCTGCATGAAATATC+CGG 0.462962 3_2:-48414347 None:intergenic
CCGCCGCGTGGCTGAAGAGA+TGG 0.470359 3_2:+48412400 Msa0408510:CDS
TTGTGGTCTAGGCAATTTGA+TGG 0.472349 3_2:-48414433 None:intergenic
ACTTTGTATCGTTCCAAAAG+TGG 0.474402 3_2:-48412996 None:intergenic
TAAAATGGTGCTACAGATCA+TGG 0.474882 3_2:-48414561 None:intergenic
AAACAGACCTGATTTGAAGT+TGG 0.479993 3_2:+48413094 Msa0408510:CDS
ATTCACACGCTTGAACCTGC+TGG 0.481478 3_2:+48413275 Msa0408510:CDS
CCCTGGATTGGCAAAGCAGA+AGG 0.486863 3_2:+48413577 Msa0408510:CDS
CTCGTTGGTGAGACCGGTAG+TGG 0.487818 3_2:+48411170 Msa0408510:CDS
TACAATGGTACAACTTTCAC+AGG 0.491989 3_2:-48413404 None:intergenic
AGCTCCTCCTCCAGTTAAAG+AGG 0.495297 3_2:+48413469 Msa0408510:CDS
GCTAAGACGGTGAAAATTAA+CGG 0.495580 3_2:+48411005 Msa0408510:CDS
CAGTACCCAACTGCTTTATC+CGG 0.501293 3_2:+48414047 Msa0408510:CDS
CTTTCTGCTGCCAAACGGGA+AGG 0.504024 3_2:-48411106 None:intergenic
TTGATTCTCGTTGGTGAGAC+CGG 0.511897 3_2:+48411164 Msa0408510:CDS
GTGAGTATTGGTGAAGAGGT+TGG 0.513659 3_2:+48412425 Msa0408510:CDS
AAAGCGCGCATTAAGGTCTC+AGG 0.513793 3_2:-48413860 None:intergenic
CATCTCTTCAGCCACGCGGC+GGG 0.514778 3_2:-48412399 None:intergenic
TTGGAAGTGTTAAATTACTT+GGG 0.517491 3_2:+48413881 Msa0408510:CDS
ACCTGGAACTTTCATAAGAC+GGG 0.519852 3_2:-48413171 None:intergenic
AGATCTCAAAATTTCAGGAT+AGG 0.521883 3_2:-48413756 None:intergenic
CTGCGGATGAAGCGAAAGCT+AGG 0.523995 3_2:+48414089 Msa0408510:CDS
TGAGGCACATGAAAGGACTT+TGG 0.527365 3_2:+48413031 Msa0408510:CDS
CTATTTGTGCCTCCTTAGGC+CGG 0.527844 3_2:-48414066 None:intergenic
GCCTAGACCACAAGCCCGAA+TGG 0.527994 3_2:+48414443 Msa0408510:CDS
ATCGGCCACAACCGCTGGAA+CGG 0.531940 3_2:+48411035 Msa0408510:CDS
CTACTACGTCAATATAAGAA+AGG 0.532666 3_2:+48414315 Msa0408510:CDS
AGATAACCCATTCGGGCTTG+TGG 0.532896 3_2:-48414450 None:intergenic
CTTAGGCCGGATAAAGCAGT+TGG 0.533039 3_2:-48414053 None:intergenic
CTATGTTGTTGACCCTGGAT+TGG 0.533065 3_2:+48413565 Msa0408510:CDS
CCTAGACCACAAGCCCGAAT+GGG 0.538287 3_2:+48414444 Msa0408510:CDS
GTTAAATTACTTGGGTGCAA+TGG 0.538893 3_2:+48413889 Msa0408510:CDS
ATAAGAAAGGCAATGCTAGC+CGG 0.539169 3_2:+48414328 Msa0408510:CDS
CCTCCCTCTTTAACTGGAGG+AGG 0.540067 3_2:-48413473 None:intergenic
TCAGCATAGAAAATTTCCAC+TGG 0.541751 3_2:-48413203 None:intergenic
TTTCTGCTGCCAAACGGGAA+GGG 0.544156 3_2:-48411105 None:intergenic
CTAGTGCGCATCAGAGATCT+GGG 0.545232 3_2:+48413654 Msa0408510:CDS
ATAGTCTATGTTGTTGACCC+TGG 0.549931 3_2:+48413560 Msa0408510:CDS
ATTGTATTCTACTCTTCCCC+CGG 0.550773 3_2:+48413421 Msa0408510:CDS
TCCAGGTAGGTTACATCCAG+TGG 0.553901 3_2:+48413187 Msa0408510:CDS
TAAAGTCTAAAGCATTTCCC+TGG 0.554376 3_2:-48413695 None:intergenic
TCCACTGGATGTAACCTACC+TGG 0.555689 3_2:-48413188 None:intergenic
ACAACAGCTAGTGCGTATCA+TGG 0.558197 3_2:+48414246 Msa0408510:CDS
CTTTAACTGGAGGAGGAGCT+GGG 0.560680 3_2:-48413466 None:intergenic
AGCTAGTGCGTATCATGGCT+CGG 0.562361 3_2:+48414251 Msa0408510:CDS
ATTGGTGTCTCCAATATCAA+AGG 0.563014 3_2:+48413631 Msa0408510:CDS
GATTATGAGTGAGTTTCCGT+TGG 0.563935 3_2:+48413943 Msa0408510:CDS
AAAACAAGTATGTCTCCAGC+AGG 0.564551 3_2:-48413290 None:intergenic
CAACTGCTTTATCCGGCCTA+AGG 0.565176 3_2:+48414054 Msa0408510:CDS
CCTTCTGCTTTGCCAATCCA+GGG 0.567284 3_2:-48413577 None:intergenic
ATGAATATGTTCTTACGAGT+CGG 0.567963 3_2:+48414476 Msa0408510:CDS
CAGAAGTAGTTGCAAATTTG+GGG 0.570171 3_2:+48413369 Msa0408510:CDS
ACGGAAAACCTTACTCTACA+AGG 0.571955 3_2:+48411054 Msa0408510:CDS
TACCTGGAACTTTCATAAGA+CGG 0.575168 3_2:-48413172 None:intergenic
GCTAGGTTTGCACACATCGA+TGG 0.576129 3_2:+48414106 Msa0408510:CDS
AAGAGGGAGGCCCTCCTGGA+AGG 0.576496 3_2:+48413486 Msa0408510:CDS
CAAAGTGATTATTCTTGATG+AGG 0.576742 3_2:+48413013 Msa0408510:CDS
TTCTTATATTGACGTAGTAG+TGG 0.576812 3_2:-48414312 None:intergenic
GGGTACGGCAAGGAAGAGAA+AGG 0.576955 3_2:+48410947 Msa0408510:CDS
GGATGTGAGTATTGGTGAAG+AGG 0.579721 3_2:+48412421 Msa0408510:CDS
TCGTTTGAACAGTTGAACTC+AGG 0.579830 3_2:-48413998 None:intergenic
CGTGCTGGAAGAACACAACC+AGG 0.580489 3_2:+48413677 Msa0408510:CDS
GAAACTTCATTGACAATCGA+TGG 0.586328 3_2:+48413536 Msa0408510:CDS
ACAAGCATCTTTGACATCTG+AGG 0.589350 3_2:-48413968 None:intergenic
CTGCTTTATCCGGCCTAAGG+AGG 0.589664 3_2:+48414057 Msa0408510:CDS
AATCTTCTGCTGCATAGCCG+GGG 0.593816 3_2:-48413438 None:intergenic
ACCACAAACAGATTACTTGG+AGG 0.594407 3_2:+48413229 Msa0408510:CDS
ATGCACTCAGCCACGTAGAG+TGG 0.594987 3_2:+48412361 Msa0408510:CDS
TTCTTGATGAGGCACATGAA+AGG 0.595611 3_2:+48413024 Msa0408510:CDS
CTTGACAGTTAAAGACAAGC+AGG 0.596759 3_2:+48414396 Msa0408510:CDS
AGCCGGATATTTCATGCAGG+TGG 0.598664 3_2:+48414345 Msa0408510:CDS
AAAGACTCAACACGAACTCG+AGG 0.601959 3_2:-48413608 None:intergenic
CAACGACTCTATGGCTAAGA+CGG 0.603097 3_2:+48410992 Msa0408510:CDS
CAAGCATCTTTGACATCTGA+GGG 0.603507 3_2:-48413967 None:intergenic
GAAGAGATGGATGTGAGTAT+TGG 0.604505 3_2:+48412413 Msa0408510:CDS
TTAGGCCGGATAAAGCAGTT+GGG 0.608800 3_2:-48414052 None:intergenic
TTTGACATCTGAGGGTCCAA+CGG 0.616105 3_2:-48413959 None:intergenic
CAGCTTCTAAAACGAACTGA+GGG 0.619508 3_2:-48412295 None:intergenic
TGACAGATATACGTGGTGAA+TGG 0.626358 3_2:+48414515 Msa0408510:CDS
GCTAGCCGGATATTTCATGC+AGG 0.630136 3_2:+48414342 Msa0408510:CDS
CCATCTCTTCAGCCACGCGG+CGG 0.630747 3_2:-48412400 None:intergenic
GCTCCTCCTCCAGTTAAAGA+GGG 0.631658 3_2:+48413470 Msa0408510:CDS
GGAGGCTGCTATTGGGACAG+TGG 0.633412 3_2:+48413247 Msa0408510:CDS
GTCTTATGAAAGTTCCAGGT+AGG 0.637788 3_2:+48413174 Msa0408510:CDS
GGGCCTCCCTCTTTAACTGG+AGG 0.641108 3_2:-48413476 None:intergenic
CCCTCCTGGAAGGAAGATTG+TGG 0.642322 3_2:+48413496 Msa0408510:CDS
ACAGCTTCTAAAACGAACTG+AGG 0.643410 3_2:-48412296 None:intergenic
ATTAAGGTCTCAGGTGCAGG+AGG 0.644515 3_2:-48413851 None:intergenic
TTGGGTGCAATGGATGATGA+AGG 0.644639 3_2:+48413899 Msa0408510:CDS
GACATTGCAGCCACTCTACG+TGG 0.649221 3_2:-48412371 None:intergenic
ATCTTCTGCTGCATAGCCGG+GGG 0.659970 3_2:-48413437 None:intergenic
CGGTAGTGGCAAAACAACCC+AGG 0.660141 3_2:+48411184 Msa0408510:CDS
AAGACTCAACACGAACTCGA+GGG 0.660298 3_2:-48413607 None:intergenic
ACCACAATCTTCCTTCCAGG+AGG 0.661706 3_2:-48413497 None:intergenic
AGAAGTAGTTGCAAATTTGG+GGG 0.665203 3_2:+48413370 Msa0408510:CDS
CCACAATCTTCCTTCCAGGA+GGG 0.665684 3_2:-48413496 None:intergenic
AAAATTTCAGGATAGGTCTG+CGG 0.670474 3_2:-48413749 None:intergenic
CCTCCTCCAGTTAAAGAGGG+AGG 0.672691 3_2:+48413473 Msa0408510:CDS
AATGTCTGTTTCCCGCCGCG+TGG 0.674837 3_2:+48412388 Msa0408510:CDS
TAAGGAGGCACAAATAGCTG+CGG 0.678653 3_2:+48414072 Msa0408510:CDS
TGCTACAGATCATGGTAATG+TGG 0.682784 3_2:-48414553 None:intergenic
TGCCTACAAGCAAAACAATG+AGG 0.686666 3_2:+48414159 Msa0408510:CDS
GCTCATCTTGATCAGCAGAG+AGG 0.708504 3_2:+48414367 Msa0408510:CDS
CGTACTGTGACAGATATACG+TGG 0.732647 3_2:+48414508 Msa0408510:CDS
CATCCATCTCTTCAGCCACG+CGG 0.759154 3_2:-48412403 None:intergenic
ACAATGGTACAACTTTCACA+GGG 0.759539 3_2:-48413403 None:intergenic
AAGACGGTGAAAATTAACGG+CGG 0.763060 3_2:+48411008 Msa0408510:CDS
GTGCTGGAAGAACACAACCA+GGG 0.766690 3_2:+48413678 Msa0408510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACTAACTTTTAAAATCAT+CGG - chr3_2:48412631-48412650 None:intergenic 15.0%
!!! AAAATAACTCTTAAACTTTT+CGG - chr3_2:48413144-48413163 None:intergenic 15.0%
!!! AAGTTTAAGAGTTATTTTTT+TGG + chr3_2:48413146-48413165 Msa0408510:CDS 15.0%
!!! TGATTTTTTGAAGGTTTTTA+AGG + chr3_2:48411130-48411149 Msa0408510:CDS 20.0%
!!! ATGTATCTTATTTGTTTGTT+AGG + chr3_2:48411380-48411399 Msa0408510:intron 20.0%
!! TAAAAATAACCTATATGATC+AGG + chr3_2:48411860-48411879 Msa0408510:intron 20.0%
!! AGAATTTACTAGTTAATTGT+AGG + chr3_2:48412166-48412185 Msa0408510:intron 20.0%
!! ATTTAATACTAGATGTGTTA+TGG + chr3_2:48412201-48412220 Msa0408510:intron 20.0%
!! TTTAATACTAGATGTGTTAT+GGG + chr3_2:48412202-48412221 Msa0408510:intron 20.0%
!!! TTGTTTTTGTTGTGTAATTT+TGG + chr3_2:48412263-48412282 Msa0408510:intron 20.0%
!!! TGTTTTTGTTGTGTAATTTT+GGG + chr3_2:48412264-48412283 Msa0408510:intron 20.0%
!!! AACTAACTTTTAAAATCATC+GGG - chr3_2:48412630-48412649 None:intergenic 20.0%
!! TATCAAATCTAGACAATTAA+GGG - chr3_2:48412658-48412677 None:intergenic 20.0%
!! ATATCAAATCTAGACAATTA+AGG - chr3_2:48412659-48412678 None:intergenic 20.0%
!!! ATGTTTCTGAATTATATGAA+CGG + chr3_2:48412749-48412768 Msa0408510:intron 20.0%
!! AATTATATGAACGGTATATT+AGG + chr3_2:48412758-48412777 Msa0408510:intron 20.0%
!! ATTTGAGAATAAACAATATC+AGG - chr3_2:48412906-48412925 None:intergenic 20.0%
!! TCTGTTAAAAATCTATGTTA+GGG - chr3_2:48412945-48412964 None:intergenic 20.0%
!! ATCTGTTAAAAATCTATGTT+AGG - chr3_2:48412946-48412965 None:intergenic 20.0%
!!! TAACATAGATTTTTAACAGA+TGG + chr3_2:48412945-48412964 Msa0408510:intron 20.0%
!! ATGACAACTTTGTTAATTAT+AGG + chr3_2:48414197-48414216 Msa0408510:CDS 20.0%
!! TGACAACTTTGTTAATTATA+GGG + chr3_2:48414198-48414217 Msa0408510:CDS 20.0%
! ACATAGTAAAAAAGCAAAAG+AGG - chr3_2:48411364-48411383 None:intergenic 25.0%
!!! TGCTTTAAGAACTATATTGA+TGG - chr3_2:48411649-48411668 None:intergenic 25.0%
!! AAGCTAGCTTATCAAAAATT+CGG - chr3_2:48411733-48411752 None:intergenic 25.0%
!!! ATTTTTGATAAGCTAGCTTA+TGG + chr3_2:48411734-48411753 Msa0408510:intron 25.0%
!!! TTTTTTTCTCCTGATCATAT+AGG - chr3_2:48411872-48411891 None:intergenic 25.0%
!! TAGTCTCTAAAAAGTATACA+AGG + chr3_2:48412012-48412031 Msa0408510:intron 25.0%
! ATAACACGTGATGATATATT+CGG + chr3_2:48412118-48412137 Msa0408510:intron 25.0%
! TTTACTAGTTAATTGTAGGA+TGG + chr3_2:48412170-48412189 Msa0408510:intron 25.0%
! TTACTAGTTAATTGTAGGAT+GGG + chr3_2:48412171-48412190 Msa0408510:intron 25.0%
! ATCATCTTCTTGTATTTATC+TGG - chr3_2:48412335-48412354 None:intergenic 25.0%
!! CATTTTGCTTATAATAGTGA+CGG - chr3_2:48412566-48412585 None:intergenic 25.0%
!! TAAATTTACCGAAGTATCTT+TGG + chr3_2:48412690-48412709 Msa0408510:intron 25.0%
! CACTATTATAAGAGAAATCT+TGG - chr3_2:48412861-48412880 None:intergenic 25.0%
! GGAAAACAAGGTTATATAAA+CGG - chr3_2:48412885-48412904 None:intergenic 25.0%
! TAAACAATATCAGGAAAACA+AGG - chr3_2:48412897-48412916 None:intergenic 25.0%
!!! TTTTAAGAACTTCCTTAAGA+AGG - chr3_2:48413076-48413095 None:intergenic 25.0%
!! GAAATGCTTTAGACTTTATA+CGG + chr3_2:48413700-48413719 Msa0408510:CDS 25.0%
! AGATTAGATCTCAAAATTTC+AGG - chr3_2:48413764-48413783 None:intergenic 25.0%
!! AGTTCTTACTTTGAAGAAAT+TGG + chr3_2:48413793-48413812 Msa0408510:CDS 25.0%
!! GTTCTTACTTTGAAGAAATT+GGG + chr3_2:48413794-48413813 Msa0408510:CDS 25.0%
!!! TTTGGAAGTGTTAAATTACT+TGG + chr3_2:48413880-48413899 Msa0408510:CDS 25.0%
!!! TTGGAAGTGTTAAATTACTT+GGG + chr3_2:48413881-48413900 Msa0408510:CDS 25.0%
! TTCATTATAGATAACCCATT+CGG - chr3_2:48414461-48414480 None:intergenic 25.0%
AAAATTAACGGCGGTTTAAT+CGG + chr3_2:48411017-48411036 Msa0408510:CDS 30.0%
!!! GCAGAAAGATGATTTTTTGA+AGG + chr3_2:48411121-48411140 Msa0408510:CDS 30.0%
!!! AATCAGATTTTGATTCTCGT+TGG + chr3_2:48411155-48411174 Msa0408510:CDS 30.0%
TGTTTCAAAAGTGATTCTAG+AGG + chr3_2:48411413-48411432 Msa0408510:intron 30.0%
TCAAGATCTAAGTGTATGTT+TGG - chr3_2:48411613-48411632 None:intergenic 30.0%
ATACACTTAGATCTTGATTC+TGG + chr3_2:48411616-48411635 Msa0408510:intron 30.0%
!! TGACAACTGCATTTTAATCA+AGG + chr3_2:48411670-48411689 Msa0408510:intron 30.0%
!!! TTAGTCCTTATGGTTTTGTT+TGG + chr3_2:48411699-48411718 Msa0408510:intron 30.0%
! TTTTGCCAAACAAAACCATA+AGG - chr3_2:48411707-48411726 None:intergenic 30.0%
!! ACACTGATTTGCAAGTATAT+AGG - chr3_2:48411972-48411991 None:intergenic 30.0%
ATGAAACGACTATATGGTAA+TGG - chr3_2:48412100-48412119 None:intergenic 30.0%
ATGATATATTCGGCTGAAAT+TGG + chr3_2:48412128-48412147 Msa0408510:intron 30.0%
TACTAGTTAATTGTAGGATG+GGG + chr3_2:48412172-48412191 Msa0408510:intron 30.0%
CAATATCACCAAAGATACTT+CGG - chr3_2:48412701-48412720 None:intergenic 30.0%
!!! CTATTTTTTGAGAGGAATCT+TGG - chr3_2:48412835-48412854 None:intergenic 30.0%
CAAAGTGATTATTCTTGATG+AGG + chr3_2:48413013-48413032 Msa0408510:CDS 30.0%
ATAACAACCAACTTCAAATC+AGG - chr3_2:48413104-48413123 None:intergenic 30.0%
!! GACATACTTGTTTTTCTTAC+TGG + chr3_2:48413299-48413318 Msa0408510:CDS 30.0%
ATCAGAAGTAGTTGCAAATT+TGG + chr3_2:48413367-48413386 Msa0408510:CDS 30.0%
TCAGAAGTAGTTGCAAATTT+GGG + chr3_2:48413368-48413387 Msa0408510:CDS 30.0%
AGATCTCAAAATTTCAGGAT+AGG - chr3_2:48413759-48413778 None:intergenic 30.0%
!!! TTTAGTGCATTTTGACTTCA+TGG + chr3_2:48413826-48413845 Msa0408510:CDS 30.0%
TGAAGGTAACTTAACAAAGT+TGG + chr3_2:48413916-48413935 Msa0408510:CDS 30.0%
GAAGGTAACTTAACAAAGTT+GGG + chr3_2:48413917-48413936 Msa0408510:CDS 30.0%
TTCTTATATTGACGTAGTAG+TGG - chr3_2:48414315-48414334 None:intergenic 30.0%
CTACTACGTCAATATAAGAA+AGG + chr3_2:48414315-48414334 Msa0408510:CDS 30.0%
TCATTATAGATAACCCATTC+GGG - chr3_2:48414460-48414479 None:intergenic 30.0%
ATGAATATGTTCTTACGAGT+CGG + chr3_2:48414476-48414495 Msa0408510:CDS 30.0%
GCTAAGACGGTGAAAATTAA+CGG + chr3_2:48411005-48411024 Msa0408510:CDS 35.0%
!! TACAAGGTACTTCGAGATTT+TGG + chr3_2:48411070-48411089 Msa0408510:CDS 35.0%
CAGAATCTGATTACTAACCT+GGG - chr3_2:48411204-48411223 None:intergenic 35.0%
ACAGAATCTGATTACTAACC+TGG - chr3_2:48411205-48411224 None:intergenic 35.0%
TACAAATTGTAGCTTCAAGC+AGG - chr3_2:48411506-48411525 None:intergenic 35.0%
! TTTGATAAGCTAGCTTATGG+CGG + chr3_2:48411737-48411756 Msa0408510:intron 35.0%
! TAAGCTATCAGCTAGCTTAT+AGG - chr3_2:48411768-48411787 None:intergenic 35.0%
GTGAGGAAAAAAGACTCATT+TGG - chr3_2:48411900-48411919 None:intergenic 35.0%
ATAGCTTATATGCACATGTG+AGG - chr3_2:48411917-48411936 None:intergenic 35.0%
TAATGGCTGCATCTTAATCA+AGG - chr3_2:48412083-48412102 None:intergenic 35.0%
CGTGTTATGAAACGACTATA+TGG - chr3_2:48412106-48412125 None:intergenic 35.0%
! TTGCTTATAATAGTGACGGA+TGG - chr3_2:48412562-48412581 None:intergenic 35.0%
! CGAAGTATCTTTGGTGATAT+TGG + chr3_2:48412699-48412718 Msa0408510:intron 35.0%
!!! CTTGGTCACTATTTTTTGAG+AGG - chr3_2:48412843-48412862 None:intergenic 35.0%
ACTTTGTATCGTTCCAAAAG+TGG - chr3_2:48412999-48413018 None:intergenic 35.0%
! TTGGCTACAGATGTGTTATT+TGG + chr3_2:48413050-48413069 Msa0408510:CDS 35.0%
!! TGTGTTATTTGGCCTTCTTA+AGG + chr3_2:48413061-48413080 Msa0408510:CDS 35.0%
! AAACAGACCTGATTTGAAGT+TGG + chr3_2:48413094-48413113 Msa0408510:CDS 35.0%
TACCTGGAACTTTCATAAGA+CGG - chr3_2:48413175-48413194 None:intergenic 35.0%
TCAGCATAGAAAATTTCCAC+TGG - chr3_2:48413206-48413225 None:intergenic 35.0%
AGAACCACAAACAGATTACT+TGG + chr3_2:48413226-48413245 Msa0408510:CDS 35.0%
!! ACTTGTTTTTCTTACTGGAG+AGG + chr3_2:48413304-48413323 Msa0408510:CDS 35.0%
CAGAAGTAGTTGCAAATTTG+GGG + chr3_2:48413369-48413388 Msa0408510:CDS 35.0%
AGAAGTAGTTGCAAATTTGG+GGG + chr3_2:48413370-48413389 Msa0408510:CDS 35.0%
ACAATGGTACAACTTTCACA+GGG - chr3_2:48413406-48413425 None:intergenic 35.0%
TACAATGGTACAACTTTCAC+AGG - chr3_2:48413407-48413426 None:intergenic 35.0%
GAAACTTCATTGACAATCGA+TGG + chr3_2:48413536-48413555 Msa0408510:CDS 35.0%
AGTTCGTGTTGAGTCTTTAT+TGG + chr3_2:48413613-48413632 Msa0408510:CDS 35.0%
! ATTGGTGTCTCCAATATCAA+AGG + chr3_2:48413631-48413650 Msa0408510:CDS 35.0%
! TAAAGTCTAAAGCATTTCCC+TGG - chr3_2:48413698-48413717 None:intergenic 35.0%
AAAATTTCAGGATAGGTCTG+CGG - chr3_2:48413752-48413771 None:intergenic 35.0%
CTTCAAAGTAAGAACTGTGT+TGG - chr3_2:48413789-48413808 None:intergenic 35.0%
GTTAAATTACTTGGGTGCAA+TGG + chr3_2:48413889-48413908 Msa0408510:CDS 35.0%
!! ATCCTCATTGTTTTGCTTGT+AGG - chr3_2:48414164-48414183 None:intergenic 35.0%
AAAACAATGAGGATGCTTCT+TGG + chr3_2:48414170-48414189 Msa0408510:CDS 35.0%
TAGCTGTTGTCGAACATTAT+CGG - chr3_2:48414236-48414255 None:intergenic 35.0%
AAGACGGTGAAAATTAACGG+CGG + chr3_2:48411008-48411027 Msa0408510:CDS 40.0%
ACGGAAAACCTTACTCTACA+AGG + chr3_2:48411054-48411073 Msa0408510:CDS 40.0%
! TCGAAGTACCTTGTAGAGTA+AGG - chr3_2:48411065-48411084 None:intergenic 40.0%
!! ACTTCGAGATTTTGGAGAAG+AGG + chr3_2:48411078-48411097 Msa0408510:CDS 40.0%
ATCATCTTTCTGCTGCCAAA+CGG - chr3_2:48411114-48411133 None:intergenic 40.0%
ACCAACGTCATACTTTGCAT+AGG + chr3_2:48411311-48411330 Msa0408510:intron 40.0%
CCAACGTCATACTTTGCATA+GGG + chr3_2:48411312-48411331 Msa0408510:intron 40.0%
AAAGCAAAAGAGGACTCGTA+GGG - chr3_2:48411354-48411373 None:intergenic 40.0%
AAAAGCAAAAGAGGACTCGT+AGG - chr3_2:48411355-48411374 None:intergenic 40.0%
! AAGGCACTCATTAGTCCTTA+TGG + chr3_2:48411689-48411708 Msa0408510:intron 40.0%
AGCTAGCTGATAGCTTATAC+CGG + chr3_2:48411771-48411790 Msa0408510:intron 40.0%
TGTCATTCCTCGAACTTATC+CGG - chr3_2:48411793-48411812 None:intergenic 40.0%
TTCGAGGAATGACAAGCTAT+AGG + chr3_2:48411799-48411818 Msa0408510:intron 40.0%
GCAAGTATATAGGCTCTGTT+TGG - chr3_2:48411962-48411981 None:intergenic 40.0%
TTAATTGTAGGATGGGGACT+TGG + chr3_2:48412178-48412197 Msa0408510:intron 40.0%
GATGTGTTATGGGATAAGAC+TGG + chr3_2:48412212-48412231 Msa0408510:intron 40.0%
! GACTGGTTATGTAAGTGTGT+AGG + chr3_2:48412229-48412248 Msa0408510:intron 40.0%
!! CAGCTTCTAAAACGAACTGA+GGG - chr3_2:48412298-48412317 None:intergenic 40.0%
!! ACAGCTTCTAAAACGAACTG+AGG - chr3_2:48412299-48412318 None:intergenic 40.0%
GAAGAGATGGATGTGAGTAT+TGG + chr3_2:48412413-48412432 Msa0408510:CDS 40.0%
!! GCTTTTGAGAGAAGCAATGA+CGG + chr3_2:48412971-48412990 Msa0408510:CDS 40.0%
TTCTTGATGAGGCACATGAA+AGG + chr3_2:48413024-48413043 Msa0408510:CDS 40.0%
ACCTGGAACTTTCATAAGAC+GGG - chr3_2:48413174-48413193 None:intergenic 40.0%
GTCTTATGAAAGTTCCAGGT+AGG + chr3_2:48413174-48413193 Msa0408510:CDS 40.0%
ACCACAAACAGATTACTTGG+AGG + chr3_2:48413229-48413248 Msa0408510:CDS 40.0%
ATTACTTGGAGGCTGCTATT+GGG + chr3_2:48413240-48413259 Msa0408510:CDS 40.0%
AAAACAAGTATGTCTCCAGC+AGG - chr3_2:48413293-48413312 None:intergenic 40.0%
ATTGTATTCTACTCTTCCCC+CGG + chr3_2:48413421-48413440 Msa0408510:CDS 40.0%
AAAATCTTCTGCTGCATAGC+CGG - chr3_2:48413443-48413462 None:intergenic 40.0%
ATAGTCTATGTTGTTGACCC+TGG + chr3_2:48413560-48413579 Msa0408510:CDS 40.0%
GATTATGAGTGAGTTTCCGT+TGG + chr3_2:48413943-48413962 Msa0408510:CDS 40.0%
CAAGCATCTTTGACATCTGA+GGG - chr3_2:48413970-48413989 None:intergenic 40.0%
ACAAGCATCTTTGACATCTG+AGG - chr3_2:48413971-48413990 None:intergenic 40.0%
TCGTTTGAACAGTTGAACTC+AGG - chr3_2:48414001-48414020 None:intergenic 40.0%
!! CATTGTTTTGCTTGTAGGCA+TGG - chr3_2:48414159-48414178 None:intergenic 40.0%
TGCCTACAAGCAAAACAATG+AGG + chr3_2:48414159-48414178 Msa0408510:CDS 40.0%
ATAAGAAAGGCAATGCTAGC+CGG + chr3_2:48414328-48414347 Msa0408510:CDS 40.0%
CTTGACAGTTAAAGACAAGC+AGG + chr3_2:48414396-48414415 Msa0408510:CDS 40.0%
TTGTGGTCTAGGCAATTTGA+TGG - chr3_2:48414436-48414455 None:intergenic 40.0%
TGACAGATATACGTGGTGAA+TGG + chr3_2:48414515-48414534 Msa0408510:CDS 40.0%
CAACGACTCTATGGCTAAGA+CGG + chr3_2:48410992-48411011 Msa0408510:CDS 45.0%
! AGTAAGGTTTTCCGTTCCAG+CGG - chr3_2:48411049-48411068 None:intergenic 45.0%
TCATCTTTCTGCTGCCAAAC+GGG - chr3_2:48411113-48411132 None:intergenic 45.0%
! TTGATTCTCGTTGGTGAGAC+CGG + chr3_2:48411164-48411183 Msa0408510:CDS 45.0%
CCCTATGCAAAGTATGACGT+TGG - chr3_2:48411315-48411334 None:intergenic 45.0%
GCTTATACCGGATAAGTTCG+AGG + chr3_2:48411783-48411802 Msa0408510:intron 45.0%
!! GGATGTGAGTATTGGTGAAG+AGG + chr3_2:48412421-48412440 Msa0408510:CDS 45.0%
!! GTGAGTATTGGTGAAGAGGT+TGG + chr3_2:48412425-48412444 Msa0408510:CDS 45.0%
!!! AGCAATGACGGATCCACTTT+TGG + chr3_2:48412983-48413002 Msa0408510:CDS 45.0%
TGAGGCACATGAAAGGACTT+TGG + chr3_2:48413031-48413050 Msa0408510:CDS 45.0%
GCCTCCAAGTAATCTGTTTG+TGG - chr3_2:48413233-48413252 None:intergenic 45.0%
GATTACTTGGAGGCTGCTAT+TGG + chr3_2:48413239-48413258 Msa0408510:CDS 45.0%
AGTTGCAAATTTGGGGGACA+AGG + chr3_2:48413376-48413395 Msa0408510:CDS 45.0%
GGGGGAAGAGTAGAATACAA+TGG - chr3_2:48413422-48413441 None:intergenic 45.0%
AAATCTTCTGCTGCATAGCC+GGG - chr3_2:48413442-48413461 None:intergenic 45.0%
GATACCACAATCTTCCTTCC+AGG - chr3_2:48413503-48413522 None:intergenic 45.0%
CTATGTTGTTGACCCTGGAT+TGG + chr3_2:48413565-48413584 Msa0408510:CDS 45.0%
AAGACTCAACACGAACTCGA+GGG - chr3_2:48413610-48413629 None:intergenic 45.0%
AAAGACTCAACACGAACTCG+AGG - chr3_2:48413611-48413630 None:intergenic 45.0%
!! TGCGCACTAGCCTTTGATAT+TGG - chr3_2:48413644-48413663 None:intergenic 45.0%
TTGGGTGCAATGGATGATGA+AGG + chr3_2:48413899-48413918 Msa0408510:CDS 45.0%
TTTGACATCTGAGGGTCCAA+CGG - chr3_2:48413962-48413981 None:intergenic 45.0%
CAGTACCCAACTGCTTTATC+CGG + chr3_2:48414047-48414066 Msa0408510:CDS 45.0%
TTAGGCCGGATAAAGCAGTT+GGG - chr3_2:48414055-48414074 None:intergenic 45.0%
! TAAGGAGGCACAAATAGCTG+CGG + chr3_2:48414072-48414091 Msa0408510:CDS 45.0%
ACAACAGCTAGTGCGTATCA+TGG + chr3_2:48414246-48414265 Msa0408510:CDS 45.0%
AGCCACCTGCATGAAATATC+CGG - chr3_2:48414350-48414369 None:intergenic 45.0%
CGTACTGTGACAGATATACG+TGG + chr3_2:48414508-48414527 Msa0408510:CDS 45.0%
CGTAGTCGACAACGACTCTA+TGG + chr3_2:48410983-48411002 Msa0408510:CDS 50.0%
AGAGGAAAACCCTTCCCGTT+TGG + chr3_2:48411096-48411115 Msa0408510:CDS 50.0%
TTTCTGCTGCCAAACGGGAA+GGG - chr3_2:48411108-48411127 None:intergenic 50.0%
!! CTGGGTTGTTTTGCCACTAC+CGG - chr3_2:48411186-48411205 None:intergenic 50.0%
GTAACACACGCATGCATGCA+TGG - chr3_2:48411270-48411289 None:intergenic 50.0%
TTTGCATAGGGAACTCACCG+CGG + chr3_2:48411324-48411343 Msa0408510:intron 50.0%
GCCCGTCTTATGAAAGTTCC+AGG + chr3_2:48413170-48413189 Msa0408510:CDS 50.0%
TCCAGGTAGGTTACATCCAG+TGG + chr3_2:48413187-48413206 Msa0408510:CDS 50.0%
TCCACTGGATGTAACCTACC+TGG - chr3_2:48413191-48413210 None:intergenic 50.0%
ATTCACACGCTTGAACCTGC+TGG + chr3_2:48413275-48413294 Msa0408510:CDS 50.0%
TGCAAATTTGGGGGACAAGG+TGG + chr3_2:48413379-48413398 Msa0408510:CDS 50.0%
GCAAATTTGGGGGACAAGGT+GGG + chr3_2:48413380-48413399 Msa0408510:CDS 50.0%
AATCTTCTGCTGCATAGCCG+GGG - chr3_2:48413441-48413460 None:intergenic 50.0%
CTTTAACTGGAGGAGGAGCT+GGG - chr3_2:48413469-48413488 None:intergenic 50.0%
TCTTTAACTGGAGGAGGAGC+TGG - chr3_2:48413470-48413489 None:intergenic 50.0%
AGCTCCTCCTCCAGTTAAAG+AGG + chr3_2:48413469-48413488 Msa0408510:CDS 50.0%
GCTCCTCCTCCAGTTAAAGA+GGG + chr3_2:48413470-48413489 Msa0408510:CDS 50.0%
CCACAATCTTCCTTCCAGGA+GGG - chr3_2:48413499-48413518 None:intergenic 50.0%
ACCACAATCTTCCTTCCAGG+AGG - chr3_2:48413500-48413519 None:intergenic 50.0%
CCTTCTGCTTTGCCAATCCA+GGG - chr3_2:48413580-48413599 None:intergenic 50.0%
ACCTTCTGCTTTGCCAATCC+AGG - chr3_2:48413581-48413600 None:intergenic 50.0%
CTAGTGCGCATCAGAGATCT+GGG + chr3_2:48413654-48413673 Msa0408510:CDS 50.0%
GTGCTGGAAGAACACAACCA+GGG + chr3_2:48413678-48413697 Msa0408510:CDS 50.0%
ATTAAGGTCTCAGGTGCAGG+AGG - chr3_2:48413854-48413873 None:intergenic 50.0%
AAAGCGCGCATTAAGGTCTC+AGG - chr3_2:48413863-48413882 None:intergenic 50.0%
TGAGACCTTAATGCGCGCTT+TGG + chr3_2:48413862-48413881 Msa0408510:CDS 50.0%
CACTTCCAAAGCGCGCATTA+AGG - chr3_2:48413870-48413889 None:intergenic 50.0%
CTTAGGCCGGATAAAGCAGT+TGG - chr3_2:48414056-48414075 None:intergenic 50.0%
CAACTGCTTTATCCGGCCTA+AGG + chr3_2:48414054-48414073 Msa0408510:CDS 50.0%
CTATTTGTGCCTCCTTAGGC+CGG - chr3_2:48414069-48414088 None:intergenic 50.0%
GCAGCTATTTGTGCCTCCTT+AGG - chr3_2:48414073-48414092 None:intergenic 50.0%
GCTAGGTTTGCACACATCGA+TGG + chr3_2:48414106-48414125 Msa0408510:CDS 50.0%
AGCTAGTGCGTATCATGGCT+CGG + chr3_2:48414251-48414270 Msa0408510:CDS 50.0%
GCTAGCCGGATATTTCATGC+AGG + chr3_2:48414342-48414361 Msa0408510:CDS 50.0%
AGCCGGATATTTCATGCAGG+TGG + chr3_2:48414345-48414364 Msa0408510:CDS 50.0%
GCTCATCTTGATCAGCAGAG+AGG + chr3_2:48414367-48414386 Msa0408510:CDS 50.0%
AGATAACCCATTCGGGCTTG+TGG - chr3_2:48414453-48414472 None:intergenic 50.0%
GGGTACGGCAAGGAAGAGAA+AGG + chr3_2:48410947-48410966 Msa0408510:CDS 55.0%
GTTTAATCGGCCACAACCGC+TGG + chr3_2:48411030-48411049 Msa0408510:CDS 55.0%
! GTTTTCCGTTCCAGCGGTTG+TGG - chr3_2:48411043-48411062 None:intergenic 55.0%
CTTTCTGCTGCCAAACGGGA+AGG - chr3_2:48411109-48411128 None:intergenic 55.0%
! CGGTAGTGGCAAAACAACCC+AGG + chr3_2:48411184-48411203 Msa0408510:CDS 55.0%
ATGCACTCAGCCACGTAGAG+TGG + chr3_2:48412361-48412380 Msa0408510:CDS 55.0%
GACATTGCAGCCACTCTACG+TGG - chr3_2:48412374-48412393 None:intergenic 55.0%
CATCCATCTCTTCAGCCACG+CGG - chr3_2:48412406-48412425 None:intergenic 55.0%
ATCTTCTGCTGCATAGCCGG+GGG - chr3_2:48413440-48413459 None:intergenic 55.0%
CCTCCCTCTTTAACTGGAGG+AGG - chr3_2:48413476-48413495 None:intergenic 55.0%
CCTCCTCCAGTTAAAGAGGG+AGG + chr3_2:48413473-48413492 Msa0408510:CDS 55.0%
CCCTCCTGGAAGGAAGATTG+TGG + chr3_2:48413496-48413515 Msa0408510:CDS 55.0%
!! CCCTGGATTGGCAAAGCAGA+AGG + chr3_2:48413577-48413596 Msa0408510:CDS 55.0%
GCTAGTGCGCATCAGAGATC+TGG + chr3_2:48413653-48413672 Msa0408510:CDS 55.0%
CGTGCTGGAAGAACACAACC+AGG + chr3_2:48413677-48413696 Msa0408510:CDS 55.0%
CGCATTAAGGTCTCAGGTGC+AGG - chr3_2:48413857-48413876 None:intergenic 55.0%
CTGCTTTATCCGGCCTAAGG+AGG + chr3_2:48414057-48414076 Msa0408510:CDS 55.0%
CTGCGGATGAAGCGAAAGCT+AGG + chr3_2:48414089-48414108 Msa0408510:CDS 55.0%
CCTAGACCACAAGCCCGAAT+GGG + chr3_2:48414444-48414463 Msa0408510:CDS 55.0%
ATCGGCCACAACCGCTGGAA+CGG + chr3_2:48411035-48411054 Msa0408510:CDS 60.0%
! CTCGTTGGTGAGACCGGTAG+TGG + chr3_2:48411170-48411189 Msa0408510:CDS 60.0%
CATAGGGAACTCACCGCGGA+CGG + chr3_2:48411328-48411347 Msa0408510:intron 60.0%
AATGTCTGTTTCCCGCCGCG+TGG + chr3_2:48412388-48412407 Msa0408510:CDS 60.0%
GGAGGCTGCTATTGGGACAG+TGG + chr3_2:48413247-48413266 Msa0408510:CDS 60.0%
GGGCCTCCCTCTTTAACTGG+AGG - chr3_2:48413479-48413498 None:intergenic 60.0%
GGAGGGCCTCCCTCTTTAAC+TGG - chr3_2:48413482-48413501 None:intergenic 60.0%
GTTAAAGAGGGAGGCCCTCC+TGG + chr3_2:48413482-48413501 Msa0408510:CDS 60.0%
CATCAGAGATCTGGGCGTGC+TGG + chr3_2:48413662-48413681 Msa0408510:CDS 60.0%
GCCTAGACCACAAGCCCGAA+TGG + chr3_2:48414443-48414462 Msa0408510:CDS 60.0%
CCCATTCGGGCTTGTGGTCT+AGG - chr3_2:48414447-48414466 None:intergenic 60.0%
CATCTCTTCAGCCACGCGGC+GGG - chr3_2:48412402-48412421 None:intergenic 65.0%
CCATCTCTTCAGCCACGCGG+CGG - chr3_2:48412403-48412422 None:intergenic 65.0%
AAGAGGGAGGCCCTCCTGGA+AGG + chr3_2:48413486-48413505 Msa0408510:CDS 65.0%
AGGACTCGTAGGGCCGTCCG+CGG - chr3_2:48411344-48411363 None:intergenic 70.0%
CCGCCGCGTGGCTGAAGAGA+TGG + chr3_2:48412400-48412419 Msa0408510:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 48410945 48414573 48410945 ID=Msa0408510;Name=Msa0408510
chr3_2 mRNA 48410945 48414573 48410945 ID=Msa0408510-mRNA-1;Parent=Msa0408510;Name=Msa0408510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|694
chr3_2 exon 48410945 48411205 48410945 ID=Msa0408510-mRNA-1:exon:9382;Parent=Msa0408510-mRNA-1
chr3_2 exon 48412293 48412495 48412293 ID=Msa0408510-mRNA-1:exon:9383;Parent=Msa0408510-mRNA-1
chr3_2 exon 48412953 48414573 48412953 ID=Msa0408510-mRNA-1:exon:9384;Parent=Msa0408510-mRNA-1
chr3_2 CDS 48410945 48411205 48410945 ID=Msa0408510-mRNA-1:cds;Parent=Msa0408510-mRNA-1
chr3_2 CDS 48412293 48412495 48412293 ID=Msa0408510-mRNA-1:cds;Parent=Msa0408510-mRNA-1
chr3_2 CDS 48412953 48414573 48412953 ID=Msa0408510-mRNA-1:cds;Parent=Msa0408510-mRNA-1
Gene Sequence

>Msa0408510

ATGGGTACGGCAAGGAAGAGAAAGGTGAGTTTATTCGACGTAGTCGACAACGACTCTATGGCTAAGACGGTGAAAATTAACGGCGGTTTAATCGGCCACAACCGCTGGAACGGAAAACCTTACTCTACAAGGTACTTCGAGATTTTGGAGAAGAGGAAAACCCTTCCCGTTTGGCAGCAGAAAGATGATTTTTTGAAGGTTTTTAAGGATAATCAGATTTTGATTCTCGTTGGTGAGACCGGTAGTGGCAAAACAACCCAGATCCCTCAGTTCGTTTTAGAAGCTGTTGATTTAGAGACTCCAGATAAATACAAGAAGATGATGATTGCATGCACTCAGCCACGTAGAGTGGCTGCAATGTCTGTTTCCCGCCGCGTGGCTGAAGAGATGGATGTGAGTATTGGTGAAGAGGTTGGTTATAGCATCAGATTTGAAGATTGTAGCAGTGAAAGAACAGTTTTGAAATTTTTAACAGATGGTATGCTTTTGAGAGAAGCAATGACGGATCCACTTTTGGAACGATACAAAGTGATTATTCTTGATGAGGCACATGAAAGGACTTTGGCTACAGATGTGTTATTTGGCCTTCTTAAGGAAGTTCTTAAAAACAGACCTGATTTGAAGTTGGTTGTTATGAGTGCAACACTTGAAGCCGAAAAGTTTAAGAGTTATTTTTTTGGAGCCCGTCTTATGAAAGTTCCAGGTAGGTTACATCCAGTGGAAATTTTCTATGCTGAAGAACCACAAACAGATTACTTGGAGGCTGCTATTGGGACAGTGGTGCAGATTCACACGCTTGAACCTGCTGGAGACATACTTGTTTTTCTTACTGGAGAGGAAGAGATAGAAAATGCATGCAGCAAAATATCAAACGAAATATCAGAAGTAGTTGCAAATTTGGGGGACAAGGTGGGCCCTGTGAAAGTTGTACCATTGTATTCTACTCTTCCCCCGGCTATGCAGCAGAAGATTTTTGACCCAGCTCCTCCTCCAGTTAAAGAGGGAGGCCCTCCTGGAAGGAAGATTGTGGTATCAACAAACATAGCAGAAACTTCATTGACAATCGATGGTATAGTCTATGTTGTTGACCCTGGATTGGCAAAGCAGAAGGTTTATAACCCTCGAGTTCGTGTTGAGTCTTTATTGGTGTCTCCAATATCAAAGGCTAGTGCGCATCAGAGATCTGGGCGTGCTGGAAGAACACAACCAGGGAAATGCTTTAGACTTTATACGGAAATGAGTTTCAATAATGATCTTCAGCCGCAGACCTATCCTGAAATTTTGAGATCTAATCTCTCCAACACAGTTCTTACTTTGAAGAAATTGGGCATAGACGATTTAGTGCATTTTGACTTCATGGATCCTCCTGCACCTGAGACCTTAATGCGCGCTTTGGAAGTGTTAAATTACTTGGGTGCAATGGATGATGAAGGTAACTTAACAAAGTTGGGTGAGATTATGAGTGAGTTTCCGTTGGACCCTCAGATGTCAAAGATGCTTGTTGTTAGTCCTGAGTTCAACTGTTCAAACGAGATTCTTTCAATTTGTGCGATGCTAGCAGTACCCAACTGCTTTATCCGGCCTAAGGAGGCACAAATAGCTGCGGATGAAGCGAAAGCTAGGTTTGCACACATCGATGGAGATCATCTCACACTCTTGAATGTATACCATGCCTACAAGCAAAACAATGAGGATGCTTCTTGGTGCTATGACAACTTTGTTAATTATAGGGTGTTGAAATCAGCCGATAATGTTCGACAACAGCTAGTGCGTATCATGGCTCGGTTTAATCTGAAGTTATGCAGCACTCACTTCAATAGTCGCCACTACTACGTCAATATAAGAAAGGCAATGCTAGCCGGATATTTCATGCAGGTGGCTCATCTTGATCAGCAGAGAGGACACTACTTGACAGTTAAAGACAAGCAGGAAGTATACTTGCATCCATCAAATTGCCTAGACCACAAGCCCGAATGGGTTATCTATAATGAATATGTTCTTACGAGTCGGAATTTCATACGTACTGTGACAGATATACGTGGTGAATGGTTAGTTGATATAGCACCACATTACCATGATCTGTAG
Protein sequence

>Msa0408510

MGTARKRKVSLFDVVDNDSMAKTVKINGGLIGHNRWNGKPYSTRYFEILEKRKTLPVWQQKDDFLKVFKDNQILILVGETGSGKTTQIPQFVLEAVDLETPDKYKKMMIACTQPRRVAAMSVSRRVAEEMDVSIGEEVGYSIRFEDCSSERTVLKFLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFKSYFFGARLMKVPGRLHPVEIFYAEEPQTDYLEAAIGTVVQIHTLEPAGDILVFLTGEEEIENACSKISNEISEVVANLGDKVGPVKVVPLYSTLPPAMQQKIFDPAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVVDPGLAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEMSFNNDLQPQTYPEILRSNLSNTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAMDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSICAMLAVPNCFIRPKEAQIAADEAKARFAHIDGDHLTLLNVYHAYKQNNEDASWCYDNFVNYRVLKSADNVRQQLVRIMARFNLKLCSTHFNSRHYYVNIRKAMLAGYFMQVAHLDQQRGHYLTVKDKQEVYLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYHDL*