AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0501560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501560 MtrunA17_Chr3g0099251 88.472 720 53 2 1 694 1 716 0.0 1311
Msa0501560 MtrunA17_Chr1g0194381 90.374 696 59 3 2 694 1 691 0.0 1304
Msa0501560 MtrunA17_Chr4g0044491 82.640 697 79 5 2 694 1 659 0.0 1155
Msa0501560 MtrunA17_Chr1g0211961 53.188 643 278 7 50 691 530 1150 0.0 711
Msa0501560 MtrunA17_Chr1g0156271 52.550 647 284 6 46 691 561 1185 0.0 710
Msa0501560 MtrunA17_Chr3g0086391 51.846 650 284 10 50 694 407 1032 0.0 674
Msa0501560 MtrunA17_Chr2g0283271 46.200 671 315 11 48 694 46 694 0.0 589
Msa0501560 MtrunA17_Chr3g0100131 43.606 649 341 8 48 691 585 1213 0.0 582
Msa0501560 MtrunA17_Chr2g0329131 43.385 650 341 8 48 691 564 1192 0.0 579
Msa0501560 MtrunA17_Chr7g0259941 40.954 713 337 12 42 694 35 723 2.37e-180 531
Msa0501560 MtrunA17_Chr8g0359501 40.813 713 338 12 42 694 35 723 8.20e-179 527
Msa0501560 MtrunA17_Chr8g0377111 40.520 654 347 12 54 687 3 634 3.16e-168 499
Msa0501560 MtrunA17_Chr5g0432591 56.595 417 163 5 45 459 199 599 1.19e-159 474
Msa0501560 MtrunA17_Chr6g0476001 57.022 356 137 4 48 403 247 586 8.45e-135 409
Msa0501560 MtrunA17_Chr1g0177141 34.795 707 364 20 52 679 265 953 1.57e-100 331
Msa0501560 MtrunA17_Chr1g0164621 32.258 651 376 16 72 689 4 622 1.95e-90 308
Msa0501560 MtrunA17_Chr3g0082091 32.203 649 377 15 72 689 4 620 2.17e-90 308
Msa0501560 MtrunA17_Chr3g0123681 31.050 686 415 15 32 689 244 899 3.56e-89 305
Msa0501560 MtrunA17_Chr3g0100151 47.431 253 127 2 326 578 27 273 8.29e-72 234
Msa0501560 MtrunA17_Chr3g0100171 42.000 250 143 1 372 621 49 296 5.38e-62 213
Msa0501560 MtrunA17_Chr8g0354481 50.481 208 92 3 161 368 1 197 1.53e-61 204
Msa0501560 MtrunA17_Chr8g0359451 43.983 241 88 2 71 269 30 265 3.75e-58 198
Msa0501560 MtrunA17_Chr1g0208961 31.294 425 260 12 270 679 608 1015 1.93e-54 202
Msa0501560 MtrunA17_Chr1g0208961 46.602 206 106 2 42 246 316 518 2.11e-46 178
Msa0501560 MtrunA17_Chr4g0010901 39.209 278 142 4 47 297 264 541 1.55e-52 196
Msa0501560 MtrunA17_Chr4g0010901 27.254 477 244 11 305 688 690 1156 1.38e-38 154
Msa0501560 MtrunA17_Chr8g0392581 30.275 436 269 12 267 685 551 968 2.75e-51 192
Msa0501560 MtrunA17_Chr8g0392581 45.631 206 110 2 42 247 260 463 5.04e-47 179
Msa0501560 MtrunA17_Chr8g0355291 31.306 444 272 12 258 685 517 943 8.52e-51 191
Msa0501560 MtrunA17_Chr8g0355291 40.086 232 137 2 16 247 210 439 6.55e-40 158
Msa0501560 MtrunA17_Chr5g0432601 42.381 210 113 5 487 693 1 205 8.70e-49 171
Msa0501560 MtrunA17_Chr0c12g0493631 29.707 478 251 14 270 679 151 611 2.00e-46 175
Msa0501560 MtrunA17_Chr6g0475991 36.885 244 116 5 453 693 1 209 7.25e-46 163
Msa0501560 MtrunA17_Chr1g0195601 30.635 457 262 14 55 475 30 467 2.78e-45 174
Msa0501560 MtrunA17_Chr5g0442401 32.578 353 211 8 260 600 544 881 5.26e-42 164
Msa0501560 MtrunA17_Chr5g0442401 35.749 207 118 3 52 247 184 386 9.66e-35 142
Msa0501560 MtrunA17_Chr4g0067511 27.907 473 245 10 305 688 339 804 1.18e-38 154
Msa0501560 MtrunA17_Chr4g0067511 36.875 160 66 4 169 297 35 190 1.31e-20 97.1
Msa0501560 MtrunA17_Chr4g0077061 39.070 215 120 3 42 247 592 804 2.70e-36 147
Msa0501560 MtrunA17_Chr4g0077061 37.156 218 116 3 339 554 953 1151 1.50e-33 138
Msa0501560 MtrunA17_Chr8g0354491 44.681 141 76 2 465 603 1 141 2.95e-36 133
Msa0501560 MtrunA17_Chr8g0354471 60.550 109 37 3 46 153 100 203 9.34e-36 134
Msa0501560 MtrunA17_Chr8g0355531 34.722 144 91 2 385 526 3 145 2.75e-24 100
Msa0501560 MtrunA17_Chr4g0067501 46.429 56 30 0 109 164 32 87 6.55e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501560 AT3G62310.1 83.476 702 100 5 2 694 1 695 0.0 1218
Msa0501560 AT2G47250.1 82.720 706 102 5 2 694 1 699 0.0 1208
Msa0501560 AT3G62310.3 82.987 529 75 4 2 521 1 523 0.0 892
Msa0501560 AT3G62310.2 82.430 535 78 5 2 526 1 529 0.0 890
Msa0501560 AT3G26560.1 53.014 647 281 7 46 691 506 1130 0.0 705
Msa0501560 AT1G32490.2 51.767 651 289 10 47 694 386 1014 0.0 691
Msa0501560 AT1G32490.1 51.767 651 289 10 47 694 396 1024 0.0 690
Msa0501560 AT2G35340.1 51.618 649 287 10 50 694 399 1024 0.0 679
Msa0501560 AT2G35340.2 51.618 649 287 10 50 694 261 886 0.0 678
Msa0501560 AT4G16680.2 49.492 689 308 12 15 694 97 754 0.0 658
Msa0501560 AT5G13010.1 43.914 649 339 8 48 691 551 1179 0.0 588
Msa0501560 AT4G18465.1 45.522 670 324 10 45 693 38 687 0.0 587
Msa0501560 AT1G26370.1 41.047 726 339 15 30 691 12 712 2.45e-173 513
Msa0501560 AT1G27900.1 40.123 653 354 11 55 687 4 639 8.19e-167 496
Msa0501560 AT4G16680.1 53.731 469 192 6 15 482 177 621 8.03e-164 486
Msa0501560 AT1G27900.3 42.210 552 293 8 55 597 4 538 4.29e-156 462
Msa0501560 AT1G27900.2 42.086 556 296 8 55 601 4 542 4.90e-156 463
Msa0501560 AT5G14900.1 73.881 268 66 3 430 694 2 268 3.98e-144 422
Msa0501560 AT2G35920.2 34.424 703 372 19 52 679 167 855 4.24e-107 347
Msa0501560 AT2G35920.1 34.610 705 368 20 52 679 225 913 1.37e-106 347
Msa0501560 AT2G35920.3 34.610 705 368 20 52 679 257 945 2.76e-106 347
Msa0501560 AT1G48650.2 34.072 722 371 19 42 679 286 986 4.64e-103 341
Msa0501560 AT1G48650.1 34.072 722 371 19 42 679 286 986 6.26e-103 341
Msa0501560 AT5G10370.1 31.744 671 391 17 55 691 306 943 1.82e-92 315
Msa0501560 AT4G01020.1 32.537 670 387 17 55 691 303 940 2.52e-91 312
Msa0501560 AT1G33390.2 29.297 512 269 12 244 688 597 1082 6.42e-53 198
Msa0501560 AT1G33390.2 37.162 296 152 4 44 308 230 522 1.86e-49 187
Msa0501560 AT1G33390.1 29.297 512 269 12 244 688 597 1082 6.42e-53 198
Msa0501560 AT1G33390.1 37.162 296 152 4 44 308 230 522 1.86e-49 187
Msa0501560 AT2G01130.2 29.673 428 265 12 267 677 431 839 5.35e-52 195
Msa0501560 AT2G01130.2 44.500 200 109 2 48 247 148 345 2.46e-44 172
Msa0501560 AT2G01130.1 29.673 428 265 12 267 677 496 904 6.98e-52 194
Msa0501560 AT2G01130.1 44.500 200 109 2 48 247 213 410 2.07e-44 172
Msa0501560 AT5G04895.1 32.243 428 259 11 267 679 537 948 8.79e-48 182
Msa0501560 AT5G04895.1 43.689 206 114 2 42 247 247 450 1.82e-44 172
Msa0501560 AT1G58060.1 28.541 473 258 12 270 677 916 1373 1.93e-44 172
Msa0501560 AT1G58060.1 36.576 257 134 5 15 247 563 814 1.14e-36 148
Msa0501560 AT1G58050.1 32.286 350 203 10 270 598 883 1219 2.46e-41 163
Msa0501560 AT1G58050.1 37.281 228 120 6 44 256 586 805 6.41e-35 143
Msa0501560 AT2G30800.1 31.117 376 226 10 270 629 552 910 2.88e-39 156
Msa0501560 AT2G30800.1 38.725 204 119 2 47 247 179 379 3.98e-39 156
Msa0501560 AT2G30800.2 31.117 376 226 10 270 629 209 567 4.15e-39 155
Msa0501560 AT1G06670.1 37.500 208 123 3 44 247 205 409 8.12e-38 152
Msa0501560 AT1G06670.1 31.445 353 209 10 254 589 556 892 1.20e-36 148
Msa0501560 AT1G06670.2 37.981 208 122 3 44 247 205 409 8.49e-38 152
Msa0501560 AT1G06670.2 31.445 353 209 10 254 589 556 892 8.86e-37 149
Msa0501560 AT2G47680.1 28.979 421 239 10 54 439 25 420 4.40e-36 146

Find 161 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAGGTACTTCGAGATTT+TGG 0.137069 3_4:+42880537 Msa0501560:CDS
ATCAGAAGTAGTTGCAAATT+TGG 0.141933 3_4:+42882782 Msa0501560:CDS
AGTTCTTACTTTGAAGAAAT+TGG 0.149859 3_4:+42883208 Msa0501560:CDS
CTGATATTTCGTTTGATATT+TGG 0.165237 3_4:-42882764 None:intergenic
ATGACAACTTTGTTAATTAT+AGG 0.214478 3_4:+42883612 Msa0501560:CDS
AGTTCGTGTTGAGTCTTTAT+TGG 0.226938 3_4:+42883028 Msa0501560:CDS
TCAGAAGTAGTTGCAAATTT+GGG 0.271066 3_4:+42882783 Msa0501560:CDS
GTCATCTTCTTGTGTTTATC+TGG 0.271098 3_4:-42881770 None:intergenic
AGATTAGATCTCAAAATTTC+AGG 0.273158 3_4:-42883176 None:intergenic
TTGGCTACAGATGTGTTATT+TGG 0.275009 3_4:+42882465 Msa0501560:CDS
GAAATGCTTTAGACTTTATA+CGG 0.280548 3_4:+42883115 Msa0501560:CDS
TGACAACTTTGTTAATTATA+GGG 0.289407 3_4:+42883613 Msa0501560:CDS
AGCAATGACGGATCCACTTT+TGG 0.303630 3_4:+42882398 Msa0501560:CDS
TCTTTAACTGGAGGAGGAGC+TGG 0.333089 3_4:-42882882 None:intergenic
GATTACTTGGAGGCTGCTAT+TGG 0.348967 3_4:+42882654 Msa0501560:CDS
TTCATTATAGATAACCCATT+CGG 0.367508 3_4:-42883873 None:intergenic
ACCTTCTGCTTTGCCAATCC+AGG 0.369085 3_4:-42882993 None:intergenic
GGAGGGCCTCCCTCTTTAAC+TGG 0.375040 3_4:-42882894 None:intergenic
TGAGACCTTAATGCGCGCTT+TGG 0.376030 3_4:+42883277 Msa0501560:CDS
CCCATTCGGGCTTGTGGTCT+AGG 0.378505 3_4:-42883859 None:intergenic
GTTCTTACTTTGAAGAAATT+GGG 0.379844 3_4:+42883209 Msa0501560:CDS
AAATCTAACAACGGTTTAAT+CGG 0.381429 3_4:+42880484 Msa0501560:CDS
GCTAGTGCGCATCAGAGATC+TGG 0.381481 3_4:+42883068 Msa0501560:CDS
GATACCACAATCTTCCTTCC+AGG 0.382569 3_4:-42882915 None:intergenic
CGCATTAAGGTCTCAGGTGC+AGG 0.393564 3_4:-42883269 None:intergenic
TAGCTGTTGTCGAACATTAT+CGG 0.393619 3_4:-42883648 None:intergenic
AAAACAATGAGGATGCTTCT+TGG 0.404378 3_4:+42883585 Msa0501560:CDS
GTTTAATCGGCAACAACCGC+TGG 0.413659 3_4:+42880497 Msa0501560:CDS
GTTAAAGAGGGAGGCCCTCC+TGG 0.415850 3_4:+42882897 Msa0501560:CDS
GCCCGTCTTATGAAAGTTCC+AGG 0.416721 3_4:+42882585 Msa0501560:CDS
AAAATCTTCTGCTGCATAGC+CGG 0.425489 3_4:-42882855 None:intergenic
TCGAAGTACCTTGGAGAGTA+AGG 0.426682 3_4:-42880529 None:intergenic
TCATTATAGATAACCCATTC+GGG 0.427898 3_4:-42883872 None:intergenic
TCATCTTTCTGCTGCCAAAC+GGG 0.430202 3_4:-42880577 None:intergenic
GAAGGTAACTTAACAAAGTT+GGG 0.430890 3_4:+42883332 Msa0501560:CDS
GCAGCTATTTGTGCCTCCTT+AGG 0.431681 3_4:-42883485 None:intergenic
CACTTCCAAAGCGCGCATTA+AGG 0.433144 3_4:-42883282 None:intergenic
ATAACAACCAACTTCAAATC+AGG 0.434270 3_4:-42882516 None:intergenic
AAATCTTCTGCTGCATAGCC+GGG 0.436768 3_4:-42882854 None:intergenic
TGAAGGTAACTTAACAAAGT+TGG 0.440141 3_4:+42883331 Msa0501560:CDS
CATCAGAGATCTGGGCGTGC+TGG 0.442454 3_4:+42883077 Msa0501560:CDS
ATCATCTTTCTGCTGCCAAA+CGG 0.443772 3_4:-42880578 None:intergenic
AGAACCACAAACAGATTACT+TGG 0.448099 3_4:+42882641 Msa0501560:CDS
GCCTCCAAGTAATCTGTTTG+TGG 0.449086 3_4:-42882645 None:intergenic
AGAGGAAAACCCTTCCCGTT+TGG 0.451777 3_4:+42880563 Msa0501560:CDS
TGTGTTATTTGGCCTTCTTA+AGG 0.456171 3_4:+42882476 Msa0501560:CDS
ATTACTTGGAGGCTGCTATT+GGG 0.460428 3_4:+42882655 Msa0501560:CDS
CTTCAAAGTAAGAACTGTGT+TGG 0.460613 3_4:-42883201 None:intergenic
AGCCACCTGCATGAAATATC+CGG 0.462962 3_4:-42883762 None:intergenic
TGCGCACTAGCCTTTGATAT+CGG 0.467457 3_4:-42883056 None:intergenic
GTGAGTATTGGCGAAGAGGT+TGG 0.468319 3_4:+42881863 Msa0501560:CDS
CCGCCGCGTGGCTGAAGAGA+TGG 0.470359 3_4:+42881838 Msa0501560:CDS
TTGTGGTCTAGGCAATTTGA+TGG 0.472349 3_4:-42883848 None:intergenic
TTTGGAAGTGTTGAATTACT+TGG 0.473740 3_4:+42883295 Msa0501560:CDS
ACTTTGTATCGTTCCAAAAG+TGG 0.474402 3_4:-42882411 None:intergenic
TAAAATGGTGCTACAGATCA+TGG 0.474882 3_4:-42883976 None:intergenic
AAACAGACCTGATTTGAAGT+TGG 0.479993 3_4:+42882509 Msa0501560:CDS
ATTCACACGCTTGAACCTGC+TGG 0.481478 3_4:+42882690 Msa0501560:CDS
TCCAAAATCTCGAAGTACCT+TGG 0.485014 3_4:-42880538 None:intergenic
CGACGACTCTACTGCTAAGA+TGG 0.486008 3_4:+42880459 Msa0501560:CDS
CCCTGGATTGGCAAAGCAGA+AGG 0.486863 3_4:+42882992 Msa0501560:CDS
CTCGTTGGTGAGACCGGTAG+TGG 0.487818 3_4:+42880637 Msa0501560:CDS
ATCGGCAACAACCGCTGGAA+CGG 0.489625 3_4:+42880502 Msa0501560:CDS
TACAATGGTACAACTTTCAC+AGG 0.491989 3_4:-42882819 None:intergenic
TTGAATTTCGATGATGGGTA+CGG 0.495219 3_4:+42880402 None:intergenic
AGCTCCTCCTCCAGTTAAAG+AGG 0.495297 3_4:+42882884 Msa0501560:CDS
TGCAACACTTGAAGCCGAAA+AGG 0.500353 3_4:+42882542 Msa0501560:CDS
CAGTACCCAACTGCTTTATC+CGG 0.501293 3_4:+42883462 Msa0501560:CDS
CTTTCTGCTGCCAAACGGGA+AGG 0.504024 3_4:-42880573 None:intergenic
TTGATTCTCGTTGGTGAGAC+CGG 0.511897 3_4:+42880631 Msa0501560:CDS
AAAGCGCGCATTAAGGTCTC+AGG 0.513793 3_4:-42883275 None:intergenic
CATCTCTTCAGCCACGCGGC+GGG 0.514778 3_4:-42881837 None:intergenic
ACCTGGAACTTTCATAAGAC+GGG 0.519852 3_4:-42882586 None:intergenic
AGATCTCAAAATTTCAGGAT+AGG 0.521883 3_4:-42883171 None:intergenic
CTGCGGATGAAGCGAAAGCT+AGG 0.523995 3_4:+42883504 Msa0501560:CDS
TGAGGCACATGAAAGGACTT+TGG 0.527365 3_4:+42882446 Msa0501560:CDS
CTATTTGTGCCTCCTTAGGC+CGG 0.527844 3_4:-42883481 None:intergenic
GCCTAGACCACAAGCCCGAA+TGG 0.527994 3_4:+42883858 Msa0501560:CDS
TAACATAGATTTCTAACAGA+TGG 0.529822 3_4:+42882360 Msa0501560:intron
CTACTACGTCAATATAAGAA+AGG 0.532666 3_4:+42883730 Msa0501560:CDS
AGATAACCCATTCGGGCTTG+TGG 0.532896 3_4:-42883865 None:intergenic
CTTAGGCCGGATAAAGCAGT+TGG 0.533039 3_4:-42883468 None:intergenic
CTATGTTGTTGACCCTGGAT+TGG 0.533065 3_4:+42882980 Msa0501560:CDS
CCTAGACCACAAGCCCGAAT+GGG 0.538287 3_4:+42883859 Msa0501560:CDS
ATAAGAAAGGCAATGCTAGC+CGG 0.539169 3_4:+42883743 Msa0501560:CDS
CCTCCCTCTTTAACTGGAGG+AGG 0.540067 3_4:-42882888 None:intergenic
TCAGCATAGAAAATTTCCAC+TGG 0.541751 3_4:-42882618 None:intergenic
TTTCTGCTGCCAAACGGGAA+GGG 0.544156 3_4:-42880572 None:intergenic
CTAGTGCGCATCAGAGATCT+GGG 0.545232 3_4:+42883069 Msa0501560:CDS
GGGTACGGCGATGAAGAGAA+AGG 0.547771 3_4:+42880417 Msa0501560:CDS
ATAGTCTATGTTGTTGACCC+TGG 0.549931 3_4:+42882975 Msa0501560:CDS
ATTGTATTCTACTCTTCCCC+CGG 0.550773 3_4:+42882836 Msa0501560:CDS
TCCAGGTAGGTTACATCCAG+TGG 0.553901 3_4:+42882602 Msa0501560:CDS
TAAAGTCTAAAGCATTTCCC+TGG 0.554376 3_4:-42883110 None:intergenic
TCCACTGGATGTAACCTACC+TGG 0.555689 3_4:-42882603 None:intergenic
TTGGAAGTGTTGAATTACTT+GGG 0.557990 3_4:+42883296 Msa0501560:CDS
ACAACAGCTAGTGCGTATCA+TGG 0.558197 3_4:+42883661 Msa0501560:CDS
ATTGGTGTCTCCGATATCAA+AGG 0.559352 3_4:+42883046 Msa0501560:CDS
CTTTAACTGGAGGAGGAGCT+GGG 0.560680 3_4:-42882881 None:intergenic
AGCTAGTGCGTATCATGGCT+CGG 0.562361 3_4:+42883666 Msa0501560:CDS
GTTGAATTACTTGGGTGCAA+TGG 0.563629 3_4:+42883304 Msa0501560:CDS
GATTATGAGTGAGTTTCCGT+TGG 0.563935 3_4:+42883358 Msa0501560:CDS
AAAACAAGTATGTCTCCAGC+AGG 0.564551 3_4:-42882705 None:intergenic
CAACTGCTTTATCCGGCCTA+AGG 0.565176 3_4:+42883469 Msa0501560:CDS
CCTTCTGCTTTGCCAATCCA+GGG 0.567284 3_4:-42882992 None:intergenic
ATGAATATGTTCTTACGAGT+CGG 0.567963 3_4:+42883891 Msa0501560:CDS
CAGAAGTAGTTGCAAATTTG+GGG 0.570171 3_4:+42882784 Msa0501560:CDS
TACCTGGAACTTTCATAAGA+CGG 0.575168 3_4:-42882587 None:intergenic
GCTAGGTTTGCACACATCGA+TGG 0.576129 3_4:+42883521 Msa0501560:CDS
AAGAGGGAGGCCCTCCTGGA+AGG 0.576496 3_4:+42882901 Msa0501560:CDS
CAAAGTGATTATTCTTGATG+AGG 0.576742 3_4:+42882428 Msa0501560:CDS
TTCTTATATTGACGTAGTAG+TGG 0.576812 3_4:-42883727 None:intergenic
TCGTTTGAACAGTTGAACTC+AGG 0.579830 3_4:-42883413 None:intergenic
CGTGCTGGAAGAACACAACC+AGG 0.580489 3_4:+42883092 Msa0501560:CDS
GAAACTTCATTGACAATCGA+TGG 0.583802 3_4:+42882951 Msa0501560:CDS
ACAAGCATCTTTGACATCTG+AGG 0.589350 3_4:-42883383 None:intergenic
CTGCTTTATCCGGCCTAAGG+AGG 0.589664 3_4:+42883472 Msa0501560:CDS
AATCTTCTGCTGCATAGCCG+GGG 0.593816 3_4:-42882853 None:intergenic
ACCACAAACAGATTACTTGG+AGG 0.594407 3_4:+42882644 Msa0501560:CDS
ATGCACTCAGCCACGTAGAG+TGG 0.594987 3_4:+42881799 Msa0501560:CDS
ACGGAAAACCTTACTCTCCA+AGG 0.595423 3_4:+42880521 Msa0501560:CDS
TTCTTGATGAGGCACATGAA+AGG 0.595611 3_4:+42882439 Msa0501560:CDS
GAAGAGATGGATGTGAGTAT+TGG 0.596234 3_4:+42881851 Msa0501560:CDS
CTTGACAGTTAAAGACAAGC+AGG 0.596759 3_4:+42883811 Msa0501560:CDS
AGCCGGATATTTCATGCAGG+TGG 0.598664 3_4:+42883760 Msa0501560:CDS
AAAGACTCAACACGAACTCG+AGG 0.601959 3_4:-42883023 None:intergenic
CAAGCATCTTTGACATCTGA+GGG 0.603507 3_4:-42883382 None:intergenic
TTAGGCCGGATAAAGCAGTT+GGG 0.608800 3_4:-42883467 None:intergenic
TTTGACATCTGAGGGTCCAA+CGG 0.616105 3_4:-42883374 None:intergenic
TGACAGATATACGTGGTGAA+TGG 0.626358 3_4:+42883930 Msa0501560:CDS
GGATGTGAGTATTGGCGAAG+AGG 0.628421 3_4:+42881859 Msa0501560:CDS
GCTAGCCGGATATTTCATGC+AGG 0.630136 3_4:+42883757 Msa0501560:CDS
CCATCTCTTCAGCCACGCGG+CGG 0.630747 3_4:-42881838 None:intergenic
GCTCCTCCTCCAGTTAAAGA+GGG 0.631658 3_4:+42882885 Msa0501560:CDS
GGAGGCTGCTATTGGGACAG+TGG 0.633412 3_4:+42882662 Msa0501560:CDS
GTCTTATGAAAGTTCCAGGT+AGG 0.637788 3_4:+42882589 Msa0501560:CDS
GGGCCTCCCTCTTTAACTGG+AGG 0.641108 3_4:-42882891 None:intergenic
CCCTCCTGGAAGGAAGATTG+TGG 0.642322 3_4:+42882911 Msa0501560:CDS
ATTAAGGTCTCAGGTGCAGG+AGG 0.644515 3_4:-42883266 None:intergenic
TTGGGTGCAATGGATGATGA+AGG 0.644639 3_4:+42883314 Msa0501560:CDS
GACATTGCAGCCACTCTACG+TGG 0.649221 3_4:-42881809 None:intergenic
ATCTTCTGCTGCATAGCCGG+GGG 0.659970 3_4:-42882852 None:intergenic
CGGTAGTGGCAAAACAACCC+AGG 0.660141 3_4:+42880651 Msa0501560:CDS
AAGACTCAACACGAACTCGA+GGG 0.660298 3_4:-42883022 None:intergenic
ACCACAATCTTCCTTCCAGG+AGG 0.661706 3_4:-42882912 None:intergenic
AGAAGTAGTTGCAAATTTGG+GGG 0.665203 3_4:+42882785 Msa0501560:CDS
CCACAATCTTCCTTCCAGGA+GGG 0.665684 3_4:-42882911 None:intergenic
CAGCTTCTAGAACAAACTGA+GGG 0.668749 3_4:-42881733 None:intergenic
AAAATTTCAGGATAGGTCTG+CGG 0.670474 3_4:-42883164 None:intergenic
ACAGCTTCTAGAACAAACTG+AGG 0.672131 3_4:-42881734 None:intergenic
CCTCCTCCAGTTAAAGAGGG+AGG 0.672691 3_4:+42882888 Msa0501560:CDS
AATGTCTGTTTCCCGCCGCG+TGG 0.674837 3_4:+42881826 Msa0501560:CDS
TAAGGAGGCACAAATAGCTG+CGG 0.678653 3_4:+42883487 Msa0501560:CDS
TGCTACAGATCATGGTAATG+TGG 0.682784 3_4:-42883968 None:intergenic
TGCCTACAAGCAAAACAATG+AGG 0.686666 3_4:+42883574 Msa0501560:CDS
GCTCATCTTGATCAGCAGAG+AGG 0.708504 3_4:+42883782 Msa0501560:CDS
AAGATGGTGAAATCTAACAA+CGG 0.724639 3_4:+42880475 Msa0501560:CDS
CGTACTGTGACAGATATACG+TGG 0.732647 3_4:+42883923 Msa0501560:CDS
CATCCATCTCTTCAGCCACG+CGG 0.759154 3_4:-42881841 None:intergenic
ACAATGGTACAACTTTCACA+GGG 0.759539 3_4:-42882818 None:intergenic
GTGCTGGAAGAACACAACCA+GGG 0.766690 3_4:+42883093 Msa0501560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTGTAAAATTTTGATA+AGG - chr3_4:42881024-42881043 None:intergenic 15.0%
!!! TGATTTTTTGAAGGTTTTTA+AGG + chr3_4:42880597-42880616 Msa0501560:CDS 20.0%
!!! TCTATAAGTTTTTTCAACAA+AGG + chr3_4:42880712-42880731 Msa0501560:intron 20.0%
!! TAAAAATAACCTATATGATC+AGG + chr3_4:42881286-42881305 Msa0501560:intron 20.0%
!! AGAATTTAGTAGTTAATTGT+AGG + chr3_4:42881603-42881622 Msa0501560:intron 20.0%
!! ATTTAATACTAGATGTGTTA+TGG + chr3_4:42881638-42881657 Msa0501560:intron 20.0%
!! TTTAATACTAGATGTGTTAT+GGG + chr3_4:42881639-42881658 Msa0501560:intron 20.0%
!!! TTGTTTTTGTTGTGTAATTT+TGG + chr3_4:42881701-42881720 Msa0501560:intron 20.0%
!!! TGTTTTTGTTGTGTAATTTT+GGG + chr3_4:42881702-42881721 Msa0501560:intron 20.0%
!! TATCAAATCTAGACAATTAA+GGG - chr3_4:42882068-42882087 None:intergenic 20.0%
!! ATATCAAATCTAGACAATTA+AGG - chr3_4:42882069-42882088 None:intergenic 20.0%
!! AAATATCAACAAAGATACTT+TGG - chr3_4:42882111-42882130 None:intergenic 20.0%
!!! ATGTTTCTGAATTATATGAA+CGG + chr3_4:42882159-42882178 Msa0501560:intron 20.0%
!! AATTATATGAACGGTATATT+AGG + chr3_4:42882168-42882187 Msa0501560:intron 20.0%
!! ATTTGAGAATAAACAATATC+AGG - chr3_4:42882321-42882340 None:intergenic 20.0%
!!! AAAATAGCTTTTAACCTTTT+CGG - chr3_4:42882559-42882578 None:intergenic 20.0%
!!! AAGGTTAAAAGCTATTTTTT+TGG + chr3_4:42882561-42882580 Msa0501560:CDS 20.0%
!! ATGACAACTTTGTTAATTAT+AGG + chr3_4:42883612-42883631 Msa0501560:CDS 20.0%
!! TGACAACTTTGTTAATTATA+GGG + chr3_4:42883613-42883632 Msa0501560:CDS 20.0%
! AAATCTAACAACGGTTTAAT+CGG + chr3_4:42880484-42880503 Msa0501560:CDS 25.0%
! CCTAACAAACAAATAAGATA+GGG - chr3_4:42880853-42880872 None:intergenic 25.0%
! TCCTAACAAACAAATAAGAT+AGG - chr3_4:42880854-42880873 None:intergenic 25.0%
! TATAGATCTAAGTGTATGTT+TGG - chr3_4:42881081-42881100 None:intergenic 25.0%
!! TAGTCTCTAAAAAGTATACA+AGG + chr3_4:42881421-42881440 Msa0501560:intron 25.0%
!! TCTAAAAAGTATACAAGGTA+TGG + chr3_4:42881426-42881445 Msa0501560:intron 25.0%
! ATAACACGTGATGATATATT+CGG + chr3_4:42881555-42881574 Msa0501560:intron 25.0%
! TTTAGTAGTTAATTGTAGGA+TGG + chr3_4:42881607-42881626 Msa0501560:intron 25.0%
! TTAGTAGTTAATTGTAGGAT+GGG + chr3_4:42881608-42881627 Msa0501560:intron 25.0%
!! CATTTTGCTTATAATAGTGA+CGG - chr3_4:42882004-42882023 None:intergenic 25.0%
! TTATAATAGTGACCAAGATT+TGG + chr3_4:42882230-42882249 Msa0501560:intron 25.0%
! TATAATAGTGACCAAGATTT+GGG + chr3_4:42882231-42882250 Msa0501560:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+TGG + chr3_4:42882266-42882285 Msa0501560:intron 25.0%
! TAAACAATATCAGGAAAACA+AGG - chr3_4:42882312-42882331 None:intergenic 25.0%
! TCTGTTAGAAATCTATGTTA+AGG - chr3_4:42882360-42882379 None:intergenic 25.0%
! TAACATAGATTTCTAACAGA+TGG + chr3_4:42882360-42882379 Msa0501560:intron 25.0%
!!! TTTTAAGAACTTCCTTAAGA+AGG - chr3_4:42882491-42882510 None:intergenic 25.0%
! CTGATATTTCGTTTGATATT+TGG - chr3_4:42882767-42882786 None:intergenic 25.0%
!! GAAATGCTTTAGACTTTATA+CGG + chr3_4:42883115-42883134 Msa0501560:CDS 25.0%
! AGATTAGATCTCAAAATTTC+AGG - chr3_4:42883179-42883198 None:intergenic 25.0%
!! AGTTCTTACTTTGAAGAAAT+TGG + chr3_4:42883208-42883227 Msa0501560:CDS 25.0%
!! GTTCTTACTTTGAAGAAATT+GGG + chr3_4:42883209-42883228 Msa0501560:CDS 25.0%
! TTCATTATAGATAACCCATT+CGG - chr3_4:42883876-42883895 None:intergenic 25.0%
AAGATGGTGAAATCTAACAA+CGG + chr3_4:42880475-42880494 Msa0501560:CDS 30.0%
!!! GCAGAAAGATGATTTTTTGA+AGG + chr3_4:42880588-42880607 Msa0501560:CDS 30.0%
!!! AATCAGATTTTGATTCTCGT+TGG + chr3_4:42880622-42880641 Msa0501560:CDS 30.0%
TAGAATACAACAACTAACCT+GGG - chr3_4:42880671-42880690 None:intergenic 30.0%
TTAGAATACAACAACTAACC+TGG - chr3_4:42880672-42880691 None:intergenic 30.0%
! CCCTATCTTATTTGTTTGTT+AGG + chr3_4:42880850-42880869 Msa0501560:intron 30.0%
!! TGACAACTGCATTTTAATCA+AGG + chr3_4:42881114-42881133 Msa0501560:intron 30.0%
!!! TTAGTCCTTATGGTTTTGTT+TGG + chr3_4:42881143-42881162 Msa0501560:intron 30.0%
! TTTTGCCAAACAAAACCATA+AGG - chr3_4:42881151-42881170 None:intergenic 30.0%
!!! GTTTTGTTTGGCAAAAATAG+CGG + chr3_4:42881155-42881174 Msa0501560:intron 30.0%
! ATTGTTGATAAGCTAGCTTA+TGG + chr3_4:42881178-42881197 Msa0501560:intron 30.0%
! TTTTCTTCTCCTGATCATAT+AGG - chr3_4:42881298-42881317 None:intergenic 30.0%
TGAGGAAAAAAAGACTCATT+TGG - chr3_4:42881326-42881345 None:intergenic 30.0%
!! ACACTGATTTGCAAGTATAT+AGG - chr3_4:42881397-42881416 None:intergenic 30.0%
ATGAAACGACTATATGGTAA+TGG - chr3_4:42881537-42881556 None:intergenic 30.0%
ATGATATATTCGGCTGAAAT+TGG + chr3_4:42881565-42881584 Msa0501560:intron 30.0%
TAGTAGTTAATTGTAGGATG+GGG + chr3_4:42881609-42881628 Msa0501560:intron 30.0%
ATAATAGTGACCAAGATTTG+GGG + chr3_4:42882232-42882251 Msa0501560:intron 30.0%
AAAAAAAAAGCCCCAAATCT+TGG - chr3_4:42882245-42882264 None:intergenic 30.0%
CAAAGTGATTATTCTTGATG+AGG + chr3_4:42882428-42882447 Msa0501560:CDS 30.0%
ATAACAACCAACTTCAAATC+AGG - chr3_4:42882519-42882538 None:intergenic 30.0%
!! GACATACTTGTTTTTCTTAC+TGG + chr3_4:42882714-42882733 Msa0501560:CDS 30.0%
ATCAGAAGTAGTTGCAAATT+TGG + chr3_4:42882782-42882801 Msa0501560:CDS 30.0%
TCAGAAGTAGTTGCAAATTT+GGG + chr3_4:42882783-42882802 Msa0501560:CDS 30.0%
AGATCTCAAAATTTCAGGAT+AGG - chr3_4:42883174-42883193 None:intergenic 30.0%
!!! TTTAGTGCATTTTGACTTCA+TGG + chr3_4:42883241-42883260 Msa0501560:CDS 30.0%
!! TTTGGAAGTGTTGAATTACT+TGG + chr3_4:42883295-42883314 Msa0501560:CDS 30.0%
!! TTGGAAGTGTTGAATTACTT+GGG + chr3_4:42883296-42883315 Msa0501560:CDS 30.0%
TGAAGGTAACTTAACAAAGT+TGG + chr3_4:42883331-42883350 Msa0501560:CDS 30.0%
GAAGGTAACTTAACAAAGTT+GGG + chr3_4:42883332-42883351 Msa0501560:CDS 30.0%
TTCTTATATTGACGTAGTAG+TGG - chr3_4:42883730-42883749 None:intergenic 30.0%
CTACTACGTCAATATAAGAA+AGG + chr3_4:42883730-42883749 Msa0501560:CDS 30.0%
TCATTATAGATAACCCATTC+GGG - chr3_4:42883875-42883894 None:intergenic 30.0%
ATGAATATGTTCTTACGAGT+CGG + chr3_4:42883891-42883910 Msa0501560:CDS 30.0%
!!! TTTTTTCAACAAAGGTGCAG+TGG + chr3_4:42880720-42880739 Msa0501560:intron 35.0%
GTGTTTCAAAGTGATTCTAG+AGG + chr3_4:42880882-42880901 Msa0501560:intron 35.0%
AAAGCTACAATTGTAGCTTC+AGG - chr3_4:42880979-42880998 None:intergenic 35.0%
ATAGCTTATATGCACATGTG+AGG - chr3_4:42881344-42881363 None:intergenic 35.0%
TAATGGCTGCATCTTAATCA+AGG - chr3_4:42881520-42881539 None:intergenic 35.0%
CGTGTTATGAAACGACTATA+TGG - chr3_4:42881543-42881562 None:intergenic 35.0%
GATGTGTTATGGGATAAGAT+TGG + chr3_4:42881649-42881668 Msa0501560:intron 35.0%
! GATTGGTTATGTAAGTGTGT+AGG + chr3_4:42881666-42881685 Msa0501560:intron 35.0%
GTCATCTTCTTGTGTTTATC+TGG - chr3_4:42881773-42881792 None:intergenic 35.0%
! TTGCTTATAATAGTGACGGA+TGG - chr3_4:42882000-42882019 None:intergenic 35.0%
TTGCTTATAATAGTGACTGG+AGG + chr3_4:42882269-42882288 Msa0501560:intron 35.0%
TGCTTATAATAGTGACTGGA+GGG + chr3_4:42882270-42882289 Msa0501560:intron 35.0%
ACTTTGTATCGTTCCAAAAG+TGG - chr3_4:42882414-42882433 None:intergenic 35.0%
! TTGGCTACAGATGTGTTATT+TGG + chr3_4:42882465-42882484 Msa0501560:CDS 35.0%
!! TGTGTTATTTGGCCTTCTTA+AGG + chr3_4:42882476-42882495 Msa0501560:CDS 35.0%
! AAACAGACCTGATTTGAAGT+TGG + chr3_4:42882509-42882528 Msa0501560:CDS 35.0%
TACCTGGAACTTTCATAAGA+CGG - chr3_4:42882590-42882609 None:intergenic 35.0%
TCAGCATAGAAAATTTCCAC+TGG - chr3_4:42882621-42882640 None:intergenic 35.0%
AGAACCACAAACAGATTACT+TGG + chr3_4:42882641-42882660 Msa0501560:CDS 35.0%
!! ACTTGTTTTTCTTACTGGAG+AGG + chr3_4:42882719-42882738 Msa0501560:CDS 35.0%
CAGAAGTAGTTGCAAATTTG+GGG + chr3_4:42882784-42882803 Msa0501560:CDS 35.0%
AGAAGTAGTTGCAAATTTGG+GGG + chr3_4:42882785-42882804 Msa0501560:CDS 35.0%
ACAATGGTACAACTTTCACA+GGG - chr3_4:42882821-42882840 None:intergenic 35.0%
TACAATGGTACAACTTTCAC+AGG - chr3_4:42882822-42882841 None:intergenic 35.0%
GAAACTTCATTGACAATCGA+TGG + chr3_4:42882951-42882970 Msa0501560:CDS 35.0%
AGTTCGTGTTGAGTCTTTAT+TGG + chr3_4:42883028-42883047 Msa0501560:CDS 35.0%
! TAAAGTCTAAAGCATTTCCC+TGG - chr3_4:42883113-42883132 None:intergenic 35.0%
AAAATTTCAGGATAGGTCTG+CGG - chr3_4:42883167-42883186 None:intergenic 35.0%
CTTCAAAGTAAGAACTGTGT+TGG - chr3_4:42883204-42883223 None:intergenic 35.0%
!! ATCCTCATTGTTTTGCTTGT+AGG - chr3_4:42883579-42883598 None:intergenic 35.0%
AAAACAATGAGGATGCTTCT+TGG + chr3_4:42883585-42883604 Msa0501560:CDS 35.0%
TAGCTGTTGTCGAACATTAT+CGG - chr3_4:42883651-42883670 None:intergenic 35.0%
!! TCCAAGGTACTTCGAGATTT+TGG + chr3_4:42880537-42880556 Msa0501560:CDS 40.0%
! TCCAAAATCTCGAAGTACCT+TGG - chr3_4:42880541-42880560 None:intergenic 40.0%
!! ACTTCGAGATTTTGGAGAAG+AGG + chr3_4:42880545-42880564 Msa0501560:CDS 40.0%
ATCATCTTTCTGCTGCCAAA+CGG - chr3_4:42880581-42880600 None:intergenic 40.0%
ACCAACGTCATACTTTGCAT+AGG + chr3_4:42880810-42880829 Msa0501560:intron 40.0%
CCAACGTCATACTTTGCATA+GGG + chr3_4:42880811-42880830 Msa0501560:intron 40.0%
CTACAATTGTAGCTTCAGGT+AGG - chr3_4:42880975-42880994 None:intergenic 40.0%
! AAGGCACTCATTAGTCCTTA+TGG + chr3_4:42881133-42881152 Msa0501560:intron 40.0%
! GTTGATAAGCTAGCTTATGG+CGG + chr3_4:42881181-42881200 Msa0501560:intron 40.0%
GCTTATACCGGATAAGTTTG+CGG + chr3_4:42881209-42881228 Msa0501560:intron 40.0%
TGTCATTCCGCAAACTTATC+CGG - chr3_4:42881219-42881238 None:intergenic 40.0%
TTTGCGGAATGACAAGCTAT+AGG + chr3_4:42881225-42881244 Msa0501560:intron 40.0%
GCAAGTATATAGGCTCTGTT+TGG - chr3_4:42881387-42881406 None:intergenic 40.0%
TTAATTGTAGGATGGGGACT+TGG + chr3_4:42881615-42881634 Msa0501560:intron 40.0%
!! CAGCTTCTAGAACAAACTGA+GGG - chr3_4:42881736-42881755 None:intergenic 40.0%
!! ACAGCTTCTAGAACAAACTG+AGG - chr3_4:42881737-42881756 None:intergenic 40.0%
GAAGAGATGGATGTGAGTAT+TGG + chr3_4:42881851-42881870 Msa0501560:CDS 40.0%
!! GCTTTTGAGAGAAGCAATGA+CGG + chr3_4:42882386-42882405 Msa0501560:CDS 40.0%
TTCTTGATGAGGCACATGAA+AGG + chr3_4:42882439-42882458 Msa0501560:CDS 40.0%
ACCTGGAACTTTCATAAGAC+GGG - chr3_4:42882589-42882608 None:intergenic 40.0%
GTCTTATGAAAGTTCCAGGT+AGG + chr3_4:42882589-42882608 Msa0501560:CDS 40.0%
ACCACAAACAGATTACTTGG+AGG + chr3_4:42882644-42882663 Msa0501560:CDS 40.0%
ATTACTTGGAGGCTGCTATT+GGG + chr3_4:42882655-42882674 Msa0501560:CDS 40.0%
AAAACAAGTATGTCTCCAGC+AGG - chr3_4:42882708-42882727 None:intergenic 40.0%
ATTGTATTCTACTCTTCCCC+CGG + chr3_4:42882836-42882855 Msa0501560:CDS 40.0%
AAAATCTTCTGCTGCATAGC+CGG - chr3_4:42882858-42882877 None:intergenic 40.0%
ATAGTCTATGTTGTTGACCC+TGG + chr3_4:42882975-42882994 Msa0501560:CDS 40.0%
! ATTGGTGTCTCCGATATCAA+AGG + chr3_4:42883046-42883065 Msa0501560:CDS 40.0%
GTTGAATTACTTGGGTGCAA+TGG + chr3_4:42883304-42883323 Msa0501560:CDS 40.0%
GATTATGAGTGAGTTTCCGT+TGG + chr3_4:42883358-42883377 Msa0501560:CDS 40.0%
CAAGCATCTTTGACATCTGA+GGG - chr3_4:42883385-42883404 None:intergenic 40.0%
ACAAGCATCTTTGACATCTG+AGG - chr3_4:42883386-42883405 None:intergenic 40.0%
TCGTTTGAACAGTTGAACTC+AGG - chr3_4:42883416-42883435 None:intergenic 40.0%
!! CATTGTTTTGCTTGTAGGCA+TGG - chr3_4:42883574-42883593 None:intergenic 40.0%
TGCCTACAAGCAAAACAATG+AGG + chr3_4:42883574-42883593 Msa0501560:CDS 40.0%
ATAAGAAAGGCAATGCTAGC+CGG + chr3_4:42883743-42883762 Msa0501560:CDS 40.0%
CTTGACAGTTAAAGACAAGC+AGG + chr3_4:42883811-42883830 Msa0501560:CDS 40.0%
TTGTGGTCTAGGCAATTTGA+TGG - chr3_4:42883851-42883870 None:intergenic 40.0%
TGACAGATATACGTGGTGAA+TGG + chr3_4:42883930-42883949 Msa0501560:CDS 40.0%
! AGTAAGGTTTTCCGTTCCAG+CGG - chr3_4:42880516-42880535 None:intergenic 45.0%
ACGGAAAACCTTACTCTCCA+AGG + chr3_4:42880521-42880540 Msa0501560:CDS 45.0%
! TCGAAGTACCTTGGAGAGTA+AGG - chr3_4:42880532-42880551 None:intergenic 45.0%
TCATCTTTCTGCTGCCAAAC+GGG - chr3_4:42880580-42880599 None:intergenic 45.0%
! TTGATTCTCGTTGGTGAGAC+CGG + chr3_4:42880631-42880650 Msa0501560:CDS 45.0%
CCCTATGCAAAGTATGACGT+TGG - chr3_4:42880814-42880833 None:intergenic 45.0%
AAATAAGATAGGGCTGTCCG+TGG - chr3_4:42880843-42880862 None:intergenic 45.0%
! ATGGCGGAGATAGCTTATAC+CGG + chr3_4:42881197-42881216 Msa0501560:intron 45.0%
!!! AGCAATGACGGATCCACTTT+TGG + chr3_4:42882398-42882417 Msa0501560:CDS 45.0%
TGAGGCACATGAAAGGACTT+TGG + chr3_4:42882446-42882465 Msa0501560:CDS 45.0%
TGCAACACTTGAAGCCGAAA+AGG + chr3_4:42882542-42882561 Msa0501560:CDS 45.0%
GCCTCCAAGTAATCTGTTTG+TGG - chr3_4:42882648-42882667 None:intergenic 45.0%
GATTACTTGGAGGCTGCTAT+TGG + chr3_4:42882654-42882673 Msa0501560:CDS 45.0%
AGTTGCAAATTTGGGGGACA+AGG + chr3_4:42882791-42882810 Msa0501560:CDS 45.0%
GGGGGAAGAGTAGAATACAA+TGG - chr3_4:42882837-42882856 None:intergenic 45.0%
AAATCTTCTGCTGCATAGCC+GGG - chr3_4:42882857-42882876 None:intergenic 45.0%
GATACCACAATCTTCCTTCC+AGG - chr3_4:42882918-42882937 None:intergenic 45.0%
CTATGTTGTTGACCCTGGAT+TGG + chr3_4:42882980-42882999 Msa0501560:CDS 45.0%
AAGACTCAACACGAACTCGA+GGG - chr3_4:42883025-42883044 None:intergenic 45.0%
AAAGACTCAACACGAACTCG+AGG - chr3_4:42883026-42883045 None:intergenic 45.0%
!! TGCGCACTAGCCTTTGATAT+CGG - chr3_4:42883059-42883078 None:intergenic 45.0%
TTGGGTGCAATGGATGATGA+AGG + chr3_4:42883314-42883333 Msa0501560:CDS 45.0%
TTTGACATCTGAGGGTCCAA+CGG - chr3_4:42883377-42883396 None:intergenic 45.0%
CAGTACCCAACTGCTTTATC+CGG + chr3_4:42883462-42883481 Msa0501560:CDS 45.0%
TTAGGCCGGATAAAGCAGTT+GGG - chr3_4:42883470-42883489 None:intergenic 45.0%
! TAAGGAGGCACAAATAGCTG+CGG + chr3_4:42883487-42883506 Msa0501560:CDS 45.0%
ACAACAGCTAGTGCGTATCA+TGG + chr3_4:42883661-42883680 Msa0501560:CDS 45.0%
AGCCACCTGCATGAAATATC+CGG - chr3_4:42883765-42883784 None:intergenic 45.0%
CGTACTGTGACAGATATACG+TGG + chr3_4:42883923-42883942 Msa0501560:CDS 45.0%
CGACGACTCTACTGCTAAGA+TGG + chr3_4:42880459-42880478 Msa0501560:CDS 50.0%
GTTTAATCGGCAACAACCGC+TGG + chr3_4:42880497-42880516 Msa0501560:CDS 50.0%
AGAGGAAAACCCTTCCCGTT+TGG + chr3_4:42880563-42880582 Msa0501560:CDS 50.0%
TTTCTGCTGCCAAACGGGAA+GGG - chr3_4:42880575-42880594 None:intergenic 50.0%
!! CTGGGTTGTTTTGCCACTAC+CGG - chr3_4:42880653-42880672 None:intergenic 50.0%
GTAACACACGCATGCATGCA+TGG - chr3_4:42880772-42880791 None:intergenic 50.0%
! TTTGCATAGGGCACTCACCA+CGG + chr3_4:42880823-42880842 Msa0501560:intron 50.0%
!! GGATGTGAGTATTGGCGAAG+AGG + chr3_4:42881859-42881878 Msa0501560:CDS 50.0%
!! GTGAGTATTGGCGAAGAGGT+TGG + chr3_4:42881863-42881882 Msa0501560:CDS 50.0%
GCCCGTCTTATGAAAGTTCC+AGG + chr3_4:42882585-42882604 Msa0501560:CDS 50.0%
TCCAGGTAGGTTACATCCAG+TGG + chr3_4:42882602-42882621 Msa0501560:CDS 50.0%
TCCACTGGATGTAACCTACC+TGG - chr3_4:42882606-42882625 None:intergenic 50.0%
ATTCACACGCTTGAACCTGC+TGG + chr3_4:42882690-42882709 Msa0501560:CDS 50.0%
TGCAAATTTGGGGGACAAGG+TGG + chr3_4:42882794-42882813 Msa0501560:CDS 50.0%
GCAAATTTGGGGGACAAGGT+GGG + chr3_4:42882795-42882814 Msa0501560:CDS 50.0%
AATCTTCTGCTGCATAGCCG+GGG - chr3_4:42882856-42882875 None:intergenic 50.0%
CTTTAACTGGAGGAGGAGCT+GGG - chr3_4:42882884-42882903 None:intergenic 50.0%
TCTTTAACTGGAGGAGGAGC+TGG - chr3_4:42882885-42882904 None:intergenic 50.0%
AGCTCCTCCTCCAGTTAAAG+AGG + chr3_4:42882884-42882903 Msa0501560:CDS 50.0%
GCTCCTCCTCCAGTTAAAGA+GGG + chr3_4:42882885-42882904 Msa0501560:CDS 50.0%
CCACAATCTTCCTTCCAGGA+GGG - chr3_4:42882914-42882933 None:intergenic 50.0%
ACCACAATCTTCCTTCCAGG+AGG - chr3_4:42882915-42882934 None:intergenic 50.0%
CCTTCTGCTTTGCCAATCCA+GGG - chr3_4:42882995-42883014 None:intergenic 50.0%
ACCTTCTGCTTTGCCAATCC+AGG - chr3_4:42882996-42883015 None:intergenic 50.0%
CTAGTGCGCATCAGAGATCT+GGG + chr3_4:42883069-42883088 Msa0501560:CDS 50.0%
GTGCTGGAAGAACACAACCA+GGG + chr3_4:42883093-42883112 Msa0501560:CDS 50.0%
ATTAAGGTCTCAGGTGCAGG+AGG - chr3_4:42883269-42883288 None:intergenic 50.0%
AAAGCGCGCATTAAGGTCTC+AGG - chr3_4:42883278-42883297 None:intergenic 50.0%
TGAGACCTTAATGCGCGCTT+TGG + chr3_4:42883277-42883296 Msa0501560:CDS 50.0%
CACTTCCAAAGCGCGCATTA+AGG - chr3_4:42883285-42883304 None:intergenic 50.0%
CTTAGGCCGGATAAAGCAGT+TGG - chr3_4:42883471-42883490 None:intergenic 50.0%
CAACTGCTTTATCCGGCCTA+AGG + chr3_4:42883469-42883488 Msa0501560:CDS 50.0%
CTATTTGTGCCTCCTTAGGC+CGG - chr3_4:42883484-42883503 None:intergenic 50.0%
GCAGCTATTTGTGCCTCCTT+AGG - chr3_4:42883488-42883507 None:intergenic 50.0%
GCTAGGTTTGCACACATCGA+TGG + chr3_4:42883521-42883540 Msa0501560:CDS 50.0%
AGCTAGTGCGTATCATGGCT+CGG + chr3_4:42883666-42883685 Msa0501560:CDS 50.0%
GCTAGCCGGATATTTCATGC+AGG + chr3_4:42883757-42883776 Msa0501560:CDS 50.0%
AGCCGGATATTTCATGCAGG+TGG + chr3_4:42883760-42883779 Msa0501560:CDS 50.0%
GCTCATCTTGATCAGCAGAG+AGG + chr3_4:42883782-42883801 Msa0501560:CDS 50.0%
AGATAACCCATTCGGGCTTG+TGG - chr3_4:42883868-42883887 None:intergenic 50.0%
GGGTACGGCGATGAAGAGAA+AGG + chr3_4:42880417-42880436 Msa0501560:CDS 55.0%
ATCGGCAACAACCGCTGGAA+CGG + chr3_4:42880502-42880521 Msa0501560:CDS 55.0%
CTTTCTGCTGCCAAACGGGA+AGG - chr3_4:42880576-42880595 None:intergenic 55.0%
! CGGTAGTGGCAAAACAACCC+AGG + chr3_4:42880651-42880670 Msa0501560:CDS 55.0%
ATGCACTCAGCCACGTAGAG+TGG + chr3_4:42881799-42881818 Msa0501560:CDS 55.0%
GACATTGCAGCCACTCTACG+TGG - chr3_4:42881812-42881831 None:intergenic 55.0%
CATCCATCTCTTCAGCCACG+CGG - chr3_4:42881844-42881863 None:intergenic 55.0%
ATCTTCTGCTGCATAGCCGG+GGG - chr3_4:42882855-42882874 None:intergenic 55.0%
CCTCCCTCTTTAACTGGAGG+AGG - chr3_4:42882891-42882910 None:intergenic 55.0%
CCTCCTCCAGTTAAAGAGGG+AGG + chr3_4:42882888-42882907 Msa0501560:CDS 55.0%
CCCTCCTGGAAGGAAGATTG+TGG + chr3_4:42882911-42882930 Msa0501560:CDS 55.0%
!! CCCTGGATTGGCAAAGCAGA+AGG + chr3_4:42882992-42883011 Msa0501560:CDS 55.0%
GCTAGTGCGCATCAGAGATC+TGG + chr3_4:42883068-42883087 Msa0501560:CDS 55.0%
CGTGCTGGAAGAACACAACC+AGG + chr3_4:42883092-42883111 Msa0501560:CDS 55.0%
CGCATTAAGGTCTCAGGTGC+AGG - chr3_4:42883272-42883291 None:intergenic 55.0%
CTGCTTTATCCGGCCTAAGG+AGG + chr3_4:42883472-42883491 Msa0501560:CDS 55.0%
CTGCGGATGAAGCGAAAGCT+AGG + chr3_4:42883504-42883523 Msa0501560:CDS 55.0%
CCTAGACCACAAGCCCGAAT+GGG + chr3_4:42883859-42883878 Msa0501560:CDS 55.0%
! CTCGTTGGTGAGACCGGTAG+TGG + chr3_4:42880637-42880656 Msa0501560:CDS 60.0%
AATGTCTGTTTCCCGCCGCG+TGG + chr3_4:42881826-42881845 Msa0501560:CDS 60.0%
GGAGGCTGCTATTGGGACAG+TGG + chr3_4:42882662-42882681 Msa0501560:CDS 60.0%
GGGCCTCCCTCTTTAACTGG+AGG - chr3_4:42882894-42882913 None:intergenic 60.0%
GGAGGGCCTCCCTCTTTAAC+TGG - chr3_4:42882897-42882916 None:intergenic 60.0%
GTTAAAGAGGGAGGCCCTCC+TGG + chr3_4:42882897-42882916 Msa0501560:CDS 60.0%
CATCAGAGATCTGGGCGTGC+TGG + chr3_4:42883077-42883096 Msa0501560:CDS 60.0%
GCCTAGACCACAAGCCCGAA+TGG + chr3_4:42883858-42883877 Msa0501560:CDS 60.0%
CCCATTCGGGCTTGTGGTCT+AGG - chr3_4:42883862-42883881 None:intergenic 60.0%
CATCTCTTCAGCCACGCGGC+GGG - chr3_4:42881840-42881859 None:intergenic 65.0%
CCATCTCTTCAGCCACGCGG+CGG - chr3_4:42881841-42881860 None:intergenic 65.0%
AAGAGGGAGGCCCTCCTGGA+AGG + chr3_4:42882901-42882920 Msa0501560:CDS 65.0%
CCGCCGCGTGGCTGAAGAGA+TGG + chr3_4:42881838-42881857 Msa0501560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 42880412 42883988 42880412 ID=Msa0501560;Name=Msa0501560
chr3_4 mRNA 42880412 42883988 42880412 ID=Msa0501560-mRNA-1;Parent=Msa0501560;Name=Msa0501560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|694
chr3_4 exon 42880412 42880672 42880412 ID=Msa0501560-mRNA-1:exon:9041;Parent=Msa0501560-mRNA-1
chr3_4 exon 42881731 42881933 42881731 ID=Msa0501560-mRNA-1:exon:9042;Parent=Msa0501560-mRNA-1
chr3_4 exon 42882368 42883988 42882368 ID=Msa0501560-mRNA-1:exon:9043;Parent=Msa0501560-mRNA-1
chr3_4 CDS 42880412 42880672 42880412 ID=Msa0501560-mRNA-1:cds;Parent=Msa0501560-mRNA-1
chr3_4 CDS 42881731 42881933 42881731 ID=Msa0501560-mRNA-1:cds;Parent=Msa0501560-mRNA-1
chr3_4 CDS 42882368 42883988 42882368 ID=Msa0501560-mRNA-1:cds;Parent=Msa0501560-mRNA-1
Gene Sequence

>Msa0501560

ATGATGGGTACGGCGATGAAGAGAAAGGCGAGTTTATTCGACGTCATCGACGACTCTACTGCTAAGATGGTGAAATCTAACAACGGTTTAATCGGCAACAACCGCTGGAACGGAAAACCTTACTCTCCAAGGTACTTCGAGATTTTGGAGAAGAGGAAAACCCTTCCCGTTTGGCAGCAGAAAGATGATTTTTTGAAGGTTTTTAAGGATAATCAGATTTTGATTCTCGTTGGTGAGACCGGTAGTGGCAAAACAACCCAGATCCCTCAGTTTGTTCTAGAAGCTGTTGATTTAGAGACTCCAGATAAACACAAGAAGATGACGATTGCATGCACTCAGCCACGTAGAGTGGCTGCAATGTCTGTTTCCCGCCGCGTGGCTGAAGAGATGGATGTGAGTATTGGCGAAGAGGTTGGTTATAGCATCAGATTTGAAGATTGTAGCAGTTCGAGAACAGTTTTGAAATTTCTAACAGATGGTATGCTTTTGAGAGAAGCAATGACGGATCCACTTTTGGAACGATACAAAGTGATTATTCTTGATGAGGCACATGAAAGGACTTTGGCTACAGATGTGTTATTTGGCCTTCTTAAGGAAGTTCTTAAAAACAGACCTGATTTGAAGTTGGTTGTTATGAGTGCAACACTTGAAGCCGAAAAGGTTAAAAGCTATTTTTTTGGAGCCCGTCTTATGAAAGTTCCAGGTAGGTTACATCCAGTGGAAATTTTCTATGCTGAAGAACCACAAACAGATTACTTGGAGGCTGCTATTGGGACAGTGGTGCAGATTCACACGCTTGAACCTGCTGGAGACATACTTGTTTTTCTTACTGGAGAGGAAGAGATAGAAAATGCATGCAGCCAAATATCAAACGAAATATCAGAAGTAGTTGCAAATTTGGGGGACAAGGTGGGCCCTGTGAAAGTTGTACCATTGTATTCTACTCTTCCCCCGGCTATGCAGCAGAAGATTTTTGACCCAGCTCCTCCTCCAGTTAAAGAGGGAGGCCCTCCTGGAAGGAAGATTGTGGTATCAACAAACATAGCTGAAACTTCATTGACAATCGATGGTATAGTCTATGTTGTTGACCCTGGATTGGCAAAGCAGAAGGTTTATAACCCTCGAGTTCGTGTTGAGTCTTTATTGGTGTCTCCGATATCAAAGGCTAGTGCGCATCAGAGATCTGGGCGTGCTGGAAGAACACAACCAGGGAAATGCTTTAGACTTTATACGGAAATGAGTTTCAATAATGATCTTCAGCCGCAGACCTATCCTGAAATTTTGAGATCTAATCTCTCCAACACAGTTCTTACTTTGAAGAAATTGGGCATAGACGATTTAGTGCATTTTGACTTCATGGATCCTCCTGCACCTGAGACCTTAATGCGCGCTTTGGAAGTGTTGAATTACTTGGGTGCAATGGATGATGAAGGTAACTTAACAAAGTTGGGTGAGATTATGAGTGAGTTTCCGTTGGACCCTCAGATGTCAAAGATGCTTGTTGTTAGTCCTGAGTTCAACTGTTCAAACGAGATTCTTTCAATTTGTGCGATGCTAGCAGTACCCAACTGCTTTATCCGGCCTAAGGAGGCACAAATAGCTGCGGATGAAGCGAAAGCTAGGTTTGCACACATCGATGGAGATCATCTCACACTCTTGAATGTATACCATGCCTACAAGCAAAACAATGAGGATGCTTCTTGGTGCTATGACAACTTTGTTAATTATAGGGTGTTGAAATCAGCCGATAATGTTCGACAACAGCTAGTGCGTATCATGGCTCGGTTTAATCTGAAGTTATGCAGCACTGACTTCAATAGTCGCCACTACTACGTCAATATAAGAAAGGCAATGCTAGCCGGATATTTCATGCAGGTGGCTCATCTTGATCAGCAGAGAGGACACTACTTGACAGTTAAAGACAAGCAGGAAGTATACTTGCATCCATCAAATTGCCTAGACCACAAGCCCGAATGGGTTATCTATAATGAATATGTTCTTACGAGTCGGAATTTCATACGTACTGTGACAGATATACGTGGTGAATGGTTAGTTGATATAGCACCACATTACCATGATCTGTAG
Protein sequence

>Msa0501560

MMGTAMKRKASLFDVIDDSTAKMVKSNNGLIGNNRWNGKPYSPRYFEILEKRKTLPVWQQKDDFLKVFKDNQILILVGETGSGKTTQIPQFVLEAVDLETPDKHKKMTIACTQPRRVAAMSVSRRVAEEMDVSIGEEVGYSIRFEDCSSSRTVLKFLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKVKSYFFGARLMKVPGRLHPVEIFYAEEPQTDYLEAAIGTVVQIHTLEPAGDILVFLTGEEEIENACSQISNEISEVVANLGDKVGPVKVVPLYSTLPPAMQQKIFDPAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVVDPGLAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEMSFNNDLQPQTYPEILRSNLSNTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAMDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSICAMLAVPNCFIRPKEAQIAADEAKARFAHIDGDHLTLLNVYHAYKQNNEDASWCYDNFVNYRVLKSADNVRQQLVRIMARFNLKLCSTDFNSRHYYVNIRKAMLAGYFMQVAHLDQQRGHYLTVKDKQEVYLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYHDL*