Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408690 | XP_003591980.1 | 94.086 | 186 | 7 | 2 | 56 | 237 | 1 | 186 | 2.84e-122 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408690 | G7I9N4 | 94.086 | 186 | 7 | 2 | 56 | 237 | 1 | 186 | 1.36e-122 | 355 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0408690 | Msa0501660 | 0.816319 | 5.880744e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408690 | MtrunA17_Chr1g0200221 | 94.086 | 186 | 7 | 2 | 56 | 237 | 1 | 186 | 2.61e-126 | 355 |
| Msa0408690 | MtrunA17_Chr1g0200231 | 78.919 | 185 | 36 | 1 | 56 | 237 | 1 | 185 | 7.47e-104 | 298 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408690 | AT2G35810.2 | 66.854 | 178 | 52 | 3 | 59 | 233 | 22 | 195 | 6.63e-84 | 248 |
| Msa0408690 | AT2G35810.1 | 66.854 | 178 | 52 | 3 | 59 | 233 | 22 | 195 | 6.63e-84 | 248 |
| Msa0408690 | AT2G35820.1 | 65.363 | 179 | 56 | 2 | 59 | 235 | 8 | 182 | 5.62e-83 | 246 |
| Msa0408690 | AT2G35820.2 | 65.363 | 179 | 56 | 2 | 59 | 235 | 98 | 272 | 1.34e-81 | 246 |
| Msa0408690 | AT2G35830.2 | 67.416 | 178 | 52 | 3 | 59 | 233 | 8 | 182 | 2.30e-81 | 242 |
| Msa0408690 | AT2G35830.1 | 66.292 | 178 | 49 | 4 | 59 | 233 | 8 | 177 | 9.72e-77 | 230 |
Find 63 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGTTAAGCTTGAGAAATT+TGG | 0.260726 | 3_2:-48605901 | None:intergenic |
| ATATAATATCTGTCATTTAA+TGG | 0.272862 | 3_2:-48606245 | None:intergenic |
| TCATCGGACGGTGAGGGGTT+TGG | 0.318746 | 3_2:+48605176 | Msa0408690:CDS |
| GGTCCATTGGTGGTAATGTT+TGG | 0.421411 | 3_2:+48605736 | Msa0408690:CDS |
| GGTGGTAATGTTTGGTACCT+TGG | 0.440274 | 3_2:+48605744 | Msa0408690:CDS |
| GACCTGACCGTACTCTTTGA+AGG | 0.444255 | 3_2:-48605144 | None:intergenic |
| ACTCAGTGCCTTGGGTCCAT+TGG | 0.468229 | 3_2:+48605723 | Msa0408690:CDS |
| AGGTCAAGCTGAGCATCGTT+TGG | 0.468746 | 3_2:-48605200 | None:intergenic |
| CAGTGCCTTGGGTCCATTGG+TGG | 0.474720 | 3_2:+48605726 | Msa0408690:CDS |
| CAAGTGTGACTCAGTGCCTT+GGG | 0.479051 | 3_2:+48605715 | Msa0408690:CDS |
| CATAAAGCTCAAATTACTCA+TGG | 0.492947 | 3_2:-48606181 | None:intergenic |
| GCAAGTGTGACTCAGTGCCT+TGG | 0.493326 | 3_2:+48605714 | Msa0408690:CDS |
| TCTATTTAAGTCTGATACAA+TGG | 0.496626 | 3_2:+48605944 | Msa0408690:CDS |
| ACCTTAGCCAAGGAATTCCC+AGG | 0.496730 | 3_2:+48605219 | Msa0408690:CDS |
| AAATGAAATCAAGGATGACT+TGG | 0.500047 | 3_2:+48605794 | Msa0408690:CDS |
| GAGGCTTCATCGGACGGTGA+GGG | 0.503853 | 3_2:+48605170 | Msa0408690:CDS |
| ATGAAAACCTGGGAATTCCT+TGG | 0.506846 | 3_2:-48605226 | None:intergenic |
| TCATTTGCATCAACAATGGA+TGG | 0.507162 | 3_2:-48605777 | None:intergenic |
| ACCTGGGAATTCCTTGGCTA+AGG | 0.513339 | 3_2:-48605220 | None:intergenic |
| TGTTGATGCAAATGAAATCA+AGG | 0.515537 | 3_2:+48605785 | Msa0408690:CDS |
| GTCATTGAGGCTTCATCGGA+CGG | 0.541534 | 3_2:+48605164 | Msa0408690:CDS |
| ATTTGTCCATCACTACATAA+CGG | 0.543346 | 3_2:+48604957 | Msa0408690:CDS |
| AACCGTGGGACATGGCATGC+TGG | 0.544561 | 3_2:+48605918 | Msa0408690:CDS |
| GGTAGTAGGGTTTGAGCGGA+AGG | 0.548566 | 3_2:-48604995 | None:intergenic |
| GATTTCATTTGCATCAACAA+TGG | 0.549245 | 3_2:-48605781 | None:intergenic |
| AGGCTTCATCGGACGGTGAG+GGG | 0.550679 | 3_2:+48605171 | Msa0408690:CDS |
| GAAAACTTGAACATCCTCAA+TGG | 0.552500 | 3_2:-48605865 | None:intergenic |
| TCAGGTCATTGAGGCTTCAT+CGG | 0.558495 | 3_2:+48605160 | Msa0408690:CDS |
| TCAAGCTTAACCGTGGGACA+TGG | 0.558912 | 3_2:+48605910 | Msa0408690:CDS |
| ACTTGAACATCCTCAATGGC+AGG | 0.565229 | 3_2:-48605861 | None:intergenic |
| ACTTGCATGATGTGTGATGT+TGG | 0.565925 | 3_2:-48605697 | None:intergenic |
| GACCTTCAAAGAGTACGGTC+AGG | 0.570961 | 3_2:+48605142 | Msa0408690:CDS |
| TTATGTGCCTCCTGCCATTG+AGG | 0.572418 | 3_2:+48605851 | Msa0408690:CDS |
| TGAGGCTTCATCGGACGGTG+AGG | 0.573414 | 3_2:+48605169 | Msa0408690:CDS |
| GTCCTTCTTAAAGTTGTGTG+TGG | 0.574527 | 3_2:-48606138 | None:intergenic |
| TACCACACACAACTTTAAGA+AGG | 0.575142 | 3_2:+48606136 | Msa0408690:CDS |
| CCGTACTCTTTGAAGGTCGC+CGG | 0.579027 | 3_2:-48605137 | None:intergenic |
| AATGGAGAGTGTGAAGGTGA+AGG | 0.586847 | 3_2:+48605100 | Msa0408690:CDS |
| AAAATGCCGTTATGTAGTGA+TGG | 0.587866 | 3_2:-48604963 | None:intergenic |
| GAAGGCAATTGAAGCAACTC+CGG | 0.594897 | 3_2:+48605118 | Msa0408690:CDS |
| CACAACTTTAAGAAGGACAA+TGG | 0.594981 | 3_2:+48606143 | Msa0408690:CDS |
| GTACCAAACATTACCACCAA+TGG | 0.595761 | 3_2:-48605739 | None:intergenic |
| ACCACGTAATCTGATCGGAA+TGG | 0.602166 | 3_2:+48605082 | Msa0408690:CDS |
| GACCAGCATGCCATGTCCCA+CGG | 0.605299 | 3_2:-48605920 | None:intergenic |
| CCGGCGACCTTCAAAGAGTA+CGG | 0.605471 | 3_2:+48605137 | Msa0408690:CDS |
| AATGAAATCAAGGATGACTT+GGG | 0.606584 | 3_2:+48605795 | Msa0408690:CDS |
| TAATGTTTGGTACCTTGGAG+TGG | 0.611311 | 3_2:+48605749 | Msa0408690:CDS |
| CTTTAAGAAGGACAATGGAG+TGG | 0.614786 | 3_2:+48606148 | Msa0408690:CDS |
| AAATTTCTCAAGCTTAACCG+TGG | 0.618191 | 3_2:+48605903 | Msa0408690:CDS |
| CATTACCACCAATGGACCCA+AGG | 0.621913 | 3_2:-48605731 | None:intergenic |
| ATTGTATCAGACTTAAATAG+AGG | 0.622516 | 3_2:-48605942 | None:intergenic |
| GCTACACCACGTAATCTGAT+CGG | 0.635180 | 3_2:+48605077 | Msa0408690:CDS |
| TGGATGGCTTAGCCACTCCA+AGG | 0.635485 | 3_2:-48605761 | None:intergenic |
| GCTCAGCTTGACCTTAGCCA+AGG | 0.638940 | 3_2:+48605209 | Msa0408690:CDS |
| AATTTCTCAAGCTTAACCGT+GGG | 0.640376 | 3_2:+48605904 | Msa0408690:CDS |
| TCAAGGTAGTAGGGTTTGAG+CGG | 0.649250 | 3_2:-48604999 | None:intergenic |
| AGAGTACGGTCAGGTCATTG+AGG | 0.671075 | 3_2:+48605151 | Msa0408690:CDS |
| TCCATTCCGATCAGATTACG+TGG | 0.688560 | 3_2:-48605083 | None:intergenic |
| GTGATGTTGGAAAACTCAAG+TGG | 0.699314 | 3_2:-48605684 | None:intergenic |
| TGAACATCCTCAATGGCAGG+AGG | 0.702078 | 3_2:-48605858 | None:intergenic |
| GATCGGAATGGAGAGTGTGA+AGG | 0.706029 | 3_2:+48605094 | Msa0408690:CDS |
| ACAACAAGGCTTGATATACG+TGG | 0.738654 | 3_2:+48605028 | Msa0408690:CDS |
| ACAGTCGTGAAGTCACACAG+CGG | 0.840888 | 3_2:+48605822 | Msa0408690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATATCTGTCATTTAA+TGG | - | chr3_2:48606248-48606267 | None:intergenic | 15.0% |
| !!! | ATATAATATCTGTCATTTAA+TGG | - | chr3_2:48606248-48606267 | None:intergenic | 15.0% |
| !!! | TTTATTGTTTTATCAGATCT+TGG | + | chr3_2:48605483-48605502 | Msa0408690:intron | 20.0% |
| !! | ATTAATTCCATTAAGTTACA+GGG | - | chr3_2:48605623-48605642 | None:intergenic | 20.0% |
| !! | AATTAATTCCATTAAGTTAC+AGG | - | chr3_2:48605624-48605643 | None:intergenic | 20.0% |
| !!! | TTTATTGTTTTATCAGATCT+TGG | + | chr3_2:48605483-48605502 | Msa0408690:intron | 20.0% |
| !! | ATTAATTCCATTAAGTTACA+GGG | - | chr3_2:48605623-48605642 | None:intergenic | 20.0% |
| !! | AATTAATTCCATTAAGTTAC+AGG | - | chr3_2:48605624-48605643 | None:intergenic | 20.0% |
| !!! | GGAATTAATTTGTGTTTGTT+AGG | + | chr3_2:48605634-48605653 | Msa0408690:intron | 25.0% |
| ! | ATTGTATCAGACTTAAATAG+AGG | - | chr3_2:48605945-48605964 | None:intergenic | 25.0% |
| ! | TCTATTTAAGTCTGATACAA+TGG | + | chr3_2:48605944-48605963 | Msa0408690:CDS | 25.0% |
| !!! | GGAATTAATTTGTGTTTGTT+AGG | + | chr3_2:48605634-48605653 | Msa0408690:intron | 25.0% |
| ! | ATTGTATCAGACTTAAATAG+AGG | - | chr3_2:48605945-48605964 | None:intergenic | 25.0% |
| ! | TCTATTTAAGTCTGATACAA+TGG | + | chr3_2:48605944-48605963 | Msa0408690:CDS | 25.0% |
| ATTTGTCCATCACTACATAA+CGG | + | chr3_2:48604957-48604976 | Msa0408690:CDS | 30.0% | |
| !!! | ATATCAAGCCTTGTTGTTTT+TGG | - | chr3_2:48605025-48605044 | None:intergenic | 30.0% |
| ! | GCATCGTTGATAAAAATTGA+AGG | - | chr3_2:48605256-48605275 | None:intergenic | 30.0% |
| ! | TGTTGATAAGTGTGATTAAG+AGG | - | chr3_2:48605282-48605301 | None:intergenic | 30.0% |
| ATTGTTTAGATTCACAGAGA+TGG | + | chr3_2:48605459-48605478 | Msa0408690:intron | 30.0% | |
| TTCTATCAGCTTAATTTAGC+TGG | + | chr3_2:48605580-48605599 | Msa0408690:intron | 30.0% | |
| TCTATCAGCTTAATTTAGCT+GGG | + | chr3_2:48605581-48605600 | Msa0408690:intron | 30.0% | |
| GATTTCATTTGCATCAACAA+TGG | - | chr3_2:48605784-48605803 | None:intergenic | 30.0% | |
| TGTTGATGCAAATGAAATCA+AGG | + | chr3_2:48605785-48605804 | Msa0408690:CDS | 30.0% | |
| AAATGAAATCAAGGATGACT+TGG | + | chr3_2:48605794-48605813 | Msa0408690:CDS | 30.0% | |
| AATGAAATCAAGGATGACTT+GGG | + | chr3_2:48605795-48605814 | Msa0408690:CDS | 30.0% | |
| CATAAAGCTCAAATTACTCA+TGG | - | chr3_2:48606184-48606203 | None:intergenic | 30.0% | |
| ATTTGTCCATCACTACATAA+CGG | + | chr3_2:48604957-48604976 | Msa0408690:CDS | 30.0% | |
| !!! | ATATCAAGCCTTGTTGTTTT+TGG | - | chr3_2:48605025-48605044 | None:intergenic | 30.0% |
| ! | GCATCGTTGATAAAAATTGA+AGG | - | chr3_2:48605256-48605275 | None:intergenic | 30.0% |
| ! | TGTTGATAAGTGTGATTAAG+AGG | - | chr3_2:48605282-48605301 | None:intergenic | 30.0% |
| ATTGTTTAGATTCACAGAGA+TGG | + | chr3_2:48605459-48605478 | Msa0408690:intron | 30.0% | |
| TTCTATCAGCTTAATTTAGC+TGG | + | chr3_2:48605580-48605599 | Msa0408690:intron | 30.0% | |
| TCTATCAGCTTAATTTAGCT+GGG | + | chr3_2:48605581-48605600 | Msa0408690:intron | 30.0% | |
| GATTTCATTTGCATCAACAA+TGG | - | chr3_2:48605784-48605803 | None:intergenic | 30.0% | |
| TGTTGATGCAAATGAAATCA+AGG | + | chr3_2:48605785-48605804 | Msa0408690:CDS | 30.0% | |
| AAATGAAATCAAGGATGACT+TGG | + | chr3_2:48605794-48605813 | Msa0408690:CDS | 30.0% | |
| AATGAAATCAAGGATGACTT+GGG | + | chr3_2:48605795-48605814 | Msa0408690:CDS | 30.0% | |
| CATAAAGCTCAAATTACTCA+TGG | - | chr3_2:48606184-48606203 | None:intergenic | 30.0% | |
| AAAATGCCGTTATGTAGTGA+TGG | - | chr3_2:48604966-48604985 | None:intergenic | 35.0% | |
| ! | TACATAACGGCATTTTCTCT+TGG | + | chr3_2:48604970-48604989 | Msa0408690:CDS | 35.0% |
| !!! | TGTTTTTGGTCAAGGTAGTA+GGG | - | chr3_2:48605011-48605030 | None:intergenic | 35.0% |
| !!! | TTGTTTTTGGTCAAGGTAGT+AGG | - | chr3_2:48605012-48605031 | None:intergenic | 35.0% |
| TACCTTGACCAAAAACAACA+AGG | + | chr3_2:48605014-48605033 | Msa0408690:CDS | 35.0% | |
| TGAAGGTTGAATGAAAACCT+GGG | - | chr3_2:48605239-48605258 | None:intergenic | 35.0% | |
| TTGAAGGTTGAATGAAAACC+TGG | - | chr3_2:48605240-48605259 | None:intergenic | 35.0% | |
| GTAGTTGCAATCATCTTGAT+TGG | + | chr3_2:48605302-48605321 | Msa0408690:intron | 35.0% | |
| TGTAGTAATTTCTCGCTGTT+TGG | + | chr3_2:48605507-48605526 | Msa0408690:intron | 35.0% | |
| GTAGTAATTTCTCGCTGTTT+GGG | + | chr3_2:48605508-48605527 | Msa0408690:intron | 35.0% | |
| ! | GATTTTGAGCACTTTATCTC+AGG | - | chr3_2:48605544-48605563 | None:intergenic | 35.0% |
| TCATTTGCATCAACAATGGA+TGG | - | chr3_2:48605780-48605799 | None:intergenic | 35.0% | |
| GAAAACTTGAACATCCTCAA+TGG | - | chr3_2:48605868-48605887 | None:intergenic | 35.0% | |
| !! | TGAGGATGTTCAAGTTTTCA+AGG | + | chr3_2:48605869-48605888 | Msa0408690:CDS | 35.0% |
| !! | GTTCAAGTTTTCAAGGTTTC+AGG | + | chr3_2:48605876-48605895 | Msa0408690:CDS | 35.0% |
| ACGGTTAAGCTTGAGAAATT+TGG | - | chr3_2:48605904-48605923 | None:intergenic | 35.0% | |
| AAATTTCTCAAGCTTAACCG+TGG | + | chr3_2:48605903-48605922 | Msa0408690:CDS | 35.0% | |
| AATTTCTCAAGCTTAACCGT+GGG | + | chr3_2:48605904-48605923 | Msa0408690:CDS | 35.0% | |
| AATGTAACACTACACTGGAA+GGG | - | chr3_2:48606018-48606037 | None:intergenic | 35.0% | |
| TAATGTAACACTACACTGGA+AGG | - | chr3_2:48606019-48606038 | None:intergenic | 35.0% | |
| CATGTAATGTAACACTACAC+TGG | - | chr3_2:48606023-48606042 | None:intergenic | 35.0% | |
| ! | AGAGCATCACATATGAATTC+AGG | - | chr3_2:48606048-48606067 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTATTCTGTGTTC+AGG | + | chr3_2:48606103-48606122 | Msa0408690:intron | 35.0% |
| ! | TACCACACACAACTTTAAGA+AGG | + | chr3_2:48606136-48606155 | Msa0408690:CDS | 35.0% |
| ! | CACAACTTTAAGAAGGACAA+TGG | + | chr3_2:48606143-48606162 | Msa0408690:CDS | 35.0% |
| AAAATGCCGTTATGTAGTGA+TGG | - | chr3_2:48604966-48604985 | None:intergenic | 35.0% | |
| ! | TACATAACGGCATTTTCTCT+TGG | + | chr3_2:48604970-48604989 | Msa0408690:CDS | 35.0% |
| !!! | TGTTTTTGGTCAAGGTAGTA+GGG | - | chr3_2:48605011-48605030 | None:intergenic | 35.0% |
| !!! | TTGTTTTTGGTCAAGGTAGT+AGG | - | chr3_2:48605012-48605031 | None:intergenic | 35.0% |
| TACCTTGACCAAAAACAACA+AGG | + | chr3_2:48605014-48605033 | Msa0408690:CDS | 35.0% | |
| TGAAGGTTGAATGAAAACCT+GGG | - | chr3_2:48605239-48605258 | None:intergenic | 35.0% | |
| TTGAAGGTTGAATGAAAACC+TGG | - | chr3_2:48605240-48605259 | None:intergenic | 35.0% | |
| GTAGTTGCAATCATCTTGAT+TGG | + | chr3_2:48605302-48605321 | Msa0408690:intron | 35.0% | |
| TGTAGTAATTTCTCGCTGTT+TGG | + | chr3_2:48605507-48605526 | Msa0408690:intron | 35.0% | |
| GTAGTAATTTCTCGCTGTTT+GGG | + | chr3_2:48605508-48605527 | Msa0408690:intron | 35.0% | |
| ! | GATTTTGAGCACTTTATCTC+AGG | - | chr3_2:48605544-48605563 | None:intergenic | 35.0% |
| TCATTTGCATCAACAATGGA+TGG | - | chr3_2:48605780-48605799 | None:intergenic | 35.0% | |
| GAAAACTTGAACATCCTCAA+TGG | - | chr3_2:48605868-48605887 | None:intergenic | 35.0% | |
| !! | TGAGGATGTTCAAGTTTTCA+AGG | + | chr3_2:48605869-48605888 | Msa0408690:CDS | 35.0% |
| !! | GTTCAAGTTTTCAAGGTTTC+AGG | + | chr3_2:48605876-48605895 | Msa0408690:CDS | 35.0% |
| ACGGTTAAGCTTGAGAAATT+TGG | - | chr3_2:48605904-48605923 | None:intergenic | 35.0% | |
| AAATTTCTCAAGCTTAACCG+TGG | + | chr3_2:48605903-48605922 | Msa0408690:CDS | 35.0% | |
| AATTTCTCAAGCTTAACCGT+GGG | + | chr3_2:48605904-48605923 | Msa0408690:CDS | 35.0% | |
| AATGTAACACTACACTGGAA+GGG | - | chr3_2:48606018-48606037 | None:intergenic | 35.0% | |
| TAATGTAACACTACACTGGA+AGG | - | chr3_2:48606019-48606038 | None:intergenic | 35.0% | |
| CATGTAATGTAACACTACAC+TGG | - | chr3_2:48606023-48606042 | None:intergenic | 35.0% | |
| ! | AGAGCATCACATATGAATTC+AGG | - | chr3_2:48606048-48606067 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTATTCTGTGTTC+AGG | + | chr3_2:48606103-48606122 | Msa0408690:intron | 35.0% |
| ! | TACCACACACAACTTTAAGA+AGG | + | chr3_2:48606136-48606155 | Msa0408690:CDS | 35.0% |
| ! | CACAACTTTAAGAAGGACAA+TGG | + | chr3_2:48606143-48606162 | Msa0408690:CDS | 35.0% |
| !!! | AGCCTTGTTGTTTTTGGTCA+AGG | - | chr3_2:48605019-48605038 | None:intergenic | 40.0% |
| ACAACAAGGCTTGATATACG+TGG | + | chr3_2:48605028-48605047 | Msa0408690:CDS | 40.0% | |
| ATGAAAACCTGGGAATTCCT+TGG | - | chr3_2:48605229-48605248 | None:intergenic | 40.0% | |
| ! | GATTGGTTAACCGCTTGTAT+TGG | + | chr3_2:48605319-48605338 | Msa0408690:intron | 40.0% |
| AGCTATGCCCTGTAACTTAA+TGG | + | chr3_2:48605613-48605632 | Msa0408690:intron | 40.0% | |
| GTGATGTTGGAAAACTCAAG+TGG | - | chr3_2:48605687-48605706 | None:intergenic | 40.0% | |
| ACTTGCATGATGTGTGATGT+TGG | - | chr3_2:48605700-48605719 | None:intergenic | 40.0% | |
| GTACCAAACATTACCACCAA+TGG | - | chr3_2:48605742-48605761 | None:intergenic | 40.0% | |
| TAATGTTTGGTACCTTGGAG+TGG | + | chr3_2:48605749-48605768 | Msa0408690:CDS | 40.0% | |
| CAGTCGCTGTGATTAATGTA+TGG | + | chr3_2:48606083-48606102 | Msa0408690:intron | 40.0% | |
| GTCCTTCTTAAAGTTGTGTG+TGG | - | chr3_2:48606141-48606160 | None:intergenic | 40.0% | |
| ! | CTTTAAGAAGGACAATGGAG+TGG | + | chr3_2:48606148-48606167 | Msa0408690:CDS | 40.0% |
| !!! | AGCCTTGTTGTTTTTGGTCA+AGG | - | chr3_2:48605019-48605038 | None:intergenic | 40.0% |
| ACAACAAGGCTTGATATACG+TGG | + | chr3_2:48605028-48605047 | Msa0408690:CDS | 40.0% | |
| ATGAAAACCTGGGAATTCCT+TGG | - | chr3_2:48605229-48605248 | None:intergenic | 40.0% | |
| ! | GATTGGTTAACCGCTTGTAT+TGG | + | chr3_2:48605319-48605338 | Msa0408690:intron | 40.0% |
| AGCTATGCCCTGTAACTTAA+TGG | + | chr3_2:48605613-48605632 | Msa0408690:intron | 40.0% | |
| GTGATGTTGGAAAACTCAAG+TGG | - | chr3_2:48605687-48605706 | None:intergenic | 40.0% | |
| ACTTGCATGATGTGTGATGT+TGG | - | chr3_2:48605700-48605719 | None:intergenic | 40.0% | |
| GTACCAAACATTACCACCAA+TGG | - | chr3_2:48605742-48605761 | None:intergenic | 40.0% | |
| TAATGTTTGGTACCTTGGAG+TGG | + | chr3_2:48605749-48605768 | Msa0408690:CDS | 40.0% | |
| CAGTCGCTGTGATTAATGTA+TGG | + | chr3_2:48606083-48606102 | Msa0408690:intron | 40.0% | |
| GTCCTTCTTAAAGTTGTGTG+TGG | - | chr3_2:48606141-48606160 | None:intergenic | 40.0% | |
| ! | CTTTAAGAAGGACAATGGAG+TGG | + | chr3_2:48606148-48606167 | Msa0408690:CDS | 40.0% |
| TCAAGGTAGTAGGGTTTGAG+CGG | - | chr3_2:48605002-48605021 | None:intergenic | 45.0% | |
| GCTACACCACGTAATCTGAT+CGG | + | chr3_2:48605077-48605096 | Msa0408690:CDS | 45.0% | |
| ACCACGTAATCTGATCGGAA+TGG | + | chr3_2:48605082-48605101 | Msa0408690:CDS | 45.0% | |
| TCCATTCCGATCAGATTACG+TGG | - | chr3_2:48605086-48605105 | None:intergenic | 45.0% | |
| ! | AATGGAGAGTGTGAAGGTGA+AGG | + | chr3_2:48605100-48605119 | Msa0408690:CDS | 45.0% |
| GAAGGCAATTGAAGCAACTC+CGG | + | chr3_2:48605118-48605137 | Msa0408690:CDS | 45.0% | |
| TCAGGTCATTGAGGCTTCAT+CGG | + | chr3_2:48605160-48605179 | Msa0408690:CDS | 45.0% | |
| ! | GTTAACCGCTTGTATTGGTC+CGG | + | chr3_2:48605324-48605343 | Msa0408690:intron | 45.0% |
| AGGTTCCATGTCAATACCAC+CGG | - | chr3_2:48605346-48605365 | None:intergenic | 45.0% | |
| TTCGATTCTGCAGTCTGAGT+GGG | + | chr3_2:48605399-48605418 | Msa0408690:intron | 45.0% | |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | chr3_2:48605736-48605755 | Msa0408690:CDS | 45.0% |
| ! | GGTGGTAATGTTTGGTACCT+TGG | + | chr3_2:48605744-48605763 | Msa0408690:CDS | 45.0% |
| ACTTGAACATCCTCAATGGC+AGG | - | chr3_2:48605864-48605883 | None:intergenic | 45.0% | |
| TAACACTACACTGGAAGGGA+AGG | - | chr3_2:48606014-48606033 | None:intergenic | 45.0% | |
| TCAAGGTAGTAGGGTTTGAG+CGG | - | chr3_2:48605002-48605021 | None:intergenic | 45.0% | |
| GCTACACCACGTAATCTGAT+CGG | + | chr3_2:48605077-48605096 | Msa0408690:CDS | 45.0% | |
| ACCACGTAATCTGATCGGAA+TGG | + | chr3_2:48605082-48605101 | Msa0408690:CDS | 45.0% | |
| TCCATTCCGATCAGATTACG+TGG | - | chr3_2:48605086-48605105 | None:intergenic | 45.0% | |
| ! | AATGGAGAGTGTGAAGGTGA+AGG | + | chr3_2:48605100-48605119 | Msa0408690:CDS | 45.0% |
| GAAGGCAATTGAAGCAACTC+CGG | + | chr3_2:48605118-48605137 | Msa0408690:CDS | 45.0% | |
| TCAGGTCATTGAGGCTTCAT+CGG | + | chr3_2:48605160-48605179 | Msa0408690:CDS | 45.0% | |
| ! | GTTAACCGCTTGTATTGGTC+CGG | + | chr3_2:48605324-48605343 | Msa0408690:intron | 45.0% |
| AGGTTCCATGTCAATACCAC+CGG | - | chr3_2:48605346-48605365 | None:intergenic | 45.0% | |
| TTCGATTCTGCAGTCTGAGT+GGG | + | chr3_2:48605399-48605418 | Msa0408690:intron | 45.0% | |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | chr3_2:48605736-48605755 | Msa0408690:CDS | 45.0% |
| ! | GGTGGTAATGTTTGGTACCT+TGG | + | chr3_2:48605744-48605763 | Msa0408690:CDS | 45.0% |
| ACTTGAACATCCTCAATGGC+AGG | - | chr3_2:48605864-48605883 | None:intergenic | 45.0% | |
| TAACACTACACTGGAAGGGA+AGG | - | chr3_2:48606014-48606033 | None:intergenic | 45.0% | |
| ! | GATCGGAATGGAGAGTGTGA+AGG | + | chr3_2:48605094-48605113 | Msa0408690:CDS | 50.0% |
| ! | GACCTTCAAAGAGTACGGTC+AGG | + | chr3_2:48605142-48605161 | Msa0408690:CDS | 50.0% |
| GACCTGACCGTACTCTTTGA+AGG | - | chr3_2:48605147-48605166 | None:intergenic | 50.0% | |
| AGAGTACGGTCAGGTCATTG+AGG | + | chr3_2:48605151-48605170 | Msa0408690:CDS | 50.0% | |
| GTCATTGAGGCTTCATCGGA+CGG | + | chr3_2:48605164-48605183 | Msa0408690:CDS | 50.0% | |
| ! | AGGTCAAGCTGAGCATCGTT+TGG | - | chr3_2:48605203-48605222 | None:intergenic | 50.0% |
| ACCTTAGCCAAGGAATTCCC+AGG | + | chr3_2:48605219-48605238 | Msa0408690:CDS | 50.0% | |
| ACCTGGGAATTCCTTGGCTA+AGG | - | chr3_2:48605223-48605242 | None:intergenic | 50.0% | |
| TACCACCGGACCAATACAAG+CGG | - | chr3_2:48605332-48605351 | None:intergenic | 50.0% | |
| !! | TTGGTCCGGTGGTATTGACA+TGG | + | chr3_2:48605338-48605357 | Msa0408690:intron | 50.0% |
| AGTGAGTGTGCTCCTCTTCA+AGG | + | chr3_2:48605369-48605388 | Msa0408690:intron | 50.0% | |
| TCGAACGTGAGACCTTGAAG+AGG | - | chr3_2:48605384-48605403 | None:intergenic | 50.0% | |
| GTTCGATTCTGCAGTCTGAG+TGG | + | chr3_2:48605398-48605417 | Msa0408690:intron | 50.0% | |
| CAAGTGTGACTCAGTGCCTT+GGG | + | chr3_2:48605715-48605734 | Msa0408690:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | chr3_2:48605734-48605753 | None:intergenic | 50.0% | |
| ACAGTCGTGAAGTCACACAG+CGG | + | chr3_2:48605822-48605841 | Msa0408690:CDS | 50.0% | |
| TTATGTGCCTCCTGCCATTG+AGG | + | chr3_2:48605851-48605870 | Msa0408690:CDS | 50.0% | |
| TGAACATCCTCAATGGCAGG+AGG | - | chr3_2:48605861-48605880 | None:intergenic | 50.0% | |
| TCAAGCTTAACCGTGGGACA+TGG | + | chr3_2:48605910-48605929 | Msa0408690:CDS | 50.0% | |
| ! | GATCGGAATGGAGAGTGTGA+AGG | + | chr3_2:48605094-48605113 | Msa0408690:CDS | 50.0% |
| ! | GACCTTCAAAGAGTACGGTC+AGG | + | chr3_2:48605142-48605161 | Msa0408690:CDS | 50.0% |
| GACCTGACCGTACTCTTTGA+AGG | - | chr3_2:48605147-48605166 | None:intergenic | 50.0% | |
| AGAGTACGGTCAGGTCATTG+AGG | + | chr3_2:48605151-48605170 | Msa0408690:CDS | 50.0% | |
| GTCATTGAGGCTTCATCGGA+CGG | + | chr3_2:48605164-48605183 | Msa0408690:CDS | 50.0% | |
| ! | AGGTCAAGCTGAGCATCGTT+TGG | - | chr3_2:48605203-48605222 | None:intergenic | 50.0% |
| ACCTTAGCCAAGGAATTCCC+AGG | + | chr3_2:48605219-48605238 | Msa0408690:CDS | 50.0% | |
| ACCTGGGAATTCCTTGGCTA+AGG | - | chr3_2:48605223-48605242 | None:intergenic | 50.0% | |
| TACCACCGGACCAATACAAG+CGG | - | chr3_2:48605332-48605351 | None:intergenic | 50.0% | |
| !! | TTGGTCCGGTGGTATTGACA+TGG | + | chr3_2:48605338-48605357 | Msa0408690:intron | 50.0% |
| AGTGAGTGTGCTCCTCTTCA+AGG | + | chr3_2:48605369-48605388 | Msa0408690:intron | 50.0% | |
| TCGAACGTGAGACCTTGAAG+AGG | - | chr3_2:48605384-48605403 | None:intergenic | 50.0% | |
| GTTCGATTCTGCAGTCTGAG+TGG | + | chr3_2:48605398-48605417 | Msa0408690:intron | 50.0% | |
| CAAGTGTGACTCAGTGCCTT+GGG | + | chr3_2:48605715-48605734 | Msa0408690:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | chr3_2:48605734-48605753 | None:intergenic | 50.0% | |
| ACAGTCGTGAAGTCACACAG+CGG | + | chr3_2:48605822-48605841 | Msa0408690:CDS | 50.0% | |
| TTATGTGCCTCCTGCCATTG+AGG | + | chr3_2:48605851-48605870 | Msa0408690:CDS | 50.0% | |
| TGAACATCCTCAATGGCAGG+AGG | - | chr3_2:48605861-48605880 | None:intergenic | 50.0% | |
| TCAAGCTTAACCGTGGGACA+TGG | + | chr3_2:48605910-48605929 | Msa0408690:CDS | 50.0% | |
| GGTAGTAGGGTTTGAGCGGA+AGG | - | chr3_2:48604998-48605017 | None:intergenic | 55.0% | |
| ! | CCGTACTCTTTGAAGGTCGC+CGG | - | chr3_2:48605140-48605159 | None:intergenic | 55.0% |
| CCGGCGACCTTCAAAGAGTA+CGG | + | chr3_2:48605137-48605156 | Msa0408690:CDS | 55.0% | |
| GCTCAGCTTGACCTTAGCCA+AGG | + | chr3_2:48605209-48605228 | Msa0408690:CDS | 55.0% | |
| ! | AACCGCTTGTATTGGTCCGG+TGG | + | chr3_2:48605327-48605346 | Msa0408690:intron | 55.0% |
| ! | AGAGGAGCACACTCACTCTC+AGG | - | chr3_2:48605366-48605385 | None:intergenic | 55.0% |
| GCAAGTGTGACTCAGTGCCT+TGG | + | chr3_2:48605714-48605733 | Msa0408690:CDS | 55.0% | |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | chr3_2:48605723-48605742 | Msa0408690:CDS | 55.0% | |
| TGGATGGCTTAGCCACTCCA+AGG | - | chr3_2:48605764-48605783 | None:intergenic | 55.0% | |
| GGTAGTAGGGTTTGAGCGGA+AGG | - | chr3_2:48604998-48605017 | None:intergenic | 55.0% | |
| ! | CCGTACTCTTTGAAGGTCGC+CGG | - | chr3_2:48605140-48605159 | None:intergenic | 55.0% |
| CCGGCGACCTTCAAAGAGTA+CGG | + | chr3_2:48605137-48605156 | Msa0408690:CDS | 55.0% | |
| GCTCAGCTTGACCTTAGCCA+AGG | + | chr3_2:48605209-48605228 | Msa0408690:CDS | 55.0% | |
| ! | AACCGCTTGTATTGGTCCGG+TGG | + | chr3_2:48605327-48605346 | Msa0408690:intron | 55.0% |
| ! | AGAGGAGCACACTCACTCTC+AGG | - | chr3_2:48605366-48605385 | None:intergenic | 55.0% |
| GCAAGTGTGACTCAGTGCCT+TGG | + | chr3_2:48605714-48605733 | Msa0408690:CDS | 55.0% | |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | chr3_2:48605723-48605742 | Msa0408690:CDS | 55.0% | |
| TGGATGGCTTAGCCACTCCA+AGG | - | chr3_2:48605764-48605783 | None:intergenic | 55.0% | |
| TGAGGCTTCATCGGACGGTG+AGG | + | chr3_2:48605169-48605188 | Msa0408690:CDS | 60.0% | |
| GAGGCTTCATCGGACGGTGA+GGG | + | chr3_2:48605170-48605189 | Msa0408690:CDS | 60.0% | |
| AGGCTTCATCGGACGGTGAG+GGG | + | chr3_2:48605171-48605190 | Msa0408690:CDS | 60.0% | |
| TCATCGGACGGTGAGGGGTT+TGG | + | chr3_2:48605176-48605195 | Msa0408690:CDS | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | chr3_2:48605726-48605745 | Msa0408690:CDS | 60.0% | |
| AACCGTGGGACATGGCATGC+TGG | + | chr3_2:48605918-48605937 | Msa0408690:CDS | 60.0% | |
| GACCAGCATGCCATGTCCCA+CGG | - | chr3_2:48605923-48605942 | None:intergenic | 60.0% | |
| TGAGGCTTCATCGGACGGTG+AGG | + | chr3_2:48605169-48605188 | Msa0408690:CDS | 60.0% | |
| GAGGCTTCATCGGACGGTGA+GGG | + | chr3_2:48605170-48605189 | Msa0408690:CDS | 60.0% | |
| AGGCTTCATCGGACGGTGAG+GGG | + | chr3_2:48605171-48605190 | Msa0408690:CDS | 60.0% | |
| TCATCGGACGGTGAGGGGTT+TGG | + | chr3_2:48605176-48605195 | Msa0408690:CDS | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | chr3_2:48605726-48605745 | Msa0408690:CDS | 60.0% | |
| AACCGTGGGACATGGCATGC+TGG | + | chr3_2:48605918-48605937 | Msa0408690:CDS | 60.0% | |
| GACCAGCATGCCATGTCCCA+CGG | - | chr3_2:48605923-48605942 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 48604936 | 48606284 | 48604936 | ID=Msa0408690;Name=Msa0408690 |
| chr3_2 | mRNA | 48604936 | 48606284 | 48604936 | ID=Msa0408690-mRNA-1;Parent=Msa0408690;Name=Msa0408690-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|1|1|1|1|1|3|94|237 |
| chr3_2 | exon | 48604936 | 48605240 | 48604936 | ID=Msa0408690-mRNA-1:exon:9469;Parent=Msa0408690-mRNA-1 |
| chr3_2 | exon | 48605656 | 48605998 | 48605656 | ID=Msa0408690-mRNA-1:exon:9470;Parent=Msa0408690-mRNA-1 |
| chr3_2 | exon | 48606125 | 48606284 | 48606125 | ID=Msa0408690-mRNA-1:exon:9471;Parent=Msa0408690-mRNA-1 |
| chr3_2 | CDS | 48604936 | 48605240 | 48604936 | ID=Msa0408690-mRNA-1:cds;Parent=Msa0408690-mRNA-1 |
| chr3_2 | CDS | 48605656 | 48605998 | 48605656 | ID=Msa0408690-mRNA-1:cds;Parent=Msa0408690-mRNA-1 |
| chr3_2 | CDS | 48606125 | 48606190 | 48606125 | ID=Msa0408690-mRNA-1:cds;Parent=Msa0408690-mRNA-1 |
| chr3_2 | three_prime_UTR | 48606191 | 48606284 | 48606191 | ID=Msa0408690-mRNA-1:three_prime_utr;Parent=Msa0408690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
