Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501660 | XP_003591980.1 | 80.645 | 186 | 6 | 3 | 1 | 156 | 1 | 186 | 3.38e-98 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501660 | G7I9N4 | 80.645 | 186 | 6 | 3 | 1 | 156 | 1 | 186 | 1.61e-98 | 291 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0408690 | Msa0501660 | 0.816319 | 5.880744e-52 | -8.615850e-47 |
| Msa0361300 | Msa0501660 | 0.902073 | 1.406197e-78 | -8.615850e-47 |
| Msa0501660 | Msa0661870 | 0.800513 | 1.391433e-48 | -8.615850e-47 |
| Msa0501660 | Msa0902980 | 0.801443 | 8.984807e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501660 | MtrunA17_Chr1g0200221 | 80.645 | 186 | 6 | 3 | 1 | 156 | 1 | 186 | 3.11e-102 | 291 |
| Msa0501660 | MtrunA17_Chr1g0200231 | 67.568 | 185 | 31 | 2 | 1 | 156 | 1 | 185 | 3.20e-83 | 243 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501660 | AT2G35810.2 | 60.920 | 174 | 43 | 2 | 4 | 152 | 22 | 195 | 1.02e-71 | 214 |
| Msa0501660 | AT2G35810.1 | 60.920 | 174 | 43 | 2 | 4 | 152 | 22 | 195 | 1.02e-71 | 214 |
| Msa0501660 | AT2G35820.1 | 58.857 | 175 | 48 | 1 | 4 | 154 | 8 | 182 | 1.33e-71 | 214 |
| Msa0501660 | AT2G35820.2 | 58.857 | 175 | 48 | 1 | 4 | 154 | 98 | 272 | 4.15e-70 | 213 |
| Msa0501660 | AT2G35830.2 | 60.000 | 175 | 44 | 2 | 4 | 152 | 8 | 182 | 1.11e-69 | 209 |
| Msa0501660 | AT2G35830.1 | 58.857 | 175 | 41 | 3 | 4 | 152 | 8 | 177 | 7.14e-65 | 196 |
Find 62 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATAATATCTTGCATTTAA+TGG | 0.192051 | 3_4:-43011213 | None:intergenic |
| ACGGTTAAGCTTGAGAAATT+TGG | 0.260726 | 3_4:-43010869 | None:intergenic |
| AACTAATCATTGATCAATCT+TGG | 0.289862 | 3_4:-43011257 | None:intergenic |
| TCATCGGACGGTGAGGGGTT+TGG | 0.318746 | 3_4:+43010144 | Msa0501660:CDS |
| ACAGACACACTCTTGATGTT+TGG | 0.344903 | 3_4:-43011315 | None:intergenic |
| ACTAATCATTGATCAATCTT+GGG | 0.350050 | 3_4:-43011256 | None:intergenic |
| TGTGTGTAGGAGTAATTTAT+TGG | 0.379976 | 3_4:+43009884 | None:intergenic |
| TTTATGCTGCGCCTCTTGTT+TGG | 0.417140 | 3_4:-43011362 | None:intergenic |
| GACCTGACCGTACTCTTTGA+AGG | 0.444255 | 3_4:-43010112 | None:intergenic |
| ACTCAGTGCCTTGGGTCCAT+TGG | 0.468229 | 3_4:+43010691 | Msa0501660:CDS |
| AGGTCAAGCTGAGCATCGTT+TGG | 0.468746 | 3_4:-43010168 | None:intergenic |
| CAGTGCCTTGGGTCCATTGG+TGG | 0.474720 | 3_4:+43010694 | Msa0501660:CDS |
| CAAGTGTGACTCAGTGCCTT+GGG | 0.479051 | 3_4:+43010683 | Msa0501660:CDS |
| CATAAAGCTCAAATTACTCA+TGG | 0.492947 | 3_4:-43011149 | None:intergenic |
| GCAAGTGTGACTCAGTGCCT+TGG | 0.493326 | 3_4:+43010682 | Msa0501660:CDS |
| TCTATTTAAGTCTGATACAA+TGG | 0.496626 | 3_4:+43010912 | Msa0501660:CDS |
| ACCTTAGCCAAGGAATTCCC+AGG | 0.496730 | 3_4:+43010187 | Msa0501660:CDS |
| GAGGCTTCATCGGACGGTGA+GGG | 0.503853 | 3_4:+43010138 | Msa0501660:CDS |
| ATGAAAACCTGGGAATTCCT+TGG | 0.506846 | 3_4:-43010194 | None:intergenic |
| ACCTGGGAATTCCTTGGCTA+AGG | 0.513339 | 3_4:-43010188 | None:intergenic |
| CTACACCACGTAATCTGATC+GGG | 0.523760 | 3_4:+43010045 | Msa0501660:five_prime_UTR |
| CCACGTAATCTGATCGGGAA+TGG | 0.524517 | 3_4:+43010050 | Msa0501660:exon |
| GTCATTGAGGCTTCATCGGA+CGG | 0.541534 | 3_4:+43010132 | Msa0501660:CDS |
| ATTTGTCCATCACTACATAA+CGG | 0.543346 | 3_4:+43009923 | Msa0501660:five_prime_UTR |
| CTACCAAACATTACCACCAA+TGG | 0.543595 | 3_4:-43010707 | None:intergenic |
| AACCGTGGGACATGGCATGC+TGG | 0.544561 | 3_4:+43010886 | Msa0501660:CDS |
| GGTAGTAGGGTTTGAGCGGA+AGG | 0.548566 | 3_4:-43009961 | None:intergenic |
| AGGCTTCATCGGACGGTGAG+GGG | 0.550679 | 3_4:+43010139 | Msa0501660:CDS |
| GAAAACTTGAACATCCTCAA+TGG | 0.552500 | 3_4:-43010833 | None:intergenic |
| TCAGGTCATTGAGGCTTCAT+CGG | 0.558495 | 3_4:+43010128 | Msa0501660:CDS |
| TCAAGCTTAACCGTGGGACA+TGG | 0.558912 | 3_4:+43010878 | Msa0501660:CDS |
| CTAATCATTGATCAATCTTG+GGG | 0.561772 | 3_4:-43011255 | None:intergenic |
| ACTTGAACATCCTCAATGGC+AGG | 0.565229 | 3_4:-43010829 | None:intergenic |
| ACTTGCATGATGTGTGATGT+TGG | 0.565925 | 3_4:-43010665 | None:intergenic |
| GACCTTCAAAGAGTACGGTC+AGG | 0.570961 | 3_4:+43010110 | Msa0501660:CDS |
| TTATGTGCCTCCTGCCATTG+AGG | 0.572418 | 3_4:+43010819 | Msa0501660:CDS |
| TGAGGCTTCATCGGACGGTG+AGG | 0.573414 | 3_4:+43010137 | Msa0501660:CDS |
| GTCCTTCTTAAAGTTGTGTG+TGG | 0.574527 | 3_4:-43011106 | None:intergenic |
| TACCACACACAACTTTAAGA+AGG | 0.575142 | 3_4:+43011104 | Msa0501660:CDS |
| CCGTACTCTTTGAAGGTCGC+CGG | 0.579027 | 3_4:-43010105 | None:intergenic |
| GCTACACCACGTAATCTGAT+CGG | 0.584042 | 3_4:+43010044 | Msa0501660:five_prime_UTR |
| AATGGAGAGTGTGAAGGTGA+AGG | 0.586847 | 3_4:+43010068 | Msa0501660:exon |
| AAAATGCCGTTATGTAGTGA+TGG | 0.587866 | 3_4:-43009929 | None:intergenic |
| GAAGGCAATTGAAGCAACTC+CGG | 0.594897 | 3_4:+43010086 | Msa0501660:CDS |
| CACAACTTTAAGAAGGACAA+TGG | 0.594981 | 3_4:+43011111 | Msa0501660:CDS |
| GACCAGCATGCCATGTCCCA+CGG | 0.605299 | 3_4:-43010888 | None:intergenic |
| CCGGCGACCTTCAAAGAGTA+CGG | 0.605471 | 3_4:+43010105 | Msa0501660:CDS |
| TGCATTATGTACCAAACAAG+AGG | 0.606614 | 3_4:+43011351 | Msa0501660:three_prime_UTR |
| CTTTAAGAAGGACAATGGAG+TGG | 0.614786 | 3_4:+43011116 | Msa0501660:CDS |
| AAATTTCTCAAGCTTAACCG+TGG | 0.618191 | 3_4:+43010871 | Msa0501660:CDS |
| CATTACCACCAATGGACCCA+AGG | 0.621913 | 3_4:-43010699 | None:intergenic |
| ATTGTATCAGACTTAAATAG+AGG | 0.622516 | 3_4:-43010910 | None:intergenic |
| GCTCAGCTTGACCTTAGCCA+AGG | 0.638940 | 3_4:+43010177 | Msa0501660:CDS |
| CAAAGGTAGTAGGGTTTGAG+CGG | 0.640327 | 3_4:-43009965 | None:intergenic |
| AATTTCTCAAGCTTAACCGT+GGG | 0.640376 | 3_4:+43010872 | Msa0501660:CDS |
| CCATTCCCGATCAGATTACG+TGG | 0.645608 | 3_4:-43010050 | None:intergenic |
| AGAGTACGGTCAGGTCATTG+AGG | 0.671075 | 3_4:+43010119 | Msa0501660:CDS |
| ATCGGGAATGGAGAGTGTGA+AGG | 0.695912 | 3_4:+43010062 | Msa0501660:exon |
| GTGATGTTGGAAAACTCAAG+TGG | 0.699314 | 3_4:-43010652 | None:intergenic |
| TGAACATCCTCAATGGCAGG+AGG | 0.702078 | 3_4:-43010826 | None:intergenic |
| ACAACAAGACTTGATATACG+TGG | 0.723929 | 3_4:+43009995 | Msa0501660:five_prime_UTR |
| ACAGTCGTGAAGTCACACAG+CGG | 0.840888 | 3_4:+43010790 | Msa0501660:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATATCTTGCATTTAA+TGG | - | chr3_4:43011216-43011235 | None:intergenic | 15.0% |
| !! | ATATAATATCTTGCATTTAA+TGG | - | chr3_4:43011216-43011235 | None:intergenic | 15.0% |
| !!! | TTTATTGTTTTATCAGATCT+TGG | + | chr3_4:43010451-43010470 | Msa0501660:intron | 20.0% |
| !!! | TTTATTGTTTTATCAGATCT+TGG | + | chr3_4:43010451-43010470 | Msa0501660:intron | 20.0% |
| !!! | ATATCAAGTCTTGTTGTTTT+TGG | - | chr3_4:43009992-43010011 | None:intergenic | 25.0% |
| ! | ATTAATTCCATTCAGTTACA+GGG | - | chr3_4:43010591-43010610 | None:intergenic | 25.0% |
| ! | AATTAATTCCATTCAGTTAC+AGG | - | chr3_4:43010592-43010611 | None:intergenic | 25.0% |
| !!! | GGAATTAATTTGTGTTTGTT+AGG | + | chr3_4:43010602-43010621 | Msa0501660:intron | 25.0% |
| ! | ATTGTATCAGACTTAAATAG+AGG | - | chr3_4:43010913-43010932 | None:intergenic | 25.0% |
| ! | TCTATTTAAGTCTGATACAA+TGG | + | chr3_4:43010912-43010931 | Msa0501660:CDS | 25.0% |
| ! | ACTAATCATTGATCAATCTT+GGG | - | chr3_4:43011259-43011278 | None:intergenic | 25.0% |
| ! | AACTAATCATTGATCAATCT+TGG | - | chr3_4:43011260-43011279 | None:intergenic | 25.0% |
| !!! | ATATCAAGTCTTGTTGTTTT+TGG | - | chr3_4:43009992-43010011 | None:intergenic | 25.0% |
| ! | ATTAATTCCATTCAGTTACA+GGG | - | chr3_4:43010591-43010610 | None:intergenic | 25.0% |
| ! | AATTAATTCCATTCAGTTAC+AGG | - | chr3_4:43010592-43010611 | None:intergenic | 25.0% |
| !!! | GGAATTAATTTGTGTTTGTT+AGG | + | chr3_4:43010602-43010621 | Msa0501660:intron | 25.0% |
| ! | ATTGTATCAGACTTAAATAG+AGG | - | chr3_4:43010913-43010932 | None:intergenic | 25.0% |
| ! | TCTATTTAAGTCTGATACAA+TGG | + | chr3_4:43010912-43010931 | Msa0501660:CDS | 25.0% |
| ! | ACTAATCATTGATCAATCTT+GGG | - | chr3_4:43011259-43011278 | None:intergenic | 25.0% |
| ! | AACTAATCATTGATCAATCT+TGG | - | chr3_4:43011260-43011279 | None:intergenic | 25.0% |
| ATTTGTCCATCACTACATAA+CGG | + | chr3_4:43009923-43009942 | Msa0501660:five_prime_UTR | 30.0% | |
| ! | GCATCGTTGATAAAAATTGA+AGG | - | chr3_4:43010224-43010243 | None:intergenic | 30.0% |
| ! | TGTTGATAAGTGTGATTAAG+AGG | - | chr3_4:43010250-43010269 | None:intergenic | 30.0% |
| ATTGTTTAGATTCACAGAGA+TGG | + | chr3_4:43010427-43010446 | Msa0501660:intron | 30.0% | |
| TTCTATCAGCTTAATTTAGC+TGG | + | chr3_4:43010548-43010567 | Msa0501660:intron | 30.0% | |
| TCTATCAGCTTAATTTAGCT+GGG | + | chr3_4:43010549-43010568 | Msa0501660:intron | 30.0% | |
| GATTTCATTTGCATCAACAA+TGG | - | chr3_4:43010752-43010771 | None:intergenic | 30.0% | |
| TGTTGATGCAAATGAAATCA+AGG | + | chr3_4:43010753-43010772 | Msa0501660:intron | 30.0% | |
| AAATGAAATCAAGGATGACT+TGG | + | chr3_4:43010762-43010781 | Msa0501660:intron | 30.0% | |
| AATGAAATCAAGGATGACTT+GGG | + | chr3_4:43010763-43010782 | Msa0501660:intron | 30.0% | |
| CATAAAGCTCAAATTACTCA+TGG | - | chr3_4:43011152-43011171 | None:intergenic | 30.0% | |
| CTAATCATTGATCAATCTTG+GGG | - | chr3_4:43011258-43011277 | None:intergenic | 30.0% | |
| ATTTGTCCATCACTACATAA+CGG | + | chr3_4:43009923-43009942 | Msa0501660:five_prime_UTR | 30.0% | |
| ! | GCATCGTTGATAAAAATTGA+AGG | - | chr3_4:43010224-43010243 | None:intergenic | 30.0% |
| ! | TGTTGATAAGTGTGATTAAG+AGG | - | chr3_4:43010250-43010269 | None:intergenic | 30.0% |
| ATTGTTTAGATTCACAGAGA+TGG | + | chr3_4:43010427-43010446 | Msa0501660:intron | 30.0% | |
| TTCTATCAGCTTAATTTAGC+TGG | + | chr3_4:43010548-43010567 | Msa0501660:intron | 30.0% | |
| TCTATCAGCTTAATTTAGCT+GGG | + | chr3_4:43010549-43010568 | Msa0501660:intron | 30.0% | |
| GATTTCATTTGCATCAACAA+TGG | - | chr3_4:43010752-43010771 | None:intergenic | 30.0% | |
| TGTTGATGCAAATGAAATCA+AGG | + | chr3_4:43010753-43010772 | Msa0501660:intron | 30.0% | |
| AAATGAAATCAAGGATGACT+TGG | + | chr3_4:43010762-43010781 | Msa0501660:intron | 30.0% | |
| AATGAAATCAAGGATGACTT+GGG | + | chr3_4:43010763-43010782 | Msa0501660:intron | 30.0% | |
| CATAAAGCTCAAATTACTCA+TGG | - | chr3_4:43011152-43011171 | None:intergenic | 30.0% | |
| CTAATCATTGATCAATCTTG+GGG | - | chr3_4:43011258-43011277 | None:intergenic | 30.0% | |
| AAAATGCCGTTATGTAGTGA+TGG | - | chr3_4:43009932-43009951 | None:intergenic | 35.0% | |
| ! | TACATAACGGCATTTTCTCT+TGG | + | chr3_4:43009936-43009955 | Msa0501660:five_prime_UTR | 35.0% |
| !!! | GTTTTTGGTCAAAGGTAGTA+GGG | - | chr3_4:43009977-43009996 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTCAAAGGTAGT+AGG | - | chr3_4:43009978-43009997 | None:intergenic | 35.0% |
| !!! | GTCTTGTTGTTTTTGGTCAA+AGG | - | chr3_4:43009985-43010004 | None:intergenic | 35.0% |
| ACAACAAGACTTGATATACG+TGG | + | chr3_4:43009995-43010014 | Msa0501660:five_prime_UTR | 35.0% | |
| TGAAGGTTGAATGAAAACCT+GGG | - | chr3_4:43010207-43010226 | None:intergenic | 35.0% | |
| TTGAAGGTTGAATGAAAACC+TGG | - | chr3_4:43010208-43010227 | None:intergenic | 35.0% | |
| GTAGTTGCAATCATCTTGAT+TGG | + | chr3_4:43010270-43010289 | Msa0501660:intron | 35.0% | |
| TGTAGTAATTTCTCGCTGTT+TGG | + | chr3_4:43010475-43010494 | Msa0501660:intron | 35.0% | |
| GTAGTAATTTCTCGCTGTTT+GGG | + | chr3_4:43010476-43010495 | Msa0501660:intron | 35.0% | |
| ! | GATTTTGAGCACTTTATCTC+AGG | - | chr3_4:43010512-43010531 | None:intergenic | 35.0% |
| TCATTTGCATCAACAATGGA+TGG | - | chr3_4:43010748-43010767 | None:intergenic | 35.0% | |
| GAAAACTTGAACATCCTCAA+TGG | - | chr3_4:43010836-43010855 | None:intergenic | 35.0% | |
| !! | TGAGGATGTTCAAGTTTTCA+AGG | + | chr3_4:43010837-43010856 | Msa0501660:CDS | 35.0% |
| !! | GTTCAAGTTTTCAAGGTTTC+AGG | + | chr3_4:43010844-43010863 | Msa0501660:CDS | 35.0% |
| ACGGTTAAGCTTGAGAAATT+TGG | - | chr3_4:43010872-43010891 | None:intergenic | 35.0% | |
| AAATTTCTCAAGCTTAACCG+TGG | + | chr3_4:43010871-43010890 | Msa0501660:CDS | 35.0% | |
| AATTTCTCAAGCTTAACCGT+GGG | + | chr3_4:43010872-43010891 | Msa0501660:CDS | 35.0% | |
| AATGTAACACTACACTGGAA+GGG | - | chr3_4:43010986-43011005 | None:intergenic | 35.0% | |
| TAATGTAACACTACACTGGA+AGG | - | chr3_4:43010987-43011006 | None:intergenic | 35.0% | |
| CATGTAATGTAACACTACAC+TGG | - | chr3_4:43010991-43011010 | None:intergenic | 35.0% | |
| ! | AGAGCATCACATATGAATTC+AGG | - | chr3_4:43011016-43011035 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTATTCTGTGTTC+AGG | + | chr3_4:43011071-43011090 | Msa0501660:intron | 35.0% |
| ! | TACCACACACAACTTTAAGA+AGG | + | chr3_4:43011104-43011123 | Msa0501660:CDS | 35.0% |
| ! | CACAACTTTAAGAAGGACAA+TGG | + | chr3_4:43011111-43011130 | Msa0501660:CDS | 35.0% |
| TGCATTATGTACCAAACAAG+AGG | + | chr3_4:43011351-43011370 | Msa0501660:three_prime_UTR | 35.0% | |
| AAAATGCCGTTATGTAGTGA+TGG | - | chr3_4:43009932-43009951 | None:intergenic | 35.0% | |
| ! | TACATAACGGCATTTTCTCT+TGG | + | chr3_4:43009936-43009955 | Msa0501660:five_prime_UTR | 35.0% |
| !!! | GTTTTTGGTCAAAGGTAGTA+GGG | - | chr3_4:43009977-43009996 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTCAAAGGTAGT+AGG | - | chr3_4:43009978-43009997 | None:intergenic | 35.0% |
| !!! | GTCTTGTTGTTTTTGGTCAA+AGG | - | chr3_4:43009985-43010004 | None:intergenic | 35.0% |
| ACAACAAGACTTGATATACG+TGG | + | chr3_4:43009995-43010014 | Msa0501660:five_prime_UTR | 35.0% | |
| TGAAGGTTGAATGAAAACCT+GGG | - | chr3_4:43010207-43010226 | None:intergenic | 35.0% | |
| TTGAAGGTTGAATGAAAACC+TGG | - | chr3_4:43010208-43010227 | None:intergenic | 35.0% | |
| GTAGTTGCAATCATCTTGAT+TGG | + | chr3_4:43010270-43010289 | Msa0501660:intron | 35.0% | |
| TGTAGTAATTTCTCGCTGTT+TGG | + | chr3_4:43010475-43010494 | Msa0501660:intron | 35.0% | |
| GTAGTAATTTCTCGCTGTTT+GGG | + | chr3_4:43010476-43010495 | Msa0501660:intron | 35.0% | |
| ! | GATTTTGAGCACTTTATCTC+AGG | - | chr3_4:43010512-43010531 | None:intergenic | 35.0% |
| TCATTTGCATCAACAATGGA+TGG | - | chr3_4:43010748-43010767 | None:intergenic | 35.0% | |
| GAAAACTTGAACATCCTCAA+TGG | - | chr3_4:43010836-43010855 | None:intergenic | 35.0% | |
| !! | TGAGGATGTTCAAGTTTTCA+AGG | + | chr3_4:43010837-43010856 | Msa0501660:CDS | 35.0% |
| !! | GTTCAAGTTTTCAAGGTTTC+AGG | + | chr3_4:43010844-43010863 | Msa0501660:CDS | 35.0% |
| ACGGTTAAGCTTGAGAAATT+TGG | - | chr3_4:43010872-43010891 | None:intergenic | 35.0% | |
| AAATTTCTCAAGCTTAACCG+TGG | + | chr3_4:43010871-43010890 | Msa0501660:CDS | 35.0% | |
| AATTTCTCAAGCTTAACCGT+GGG | + | chr3_4:43010872-43010891 | Msa0501660:CDS | 35.0% | |
| AATGTAACACTACACTGGAA+GGG | - | chr3_4:43010986-43011005 | None:intergenic | 35.0% | |
| TAATGTAACACTACACTGGA+AGG | - | chr3_4:43010987-43011006 | None:intergenic | 35.0% | |
| CATGTAATGTAACACTACAC+TGG | - | chr3_4:43010991-43011010 | None:intergenic | 35.0% | |
| ! | AGAGCATCACATATGAATTC+AGG | - | chr3_4:43011016-43011035 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTATTCTGTGTTC+AGG | + | chr3_4:43011071-43011090 | Msa0501660:intron | 35.0% |
| ! | TACCACACACAACTTTAAGA+AGG | + | chr3_4:43011104-43011123 | Msa0501660:CDS | 35.0% |
| ! | CACAACTTTAAGAAGGACAA+TGG | + | chr3_4:43011111-43011130 | Msa0501660:CDS | 35.0% |
| TGCATTATGTACCAAACAAG+AGG | + | chr3_4:43011351-43011370 | Msa0501660:three_prime_UTR | 35.0% | |
| ATGAAAACCTGGGAATTCCT+TGG | - | chr3_4:43010197-43010216 | None:intergenic | 40.0% | |
| ! | GATTGGTTAACCGCTTGTAT+TGG | + | chr3_4:43010287-43010306 | Msa0501660:intron | 40.0% |
| GTGATGTTGGAAAACTCAAG+TGG | - | chr3_4:43010655-43010674 | None:intergenic | 40.0% | |
| ACTTGCATGATGTGTGATGT+TGG | - | chr3_4:43010668-43010687 | None:intergenic | 40.0% | |
| CTACCAAACATTACCACCAA+TGG | - | chr3_4:43010710-43010729 | None:intergenic | 40.0% | |
| ! | CATTGGTGGTAATGTTTGGT+AGG | + | chr3_4:43010708-43010727 | Msa0501660:intron | 40.0% |
| ! | TAATGTTTGGTAGGTTGGAG+TGG | + | chr3_4:43010717-43010736 | Msa0501660:intron | 40.0% |
| CAGTCGCTGTGATTAATGTA+TGG | + | chr3_4:43011051-43011070 | Msa0501660:intron | 40.0% | |
| GTCCTTCTTAAAGTTGTGTG+TGG | - | chr3_4:43011109-43011128 | None:intergenic | 40.0% | |
| ! | CTTTAAGAAGGACAATGGAG+TGG | + | chr3_4:43011116-43011135 | Msa0501660:CDS | 40.0% |
| ACAGACACACTCTTGATGTT+TGG | - | chr3_4:43011318-43011337 | None:intergenic | 40.0% | |
| ATGAAAACCTGGGAATTCCT+TGG | - | chr3_4:43010197-43010216 | None:intergenic | 40.0% | |
| ! | GATTGGTTAACCGCTTGTAT+TGG | + | chr3_4:43010287-43010306 | Msa0501660:intron | 40.0% |
| GTGATGTTGGAAAACTCAAG+TGG | - | chr3_4:43010655-43010674 | None:intergenic | 40.0% | |
| ACTTGCATGATGTGTGATGT+TGG | - | chr3_4:43010668-43010687 | None:intergenic | 40.0% | |
| CTACCAAACATTACCACCAA+TGG | - | chr3_4:43010710-43010729 | None:intergenic | 40.0% | |
| ! | CATTGGTGGTAATGTTTGGT+AGG | + | chr3_4:43010708-43010727 | Msa0501660:intron | 40.0% |
| ! | TAATGTTTGGTAGGTTGGAG+TGG | + | chr3_4:43010717-43010736 | Msa0501660:intron | 40.0% |
| CAGTCGCTGTGATTAATGTA+TGG | + | chr3_4:43011051-43011070 | Msa0501660:intron | 40.0% | |
| GTCCTTCTTAAAGTTGTGTG+TGG | - | chr3_4:43011109-43011128 | None:intergenic | 40.0% | |
| ! | CTTTAAGAAGGACAATGGAG+TGG | + | chr3_4:43011116-43011135 | Msa0501660:CDS | 40.0% |
| ACAGACACACTCTTGATGTT+TGG | - | chr3_4:43011318-43011337 | None:intergenic | 40.0% | |
| CAAAGGTAGTAGGGTTTGAG+CGG | - | chr3_4:43009968-43009987 | None:intergenic | 45.0% | |
| GCTACACCACGTAATCTGAT+CGG | + | chr3_4:43010044-43010063 | Msa0501660:five_prime_UTR | 45.0% | |
| CTACACCACGTAATCTGATC+GGG | + | chr3_4:43010045-43010064 | Msa0501660:five_prime_UTR | 45.0% | |
| ! | AATGGAGAGTGTGAAGGTGA+AGG | + | chr3_4:43010068-43010087 | Msa0501660:exon | 45.0% |
| GAAGGCAATTGAAGCAACTC+CGG | + | chr3_4:43010086-43010105 | Msa0501660:CDS | 45.0% | |
| TCAGGTCATTGAGGCTTCAT+CGG | + | chr3_4:43010128-43010147 | Msa0501660:CDS | 45.0% | |
| ! | GTTAACCGCTTGTATTGGTC+CGG | + | chr3_4:43010292-43010311 | Msa0501660:intron | 45.0% |
| TTCGATTCTGCAGTCTGAGT+GGG | + | chr3_4:43010367-43010386 | Msa0501660:intron | 45.0% | |
| AGCTATGCCCTGTAACTGAA+TGG | + | chr3_4:43010581-43010600 | Msa0501660:intron | 45.0% | |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | chr3_4:43010704-43010723 | Msa0501660:intron | 45.0% |
| ! | GGTGGTAATGTTTGGTAGGT+TGG | + | chr3_4:43010712-43010731 | Msa0501660:intron | 45.0% |
| ACTTGAACATCCTCAATGGC+AGG | - | chr3_4:43010832-43010851 | None:intergenic | 45.0% | |
| TAACACTACACTGGAAGGGA+AGG | - | chr3_4:43010982-43011001 | None:intergenic | 45.0% | |
| TTTATGCTGCGCCTCTTGTT+TGG | - | chr3_4:43011365-43011384 | None:intergenic | 45.0% | |
| CAAAGGTAGTAGGGTTTGAG+CGG | - | chr3_4:43009968-43009987 | None:intergenic | 45.0% | |
| GCTACACCACGTAATCTGAT+CGG | + | chr3_4:43010044-43010063 | Msa0501660:five_prime_UTR | 45.0% | |
| CTACACCACGTAATCTGATC+GGG | + | chr3_4:43010045-43010064 | Msa0501660:five_prime_UTR | 45.0% | |
| ! | AATGGAGAGTGTGAAGGTGA+AGG | + | chr3_4:43010068-43010087 | Msa0501660:exon | 45.0% |
| GAAGGCAATTGAAGCAACTC+CGG | + | chr3_4:43010086-43010105 | Msa0501660:CDS | 45.0% | |
| TCAGGTCATTGAGGCTTCAT+CGG | + | chr3_4:43010128-43010147 | Msa0501660:CDS | 45.0% | |
| ! | GTTAACCGCTTGTATTGGTC+CGG | + | chr3_4:43010292-43010311 | Msa0501660:intron | 45.0% |
| TTCGATTCTGCAGTCTGAGT+GGG | + | chr3_4:43010367-43010386 | Msa0501660:intron | 45.0% | |
| AGCTATGCCCTGTAACTGAA+TGG | + | chr3_4:43010581-43010600 | Msa0501660:intron | 45.0% | |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | chr3_4:43010704-43010723 | Msa0501660:intron | 45.0% |
| ! | GGTGGTAATGTTTGGTAGGT+TGG | + | chr3_4:43010712-43010731 | Msa0501660:intron | 45.0% |
| ACTTGAACATCCTCAATGGC+AGG | - | chr3_4:43010832-43010851 | None:intergenic | 45.0% | |
| TAACACTACACTGGAAGGGA+AGG | - | chr3_4:43010982-43011001 | None:intergenic | 45.0% | |
| TTTATGCTGCGCCTCTTGTT+TGG | - | chr3_4:43011365-43011384 | None:intergenic | 45.0% | |
| CCATTCCCGATCAGATTACG+TGG | - | chr3_4:43010053-43010072 | None:intergenic | 50.0% | |
| CCACGTAATCTGATCGGGAA+TGG | + | chr3_4:43010050-43010069 | Msa0501660:exon | 50.0% | |
| ! | ATCGGGAATGGAGAGTGTGA+AGG | + | chr3_4:43010062-43010081 | Msa0501660:exon | 50.0% |
| ! | GACCTTCAAAGAGTACGGTC+AGG | + | chr3_4:43010110-43010129 | Msa0501660:CDS | 50.0% |
| GACCTGACCGTACTCTTTGA+AGG | - | chr3_4:43010115-43010134 | None:intergenic | 50.0% | |
| AGAGTACGGTCAGGTCATTG+AGG | + | chr3_4:43010119-43010138 | Msa0501660:CDS | 50.0% | |
| GTCATTGAGGCTTCATCGGA+CGG | + | chr3_4:43010132-43010151 | Msa0501660:CDS | 50.0% | |
| ! | AGGTCAAGCTGAGCATCGTT+TGG | - | chr3_4:43010171-43010190 | None:intergenic | 50.0% |
| ACCTTAGCCAAGGAATTCCC+AGG | + | chr3_4:43010187-43010206 | Msa0501660:CDS | 50.0% | |
| ACCTGGGAATTCCTTGGCTA+AGG | - | chr3_4:43010191-43010210 | None:intergenic | 50.0% | |
| TACCACCGGACCAATACAAG+CGG | - | chr3_4:43010300-43010319 | None:intergenic | 50.0% | |
| AGGTTCCACGTCAATACCAC+CGG | - | chr3_4:43010314-43010333 | None:intergenic | 50.0% | |
| AGTGAGTGTGCTCCTCTTCA+AGG | + | chr3_4:43010337-43010356 | Msa0501660:intron | 50.0% | |
| TCGAACGTGAGACCTTGAAG+AGG | - | chr3_4:43010352-43010371 | None:intergenic | 50.0% | |
| GTTCGATTCTGCAGTCTGAG+TGG | + | chr3_4:43010366-43010385 | Msa0501660:intron | 50.0% | |
| CAAGTGTGACTCAGTGCCTT+GGG | + | chr3_4:43010683-43010702 | Msa0501660:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | chr3_4:43010702-43010721 | None:intergenic | 50.0% | |
| ACAGTCGTGAAGTCACACAG+CGG | + | chr3_4:43010790-43010809 | Msa0501660:intron | 50.0% | |
| TTATGTGCCTCCTGCCATTG+AGG | + | chr3_4:43010819-43010838 | Msa0501660:CDS | 50.0% | |
| TGAACATCCTCAATGGCAGG+AGG | - | chr3_4:43010829-43010848 | None:intergenic | 50.0% | |
| TCAAGCTTAACCGTGGGACA+TGG | + | chr3_4:43010878-43010897 | Msa0501660:CDS | 50.0% | |
| CCATTCCCGATCAGATTACG+TGG | - | chr3_4:43010053-43010072 | None:intergenic | 50.0% | |
| CCACGTAATCTGATCGGGAA+TGG | + | chr3_4:43010050-43010069 | Msa0501660:exon | 50.0% | |
| ! | ATCGGGAATGGAGAGTGTGA+AGG | + | chr3_4:43010062-43010081 | Msa0501660:exon | 50.0% |
| ! | GACCTTCAAAGAGTACGGTC+AGG | + | chr3_4:43010110-43010129 | Msa0501660:CDS | 50.0% |
| GACCTGACCGTACTCTTTGA+AGG | - | chr3_4:43010115-43010134 | None:intergenic | 50.0% | |
| AGAGTACGGTCAGGTCATTG+AGG | + | chr3_4:43010119-43010138 | Msa0501660:CDS | 50.0% | |
| GTCATTGAGGCTTCATCGGA+CGG | + | chr3_4:43010132-43010151 | Msa0501660:CDS | 50.0% | |
| ! | AGGTCAAGCTGAGCATCGTT+TGG | - | chr3_4:43010171-43010190 | None:intergenic | 50.0% |
| ACCTTAGCCAAGGAATTCCC+AGG | + | chr3_4:43010187-43010206 | Msa0501660:CDS | 50.0% | |
| ACCTGGGAATTCCTTGGCTA+AGG | - | chr3_4:43010191-43010210 | None:intergenic | 50.0% | |
| TACCACCGGACCAATACAAG+CGG | - | chr3_4:43010300-43010319 | None:intergenic | 50.0% | |
| AGGTTCCACGTCAATACCAC+CGG | - | chr3_4:43010314-43010333 | None:intergenic | 50.0% | |
| AGTGAGTGTGCTCCTCTTCA+AGG | + | chr3_4:43010337-43010356 | Msa0501660:intron | 50.0% | |
| TCGAACGTGAGACCTTGAAG+AGG | - | chr3_4:43010352-43010371 | None:intergenic | 50.0% | |
| GTTCGATTCTGCAGTCTGAG+TGG | + | chr3_4:43010366-43010385 | Msa0501660:intron | 50.0% | |
| CAAGTGTGACTCAGTGCCTT+GGG | + | chr3_4:43010683-43010702 | Msa0501660:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | chr3_4:43010702-43010721 | None:intergenic | 50.0% | |
| ACAGTCGTGAAGTCACACAG+CGG | + | chr3_4:43010790-43010809 | Msa0501660:intron | 50.0% | |
| TTATGTGCCTCCTGCCATTG+AGG | + | chr3_4:43010819-43010838 | Msa0501660:CDS | 50.0% | |
| TGAACATCCTCAATGGCAGG+AGG | - | chr3_4:43010829-43010848 | None:intergenic | 50.0% | |
| TCAAGCTTAACCGTGGGACA+TGG | + | chr3_4:43010878-43010897 | Msa0501660:CDS | 50.0% | |
| GGTAGTAGGGTTTGAGCGGA+AGG | - | chr3_4:43009964-43009983 | None:intergenic | 55.0% | |
| ! | CCGTACTCTTTGAAGGTCGC+CGG | - | chr3_4:43010108-43010127 | None:intergenic | 55.0% |
| CCGGCGACCTTCAAAGAGTA+CGG | + | chr3_4:43010105-43010124 | Msa0501660:CDS | 55.0% | |
| GCTCAGCTTGACCTTAGCCA+AGG | + | chr3_4:43010177-43010196 | Msa0501660:CDS | 55.0% | |
| ! | AACCGCTTGTATTGGTCCGG+TGG | + | chr3_4:43010295-43010314 | Msa0501660:intron | 55.0% |
| !! | TTGGTCCGGTGGTATTGACG+TGG | + | chr3_4:43010306-43010325 | Msa0501660:intron | 55.0% |
| ! | AGAGGAGCACACTCACTCTC+AGG | - | chr3_4:43010334-43010353 | None:intergenic | 55.0% |
| GCAAGTGTGACTCAGTGCCT+TGG | + | chr3_4:43010682-43010701 | Msa0501660:CDS | 55.0% | |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | chr3_4:43010691-43010710 | Msa0501660:CDS | 55.0% | |
| GGTAGTAGGGTTTGAGCGGA+AGG | - | chr3_4:43009964-43009983 | None:intergenic | 55.0% | |
| ! | CCGTACTCTTTGAAGGTCGC+CGG | - | chr3_4:43010108-43010127 | None:intergenic | 55.0% |
| CCGGCGACCTTCAAAGAGTA+CGG | + | chr3_4:43010105-43010124 | Msa0501660:CDS | 55.0% | |
| GCTCAGCTTGACCTTAGCCA+AGG | + | chr3_4:43010177-43010196 | Msa0501660:CDS | 55.0% | |
| ! | AACCGCTTGTATTGGTCCGG+TGG | + | chr3_4:43010295-43010314 | Msa0501660:intron | 55.0% |
| !! | TTGGTCCGGTGGTATTGACG+TGG | + | chr3_4:43010306-43010325 | Msa0501660:intron | 55.0% |
| ! | AGAGGAGCACACTCACTCTC+AGG | - | chr3_4:43010334-43010353 | None:intergenic | 55.0% |
| GCAAGTGTGACTCAGTGCCT+TGG | + | chr3_4:43010682-43010701 | Msa0501660:CDS | 55.0% | |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | chr3_4:43010691-43010710 | Msa0501660:CDS | 55.0% | |
| TGAGGCTTCATCGGACGGTG+AGG | + | chr3_4:43010137-43010156 | Msa0501660:CDS | 60.0% | |
| GAGGCTTCATCGGACGGTGA+GGG | + | chr3_4:43010138-43010157 | Msa0501660:CDS | 60.0% | |
| AGGCTTCATCGGACGGTGAG+GGG | + | chr3_4:43010139-43010158 | Msa0501660:CDS | 60.0% | |
| TCATCGGACGGTGAGGGGTT+TGG | + | chr3_4:43010144-43010163 | Msa0501660:CDS | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | chr3_4:43010694-43010713 | Msa0501660:CDS | 60.0% | |
| AACCGTGGGACATGGCATGC+TGG | + | chr3_4:43010886-43010905 | Msa0501660:CDS | 60.0% | |
| GACCAGCATGCCATGTCCCA+CGG | - | chr3_4:43010891-43010910 | None:intergenic | 60.0% | |
| TGAGGCTTCATCGGACGGTG+AGG | + | chr3_4:43010137-43010156 | Msa0501660:CDS | 60.0% | |
| GAGGCTTCATCGGACGGTGA+GGG | + | chr3_4:43010138-43010157 | Msa0501660:CDS | 60.0% | |
| AGGCTTCATCGGACGGTGAG+GGG | + | chr3_4:43010139-43010158 | Msa0501660:CDS | 60.0% | |
| TCATCGGACGGTGAGGGGTT+TGG | + | chr3_4:43010144-43010163 | Msa0501660:CDS | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | chr3_4:43010694-43010713 | Msa0501660:CDS | 60.0% | |
| AACCGTGGGACATGGCATGC+TGG | + | chr3_4:43010886-43010905 | Msa0501660:CDS | 60.0% | |
| GACCAGCATGCCATGTCCCA+CGG | - | chr3_4:43010891-43010910 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 43009888 | 43011399 | 43009888 | ID=Msa0501660;Name=Msa0501660 |
| chr3_4 | mRNA | 43009888 | 43011399 | 43009888 | ID=Msa0501660-mRNA-1;Parent=Msa0501660;Name=Msa0501660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=181|0.66|0.5|1|1|1|4|241|156 |
| chr3_4 | exon | 43009888 | 43010208 | 43009888 | ID=Msa0501660-mRNA-1:exon:9120;Parent=Msa0501660-mRNA-1 |
| chr3_4 | exon | 43010624 | 43010715 | 43010624 | ID=Msa0501660-mRNA-1:exon:9121;Parent=Msa0501660-mRNA-1 |
| chr3_4 | exon | 43010794 | 43010966 | 43010794 | ID=Msa0501660-mRNA-1:exon:9122;Parent=Msa0501660-mRNA-1 |
| chr3_4 | exon | 43011093 | 43011399 | 43011093 | ID=Msa0501660-mRNA-1:exon:9123;Parent=Msa0501660-mRNA-1 |
| chr3_4 | five_prime_UTR | 43009888 | 43010068 | 43009888 | ID=Msa0501660-mRNA-1:five_prime_utr;Parent=Msa0501660-mRNA-1 |
| chr3_4 | CDS | 43010069 | 43010208 | 43010069 | ID=Msa0501660-mRNA-1:cds;Parent=Msa0501660-mRNA-1 |
| chr3_4 | CDS | 43010624 | 43010715 | 43010624 | ID=Msa0501660-mRNA-1:cds;Parent=Msa0501660-mRNA-1 |
| chr3_4 | CDS | 43010794 | 43010966 | 43010794 | ID=Msa0501660-mRNA-1:cds;Parent=Msa0501660-mRNA-1 |
| chr3_4 | CDS | 43011093 | 43011158 | 43011093 | ID=Msa0501660-mRNA-1:cds;Parent=Msa0501660-mRNA-1 |
| chr3_4 | three_prime_UTR | 43011159 | 43011399 | 43011159 | ID=Msa0501660-mRNA-1:three_prime_utr;Parent=Msa0501660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
