AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0408750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408750 MtrunA17_Chr3g0099501 97.897 428 9 0 1 428 1 428 0.0 872
Msa0408750 MtrunA17_Chr5g0444591 79.909 438 78 5 1 428 2 439 0.0 708
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408750 AT4G26850.1 68.694 444 121 7 1 428 1 442 0.0 609
Msa0408750 AT5G55120.1 73.858 394 97 2 1 391 2 392 0.0 606

Find 173 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATTCAGGCATATTATT+TGG 0.159533 3_2:-48741276 Msa0408750:intron
TTTCACACCACCATTTAATT+TGG 0.178763 3_2:+48741211 None:intergenic
CAATTCTTCAACACCCTTTC+GGG 0.186074 3_2:+48743392 None:intergenic
AACTTTAGTGAAATTGAATT+TGG 0.227080 3_2:+48741990 None:intergenic
TAATTGCTCTTTGGAGCTTT+AGG 0.240830 3_2:-48740031 Msa0408750:three_prime_UTR
TCTGATCTCCTCTTTCTTGC+TGG 0.250262 3_2:-48743226 Msa0408750:five_prime_UTR
GGAACGCCCTGTGGCTTTCT+TGG 0.262977 3_2:-48742712 Msa0408750:CDS
TTGTAACCCAATCGGAAATA+TGG 0.278287 3_2:+48741468 None:intergenic
TTGTTGGTGGTAGGTGATTC+CGG 0.284474 3_2:-48742112 Msa0408750:intron
AAGAAGATTGCCAAATTAAA+TGG 0.286112 3_2:-48741221 Msa0408750:CDS
CGGTGAAAAGAGAGGAAATT+TGG 0.288450 3_2:+48743475 None:intergenic
GAGAAGCAAGATTAGGAATT+GGG 0.290066 3_2:+48743513 None:intergenic
CAGGTTAGTCCTATCGAATA+TGG 0.292372 3_2:-48741591 Msa0408750:CDS
AGAGAAGCAAGATTAGGAAT+TGG 0.297710 3_2:+48743512 None:intergenic
AGAAGTGCGTGCTGAGCTTC+TGG 0.300654 3_2:-48740538 Msa0408750:CDS
ACAATTCTTCAACACCCTTT+CGG 0.308886 3_2:+48743391 None:intergenic
TTCTTGGACTCGATTATTCT+TGG 0.312041 3_2:-48742696 Msa0408750:CDS
CGATTGGGTTACAACAGCTT+GGG 0.321121 3_2:-48741459 Msa0408750:CDS
TTGATGTAATAATTGCTCTT+TGG 0.326679 3_2:-48740040 Msa0408750:three_prime_UTR
GCTTGAATATTATTGCTTCA+TGG 0.329553 3_2:-48740077 Msa0408750:three_prime_UTR
CCTTCGCCGCACGGCGGGCG+TGG 0.335690 3_2:-48743277 Msa0408750:five_prime_UTR
TATTAATCATCTTCACTTCC+AGG 0.342444 3_2:-48741424 Msa0408750:intron
GATGAGGATGCTCCTGTTAA+TGG 0.346887 3_2:-48742953 Msa0408750:CDS
AATTCGCGTGATCGATCCTT+TGG 0.351058 3_2:+48741529 None:intergenic
CATCACAGCTAGCCTCAAAT+TGG 0.351329 3_2:+48741947 None:intergenic
GAGGAAATTTGGAAGCTTTG+TGG 0.358520 3_2:+48743486 None:intergenic
AGAAGATGTTGAGTATTAAG+AGG 0.359887 3_2:-48743006 Msa0408750:exon
CTCAAGAGTTGTTGTATTCA+AGG 0.361415 3_2:-48742914 Msa0408750:intron
CCACGCCCGCCGTGCGGCGA+AGG 0.365660 3_2:+48743277 None:intergenic
TTAGTAGAAGCCTTCTCAAT+TGG 0.368160 3_2:+48741242 None:intergenic
ATTATATTATACAATTCAAA+AGG 0.383292 3_2:+48739991 None:intergenic
TCAACATCAATTGGCGCGTC+GGG 0.383384 3_2:+48741907 None:intergenic
TGTTGGTGGTAGGTGATTCC+GGG 0.384951 3_2:-48742111 Msa0408750:intron
AAATTCAATTTCACTAAAGT+TGG 0.387313 3_2:-48741988 Msa0408750:CDS
CGTCAGAGGTCTTGTCTTTG+AGG 0.387565 3_2:-48741165 Msa0408750:CDS
TTCCTTTGTATGGTTACAAA+AGG 0.388385 3_2:-48742770 Msa0408750:CDS
TTTCGTCCACAACCATTAAC+AGG 0.391724 3_2:+48742941 None:intergenic
TTGGCGCGTCGGGAAAGAAT+TGG 0.399612 3_2:+48741917 None:intergenic
AAAATGTTCTACACACGAAA+AGG 0.401197 3_2:+48743431 None:intergenic
GGAGAATTCTCAACATCAAT+TGG 0.401473 3_2:+48741898 None:intergenic
CCGTCGTTGTTCACGACGTA+AGG 0.402172 3_2:-48743320 Msa0408750:five_prime_UTR
CAAGAACTTGATAGAATAAG+TGG 0.403210 3_2:-48740135 Msa0408750:three_prime_UTR
GAGGCGAAGCTTCCTTTGTA+TGG 0.404392 3_2:-48742780 Msa0408750:CDS
TTGAATTTGGTTTCATCAAA+GGG 0.405392 3_2:+48742003 None:intergenic
ATCCGATAAACATACATTGA+TGG 0.407834 3_2:+48741864 None:intergenic
CTCCTCTTTCTTGCTGGTGG+TGG 0.411563 3_2:-48743220 Msa0408750:five_prime_UTR
TGGAGAAGAGAAGCAAGATT+AGG 0.413489 3_2:+48743506 None:intergenic
TTCTCAATTGTTTCTCAAGT+GGG 0.417319 3_2:-48743100 Msa0408750:five_prime_UTR
GTCAGAGGTCTTGTCTTTGA+GGG 0.421271 3_2:-48741164 Msa0408750:CDS
AGAGATCCTATTCCAATTTG+AGG 0.422058 3_2:-48741959 Msa0408750:CDS
GGAAATCCATATTTCCGATT+GGG 0.424274 3_2:-48741474 Msa0408750:CDS
ATTCGCGTGATCGATCCTTT+GGG 0.424300 3_2:+48741530 None:intergenic
ATTGAATTTGGTTTCATCAA+AGG 0.434141 3_2:+48742002 None:intergenic
GCTGGAGAACCTTGTCAACT+TGG 0.436753 3_2:+48742025 None:intergenic
TGGCGCGTCGGGAAAGAATT+GGG 0.439522 3_2:+48741918 None:intergenic
CAATTTGAGGCTAGCTGTGA+TGG 0.440428 3_2:-48741946 Msa0408750:CDS
AAATGTTCTACACACGAAAA+GGG 0.443894 3_2:+48743432 None:intergenic
TCCTTTGTATGGTTACAAAA+GGG 0.444951 3_2:-48742769 Msa0408750:CDS
TTTGGTGGAGGATGTATATG+AGG 0.449359 3_2:+48743596 None:intergenic
CGGCTATTCAAAGGGTTTCA+CGG 0.453222 3_2:-48743357 Msa0408750:five_prime_UTR
CCGATTGGGTTACAACAGCT+TGG 0.455392 3_2:-48741460 Msa0408750:CDS
CTCAACATCAATTGGCGCGT+CGG 0.456530 3_2:+48741906 None:intergenic
GATTCAGACCTTGGTTTCAC+AGG 0.457731 3_2:+48742242 None:intergenic
CTTTGAGGGTGGTCATGCAC+TGG 0.459659 3_2:-48741150 Msa0408750:CDS
TTTCTCAATTGTTTCTCAAG+TGG 0.460672 3_2:-48743101 Msa0408750:five_prime_UTR
CACGCCCGCCGTGCGGCGAA+GGG 0.461053 3_2:+48743278 None:intergenic
TAGGTGATTCCGGGTGAGTA+TGG 0.461202 3_2:-48742102 Msa0408750:CDS
AGCTAGCCTCAAATTGGAAT+AGG 0.461916 3_2:+48741953 None:intergenic
GTTGTGTTGAAGGCAGATAC+AGG 0.468738 3_2:+48741100 None:intergenic
GGCAAGAAGCTCCCGAGCAT+TGG 0.469589 3_2:+48740431 None:intergenic
CCCGCCGTGCGGCGAAGGGT+TGG 0.469590 3_2:+48743282 None:intergenic
ATTCAGTTGGTCTCTTCTTG+AGG 0.471371 3_2:+48742049 None:intergenic
AAGGTATGTTGTTGTGTTGA+AGG 0.473926 3_2:+48741090 None:intergenic
CCACTGATTTCCCACACAGC+TGG 0.476673 3_2:+48740501 None:intergenic
CTTCACATGGCAGCTGAAGC+AGG 0.477098 3_2:-48741495 Msa0408750:CDS
GGTTGTTTCGAATTATCAAA+AGG 0.477503 3_2:-48742975 Msa0408750:CDS
CACCACCACCAGCAAGAAAG+AGG 0.478145 3_2:+48743218 None:intergenic
TTGGGGTGTGAGAGAAGAGA+AGG 0.478623 3_2:+48743531 None:intergenic
CTTGTCTCCCATTGCATGCA+AGG 0.487931 3_2:-48742733 Msa0408750:CDS
AATCATCACGGCTATTCAAA+GGG 0.488573 3_2:-48743365 Msa0408750:five_prime_UTR
GGGCGTTCCTTGCATGCAAT+GGG 0.491885 3_2:+48742726 None:intergenic
CGTGGTGCTCTTCCTTCTGA+AGG 0.493925 3_2:-48743259 Msa0408750:five_prime_UTR
TCAGAAATAAGAACATTGTA+AGG 0.494156 3_2:+48741071 None:intergenic
TGCGAACCAGCCACCATAGC+AGG 0.498039 3_2:+48740279 None:intergenic
CAATTGTTTCTCAAGTGGGT+TGG 0.506793 3_2:-48743096 Msa0408750:five_prime_UTR
CCAACCCTTCGCCGCACGGC+GGG 0.506992 3_2:-48743282 Msa0408750:five_prime_UTR
ATTTGGTTTCATCAAAGGGC+TGG 0.510494 3_2:+48742007 None:intergenic
ACATTGATGGCAACAAAGCT+TGG 0.511324 3_2:+48741877 None:intergenic
AGGGCGTTCCTTGCATGCAA+TGG 0.513889 3_2:+48742725 None:intergenic
GATGCTCCTGTTAATGGTTG+TGG 0.514716 3_2:-48742947 Msa0408750:CDS
CTCAAAGACAAGACCTCTGA+CGG 0.516269 3_2:+48741166 None:intergenic
AGGCATCTGAAGCCAATGCT+CGG 0.516305 3_2:-48740443 Msa0408750:CDS
AGGTTAGTCCTATCGAATAT+GGG 0.517158 3_2:-48741590 Msa0408750:CDS
ACTAAGCCTGCTATGGTGGC+TGG 0.519817 3_2:-48740285 Msa0408750:CDS
CCAAGCTGTTGTAACCCAAT+CGG 0.521064 3_2:+48741460 None:intergenic
GAAGCCTTCTCAATTGGAAA+AGG 0.522050 3_2:+48741248 None:intergenic
AAATCATCACGGCTATTCAA+AGG 0.522135 3_2:-48743366 Msa0408750:five_prime_UTR
AGGAAATCCATATTTCCGAT+TGG 0.522692 3_2:-48741475 Msa0408750:CDS
AATTTGAGGCTAGCTGTGAT+GGG 0.523574 3_2:-48741945 Msa0408750:CDS
TTCGAATTATCAAAAGGATG+AGG 0.523778 3_2:-48742969 Msa0408750:CDS
ATGTTCTTATTTCTGACTGC+GGG 0.524095 3_2:-48741064 Msa0408750:CDS
ATCGAGTCCAAGAAAGCCAC+AGG 0.524617 3_2:+48742705 None:intergenic
GGACTCGATTATTCTTGGAC+AGG 0.524632 3_2:-48742691 Msa0408750:intron
GGCATCTGAAGCCAATGCTC+GGG 0.525201 3_2:-48740442 Msa0408750:CDS
GAAGATGTTGAGTATTAAGA+GGG 0.535650 3_2:-48743005 Msa0408750:exon
GAGTATTAAGAGGGTTCCTA+CGG 0.535658 3_2:-48742996 Msa0408750:CDS
GATTGGGTTACAACAGCTTG+GGG 0.540251 3_2:-48741458 Msa0408750:CDS
GCAAGAAAGAGGAGATCAGA+AGG 0.541103 3_2:+48743229 None:intergenic
GATCTCCTCTTTCTTGCTGG+TGG 0.541502 3_2:-48743223 Msa0408750:five_prime_UTR
TGCTCGGGAGCTTCTTGCCG+AGG 0.545020 3_2:-48740427 Msa0408750:CDS
TACGCAGAGAAACAAGCTCT+TGG 0.546314 3_2:-48740561 Msa0408750:CDS
TTATATTATACAATTCAAAA+GGG 0.547943 3_2:+48739992 None:intergenic
TGGGGTGTGAGAGAAGAGAA+GGG 0.548403 3_2:+48743532 None:intergenic
CTCAAACACTAAGCCTGCTA+TGG 0.552740 3_2:-48740292 Msa0408750:CDS
GTGGACACATGGTGTTAAAG+AGG 0.553568 3_2:-48740482 Msa0408750:CDS
AGAAGCAAGATTAGGAATTG+GGG 0.560146 3_2:+48743514 None:intergenic
GCAGATACAGGCTTCAGAAA+CGG 0.560153 3_2:+48741112 None:intergenic
AAACACTAAGCCTGCTATGG+TGG 0.560336 3_2:-48740289 Msa0408750:CDS
TTGTCAACTTGGAATTCAGT+TGG 0.561917 3_2:+48742036 None:intergenic
TTACAAAAGGGGTGAGGCAA+AGG 0.563078 3_2:-48742757 Msa0408750:CDS
GGCTTGTATTTGATATCTAG+TGG 0.566165 3_2:-48740114 Msa0408750:three_prime_UTR
CCTTTGTATGGTTACAAAAG+GGG 0.566646 3_2:-48742768 Msa0408750:CDS
CTTACGTCGTGAACAACGAC+GGG 0.567342 3_2:+48743321 None:intergenic
TATTATACAATTCAAAAGGG+TGG 0.572306 3_2:+48739995 None:intergenic
GAAGTGAAGATGATTAATAG+TGG 0.576187 3_2:+48741428 None:intergenic
CGTCGTTGTTCACGACGTAA+GGG 0.576674 3_2:-48743319 Msa0408750:five_prime_UTR
ACCAACCCTTCGCCGCACGG+CGG 0.578774 3_2:-48743283 Msa0408750:five_prime_UTR
TTCGCGTGATCGATCCTTTG+GGG 0.586652 3_2:+48741531 None:intergenic
CGCAAGTTAATCCAGCTGTG+TGG 0.587802 3_2:-48740512 Msa0408750:CDS
GTTCGACCCAGTTCAAGAAA+CGG 0.587959 3_2:+48743455 None:intergenic
TTCTTATTTCTGACTGCGGG+AGG 0.588058 3_2:-48741061 Msa0408750:CDS
TCAACTTCCTCTAGACATTG+AGG 0.588708 3_2:+48740324 None:intergenic
TTCATTGCTCAGCTGAACGA+GGG 0.589336 3_2:-48742078 Msa0408750:CDS
CATGGTGTTAAAGAGGAAGA+AGG 0.590993 3_2:-48740475 Msa0408750:CDS
AGGTTTCTCTCTCTAAAGAG+AGG 0.595509 3_2:-48740407 Msa0408750:CDS
CTCTTTAGAGAGAGAAACCT+CGG 0.595723 3_2:+48740410 None:intergenic
GAGACCAACCCTTCGCCGCA+CGG 0.598550 3_2:-48743286 Msa0408750:five_prime_UTR
GCAAGTTAATCCAGCTGTGT+GGG 0.599673 3_2:-48740511 Msa0408750:CDS
GGCAAACACTCGAAAATTCG+AGG 0.606853 3_2:+48741552 None:intergenic
GTATGGTTACAAAAGGGGTG+AGG 0.607885 3_2:-48742763 Msa0408750:CDS
GGTGCTCTTCCTTCTGAAGG+TGG 0.616301 3_2:-48743256 Msa0408750:five_prime_UTR
AGAGGTCTTGTCTTTGAGGG+TGG 0.617352 3_2:-48741161 Msa0408750:CDS
TTTCATTGCTCAGCTGAACG+AGG 0.617448 3_2:-48742079 Msa0408750:CDS
TCAAGAAACGGTGAAAAGAG+AGG 0.620171 3_2:+48743467 None:intergenic
CCAGCTGTGTGGGAAATCAG+TGG 0.621970 3_2:-48740501 Msa0408750:CDS
AATGTTCTACACACGAAAAG+GGG 0.623546 3_2:+48743433 None:intergenic
GAAGGGCTACCACCTTCAGA+AGG 0.625898 3_2:+48743247 None:intergenic
TCAAAGACAAGACCTCTGAC+GGG 0.628405 3_2:+48741167 None:intergenic
AACTGAATTCCAAGTTGACA+AGG 0.629423 3_2:-48742034 Msa0408750:CDS
TTGTTTGTTACTGAAGAACA+AGG 0.630835 3_2:+48740250 None:intergenic
GAGGAAGAAGGACTTTGATG+AGG 0.633378 3_2:-48740463 Msa0408750:CDS
AGAGCACCACGCCCGCCGTG+CGG 0.633566 3_2:+48743271 None:intergenic
TTGTTGAACTATCCCGTCAG+AGG 0.636208 3_2:-48741179 Msa0408750:CDS
AAGATTGCCAAATTAAATGG+TGG 0.637560 3_2:-48741218 Msa0408750:CDS
AATGTTCTTATTTCTGACTG+CGG 0.643366 3_2:-48741065 Msa0408750:CDS
TGATAATTCGAAACAACCGT+AGG 0.645029 3_2:+48742980 None:intergenic
CACAGGCAGTAACATCGTAA+CGG 0.645185 3_2:+48742259 None:intergenic
CCTTACGTCGTGAACAACGA+CGG 0.647374 3_2:+48743320 None:intergenic
GGGGTGTTGAAAACCCGAAA+GGG 0.651297 3_2:-48743405 Msa0408750:five_prime_UTR
AAGAATTGTAGAAATCATCA+CGG 0.652856 3_2:-48743377 Msa0408750:five_prime_UTR
GCAATGAAACCATACTCACC+CGG 0.655955 3_2:+48742093 None:intergenic
TGCATGCAAGGAACGCCCTG+TGG 0.656628 3_2:-48742721 Msa0408750:CDS
TGTTACTGCCTGTGAAACCA+AGG 0.656701 3_2:-48742250 Msa0408750:intron
AGCACATGCCCATATTCGAT+AGG 0.657099 3_2:+48741582 None:intergenic
CAAGAAAGAGGAGATCAGAA+GGG 0.657258 3_2:+48743230 None:intergenic
GTGGGAAATCAGTGGACACA+TGG 0.657940 3_2:-48740493 Msa0408750:CDS
TTGTTCTTCAGTAACAAACA+AGG 0.663734 3_2:-48740248 Msa0408750:exon
TGTCACACCTCAATGTCTAG+AGG 0.670162 3_2:-48740331 Msa0408750:CDS
ATTTGAGGCTAGCTGTGATG+GGG 0.674110 3_2:-48741944 Msa0408750:CDS
ATTGGGTTACAACAGCTTGG+GGG 0.681884 3_2:-48741457 Msa0408750:CDS
TGGGGTGTTGAAAACCCGAA+AGG 0.685451 3_2:-48743406 Msa0408750:five_prime_UTR
TGGGAGGATCGCATGCAGAG+AGG 0.711970 3_2:-48742288 Msa0408750:CDS
TCGAGTCCAAGAAAGCCACA+GGG 0.731554 3_2:+48742706 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTGATTATTTATTTAT+TGG - chr3_2:48741167-48741186 Msa0408750:CDS 10.0%
!!! ATAAGCAAAATTTTAATATT+TGG - chr3_2:48742530-48742549 Msa0408750:intron 10.0%
!! TTATATTATACAATTCAAAA+GGG + chr3_2:48743535-48743554 None:intergenic 10.0%
!! ATTATATTATACAATTCAAA+AGG + chr3_2:48743536-48743555 None:intergenic 10.0%
!!! TTGTTTTTGTTTTTGAATTA+TGG - chr3_2:48740675-48740694 Msa0408750:intron 15.0%
!!! TTTGAGTTTTGAATTTTTTA+TGG - chr3_2:48741208-48741227 Msa0408750:CDS 15.0%
!! GTTTATATTATAATTACTAG+TGG - chr3_2:48741361-48741380 Msa0408750:intron 15.0%
!! TTTAAATTGCAGTATTTATT+CGG - chr3_2:48741724-48741743 Msa0408750:intron 15.0%
!!! TAATTGATTCTTAATTTGTT+TGG + chr3_2:48742134-48742153 None:intergenic 15.0%
!! AATAATCAATGTAAACAATA+AGG + chr3_2:48742165-48742184 None:intergenic 15.0%
!!! TTATTGTTTACATTGATTAT+TGG - chr3_2:48742164-48742183 Msa0408750:intron 15.0%
!!! TTTTGTTGTTGTTTTGATTT+TGG - chr3_2:48740471-48740490 Msa0408750:CDS 20.0%
!!! TGTTTGTGATTTGATTTTTA+AGG - chr3_2:48740644-48740663 Msa0408750:intron 20.0%
!! TATATTTATCTTTGTCATGT+TGG - chr3_2:48741086-48741105 Msa0408750:CDS 20.0%
!! AACTTTAGTGAAATTGAATT+TGG + chr3_2:48741537-48741556 None:intergenic 20.0%
!! AAATTCAATTTCACTAAAGT+TGG - chr3_2:48741536-48741555 Msa0408750:CDS 20.0%
!! TATATTCTGATACTTCATAT+TGG - chr3_2:48741748-48741767 Msa0408750:intron 20.0%
!! ATATTCTGATACTTCATATT+GGG - chr3_2:48741749-48741768 Msa0408750:intron 20.0%
!!! TAATTTAAAACAATGCTTGA+TGG - chr3_2:48741859-48741878 Msa0408750:intron 20.0%
!! TAAAAAATTTCGGATTATCA+AGG + chr3_2:48742570-48742589 None:intergenic 20.0%
!!! ATCCGAAATTTTTTAATTTG+TGG - chr3_2:48742575-48742594 Msa0408750:intron 20.0%
!!! TCCGAAATTTTTTAATTTGT+GGG - chr3_2:48742576-48742595 Msa0408750:intron 20.0%
!! AATAAACTATGTAGTACAAA+TGG + chr3_2:48742746-48742765 None:intergenic 20.0%
!!! ATAGTGATTTTAATTTACTG+TGG - chr3_2:48743316-48743335 Msa0408750:five_prime_UTR 20.0%
!!! TCAAATAAAAAGTCTTTTAC+TGG + chr3_2:48743571-48743590 None:intergenic 20.0%
!!! GATGATTTTTTTTGGAGTAA+GGG + chr3_2:48739973-48739992 None:intergenic 25.0%
! AAGAATTGTAGAAATCATCA+CGG - chr3_2:48740147-48740166 Msa0408750:three_prime_UTR 25.0%
!! TGTTCTTCTTTTTCTCTTTT+AGG - chr3_2:48740327-48740346 Msa0408750:CDS 25.0%
!!! CTTTTAGGTTTTAGTTCTTT+AGG - chr3_2:48740342-48740361 Msa0408750:CDS 25.0%
!!! TTGTTGTTGTTGTGTTTTTT+TGG - chr3_2:48740715-48740734 Msa0408750:intron 25.0%
!!! TGTGTTTTTTTGGTTAATAG+AGG - chr3_2:48740725-48740744 Msa0408750:intron 25.0%
!! AGGTAGTTATCGAATTTTTA+TGG - chr3_2:48740853-48740872 Msa0408750:intron 25.0%
! CATAACCATCAATGATATAT+CGG + chr3_2:48741143-48741162 None:intergenic 25.0%
!!! TTGAATTTTTTATGGTGTAG+TGG - chr3_2:48741216-48741235 Msa0408750:CDS 25.0%
!!! TGAATTTTTTATGGTGTAGT+GGG - chr3_2:48741217-48741236 Msa0408750:CDS 25.0%
!!! ATTATAATTACTAGTGGACT+TGG - chr3_2:48741367-48741386 Msa0408750:intron 25.0%
!! TTGAATTTGGTTTCATCAAA+GGG + chr3_2:48741524-48741543 None:intergenic 25.0%
!! ATTGAATTTGGTTTCATCAA+AGG + chr3_2:48741525-48741544 None:intergenic 25.0%
! TATTCTGATACTTCATATTG+GGG - chr3_2:48741750-48741769 Msa0408750:intron 25.0%
! TGTTTATTTACTCGATTAAC+AGG - chr3_2:48741914-48741933 Msa0408750:CDS 25.0%
! AATCAATGTAAACAATAAGG+TGG + chr3_2:48742162-48742181 None:intergenic 25.0%
!! TTCTGATTTTTGACAAATTC+AGG - chr3_2:48742236-48742255 Msa0408750:intron 25.0%
! ACAAATTCAGGCATATTATT+TGG - chr3_2:48742248-48742267 Msa0408750:intron 25.0%
! AAGAAGATTGCCAAATTAAA+TGG - chr3_2:48742303-48742322 Msa0408750:intron 25.0%
! TCAGAAATAAGAACATTGTA+AGG + chr3_2:48742456-48742475 None:intergenic 25.0%
! CCCCACAAATTAAAAAATTT+CGG + chr3_2:48742580-48742599 None:intergenic 25.0%
!!! CCGAAATTTTTTAATTTGTG+GGG - chr3_2:48742577-48742596 Msa0408750:intron 25.0%
! TACAAATGGTTGTCAAATAA+CGG + chr3_2:48742732-48742751 None:intergenic 25.0%
!! AAATATTGATTGTGCAATCA+AGG + chr3_2:48742912-48742931 None:intergenic 25.0%
!!! CACTGTTTTTCAATTTGTAT+TGG + chr3_2:48742942-48742961 None:intergenic 25.0%
!!! ATCGATTTTTTCAGATGTAA+TGG + chr3_2:48743174-48743193 None:intergenic 25.0%
! TTGATGTAATAATTGCTCTT+TGG - chr3_2:48743484-48743503 Msa0408750:five_prime_UTR 25.0%
! TATTATACAATTCAAAAGGG+TGG + chr3_2:48743532-48743551 None:intergenic 25.0%
!!! TGATGTTTGTTTTGTTTTGG+TGG + chr3_2:48739946-48739965 None:intergenic 30.0%
!!! TGGTGATGTTTGTTTTGTTT+TGG + chr3_2:48739949-48739968 None:intergenic 30.0%
!!! ATTTTTTTTGGAGTAAGGGT+TGG + chr3_2:48739969-48739988 None:intergenic 30.0%
!!! GGATGATTTTTTTTGGAGTA+AGG + chr3_2:48739974-48739993 None:intergenic 30.0%
!!! AGAGAAGGGATGATTTTTTT+TGG + chr3_2:48739981-48740000 None:intergenic 30.0%
AAATGTTCTACACACGAAAA+GGG + chr3_2:48740095-48740114 None:intergenic 30.0%
AAAATGTTCTACACACGAAA+AGG + chr3_2:48740096-48740115 None:intergenic 30.0%
! TTTCTCAATTGTTTCTCAAG+TGG - chr3_2:48740423-48740442 Msa0408750:CDS 30.0%
! TTCTCAATTGTTTCTCAAGT+GGG - chr3_2:48740424-48740443 Msa0408750:CDS 30.0%
AGAAGATGTTGAGTATTAAG+AGG - chr3_2:48740518-48740537 Msa0408750:CDS 30.0%
GAAGATGTTGAGTATTAAGA+GGG - chr3_2:48740519-48740538 Msa0408750:CDS 30.0%
! GGTTGTTTCGAATTATCAAA+AGG - chr3_2:48740549-48740568 Msa0408750:CDS 30.0%
TTCGAATTATCAAAAGGATG+AGG - chr3_2:48740555-48740574 Msa0408750:CDS 30.0%
TTCCTTTGTATGGTTACAAA+AGG - chr3_2:48740754-48740773 Msa0408750:intron 30.0%
TCCTTTGTATGGTTACAAAA+GGG - chr3_2:48740755-48740774 Msa0408750:intron 30.0%
!!! ACGTTTTAGAAACTTGAGTA+TGG - chr3_2:48740990-48741009 Msa0408750:intron 30.0%
!!! GTATGTGTGGTTTTTTTTGT+TGG - chr3_2:48741396-48741415 Msa0408750:intron 30.0%
TGCCATCAATGTATGTTTAT+CGG - chr3_2:48741658-48741677 Msa0408750:intron 30.0%
ATCCGATAAACATACATTGA+TGG + chr3_2:48741663-48741682 None:intergenic 30.0%
GAAGTGAAGATGATTAATAG+TGG + chr3_2:48742099-48742118 None:intergenic 30.0%
TATTAATCATCTTCACTTCC+AGG - chr3_2:48742100-48742119 Msa0408750:CDS 30.0%
ATTTGTTTGGTTAAGATACC+TGG + chr3_2:48742121-48742140 None:intergenic 30.0%
! ATCACGTTTTCATTCATTGT+TGG + chr3_2:48742215-48742234 None:intergenic 30.0%
AAGATTGCCAAATTAAATGG+TGG - chr3_2:48742306-48742325 Msa0408750:intron 30.0%
TTTCACACCACCATTTAATT+TGG + chr3_2:48742316-48742335 None:intergenic 30.0%
!! AATGTTCTTATTTCTGACTG+CGG - chr3_2:48742459-48742478 Msa0408750:intron 30.0%
CTGAAAAACTAATTTACCTG+TGG + chr3_2:48742504-48742523 None:intergenic 30.0%
ATCAAGGATTACGATTTAAG+AGG + chr3_2:48742603-48742622 None:intergenic 30.0%
! CTTGATAATCTAGTCAAATG+CGG - chr3_2:48742617-48742636 Msa0408750:intron 30.0%
ACTAGTGTTATCAATATTCG+CGG - chr3_2:48742662-48742681 Msa0408750:intron 30.0%
TAAATACTGGATATAGAAGC+AGG + chr3_2:48742816-48742835 None:intergenic 30.0%
TATCCAGTATTTAACAACAC+TGG - chr3_2:48742823-48742842 Msa0408750:intron 30.0%
AGATTTCAAGCAACTAAAGA+GGG + chr3_2:48742885-48742904 None:intergenic 30.0%
AAGATTTCAAGCAACTAAAG+AGG + chr3_2:48742886-48742905 None:intergenic 30.0%
! TTGTTTGTTACTGAAGAACA+AGG + chr3_2:48743277-48743296 None:intergenic 30.0%
TTGTTCTTCAGTAACAAACA+AGG - chr3_2:48743276-48743295 Msa0408750:five_prime_UTR 30.0%
CAAGAACTTGATAGAATAAG+TGG - chr3_2:48743389-48743408 Msa0408750:five_prime_UTR 30.0%
GCTTGAATATTATTGCTTCA+TGG - chr3_2:48743447-48743466 Msa0408750:five_prime_UTR 30.0%
!!! TGTTTGTTTTGTTTTGGTGG+AGG + chr3_2:48739943-48739962 None:intergenic 35.0%
AGAAGCAAGATTAGGAATTG+GGG + chr3_2:48740013-48740032 None:intergenic 35.0%
GAGAAGCAAGATTAGGAATT+GGG + chr3_2:48740014-48740033 None:intergenic 35.0%
AGAGAAGCAAGATTAGGAAT+TGG + chr3_2:48740015-48740034 None:intergenic 35.0%
! TTTTCACCGTTTCTTGAACT+GGG - chr3_2:48740063-48740082 Msa0408750:three_prime_UTR 35.0%
AATGTTCTACACACGAAAAG+GGG + chr3_2:48740094-48740113 None:intergenic 35.0%
! TCGTGTGTAGAACATTTTTG+TGG - chr3_2:48740098-48740117 Msa0408750:three_prime_UTR 35.0%
! CGTGTGTAGAACATTTTTGT+GGG - chr3_2:48740099-48740118 Msa0408750:three_prime_UTR 35.0%
! GTGTGTAGAACATTTTTGTG+GGG - chr3_2:48740100-48740119 Msa0408750:three_prime_UTR 35.0%
ACAATTCTTCAACACCCTTT+CGG + chr3_2:48740136-48740155 None:intergenic 35.0%
AAATCATCACGGCTATTCAA+AGG - chr3_2:48740158-48740177 Msa0408750:three_prime_UTR 35.0%
AATCATCACGGCTATTCAAA+GGG - chr3_2:48740159-48740178 Msa0408750:three_prime_UTR 35.0%
TGATAATTCGAAACAACCGT+AGG + chr3_2:48740547-48740566 None:intergenic 35.0%
CTCAAGAGTTGTTGTATTCA+AGG - chr3_2:48740610-48740629 Msa0408750:intron 35.0%
CCTTTGTATGGTTACAAAAG+GGG - chr3_2:48740756-48740775 Msa0408750:intron 35.0%
TTCTTGGACTCGATTATTCT+TGG - chr3_2:48740828-48740847 Msa0408750:intron 35.0%
!! AAGTGCCGATATATCATTGA+TGG - chr3_2:48741135-48741154 Msa0408750:CDS 35.0%
!!! ATTTTTTATGGTGTAGTGGG+AGG - chr3_2:48741220-48741239 Msa0408750:CDS 35.0%
!!! TGTGTGGTTTTTTTTGTTGG+TGG - chr3_2:48741399-48741418 Msa0408750:intron 35.0%
!!! TGGTTTTTTTTGTTGGTGGT+AGG - chr3_2:48741403-48741422 Msa0408750:intron 35.0%
TTGTCAACTTGGAATTCAGT+TGG + chr3_2:48741491-48741510 None:intergenic 35.0%
! AACTGAATTCCAAGTTGACA+AGG - chr3_2:48741490-48741509 Msa0408750:CDS 35.0%
AGAGATCCTATTCCAATTTG+AGG - chr3_2:48741565-48741584 Msa0408750:CDS 35.0%
GGAGAATTCTCAACATCAAT+TGG + chr3_2:48741629-48741648 None:intergenic 35.0%
!! TCTTTTTGTCGTTTAGTGCA+TGG - chr3_2:48741700-48741719 Msa0408750:intron 35.0%
! AGGTTAGTCCTATCGAATAT+GGG - chr3_2:48741934-48741953 Msa0408750:CDS 35.0%
AGGAAATCCATATTTCCGAT+TGG - chr3_2:48742049-48742068 Msa0408750:CDS 35.0%
GGAAATCCATATTTCCGATT+GGG - chr3_2:48742050-48742069 Msa0408750:CDS 35.0%
TTGTAACCCAATCGGAAATA+TGG + chr3_2:48742059-48742078 None:intergenic 35.0%
CATTGTTGGAACACTAGATA+AGG + chr3_2:48742201-48742220 None:intergenic 35.0%
TTAGTAGAAGCCTTCTCAAT+TGG + chr3_2:48742285-48742304 None:intergenic 35.0%
AAGGTATGTTGTTGTGTTGA+AGG + chr3_2:48742437-48742456 None:intergenic 35.0%
!! ATGTTCTTATTTCTGACTGC+GGG - chr3_2:48742460-48742479 Msa0408750:intron 35.0%
TTATCAAGGATTGTAAGAGG+CGG + chr3_2:48742556-48742575 None:intergenic 35.0%
GGATTATCAAGGATTGTAAG+AGG + chr3_2:48742559-48742578 None:intergenic 35.0%
CGCATTTGACTAGATTATCA+AGG + chr3_2:48742619-48742638 None:intergenic 35.0%
TCAATATTCGCGGAAAATAG+CGG - chr3_2:48742672-48742691 Msa0408750:intron 35.0%
ACGGTTATAGTACTATTGTG+TGG + chr3_2:48742713-48742732 None:intergenic 35.0%
! CATCCAGTGTTGTTAAATAC+TGG + chr3_2:48742829-48742848 None:intergenic 35.0%
TTTAACAACACTGGATGTCA+TGG - chr3_2:48742832-48742851 Msa0408750:intron 35.0%
GGCTTGTATTTGATATCTAG+TGG - chr3_2:48743410-48743429 Msa0408750:five_prime_UTR 35.0%
!! TAATTGCTCTTTGGAGCTTT+AGG - chr3_2:48743493-48743512 Msa0408750:five_prime_UTR 35.0%
TGGAGAAGAGAAGCAAGATT+AGG + chr3_2:48740021-48740040 None:intergenic 40.0%
GAGGAAATTTGGAAGCTTTG+TGG + chr3_2:48740041-48740060 None:intergenic 40.0%
CGGTGAAAAGAGAGGAAATT+TGG + chr3_2:48740052-48740071 None:intergenic 40.0%
TCAAGAAACGGTGAAAAGAG+AGG + chr3_2:48740060-48740079 None:intergenic 40.0%
! CTTTTCACCGTTTCTTGAAC+TGG - chr3_2:48740062-48740081 Msa0408750:three_prime_UTR 40.0%
CAATTCTTCAACACCCTTTC+GGG + chr3_2:48740135-48740154 None:intergenic 40.0%
CAAGAAAGAGGAGATCAGAA+GGG + chr3_2:48740297-48740316 None:intergenic 40.0%
! CAATTGTTTCTCAAGTGGGT+TGG - chr3_2:48740428-48740447 Msa0408750:CDS 40.0%
GAGTATTAAGAGGGTTCCTA+CGG - chr3_2:48740528-48740547 Msa0408750:CDS 40.0%
TTTCGTCCACAACCATTAAC+AGG + chr3_2:48740586-48740605 None:intergenic 40.0%
! CCCCTTTTGTAACCATACAA+AGG + chr3_2:48740759-48740778 None:intergenic 40.0%
GGTCACCTATGAAGTATAGA+CGG - chr3_2:48740874-48740893 Msa0408750:intron 40.0%
GTTTGCCGTCTATACTTCAT+AGG + chr3_2:48740882-48740901 None:intergenic 40.0%
GTCAACGTCAGTGTTATGTT+CGG + chr3_2:48741019-48741038 None:intergenic 40.0%
ATAGAGAGAGATTCAGACCT+TGG + chr3_2:48741294-48741313 None:intergenic 40.0%
! ATTCAGTTGGTCTCTTCTTG+AGG + chr3_2:48741478-48741497 None:intergenic 40.0%
! ATTTGGTTTCATCAAAGGGC+TGG + chr3_2:48741520-48741539 None:intergenic 40.0%
! AGCTAGCCTCAAATTGGAAT+AGG + chr3_2:48741574-48741593 None:intergenic 40.0%
! AATTTGAGGCTAGCTGTGAT+GGG - chr3_2:48741579-48741598 Msa0408750:CDS 40.0%
! ACATTGATGGCAACAAAGCT+TGG + chr3_2:48741650-48741669 None:intergenic 40.0%
AAATTGCAGCCGCAATGTAA+GGG + chr3_2:48741825-48741844 None:intergenic 40.0%
! GCTTGATGGTTCAGTTGAAT+AGG - chr3_2:48741873-48741892 Msa0408750:intron 40.0%
! CAGGTTAGTCCTATCGAATA+TGG - chr3_2:48741933-48741952 Msa0408750:CDS 40.0%
! TTTTTCGCTTGCACTTCACA+TGG - chr3_2:48742016-48742035 Msa0408750:CDS 40.0%
! TCTGCCTTTTCCAATTGAGA+AGG - chr3_2:48742272-48742291 Msa0408750:CDS 40.0%
GAAGCCTTCTCAATTGGAAA+AGG + chr3_2:48742279-48742298 None:intergenic 40.0%
! TGATAACACTAGTGCCACTA+AGG + chr3_2:48742655-48742674 None:intergenic 40.0%
!! AGGAAAGTGCTATATCATGG+TGG + chr3_2:48742796-48742815 None:intergenic 40.0%
!! AGCAGGAAAGTGCTATATCA+TGG + chr3_2:48742799-48742818 None:intergenic 40.0%
GAGGGTTATAAGATAGTCTG+AGG + chr3_2:48742867-48742886 None:intergenic 40.0%
! CATGGTGTTAAAGAGGAAGA+AGG - chr3_2:48743049-48743068 Msa0408750:five_prime_UTR 40.0%
! CTCTTTAGAGAGAGAAACCT+CGG + chr3_2:48743117-48743136 None:intergenic 40.0%
! AGGTTTCTCTCTCTAAAGAG+AGG - chr3_2:48743117-48743136 Msa0408750:five_prime_UTR 40.0%
TCAACTTCCTCTAGACATTG+AGG + chr3_2:48743203-48743222 None:intergenic 40.0%
GTTCGACCCAGTTCAAGAAA+CGG + chr3_2:48740072-48740091 None:intergenic 45.0%
CGGCTATTCAAAGGGTTTCA+CGG - chr3_2:48740167-48740186 Msa0408750:three_prime_UTR 45.0%
GCAAGAAAGAGGAGATCAGA+AGG + chr3_2:48740298-48740317 None:intergenic 45.0%
TCTGATCTCCTCTTTCTTGC+TGG - chr3_2:48740298-48740317 Msa0408750:CDS 45.0%
GATGAGGATGCTCCTGTTAA+TGG - chr3_2:48740571-48740590 Msa0408750:intron 45.0%
GATGCTCCTGTTAATGGTTG+TGG - chr3_2:48740577-48740596 Msa0408750:intron 45.0%
GTATGGTTACAAAAGGGGTG+AGG - chr3_2:48740761-48740780 Msa0408750:intron 45.0%
TTACAAAAGGGGTGAGGCAA+AGG - chr3_2:48740767-48740786 Msa0408750:intron 45.0%
GGACTCGATTATTCTTGGAC+AGG - chr3_2:48740833-48740852 Msa0408750:intron 45.0%
GACGTTGACACATACAGCTA+TGG - chr3_2:48741030-48741049 Msa0408750:intron 45.0%
GTCATGTTGGCGTTAGAAAC+TGG - chr3_2:48741099-48741118 Msa0408750:CDS 45.0%
CACAGGCAGTAACATCGTAA+CGG + chr3_2:48741268-48741287 None:intergenic 45.0%
TGTTACTGCCTGTGAAACCA+AGG - chr3_2:48741274-48741293 Msa0408750:intron 45.0%
GATTCAGACCTTGGTTTCAC+AGG + chr3_2:48741285-48741304 None:intergenic 45.0%
! GACTTGGTCTCATGTATGTG+TGG - chr3_2:48741383-48741402 Msa0408750:intron 45.0%
!! TTGTTGGTGGTAGGTGATTC+CGG - chr3_2:48741412-48741431 Msa0408750:intron 45.0%
GCAATGAAACCATACTCACC+CGG + chr3_2:48741434-48741453 None:intergenic 45.0%
TTTCATTGCTCAGCTGAACG+AGG - chr3_2:48741445-48741464 Msa0408750:CDS 45.0%
TTCATTGCTCAGCTGAACGA+GGG - chr3_2:48741446-48741465 Msa0408750:CDS 45.0%
! CATCACAGCTAGCCTCAAAT+TGG + chr3_2:48741580-48741599 None:intergenic 45.0%
! CAATTTGAGGCTAGCTGTGA+TGG - chr3_2:48741578-48741597 Msa0408750:CDS 45.0%
! ATTTGAGGCTAGCTGTGATG+GGG - chr3_2:48741580-48741599 Msa0408750:CDS 45.0%
CCATAGTTTATGTCGCGATG+CGG - chr3_2:48741782-48741801 Msa0408750:intron 45.0%
CCTCCAAAACCCTTACATTG+CGG - chr3_2:48741813-48741832 Msa0408750:intron 45.0%
CAAATTGCAGCCGCAATGTA+AGG + chr3_2:48741826-48741845 None:intergenic 45.0%
TACATTGCGGCTGCAATTTG+CGG - chr3_2:48741826-48741845 Msa0408750:intron 45.0%
AGCACATGCCCATATTCGAT+AGG + chr3_2:48741945-48741964 None:intergenic 45.0%
GGCAAACACTCGAAAATTCG+AGG + chr3_2:48741975-48741994 None:intergenic 45.0%
!!! TTTTCGAGTGTTTGCCCCAA+AGG - chr3_2:48741979-48741998 Msa0408750:CDS 45.0%
ATTCGCGTGATCGATCCTTT+GGG + chr3_2:48741997-48742016 None:intergenic 45.0%
AATTCGCGTGATCGATCCTT+TGG + chr3_2:48741998-48742017 None:intergenic 45.0%
CCAAGCTGTTGTAACCCAAT+CGG + chr3_2:48742067-48742086 None:intergenic 45.0%
CGATTGGGTTACAACAGCTT+GGG - chr3_2:48742065-48742084 Msa0408750:CDS 45.0%
GATTGGGTTACAACAGCTTG+GGG - chr3_2:48742066-48742085 Msa0408750:CDS 45.0%
ATTGGGTTACAACAGCTTGG+GGG - chr3_2:48742067-48742086 Msa0408750:CDS 45.0%
TTGTTGAACTATCCCGTCAG+AGG - chr3_2:48742345-48742364 Msa0408750:intron 45.0%
TCAAAGACAAGACCTCTGAC+GGG + chr3_2:48742360-48742379 None:intergenic 45.0%
CTCAAAGACAAGACCTCTGA+CGG + chr3_2:48742361-48742380 None:intergenic 45.0%
! GTCAGAGGTCTTGTCTTTGA+GGG - chr3_2:48742360-48742379 Msa0408750:intron 45.0%
GCAGATACAGGCTTCAGAAA+CGG + chr3_2:48742415-48742434 None:intergenic 45.0%
GTTGTGTTGAAGGCAGATAC+AGG + chr3_2:48742427-48742446 None:intergenic 45.0%
!! TTCTTATTTCTGACTGCGGG+AGG - chr3_2:48742463-48742482 Msa0408750:intron 45.0%
! GCGAGTTTTTCTCTTACCAC+AGG - chr3_2:48742485-48742504 Msa0408750:intron 45.0%
TGCCACTAAGGTTGTGTTTG+AGG + chr3_2:48742643-48742662 None:intergenic 45.0%
TACGCAGAGAAACAAGCTCT+TGG - chr3_2:48742963-48742982 Msa0408750:CDS 45.0%
GCAAGTTAATCCAGCTGTGT+GGG - chr3_2:48743013-48743032 Msa0408750:exon 45.0%
! GTGGACACATGGTGTTAAAG+AGG - chr3_2:48743042-48743061 Msa0408750:five_prime_UTR 45.0%
GAGGAAGAAGGACTTTGATG+AGG - chr3_2:48743061-48743080 Msa0408750:five_prime_UTR 45.0%
TGTCACACCTCAATGTCTAG+AGG - chr3_2:48743193-48743212 Msa0408750:five_prime_UTR 45.0%
CTCAAACACTAAGCCTGCTA+TGG - chr3_2:48743232-48743251 Msa0408750:five_prime_UTR 45.0%
AAACACTAAGCCTGCTATGG+TGG - chr3_2:48743235-48743254 Msa0408750:five_prime_UTR 45.0%
TGGGGTGTGAGAGAAGAGAA+GGG + chr3_2:48739995-48740014 None:intergenic 50.0%
TTGGGGTGTGAGAGAAGAGA+AGG + chr3_2:48739996-48740015 None:intergenic 50.0%
!! TGGGGTGTTGAAAACCCGAA+AGG - chr3_2:48740118-48740137 Msa0408750:three_prime_UTR 50.0%
!! GGGGTGTTGAAAACCCGAAA+GGG - chr3_2:48740119-48740138 Msa0408750:three_prime_UTR 50.0%
CTTACGTCGTGAACAACGAC+GGG + chr3_2:48740206-48740225 None:intergenic 50.0%
CCTTACGTCGTGAACAACGA+CGG + chr3_2:48740207-48740226 None:intergenic 50.0%
CGTCGTTGTTCACGACGTAA+GGG - chr3_2:48740205-48740224 Msa0408750:three_prime_UTR 50.0%
GATCTCCTCTTTCTTGCTGG+TGG - chr3_2:48740301-48740320 Msa0408750:CDS 50.0%
GAGGCGAAGCTTCCTTTGTA+TGG - chr3_2:48740744-48740763 Msa0408750:intron 50.0%
CTTGTCTCCCATTGCATGCA+AGG - chr3_2:48740791-48740810 Msa0408750:intron 50.0%
TCGAGTCCAAGAAAGCCACA+GGG + chr3_2:48740821-48740840 None:intergenic 50.0%
ATCGAGTCCAAGAAAGCCAC+AGG + chr3_2:48740822-48740841 None:intergenic 50.0%
!! TGTTGGTGGTAGGTGATTCC+GGG - chr3_2:48741413-48741432 Msa0408750:intron 50.0%
TAGGTGATTCCGGGTGAGTA+TGG - chr3_2:48741422-48741441 Msa0408750:intron 50.0%
GCTGGAGAACCTTGTCAACT+TGG + chr3_2:48741502-48741521 None:intergenic 50.0%
TCAACATCAATTGGCGCGTC+GGG + chr3_2:48741620-48741639 None:intergenic 50.0%
CTCAACATCAATTGGCGCGT+CGG + chr3_2:48741621-48741640 None:intergenic 50.0%
CCGCATCGCGACATAAACTA+TGG + chr3_2:48741785-48741804 None:intergenic 50.0%
!! CCGCAATGTAAGGGTTTTGG+AGG + chr3_2:48741816-48741835 None:intergenic 50.0%
! CAGCCGCAATGTAAGGGTTT+TGG + chr3_2:48741819-48741838 None:intergenic 50.0%
TTCGCGTGATCGATCCTTTG+GGG + chr3_2:48741996-48742015 None:intergenic 50.0%
CCGATTGGGTTACAACAGCT+TGG - chr3_2:48742064-48742083 Msa0408750:CDS 50.0%
! CGTCAGAGGTCTTGTCTTTG+AGG - chr3_2:48742359-48742378 Msa0408750:intron 50.0%
! AGAGGTCTTGTCTTTGAGGG+TGG - chr3_2:48742363-48742382 Msa0408750:intron 50.0%
GGCCTCAAACACAACCTTAG+TGG - chr3_2:48742638-48742657 Msa0408750:intron 50.0%
CGCAAGTTAATCCAGCTGTG+TGG - chr3_2:48743012-48743031 Msa0408750:exon 50.0%
GTGGGAAATCAGTGGACACA+TGG - chr3_2:48743031-48743050 Msa0408750:five_prime_UTR 50.0%
! AGGCATCTGAAGCCAATGCT+CGG - chr3_2:48743081-48743100 Msa0408750:five_prime_UTR 50.0%
CCGTCGTTGTTCACGACGTA+AGG - chr3_2:48740204-48740223 Msa0408750:three_prime_UTR 55.0%
CGTGGTGCTCTTCCTTCTGA+AGG - chr3_2:48740265-48740284 Msa0408750:CDS 55.0%
! GGTGCTCTTCCTTCTGAAGG+TGG - chr3_2:48740268-48740287 Msa0408750:CDS 55.0%
GAAGGGCTACCACCTTCAGA+AGG + chr3_2:48740280-48740299 None:intergenic 55.0%
CTCCTCTTTCTTGCTGGTGG+TGG - chr3_2:48740304-48740323 Msa0408750:CDS 55.0%
CACCACCACCAGCAAGAAAG+AGG + chr3_2:48740309-48740328 None:intergenic 55.0%
GGGCGTTCCTTGCATGCAAT+GGG + chr3_2:48740801-48740820 None:intergenic 55.0%
! AGGGCGTTCCTTGCATGCAA+TGG + chr3_2:48740802-48740821 None:intergenic 55.0%
TGGCGCGTCGGGAAAGAATT+GGG + chr3_2:48741609-48741628 None:intergenic 55.0%
TTGGCGCGTCGGGAAAGAAT+TGG + chr3_2:48741610-48741629 None:intergenic 55.0%
CTTCACATGGCAGCTGAAGC+AGG - chr3_2:48742029-48742048 Msa0408750:CDS 55.0%
! CTTTGAGGGTGGTCATGCAC+TGG - chr3_2:48742374-48742393 Msa0408750:intron 55.0%
! AGAAGTGCGTGCTGAGCTTC+TGG - chr3_2:48742986-48743005 Msa0408750:CDS 55.0%
!! CCACTGATTTCCCACACAGC+TGG + chr3_2:48743026-48743045 None:intergenic 55.0%
CCAGCTGTGTGGGAAATCAG+TGG - chr3_2:48743023-48743042 Msa0408750:exon 55.0%
! GGCATCTGAAGCCAATGCTC+GGG - chr3_2:48743082-48743101 Msa0408750:five_prime_UTR 55.0%
ACTAAGCCTGCTATGGTGGC+TGG - chr3_2:48743239-48743258 Msa0408750:five_prime_UTR 55.0%
TGCATGCAAGGAACGCCCTG+TGG - chr3_2:48740803-48740822 Msa0408750:intron 60.0%
GGAACGCCCTGTGGCTTTCT+TGG - chr3_2:48740812-48740831 Msa0408750:intron 60.0%
TGGGAGGATCGCATGCAGAG+AGG - chr3_2:48741236-48741255 Msa0408750:CDS 60.0%
GGCAAGAAGCTCCCGAGCAT+TGG + chr3_2:48743096-48743115 None:intergenic 60.0%
TGCGAACCAGCCACCATAGC+AGG + chr3_2:48743248-48743267 None:intergenic 60.0%
GAGACCAACCCTTCGCCGCA+CGG - chr3_2:48740238-48740257 Msa0408750:exon 65.0%
TGCTCGGGAGCTTCTTGCCG+AGG - chr3_2:48743097-48743116 Msa0408750:five_prime_UTR 65.0%
ACCAACCCTTCGCCGCACGG+CGG - chr3_2:48740241-48740260 Msa0408750:exon 70.0%
CCAACCCTTCGCCGCACGGC+GGG - chr3_2:48740242-48740261 Msa0408750:exon 75.0%
! AGAGCACCACGCCCGCCGTG+CGG + chr3_2:48740256-48740275 None:intergenic 75.0%
! CCCGCCGTGCGGCGAAGGGT+TGG + chr3_2:48740245-48740264 None:intergenic 80.0%
! CACGCCCGCCGTGCGGCGAA+GGG + chr3_2:48740249-48740268 None:intergenic 80.0%
! CCACGCCCGCCGTGCGGCGA+AGG + chr3_2:48740250-48740269 None:intergenic 85.0%
! CCTTCGCCGCACGGCGGGCG+TGG - chr3_2:48740247-48740266 Msa0408750:exon 85.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 48739929 48743617 48739929 ID=Msa0408750;Name=Msa0408750
chr3_2 mRNA 48739929 48743617 48739929 ID=Msa0408750-mRNA-1;Parent=Msa0408750;Name=Msa0408750-mRNA-1;_AED=0.03;_eAED=0.03;_QI=594|1|1|1|1|1|7|328|428
chr3_2 exon 48739929 48740586 48739929 ID=Msa0408750-mRNA-1:exon:9505;Parent=Msa0408750-mRNA-1
chr3_2 exon 48741040 48741288 48741040 ID=Msa0408750-mRNA-1:exon:9504;Parent=Msa0408750-mRNA-1
chr3_2 exon 48741425 48741610 48741425 ID=Msa0408750-mRNA-1:exon:9503;Parent=Msa0408750-mRNA-1
chr3_2 exon 48741879 48742121 48741879 ID=Msa0408750-mRNA-1:exon:9502;Parent=Msa0408750-mRNA-1
chr3_2 exon 48742251 48742310 48742251 ID=Msa0408750-mRNA-1:exon:9501;Parent=Msa0408750-mRNA-1
chr3_2 exon 48742692 48742801 48742692 ID=Msa0408750-mRNA-1:exon:9500;Parent=Msa0408750-mRNA-1
chr3_2 exon 48742915 48743617 48742915 ID=Msa0408750-mRNA-1:exon:9499;Parent=Msa0408750-mRNA-1
chr3_2 five_prime_UTR 48743024 48743617 48743024 ID=Msa0408750-mRNA-1:five_prime_utr;Parent=Msa0408750-mRNA-1
chr3_2 CDS 48742915 48743023 48742915 ID=Msa0408750-mRNA-1:cds;Parent=Msa0408750-mRNA-1
chr3_2 CDS 48742692 48742801 48742692 ID=Msa0408750-mRNA-1:cds;Parent=Msa0408750-mRNA-1
chr3_2 CDS 48742251 48742310 48742251 ID=Msa0408750-mRNA-1:cds;Parent=Msa0408750-mRNA-1
chr3_2 CDS 48741879 48742121 48741879 ID=Msa0408750-mRNA-1:cds;Parent=Msa0408750-mRNA-1
chr3_2 CDS 48741425 48741610 48741425 ID=Msa0408750-mRNA-1:cds;Parent=Msa0408750-mRNA-1
chr3_2 CDS 48741040 48741288 48741040 ID=Msa0408750-mRNA-1:cds;Parent=Msa0408750-mRNA-1
chr3_2 CDS 48740257 48740586 48740257 ID=Msa0408750-mRNA-1:cds;Parent=Msa0408750-mRNA-1
chr3_2 three_prime_UTR 48739929 48740256 48739929 ID=Msa0408750-mRNA-1:three_prime_utr;Parent=Msa0408750-mRNA-1
Gene Sequence

>Msa0408750

ATGTTGAGTATTAAGAGGGTTCCTACGGTTGTTTCGAATTATCAAAAGGATGAGGATGCTCCTGTTAATGGTTGTGGACGAAATTGTCTCAAGAGTTGTTGTATTCAAGAGGCGAAGCTTCCTTTGTATGGTTACAAAAGGGGTGAGGCAAAGGACTTGTCTCCCATTGCATGCAAGGAACGCCCTGTGGCTTTCTTGGACTCGATTATTCTTGGACAGTGGGAGGATCGCATGCAGAGAGGACTGTTCCGTTACGATGTTACTGCCTGTGAAACCAAGGTGATTCCGGGTGAGTATGGTTTCATTGCTCAGCTGAACGAGGGTCGTCACCTCAAGAAGAGACCAACTGAATTCCAAGTTGACAAGGTTCTCCAGCCCTTTGATGAAACCAAATTCAATTTCACTAAAGTTGGACAAGAAGAGATCCTATTCCAATTTGAGGCTAGCTGTGATGGGGAAGCCCAATTCTTTCCCGACGCGCCAATTGATGTTGAGAATTCTCCAAGCTTTGTTGCCATCAATGTTAGTCCTATCGAATATGGGCATGTGCTTCTGATTCCTCGAATTTTCGAGTGTTTGCCCCAAAGGATCGATCACGCGAATTTTTCGCTTGCACTTCACATGGCAGCTGAAGCAGGAAATCCATATTTCCGATTGGGTTACAACAGCTTGGGGGCTTTCGCCACTATTAATCATCTTCACTTCCAGGCATATTATTTGGCTCTGCCTTTTCCAATTGAGAAGGCTTCTACTAAGAAGATTGCCAAATTAAATGGTGGTGTGAAAATATCTAAATTGTTGAACTATCCCGTCAGAGGTCTTGTCTTTGAGGGTGGTCATGCACTGGATGATTTAGCAAACACCGTTTCTGAAGCCTGTATCTGCCTTCAACACAACAACATACCTTACAATGTTCTTATTTCTGACTGCGGGAGGCGAGTTTTTCTCTTACCACAGTGCTACGCAGAGAAACAAGCTCTTGGAGAAGTGCGTGCTGAGCTTCTGGACACGCAAGTTAATCCAGCTGTGTGGGAAATCAGTGGACACATGGTGTTAAAGAGGAAGAAGGACTTTGATGAGGCATCTGAAGCCAATGCTCGGGAGCTTCTTGCCGAGGTTTCTCTCTCTAAAGAGAGGTTTGAAGAAGTCAATGCTCTTATTTTTCAAGCCATTACATCTGAAAAAATCGATGTCACACCTCAATGTCTAGAGGAAGTTGATGCAGTAAGCTCAAACACTAAGCCTGCTATGGTGGCTGGTTCGCATGAATGCCTTGTTCTTCAGTAA
Protein sequence

>Msa0408750

MLSIKRVPTVVSNYQKDEDAPVNGCGRNCLKSCCIQEAKLPLYGYKRGEAKDLSPIACKERPVAFLDSIILGQWEDRMQRGLFRYDVTACETKVIPGEYGFIAQLNEGRHLKKRPTEFQVDKVLQPFDETKFNFTKVGQEEILFQFEASCDGEAQFFPDAPIDVENSPSFVAINVSPIEYGHVLLIPRIFECLPQRIDHANFSLALHMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYLALPFPIEKASTKKIAKLNGGVKISKLLNYPVRGLVFEGGHALDDLANTVSEACICLQHNNIPYNVLISDCGRRVFLLPQCYAEKQALGEVRAELLDTQVNPAVWEISGHMVLKRKKDFDEASEANARELLAEVSLSKERFEEVNALIFQAITSEKIDVTPQCLEEVDAVSSNTKPAMVAGSHECLVLQ*