Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412770 | XP_013460204.1 | 97.942 | 486 | 9 | 1 | 58 | 542 | 1 | 486 | 0.0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412770 | sp|Q8W032|CDC6B_ARATH | 59.631 | 488 | 166 | 7 | 65 | 541 | 37 | 504 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412770 | A0A072V7S0 | 97.942 | 486 | 9 | 1 | 58 | 542 | 1 | 486 | 0.0 | 979 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0412770 | Msa0714520 | 0.803907 | 2.786280e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412770 | MtrunA17_Chr3g0104521 | 97.942 | 486 | 9 | 1 | 58 | 542 | 1 | 486 | 0.0 | 979 |
| Msa0412770 | MtrunA17_Chr8g0388451 | 30.855 | 269 | 166 | 7 | 136 | 391 | 493 | 754 | 6.48e-23 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412770 | AT2G29680.2 | 60.593 | 472 | 164 | 7 | 74 | 541 | 54 | 507 | 0.0 | 577 |
| Msa0412770 | AT1G07270.1 | 59.631 | 488 | 166 | 7 | 65 | 541 | 37 | 504 | 0.0 | 576 |
| Msa0412770 | AT2G29680.1 | 56.859 | 503 | 164 | 8 | 74 | 541 | 54 | 538 | 0.0 | 560 |
| Msa0412770 | AT1G07270.2 | 58.797 | 449 | 154 | 7 | 65 | 502 | 37 | 465 | 1.04e-179 | 514 |
| Msa0412770 | AT4G14700.1 | 31.461 | 267 | 165 | 7 | 132 | 388 | 417 | 675 | 1.56e-28 | 120 |
| Msa0412770 | AT4G12620.1 | 27.095 | 358 | 220 | 10 | 132 | 479 | 422 | 748 | 7.34e-25 | 109 |
Find 116 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAAGTTGCTGCAGCTTC+TGG | 0.191734 | 3_2:-56525414 | Msa0412770:CDS |
| AATATCACCTTCATCTAGTT+TGG | 0.232074 | 3_2:+56524006 | None:intergenic |
| TCTTCAGTGATCCTGCTTAC+TGG | 0.251696 | 3_2:-56523831 | Msa0412770:exon |
| CACTGGTGATCTATATGTTT+TGG | 0.269767 | 3_2:+56524393 | None:intergenic |
| ATAAGTATACATCTGGAAAA+TGG | 0.278203 | 3_2:+56526192 | None:intergenic |
| TGAAAGCGAATTTACTCAAT+TGG | 0.285367 | 3_2:-56527526 | Msa0412770:CDS |
| GCCAAGGATTGAGTCTTTCT+TGG | 0.309468 | 3_2:+56524297 | None:intergenic |
| GGGATTGTCCTAGTTTAATA+AGG | 0.315431 | 3_2:+56524056 | None:intergenic |
| TTTACCTTTGGGGTTCCATT+TGG | 0.317882 | 3_2:+56527949 | None:intergenic |
| TTAGAAGCAAGAGATGTTAG+AGG | 0.324884 | 3_2:-56523794 | Msa0412770:three_prime_UTR |
| GCCTTTCTTGAATAATCTTA+AGG | 0.338025 | 3_2:+56525796 | None:intergenic |
| TGCTTGCAATTTGAATGCTT+TGG | 0.345235 | 3_2:-56525028 | Msa0412770:CDS |
| AGGAGAAGTGGTGGTTGGGA+TGG | 0.358395 | 3_2:+56528096 | None:intergenic |
| GGTGGTTGGGATGGGTGTGG+CGG | 0.362843 | 3_2:+56528105 | None:intergenic |
| TTTGCGGGTGGGAGGAGAAG+TGG | 0.371401 | 3_2:+56528084 | None:intergenic |
| GACGGATGAGGTGACTGAAT+TGG | 0.378280 | 3_2:+56528033 | None:intergenic |
| TGAATGTTATGGCAGATACT+TGG | 0.388525 | 3_2:-56526519 | Msa0412770:intron |
| GGAGAAGTGGTGGTTGGGAT+GGG | 0.391658 | 3_2:+56528097 | None:intergenic |
| TTGTAGTTGGTGTGGTAAGC+GGG | 0.396500 | 3_2:+56528270 | None:intergenic |
| ATATGTGGCTGTCCTGGAAC+TGG | 0.401759 | 3_2:-56527572 | Msa0412770:CDS |
| GTGGGAGGAGAAGTGGTGGT+TGG | 0.403628 | 3_2:+56528091 | None:intergenic |
| ATGGAGCACAGCTCTGTCTT+TGG | 0.404599 | 3_2:+56526239 | None:intergenic |
| CTCTTCTCAATTTATCATCT+CGG | 0.404980 | 3_2:+56524035 | None:intergenic |
| AAGATTGAGGGATTTGTAGT+TGG | 0.406997 | 3_2:+56528257 | None:intergenic |
| TGGGAGGAGAAGTGGTGGTT+GGG | 0.408613 | 3_2:+56528092 | None:intergenic |
| GTGGTTGGGATGGGTGTGGC+GGG | 0.412163 | 3_2:+56528106 | None:intergenic |
| AAAATGAATGAGATTGAGAT+TGG | 0.415873 | 3_2:+56528223 | None:intergenic |
| TTTACCTATAAGTATACATC+TGG | 0.416440 | 3_2:+56526185 | None:intergenic |
| ACGGATGAGGTGACTGAATT+GGG | 0.418020 | 3_2:+56528034 | None:intergenic |
| TCTTCTCAATTTATCATCTC+GGG | 0.421882 | 3_2:+56524036 | None:intergenic |
| CTGCATCTCTTAAATCCAAA+TGG | 0.426211 | 3_2:-56527964 | Msa0412770:CDS |
| ATATCACCTTCATCTAGTTT+GGG | 0.428146 | 3_2:+56524007 | None:intergenic |
| CTGCAGGGCCTTATTAAACT+AGG | 0.430579 | 3_2:-56524064 | Msa0412770:intron |
| CTTTATATATGTGGCTGTCC+TGG | 0.432935 | 3_2:-56527578 | Msa0412770:CDS |
| CAAGTTCTGAAGTTGCTGTA+AGG | 0.433527 | 3_2:+56526458 | None:intergenic |
| GCAGGTAAGGATTGATCATA+TGG | 0.450580 | 3_2:-56524428 | Msa0412770:intron |
| CATTTGGATTTAAGAGATGC+AGG | 0.470958 | 3_2:+56527965 | None:intergenic |
| GTGATCCTGCTTACTGGTTG+TGG | 0.472016 | 3_2:-56523825 | Msa0412770:exon |
| TTGCAGAGATGCAACGGCGG+GGG | 0.472950 | 3_2:+56528059 | None:intergenic |
| TCCTTAAGATTATTCAAGAA+AGG | 0.473235 | 3_2:-56525797 | Msa0412770:CDS |
| AATGAGATTGAGATTGGAAA+TGG | 0.475311 | 3_2:+56528229 | None:intergenic |
| GACAACGATTTCCCAGTTCC+AGG | 0.478633 | 3_2:+56527560 | None:intergenic |
| AGTTGCAGAGATGCAACGGC+GGG | 0.480036 | 3_2:+56528057 | None:intergenic |
| TCTTACATCATGTTCGATGT+AGG | 0.481162 | 3_2:+56526420 | None:intergenic |
| CAATTTAATGCAGTAAGCCT+TGG | 0.483021 | 3_2:+56526021 | None:intergenic |
| GAAAGCGAATTTACTCAATT+GGG | 0.484371 | 3_2:-56527525 | Msa0412770:CDS |
| GAAATGGTGAAGAAGATTGA+GGG | 0.485978 | 3_2:+56528245 | None:intergenic |
| GTGTGGTAAGCGGGAAAACA+TGG | 0.488618 | 3_2:+56528279 | None:intergenic |
| AAGCATTGGAACTATGTGCC+AGG | 0.493882 | 3_2:-56525538 | Msa0412770:CDS |
| GAAAATTCCATGATTCCAGC+AGG | 0.495615 | 3_2:+56524226 | None:intergenic |
| AGTGGTGGTTGGGATGGGTG+TGG | 0.498532 | 3_2:+56528102 | None:intergenic |
| GCCAAGAAAGACTCAATCCT+TGG | 0.501996 | 3_2:-56524298 | Msa0412770:CDS |
| TTATAGATGGGGAGCAAATG+AGG | 0.504862 | 3_2:-56527721 | Msa0412770:intron |
| CGTTTGGAAGATGCAATTGA+AGG | 0.507020 | 3_2:+56528142 | None:intergenic |
| TAGCTGATCGATTTCTTCCA+AGG | 0.509008 | 3_2:-56526038 | Msa0412770:CDS |
| ATGATGTGGCAGAGATTGTA+TGG | 0.514538 | 3_2:+56524363 | None:intergenic |
| TGGTAAGCATGAAAAGATCA+TGG | 0.521734 | 3_2:+56526220 | None:intergenic |
| GAATGTTATGGCAGATACTT+GGG | 0.522833 | 3_2:-56526518 | Msa0412770:intron |
| GGGAGATCTGAATCTGCGTT+TGG | 0.525558 | 3_2:+56528126 | None:intergenic |
| GGAAATGGTGAAGAAGATTG+AGG | 0.526193 | 3_2:+56528244 | None:intergenic |
| ATAGTTCCAATGCTTGATGT+TGG | 0.531773 | 3_2:+56525546 | None:intergenic |
| AAGTTCTGAAGTTGCTGTAA+GGG | 0.532699 | 3_2:+56526459 | None:intergenic |
| TGTTGCCACAACCAGTAAGC+AGG | 0.534198 | 3_2:+56523820 | None:intergenic |
| GCAAATGAGGATTGTGAAGG+AGG | 0.535525 | 3_2:-56527708 | Msa0412770:CDS |
| TTGAGTCTTTCTTGGCTCCA+CGG | 0.537855 | 3_2:+56524305 | None:intergenic |
| TGATGTTGGAAGACGATGTA+AGG | 0.542035 | 3_2:+56525560 | None:intergenic |
| TGGATTTAAGAGATGCAGGT+TGG | 0.543440 | 3_2:+56527969 | None:intergenic |
| GGAAGAGCAAAATGTGGTGC+TGG | 0.549127 | 3_2:-56527642 | Msa0412770:CDS |
| TTTGTAGTTGGTGTGGTAAG+CGG | 0.549715 | 3_2:+56528269 | None:intergenic |
| TGCAGAGATGCAACGGCGGG+GGG | 0.549879 | 3_2:+56528060 | None:intergenic |
| ACATCTGGAAAATGGAAAAG+TGG | 0.550640 | 3_2:+56526200 | None:intergenic |
| GAAATGCTCTTTGTATATGC+AGG | 0.555579 | 3_2:-56525383 | Msa0412770:intron |
| TGAGGGATTTGTAGTTGGTG+TGG | 0.556394 | 3_2:+56528262 | None:intergenic |
| TTTACTCAATTGGGCTGCAG+AGG | 0.556912 | 3_2:-56527516 | Msa0412770:intron |
| CAATTTACAGATAAAACATC+GGG | 0.559439 | 3_2:+56526667 | None:intergenic |
| GATTGTATGGTATCCACCAC+TGG | 0.560837 | 3_2:+56524376 | None:intergenic |
| GCTGGGAGTCTTTATATATG+TGG | 0.561220 | 3_2:-56527587 | Msa0412770:CDS |
| TGAAATGAAAACACTATCGC+GGG | 0.563667 | 3_2:-56528320 | Msa0412770:exon |
| AAAATGAAGAAAGATGAAAG+AGG | 0.564631 | 3_2:+56528200 | None:intergenic |
| GCGGGTGGGAGGAGAAGTGG+TGG | 0.567880 | 3_2:+56528087 | None:intergenic |
| CGTCTTCCAACATCAAGCAT+TGG | 0.568966 | 3_2:-56525552 | Msa0412770:CDS |
| AACTGGGAAATCGTTGTCGA+TGG | 0.571839 | 3_2:-56527555 | Msa0412770:CDS |
| AAGATTTATATAACTCGCCA+AGG | 0.575313 | 3_2:+56524281 | None:intergenic |
| TGGGAGTTGCAGAGATGCAA+CGG | 0.581077 | 3_2:+56528053 | None:intergenic |
| ACAGATAAAACATCGGGCAG+CGG | 0.584343 | 3_2:+56526673 | None:intergenic |
| GTCTACGATGGTGTGTCGTG+AGG | 0.587739 | 3_2:-56527663 | Msa0412770:CDS |
| AACATATAGATCACCAGTGG+TGG | 0.589208 | 3_2:-56524389 | Msa0412770:CDS |
| GTTGCAGAGATGCAACGGCG+GGG | 0.591357 | 3_2:+56528058 | None:intergenic |
| AGTGACTGACTTTACCTTTG+GGG | 0.592012 | 3_2:+56527939 | None:intergenic |
| TTAACACAATCCGGTGCTGT+AGG | 0.592563 | 3_2:+56524976 | None:intergenic |
| AGTATAATTTGTTGATGATG+TGG | 0.593647 | 3_2:+56524349 | None:intergenic |
| ACAAAATCTTCCTACAGCAC+CGG | 0.597497 | 3_2:-56524986 | Msa0412770:CDS |
| GATTTGTCGAACGACGGATG+AGG | 0.599474 | 3_2:+56528021 | None:intergenic |
| AAAATTCCATGATTCCAGCA+GGG | 0.599680 | 3_2:+56524227 | None:intergenic |
| GTGACACCCAAACTAGATGA+AGG | 0.606981 | 3_2:-56524013 | Msa0412770:CDS |
| GCCCGAAAAGTTACAACAGT+AGG | 0.614021 | 3_2:+56525837 | None:intergenic |
| GTGCAGAGTGTTAAATGACC+AGG | 0.620640 | 3_2:-56524197 | Msa0412770:intron |
| AAATTCCATGATTCCAGCAG+GGG | 0.627294 | 3_2:+56524228 | None:intergenic |
| AGCATTGGAACTATGTGCCA+GGG | 0.629160 | 3_2:-56525537 | Msa0412770:intron |
| GAGTTGCAGAGATGCAACGG+CGG | 0.629475 | 3_2:+56528056 | None:intergenic |
| CGAGTTATATAAATCTTATG+CGG | 0.630317 | 3_2:-56524275 | Msa0412770:CDS |
| AAATCCAAATGGAACCCCAA+AGG | 0.640713 | 3_2:-56527953 | Msa0412770:intron |
| ACAATTTACAGATAAAACAT+CGG | 0.641994 | 3_2:+56526666 | None:intergenic |
| TCCTCGATGAAACGTTTCCG+TGG | 0.643422 | 3_2:-56524322 | Msa0412770:CDS |
| TGTGGTAAGCGGGAAAACAT+GGG | 0.643975 | 3_2:+56528280 | None:intergenic |
| TCACGACACACCATCGTAGA+CGG | 0.644067 | 3_2:+56527665 | None:intergenic |
| TATGTGGCTGTCCTGGAACT+GGG | 0.647137 | 3_2:-56527571 | Msa0412770:CDS |
| GTCTACAGCACCGTCTACGA+TGG | 0.655126 | 3_2:-56527675 | Msa0412770:CDS |
| ATGAAATGAAAACACTATCG+CGG | 0.656472 | 3_2:-56528321 | Msa0412770:exon |
| GGAGCAAATGAGGATTGTGA+AGG | 0.660637 | 3_2:-56527711 | Msa0412770:CDS |
| GGTGATGATTTGTCGAACGA+CGG | 0.678773 | 3_2:+56528015 | None:intergenic |
| ACTTGGGTTACACAAGACCC+TGG | 0.687722 | 3_2:-56526502 | Msa0412770:CDS |
| AATTCCATGATTCCAGCAGG+GGG | 0.690738 | 3_2:+56524229 | None:intergenic |
| CAAAACATATAGATCACCAG+TGG | 0.695627 | 3_2:-56524392 | Msa0412770:CDS |
| TCCACGGAAACGTTTCATCG+AGG | 0.729636 | 3_2:+56524321 | None:intergenic |
| TCGTGAGGAAGAGCAAAATG+TGG | 0.753694 | 3_2:-56527648 | Msa0412770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATGATATTTTTTTTTAAT+AGG | + | chr3_2:56526322-56526341 | None:intergenic | 10.0% |
| !! | ATATGTTTATTAAAACTTGT+GGG | - | chr3_2:56524754-56524773 | Msa0412770:intron | 15.0% |
| !!! | TTGTAATTGCATTTTATAAT+TGG | - | chr3_2:56524941-56524960 | Msa0412770:intron | 15.0% |
| !!! | TGTAATGATTTTTAAAAGAA+TGG | - | chr3_2:56524964-56524983 | Msa0412770:CDS | 15.0% |
| !! | TAAAAAACAAGAATTTGATA+TGG | - | chr3_2:56527065-56527084 | Msa0412770:intron | 15.0% |
| !! | TTTCATTAAATTCTTCTAAA+AGG | + | chr3_2:56527341-56527360 | None:intergenic | 15.0% |
| !! | TTCTGTATAATTAATGTTAT+AGG | - | chr3_2:56527451-56527470 | Msa0412770:intron | 15.0% |
| !!! | TTTTCATTGAATGATTGAAA+TGG | - | chr3_2:56524560-56524579 | Msa0412770:intron | 20.0% |
| !! | GTATAGTGTTATAGATTTAA+AGG | - | chr3_2:56524636-56524655 | Msa0412770:intron | 20.0% |
| !! | GATATGTTTATTAAAACTTG+TGG | - | chr3_2:56524753-56524772 | Msa0412770:intron | 20.0% |
| !! | TATGTTTATTAAAACTTGTG+GGG | - | chr3_2:56524755-56524774 | Msa0412770:intron | 20.0% |
| !! | TAAAATGCAATTACAAAAGA+GGG | + | chr3_2:56524937-56524956 | None:intergenic | 20.0% |
| !! | ATAAAATGCAATTACAAAAG+AGG | + | chr3_2:56524938-56524957 | None:intergenic | 20.0% |
| !!! | AATGATTTTTAAAAGAATGG+AGG | - | chr3_2:56524967-56524986 | Msa0412770:CDS | 20.0% |
| !! | ACAATTTACAGATAAAACAT+CGG | + | chr3_2:56525358-56525377 | None:intergenic | 20.0% |
| !! | ATTACATAAACAATGAGTAA+TGG | + | chr3_2:56525687-56525706 | None:intergenic | 20.0% |
| !! | TACTCATTGTTTATGTAATT+TGG | - | chr3_2:56525688-56525707 | Msa0412770:intron | 20.0% |
| !!! | ATTTCATTTTCAACTCATTA+AGG | - | chr3_2:56526058-56526077 | Msa0412770:CDS | 20.0% |
| !!! | AATGTAAGATTGTTGTTATA+CGG | - | chr3_2:56526250-56526269 | Msa0412770:CDS | 20.0% |
| !! | AAATAGCTATTAACATAAAC+AGG | + | chr3_2:56526421-56526440 | None:intergenic | 20.0% |
| !!! | GTTAGAGCTTTAATATATAT+TGG | - | chr3_2:56527267-56527286 | Msa0412770:intron | 20.0% |
| !! | TAATATATATTTCATGCTGA+AGG | + | chr3_2:56527385-56527404 | None:intergenic | 20.0% |
| !!! | CTACTAAATGATTTTTATAC+TGG | - | chr3_2:56527879-56527898 | Msa0412770:intron | 20.0% |
| !!! | TAAATGATTTTTATACTGGA+GGG | - | chr3_2:56527883-56527902 | Msa0412770:intron | 20.0% |
| !! | ATACATAAATTATTACTGCA+GGG | - | chr3_2:56527942-56527961 | Msa0412770:intron | 20.0% |
| ! | AAAATGAATGAGATTGAGAT+TGG | + | chr3_2:56523801-56523820 | None:intergenic | 25.0% |
| ! | AAAATGAAGAAAGATGAAAG+AGG | + | chr3_2:56523824-56523843 | None:intergenic | 25.0% |
| ! | AAACATATCAATTGCAAAAG+AGG | + | chr3_2:56524742-56524761 | None:intergenic | 25.0% |
| !! | GTGTTAAGTTTATTGATTGA+TGG | - | chr3_2:56524779-56524798 | Msa0412770:intron | 25.0% |
| !! | TCTAGTGAAAAAGTTTTTGA+AGG | - | chr3_2:56524823-56524842 | Msa0412770:intron | 25.0% |
| ! | TGTGTAAATCAGTGTTAATT+AGG | - | chr3_2:56524867-56524886 | Msa0412770:intron | 25.0% |
| !!! | TATTGAAGTATTGAAGTATG+TGG | - | chr3_2:56525050-56525069 | Msa0412770:CDS | 25.0% |
| !!! | ATTGAAGTATTGAAGTATGT+GGG | - | chr3_2:56525051-56525070 | Msa0412770:CDS | 25.0% |
| ! | TGCAAATGAAAATGTGTTAA+TGG | + | chr3_2:56525318-56525337 | None:intergenic | 25.0% |
| !! | ATTAACACATTTTCATTTGC+AGG | - | chr3_2:56525317-56525336 | Msa0412770:intron | 25.0% |
| !! | TTAACACATTTTCATTTGCA+GGG | - | chr3_2:56525318-56525337 | Msa0412770:intron | 25.0% |
| ! | CAATTTACAGATAAAACATC+GGG | + | chr3_2:56525357-56525376 | None:intergenic | 25.0% |
| !! | TACATCTGATATTTTCACAA+AGG | - | chr3_2:56525392-56525411 | Msa0412770:CDS | 25.0% |
| ! | TTAACAACACTTAGTTAACT+AGG | - | chr3_2:56525444-56525463 | Msa0412770:intron | 25.0% |
| ! | ATATGTACAAATCAAATCCA+GGG | + | chr3_2:56525639-56525658 | None:intergenic | 25.0% |
| ! | TATATGTACAAATCAAATCC+AGG | + | chr3_2:56525640-56525659 | None:intergenic | 25.0% |
| ! | ATAAGTATACATCTGGAAAA+TGG | + | chr3_2:56525832-56525851 | None:intergenic | 25.0% |
| !! | TTTTCCAGATGTATACTTAT+AGG | - | chr3_2:56525832-56525851 | Msa0412770:CDS | 25.0% |
| ! | TTTACCTATAAGTATACATC+TGG | + | chr3_2:56525839-56525858 | None:intergenic | 25.0% |
| ! | TCCTTAAGATTATTCAAGAA+AGG | - | chr3_2:56526224-56526243 | Msa0412770:CDS | 25.0% |
| ! | AGCAATATATCAAGATAAAG+TGG | + | chr3_2:56526281-56526300 | None:intergenic | 25.0% |
| ! | TTGCTACTATGAAAATATCA+TGG | - | chr3_2:56526296-56526315 | Msa0412770:intron | 25.0% |
| ! | TAAGCAAATATAAACGTATC+TGG | + | chr3_2:56526528-56526547 | None:intergenic | 25.0% |
| ! | TGAATTTGAACCTATAACAT+AGG | - | chr3_2:56526856-56526875 | Msa0412770:intron | 25.0% |
| !!! | TCTTGTTTTTTAACACAATC+CGG | + | chr3_2:56527057-56527076 | None:intergenic | 25.0% |
| ! | TTGATTCATTGTTAATAAGC+TGG | - | chr3_2:56527145-56527164 | Msa0412770:intron | 25.0% |
| ! | GTATATATCCTTAACTTAAG+TGG | - | chr3_2:56527171-56527190 | Msa0412770:intron | 25.0% |
| !! | ATCCTAAGAATAACTTTTGT+GGG | - | chr3_2:56527200-56527219 | Msa0412770:intron | 25.0% |
| ! | CTTATTCAGAAAAACTTTAG+TGG | - | chr3_2:56527290-56527309 | Msa0412770:intron | 25.0% |
| ! | CAGCATGAAATATATATTAC+TGG | - | chr3_2:56527386-56527405 | Msa0412770:intron | 25.0% |
| !! | ATATTACTGGTTGTCATAAA+AGG | - | chr3_2:56527399-56527418 | Msa0412770:intron | 25.0% |
| !!! | AGTATAATTTGTTGATGATG+TGG | + | chr3_2:56527675-56527694 | None:intergenic | 25.0% |
| ! | CGAGTTATATAAATCTTATG+CGG | - | chr3_2:56527746-56527765 | Msa0412770:intron | 25.0% |
| !! | CTAAATGATTTTTATACTGG+AGG | - | chr3_2:56527882-56527901 | Msa0412770:intron | 25.0% |
| ! | GATACATAAATTATTACTGC+AGG | - | chr3_2:56527941-56527960 | Msa0412770:intron | 25.0% |
| ! | GTAAAAATCAAATGATACAG+TGG | + | chr3_2:56528077-56528096 | None:intergenic | 25.0% |
| ! | ATACAAGCACAATAATCTAA+GGG | + | chr3_2:56528103-56528122 | None:intergenic | 25.0% |
| ! | AATACAAGCACAATAATCTA+AGG | + | chr3_2:56528104-56528123 | None:intergenic | 25.0% |
| ! | TTAGATTATTGTGCTTGTAT+TGG | - | chr3_2:56528103-56528122 | Msa0412770:CDS | 25.0% |
| ATGAAATGAAAACACTATCG+CGG | - | chr3_2:56523700-56523719 | Msa0412770:three_prime_UTR | 30.0% | |
| AATGAGATTGAGATTGGAAA+TGG | + | chr3_2:56523795-56523814 | None:intergenic | 30.0% | |
| !! | CGATTCGATTTGATTTTCAT+CGG | + | chr3_2:56524030-56524049 | None:intergenic | 30.0% |
| TGTGATGTGGAAATTATAGA+TGG | - | chr3_2:56524287-56524306 | Msa0412770:CDS | 30.0% | |
| GTGATGTGGAAATTATAGAT+GGG | - | chr3_2:56524288-56524307 | Msa0412770:CDS | 30.0% | |
| TGATGTGGAAATTATAGATG+GGG | - | chr3_2:56524289-56524308 | Msa0412770:CDS | 30.0% | |
| TGAAAGCGAATTTACTCAAT+TGG | - | chr3_2:56524495-56524514 | Msa0412770:intron | 30.0% | |
| GAAAGCGAATTTACTCAATT+GGG | - | chr3_2:56524496-56524515 | Msa0412770:intron | 30.0% | |
| ACATTGTTCTCTATTGGTAT+TGG | + | chr3_2:56525177-56525196 | None:intergenic | 30.0% | |
| CATATCACATTGTTCTCTAT+TGG | + | chr3_2:56525183-56525202 | None:intergenic | 30.0% | |
| TCAAACTGTATTACAGTCAA+GGG | + | chr3_2:56525903-56525922 | None:intergenic | 30.0% | |
| CTTATTGTGCTTGTTTATAC+AGG | - | chr3_2:56525940-56525959 | Msa0412770:intron | 30.0% | |
| GAGTAATTAAAAAGAGAGCA+AGG | + | chr3_2:56526143-56526162 | None:intergenic | 30.0% | |
| GCCTTTCTTGAATAATCTTA+AGG | + | chr3_2:56526228-56526247 | None:intergenic | 30.0% | |
| GTTATACTGAGTTGTAATGT+AGG | - | chr3_2:56526365-56526384 | Msa0412770:intron | 30.0% | |
| !! | GTAGATGCACTGATTTATAA+TGG | + | chr3_2:56526698-56526717 | None:intergenic | 30.0% |
| CAAATATTGCAACTTGCAAT+TGG | + | chr3_2:56526838-56526857 | None:intergenic | 30.0% | |
| ATGAATGTGTTCTGTATTTC+AGG | - | chr3_2:56526932-56526951 | Msa0412770:intron | 30.0% | |
| ATCTTAGACCACTTAAGTTA+AGG | + | chr3_2:56527182-56527201 | None:intergenic | 30.0% | |
| ! | GATCCTAAGAATAACTTTTG+TGG | - | chr3_2:56527199-56527218 | Msa0412770:intron | 30.0% |
| ATCCCACAAAAGTTATTCTT+AGG | + | chr3_2:56527205-56527224 | None:intergenic | 30.0% | |
| ! | GGTTGTCATAAAAGGTATAT+AGG | - | chr3_2:56527407-56527426 | Msa0412770:intron | 30.0% |
| GCAAACTGCTGAAATAAAAT+AGG | + | chr3_2:56527485-56527504 | None:intergenic | 30.0% | |
| !! | CATTCAATTTTGAGGATCTT+AGG | + | chr3_2:56527574-56527593 | None:intergenic | 30.0% |
| AAGATTTATATAACTCGCCA+AGG | + | chr3_2:56527743-56527762 | None:intergenic | 30.0% | |
| TCTTCTCAATTTATCATCTC+GGG | + | chr3_2:56527988-56528007 | None:intergenic | 30.0% | |
| CTCTTCTCAATTTATCATCT+CGG | + | chr3_2:56527989-56528008 | None:intergenic | 30.0% | |
| ! | ATATCACCTTCATCTAGTTT+GGG | + | chr3_2:56528017-56528036 | None:intergenic | 30.0% |
| AATATCACCTTCATCTAGTT+TGG | + | chr3_2:56528018-56528037 | None:intergenic | 30.0% | |
| !! | TGATATTACTTTTGCATTGC+AGG | - | chr3_2:56528031-56528050 | Msa0412770:CDS | 30.0% |
| ACACGAATGAATTTCATTTC+AGG | - | chr3_2:56528145-56528164 | Msa0412770:CDS | 30.0% | |
| CACGAATGAATTTCATTTCA+GGG | - | chr3_2:56528146-56528165 | Msa0412770:CDS | 30.0% | |
| GAAGACAATTTCGAAAAAAG+CGG | + | chr3_2:56528175-56528194 | None:intergenic | 30.0% | |
| TGAAATGAAAACACTATCGC+GGG | - | chr3_2:56523701-56523720 | Msa0412770:three_prime_UTR | 35.0% | |
| AAGATTGAGGGATTTGTAGT+TGG | + | chr3_2:56523767-56523786 | None:intergenic | 35.0% | |
| GAAATGGTGAAGAAGATTGA+GGG | + | chr3_2:56523779-56523798 | None:intergenic | 35.0% | |
| CATTTGGATTTAAGAGATGC+AGG | + | chr3_2:56524059-56524078 | None:intergenic | 35.0% | |
| CTGCATCTCTTAAATCCAAA+TGG | - | chr3_2:56524057-56524076 | Msa0412770:CDS | 35.0% | |
| ! | TGTTTTTCTTGTGTGTGATG+TGG | - | chr3_2:56524274-56524293 | Msa0412770:CDS | 35.0% |
| !! | TGGTGCTGGAATTTTGTAAA+GGG | - | chr3_2:56524393-56524412 | Msa0412770:CDS | 35.0% |
| !! | TGTTTTGAGCATGAAAAAGC+TGG | - | chr3_2:56524416-56524435 | Msa0412770:CDS | 35.0% |
| !! | GTTTTGAGCATGAAAAAGCT+GGG | - | chr3_2:56524417-56524436 | Msa0412770:CDS | 35.0% |
| TATCTGCCATAACATTCAGT+GGG | + | chr3_2:56525500-56525519 | None:intergenic | 35.0% | |
| TGAATGTTATGGCAGATACT+TGG | - | chr3_2:56525502-56525521 | Msa0412770:intron | 35.0% | |
| GAATGTTATGGCAGATACTT+GGG | - | chr3_2:56525503-56525522 | Msa0412770:intron | 35.0% | |
| !! | AAGTTCTGAAGTTGCTGTAA+GGG | + | chr3_2:56525565-56525584 | None:intergenic | 35.0% |
| TCTTACATCATGTTCGATGT+AGG | + | chr3_2:56525604-56525623 | None:intergenic | 35.0% | |
| TAAGAAACATATTCTTGCCC+TGG | - | chr3_2:56525619-56525638 | Msa0412770:intron | 35.0% | |
| TGGTAAGCATGAAAAGATCA+TGG | + | chr3_2:56525804-56525823 | None:intergenic | 35.0% | |
| ACATCTGGAAAATGGAAAAG+TGG | + | chr3_2:56525824-56525843 | None:intergenic | 35.0% | |
| CTCAAACTGTATTACAGTCA+AGG | + | chr3_2:56525904-56525923 | None:intergenic | 35.0% | |
| CAATTTAATGCAGTAAGCCT+TGG | + | chr3_2:56526003-56526022 | None:intergenic | 35.0% | |
| ! | GAGGACAGCTTCATTTTATA+AGG | + | chr3_2:56526100-56526119 | None:intergenic | 35.0% |
| TTACTCCATTTATCCGTTTC+AGG | - | chr3_2:56526157-56526176 | Msa0412770:intron | 35.0% | |
| ! | AGCCTACTGTTGTAACTTTT+CGG | - | chr3_2:56526182-56526201 | Msa0412770:intron | 35.0% |
| ATAGTTCCAATGCTTGATGT+TGG | + | chr3_2:56526478-56526497 | None:intergenic | 35.0% | |
| GAAATGCTCTTTGTATATGC+AGG | - | chr3_2:56526638-56526657 | Msa0412770:CDS | 35.0% | |
| ATGCAAGACACCTATGTTAT+AGG | + | chr3_2:56526869-56526888 | None:intergenic | 35.0% | |
| TAACATAGGTGTCTTGCATT+TGG | - | chr3_2:56526870-56526889 | Msa0412770:intron | 35.0% | |
| TGCTTGCAATTTGAATGCTT+TGG | - | chr3_2:56526993-56527012 | Msa0412770:intron | 35.0% | |
| ! | TGTAGGAAGATTTTGTTCTG+AGG | + | chr3_2:56527031-56527050 | None:intergenic | 35.0% |
| ATGGCAATGTGAGTAACTAT+AGG | + | chr3_2:56527119-56527138 | None:intergenic | 35.0% | |
| AACAATGAATCAACCATCGA+TGG | + | chr3_2:56527138-56527157 | None:intergenic | 35.0% | |
| ! | TAAAGCTCTAACTAAGCACA+AGG | + | chr3_2:56527259-56527278 | None:intergenic | 35.0% |
| AGATCCTCAAAATTGAATGC+AGG | - | chr3_2:56527575-56527594 | Msa0412770:CDS | 35.0% | |
| ! | CTTACCTGCATTCAATTTTG+AGG | + | chr3_2:56527582-56527601 | None:intergenic | 35.0% |
| CTCAAAATTGAATGCAGGTA+AGG | - | chr3_2:56527580-56527599 | Msa0412770:CDS | 35.0% | |
| ! | CACTGGTGATCTATATGTTT+TGG | + | chr3_2:56527631-56527650 | None:intergenic | 35.0% |
| CAAAACATATAGATCACCAG+TGG | - | chr3_2:56527629-56527648 | Msa0412770:CDS | 35.0% | |
| AAAATTCCATGATTCCAGCA+GGG | + | chr3_2:56527797-56527816 | None:intergenic | 35.0% | |
| AGAAATTCATGACAGATACC+TGG | + | chr3_2:56527845-56527864 | None:intergenic | 35.0% | |
| GGGATTGTCCTAGTTTAATA+AGG | + | chr3_2:56527968-56527987 | None:intergenic | 35.0% | |
| ! | CTTGTATTGGTAGTTACTCA+TGG | - | chr3_2:56528116-56528135 | Msa0412770:CDS | 35.0% |
| TTAGAAGCAAGAGATGTTAG+AGG | - | chr3_2:56528227-56528246 | Msa0412770:CDS | 35.0% | |
| ! | TTTGTAGTTGGTGTGGTAAG+CGG | + | chr3_2:56523755-56523774 | None:intergenic | 40.0% |
| GGAAATGGTGAAGAAGATTG+AGG | + | chr3_2:56523780-56523799 | None:intergenic | 40.0% | |
| CGTTTGGAAGATGCAATTGA+AGG | + | chr3_2:56523882-56523901 | None:intergenic | 40.0% | |
| TGGATTTAAGAGATGCAGGT+TGG | + | chr3_2:56524055-56524074 | None:intergenic | 40.0% | |
| AAATCCAAATGGAACCCCAA+AGG | - | chr3_2:56524068-56524087 | Msa0412770:intron | 40.0% | |
| !! | TTTACCTTTGGGGTTCCATT+TGG | + | chr3_2:56524075-56524094 | None:intergenic | 40.0% |
| ! | AGTGACTGACTTTACCTTTG+GGG | + | chr3_2:56524085-56524104 | None:intergenic | 40.0% |
| ! | GAGTGACTGACTTTACCTTT+GGG | + | chr3_2:56524086-56524105 | None:intergenic | 40.0% |
| ! | TGAGTGACTGACTTTACCTT+TGG | + | chr3_2:56524087-56524106 | None:intergenic | 40.0% |
| AATTAAACGTGTCAGCTCAG+TGG | + | chr3_2:56524240-56524259 | None:intergenic | 40.0% | |
| TTATAGATGGGGAGCAAATG+AGG | - | chr3_2:56524300-56524319 | Msa0412770:CDS | 40.0% | |
| !! | GTGGTGCTGGAATTTTGTAA+AGG | - | chr3_2:56524392-56524411 | Msa0412770:CDS | 40.0% |
| GCTGGGAGTCTTTATATATG+TGG | - | chr3_2:56524434-56524453 | Msa0412770:intron | 40.0% | |
| CTTTATATATGTGGCTGTCC+TGG | - | chr3_2:56524443-56524462 | Msa0412770:intron | 40.0% | |
| TAAAAGAATGGAGGACTCGT+TGG | - | chr3_2:56524976-56524995 | Msa0412770:CDS | 40.0% | |
| GATTGATGCATTCATGTCGA+TGG | - | chr3_2:56525090-56525109 | Msa0412770:intron | 40.0% | |
| ! | ACACATTTTCATTTGCAGGG+AGG | - | chr3_2:56525321-56525340 | Msa0412770:intron | 40.0% |
| GTCTAACCCACTGAATGTTA+TGG | - | chr3_2:56525491-56525510 | Msa0412770:intron | 40.0% | |
| GTATCTGCCATAACATTCAG+TGG | + | chr3_2:56525501-56525520 | None:intergenic | 40.0% | |
| !! | CAAGTTCTGAAGTTGCTGTA+AGG | + | chr3_2:56525566-56525585 | None:intergenic | 40.0% |
| !! | GAGTAATGGACAATCATACG+TGG | + | chr3_2:56525673-56525692 | None:intergenic | 40.0% |
| ! | TTACAGTCAAGGGTATGACA+AGG | + | chr3_2:56525893-56525912 | None:intergenic | 40.0% |
| ! | TAGCTGATCGATTTCTTCCA+AGG | - | chr3_2:56525983-56526002 | Msa0412770:intron | 40.0% |
| CCAATCATGTACACAAGTAG+AGG | + | chr3_2:56526119-56526138 | None:intergenic | 40.0% | |
| CCTCTACTTGTGTACATGAT+TGG | - | chr3_2:56526116-56526135 | Msa0412770:intron | 40.0% | |
| ! | GCCTACTGTTGTAACTTTTC+GGG | - | chr3_2:56526183-56526202 | Msa0412770:intron | 40.0% |
| !! | AGCTATTTTGTCTCACCATC+AGG | - | chr3_2:56526433-56526452 | Msa0412770:CDS | 40.0% |
| TGATGTTGGAAGACGATGTA+AGG | + | chr3_2:56526464-56526483 | None:intergenic | 40.0% | |
| CAATGTTGTTGTACTTACCC+TGG | + | chr3_2:56526504-56526523 | None:intergenic | 40.0% | |
| ACAAAATCTTCCTACAGCAC+CGG | - | chr3_2:56527035-56527054 | Msa0412770:intron | 40.0% | |
| GGTCTAAGTTTCAACTCAGT+TGG | - | chr3_2:56527311-56527330 | Msa0412770:intron | 40.0% | |
| TGAGGATCTTAGGCTACAAA+CGG | + | chr3_2:56527564-56527583 | None:intergenic | 40.0% | |
| GCAGGTAAGGATTGATCATA+TGG | - | chr3_2:56527593-56527612 | Msa0412770:CDS | 40.0% | |
| AACATATAGATCACCAGTGG+TGG | - | chr3_2:56527632-56527651 | Msa0412770:CDS | 40.0% | |
| ATGATGTGGCAGAGATTGTA+TGG | + | chr3_2:56527661-56527680 | None:intergenic | 40.0% | |
| AAATTCCATGATTCCAGCAG+GGG | + | chr3_2:56527796-56527815 | None:intergenic | 40.0% | |
| GAAAATTCCATGATTCCAGC+AGG | + | chr3_2:56527798-56527817 | None:intergenic | 40.0% | |
| CAAATGATACAGTGGCTCAA+GGG | + | chr3_2:56528069-56528088 | None:intergenic | 40.0% | |
| TCAAATGATACAGTGGCTCA+AGG | + | chr3_2:56528070-56528089 | None:intergenic | 40.0% | |
| TGTGGTAAGCGGGAAAACAT+GGG | + | chr3_2:56523744-56523763 | None:intergenic | 45.0% | |
| ! | TTGTAGTTGGTGTGGTAAGC+GGG | + | chr3_2:56523754-56523773 | None:intergenic | 45.0% |
| ! | TGAGGGATTTGTAGTTGGTG+TGG | + | chr3_2:56523762-56523781 | None:intergenic | 45.0% |
| ACGGATGAGGTGACTGAATT+GGG | + | chr3_2:56523990-56524009 | None:intergenic | 45.0% | |
| ! | GGTGATGATTTGTCGAACGA+CGG | + | chr3_2:56524009-56524028 | None:intergenic | 45.0% |
| GGAGCAAATGAGGATTGTGA+AGG | - | chr3_2:56524310-56524329 | Msa0412770:CDS | 45.0% | |
| GCAAATGAGGATTGTGAAGG+AGG | - | chr3_2:56524313-56524332 | Msa0412770:CDS | 45.0% | |
| TCGTGAGGAAGAGCAAAATG+TGG | - | chr3_2:56524373-56524392 | Msa0412770:CDS | 45.0% | |
| AACTGGGAAATCGTTGTCGA+TGG | - | chr3_2:56524466-56524485 | Msa0412770:intron | 45.0% | |
| TTTACTCAATTGGGCTGCAG+AGG | - | chr3_2:56524505-56524524 | Msa0412770:intron | 45.0% | |
| ACAGATAAAACATCGGGCAG+CGG | + | chr3_2:56525351-56525370 | None:intergenic | 45.0% | |
| ACACAAGACCCTGGCAAAAA+AGG | - | chr3_2:56525528-56525547 | Msa0412770:intron | 45.0% | |
| CACAAGACCCTGGCAAAAAA+GGG | - | chr3_2:56525529-56525548 | Msa0412770:intron | 45.0% | |
| GCTTGCCTGAAACGGATAAA+TGG | + | chr3_2:56526165-56526184 | None:intergenic | 45.0% | |
| AACAGTAGGCTTGCCTGAAA+CGG | + | chr3_2:56526173-56526192 | None:intergenic | 45.0% | |
| GCCCGAAAAGTTACAACAGT+AGG | + | chr3_2:56526187-56526206 | None:intergenic | 45.0% | |
| CGATGTAAGGAAGTTCCTGA+TGG | + | chr3_2:56526451-56526470 | None:intergenic | 45.0% | |
| CGTCTTCCAACATCAAGCAT+TGG | - | chr3_2:56526469-56526488 | Msa0412770:CDS | 45.0% | |
| !! | AAGCATTGGAACTATGTGCC+AGG | - | chr3_2:56526483-56526502 | Msa0412770:CDS | 45.0% |
| ! | AGCATTGGAACTATGTGCCA+GGG | - | chr3_2:56526484-56526503 | Msa0412770:CDS | 45.0% |
| !! | TTAACACAATCCGGTGCTGT+AGG | + | chr3_2:56527048-56527067 | None:intergenic | 45.0% |
| GTTACTCACATTGCCATCGA+TGG | - | chr3_2:56527122-56527141 | Msa0412770:intron | 45.0% | |
| TGCAAGGGAAGAGAAAGGAA+AGG | + | chr3_2:56527234-56527253 | None:intergenic | 45.0% | |
| ACTAAGCACAAGGTGTGCAA+GGG | + | chr3_2:56527249-56527268 | None:intergenic | 45.0% | |
| AACTAAGCACAAGGTGTGCA+AGG | + | chr3_2:56527250-56527269 | None:intergenic | 45.0% | |
| TACAAACGGGAGAGGATTAC+AGG | + | chr3_2:56527550-56527569 | None:intergenic | 45.0% | |
| GAGGATCTTAGGCTACAAAC+GGG | + | chr3_2:56527563-56527582 | None:intergenic | 45.0% | |
| GATTGTATGGTATCCACCAC+TGG | + | chr3_2:56527648-56527667 | None:intergenic | 45.0% | |
| TTGAGTCTTTCTTGGCTCCA+CGG | + | chr3_2:56527719-56527738 | None:intergenic | 45.0% | |
| GCCAAGAAAGACTCAATCCT+TGG | - | chr3_2:56527723-56527742 | Msa0412770:intron | 45.0% | |
| GCCAAGGATTGAGTCTTTCT+TGG | + | chr3_2:56527727-56527746 | None:intergenic | 45.0% | |
| AATTCCATGATTCCAGCAGG+GGG | + | chr3_2:56527795-56527814 | None:intergenic | 45.0% | |
| ! | GTGCAGAGTGTTAAATGACC+AGG | - | chr3_2:56527824-56527843 | Msa0412770:intron | 45.0% |
| TATACTGGAGGGCTTTCTTG+AGG | - | chr3_2:56527894-56527913 | Msa0412770:intron | 45.0% | |
| AGGGCTTTCTTGAGGCAAAA+TGG | - | chr3_2:56527902-56527921 | Msa0412770:intron | 45.0% | |
| !! | CTGCAGGGCCTTATTAAACT+AGG | - | chr3_2:56527957-56527976 | Msa0412770:CDS | 45.0% |
| GTGACACCCAAACTAGATGA+AGG | - | chr3_2:56528008-56528027 | Msa0412770:CDS | 45.0% | |
| TCTTCAGTGATCCTGCTTAC+TGG | - | chr3_2:56528190-56528209 | Msa0412770:CDS | 45.0% | |
| !! | TAAAATAAAAGAAAAAATTA+TGG | + | chr3_2:56526813-56526832 | None:intergenic | 5.0% |
| GTGTGGTAAGCGGGAAAACA+TGG | + | chr3_2:56523745-56523764 | None:intergenic | 50.0% | |
| GGGAGATCTGAATCTGCGTT+TGG | + | chr3_2:56523898-56523917 | None:intergenic | 50.0% | |
| TGGGAGTTGCAGAGATGCAA+CGG | + | chr3_2:56523971-56523990 | None:intergenic | 50.0% | |
| GACGGATGAGGTGACTGAAT+TGG | + | chr3_2:56523991-56524010 | None:intergenic | 50.0% | |
| GATTTGTCGAACGACGGATG+AGG | + | chr3_2:56524003-56524022 | None:intergenic | 50.0% | |
| TCACGACACACCATCGTAGA+CGG | + | chr3_2:56524359-56524378 | None:intergenic | 50.0% | |
| GGAAGAGCAAAATGTGGTGC+TGG | - | chr3_2:56524379-56524398 | Msa0412770:CDS | 50.0% | |
| ATATGTGGCTGTCCTGGAAC+TGG | - | chr3_2:56524449-56524468 | Msa0412770:intron | 50.0% | |
| TATGTGGCTGTCCTGGAACT+GGG | - | chr3_2:56524450-56524469 | Msa0412770:intron | 50.0% | |
| GACAACGATTTCCCAGTTCC+AGG | + | chr3_2:56524464-56524483 | None:intergenic | 50.0% | |
| ACTTGGGTTACACAAGACCC+TGG | - | chr3_2:56525519-56525538 | Msa0412770:intron | 50.0% | |
| ACCCTGGCAAAAAAGGGTTC+AGG | - | chr3_2:56525535-56525554 | Msa0412770:intron | 50.0% | |
| !!! | GCCTGAACCCTTTTTTGCCA+GGG | + | chr3_2:56525539-56525558 | None:intergenic | 50.0% |
| !!! | TGCCTGAACCCTTTTTTGCC+AGG | + | chr3_2:56525540-56525559 | None:intergenic | 50.0% |
| ATGGAGCACAGCTCTGTCTT+TGG | + | chr3_2:56525785-56525804 | None:intergenic | 50.0% | |
| CAGAAAGTTGCTGCAGCTTC+TGG | - | chr3_2:56526607-56526626 | Msa0412770:intron | 50.0% | |
| AGGTGTGCAAGGGAAGAGAA+AGG | + | chr3_2:56527239-56527258 | None:intergenic | 50.0% | |
| TCTTAGGCTACAAACGGGAG+AGG | + | chr3_2:56527558-56527577 | None:intergenic | 50.0% | |
| TCCTCGATGAAACGTTTCCG+TGG | - | chr3_2:56527699-56527718 | Msa0412770:CDS | 50.0% | |
| TCCACGGAAACGTTTCATCG+AGG | + | chr3_2:56527703-56527722 | None:intergenic | 50.0% | |
| TCATCACTAATTCCCCCTGC+TGG | - | chr3_2:56527780-56527799 | Msa0412770:intron | 50.0% | |
| AATTCCCCCTGCTGGAATCA+TGG | - | chr3_2:56527788-56527807 | Msa0412770:intron | 50.0% | |
| ! | GTGATCCTGCTTACTGGTTG+TGG | - | chr3_2:56528196-56528215 | Msa0412770:CDS | 50.0% |
| TGTTGCCACAACCAGTAAGC+AGG | + | chr3_2:56528204-56528223 | None:intergenic | 50.0% | |
| GGAGAAGTGGTGGTTGGGAT+GGG | + | chr3_2:56523927-56523946 | None:intergenic | 55.0% | |
| AGGAGAAGTGGTGGTTGGGA+TGG | + | chr3_2:56523928-56523947 | None:intergenic | 55.0% | |
| TGGGAGGAGAAGTGGTGGTT+GGG | + | chr3_2:56523932-56523951 | None:intergenic | 55.0% | |
| AGTTGCAGAGATGCAACGGC+GGG | + | chr3_2:56523967-56523986 | None:intergenic | 55.0% | |
| GAGTTGCAGAGATGCAACGG+CGG | + | chr3_2:56523968-56523987 | None:intergenic | 55.0% | |
| GTCTACAGCACCGTCTACGA+TGG | - | chr3_2:56524346-56524365 | Msa0412770:CDS | 55.0% | |
| GTCTACGATGGTGTGTCGTG+AGG | - | chr3_2:56524358-56524377 | Msa0412770:CDS | 55.0% | |
| AGTGGTGGTTGGGATGGGTG+TGG | + | chr3_2:56523922-56523941 | None:intergenic | 60.0% | |
| GTGGGAGGAGAAGTGGTGGT+TGG | + | chr3_2:56523933-56523952 | None:intergenic | 60.0% | |
| TTTGCGGGTGGGAGGAGAAG+TGG | + | chr3_2:56523940-56523959 | None:intergenic | 60.0% | |
| TTGCAGAGATGCAACGGCGG+GGG | + | chr3_2:56523965-56523984 | None:intergenic | 60.0% | |
| GTTGCAGAGATGCAACGGCG+GGG | + | chr3_2:56523966-56523985 | None:intergenic | 60.0% | |
| GTGGTTGGGATGGGTGTGGC+GGG | + | chr3_2:56523918-56523937 | None:intergenic | 65.0% | |
| GGTGGTTGGGATGGGTGTGG+CGG | + | chr3_2:56523919-56523938 | None:intergenic | 65.0% | |
| TGCAACGGCGGGGGGATTTG+CGG | + | chr3_2:56523956-56523975 | None:intergenic | 65.0% | |
| TGCAGAGATGCAACGGCGGG+GGG | + | chr3_2:56523964-56523983 | None:intergenic | 65.0% | |
| GCGGGTGGGAGGAGAAGTGG+TGG | + | chr3_2:56523937-56523956 | None:intergenic | 70.0% | |
| GCAACGGCGGGGGGATTTGC+GGG | + | chr3_2:56523955-56523974 | None:intergenic | 70.0% | |
| CGGGGGGATTTGCGGGTGGG+AGG | + | chr3_2:56523948-56523967 | None:intergenic | 75.0% | |
| CGGCGGGGGGATTTGCGGGT+GGG | + | chr3_2:56523951-56523970 | None:intergenic | 75.0% | |
| ACGGCGGGGGGATTTGCGGG+TGG | + | chr3_2:56523952-56523971 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 56523699 | 56528344 | 56523699 | ID=Msa0412770;Name=Msa0412770 |
| chr3_2 | mRNA | 56523699 | 56528344 | 56523699 | ID=Msa0412770-mRNA-1;Parent=Msa0412770;Name=Msa0412770-mRNA-1;_AED=0.13;_eAED=0.13;_QI=6|1|1|1|1|1|13|145|542 |
| chr3_2 | exon | 56523699 | 56523876 | 56523699 | ID=Msa0412770-mRNA-1:exon:11553;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56523991 | 56524080 | 56523991 | ID=Msa0412770-mRNA-1:exon:11552;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56524198 | 56524446 | 56524198 | ID=Msa0412770-mRNA-1:exon:11551;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56524957 | 56525089 | 56524957 | ID=Msa0412770-mRNA-1:exon:11550;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56525384 | 56525433 | 56525384 | ID=Msa0412770-mRNA-1:exon:11549;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56525538 | 56525588 | 56525538 | ID=Msa0412770-mRNA-1:exon:11548;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56525791 | 56525864 | 56525791 | ID=Msa0412770-mRNA-1:exon:11547;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56526022 | 56526081 | 56526022 | ID=Msa0412770-mRNA-1:exon:11546;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56526190 | 56526296 | 56526190 | ID=Msa0412770-mRNA-1:exon:11545;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56526426 | 56526526 | 56526426 | ID=Msa0412770-mRNA-1:exon:11544;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56526630 | 56526704 | 56526630 | ID=Msa0412770-mRNA-1:exon:11543;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56527517 | 56527737 | 56527517 | ID=Msa0412770-mRNA-1:exon:11542;Parent=Msa0412770-mRNA-1 |
| chr3_2 | exon | 56527954 | 56528344 | 56527954 | ID=Msa0412770-mRNA-1:exon:11541;Parent=Msa0412770-mRNA-1 |
| chr3_2 | five_prime_UTR | 56528339 | 56528344 | 56528339 | ID=Msa0412770-mRNA-1:five_prime_utr;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56527954 | 56528338 | 56527954 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56527517 | 56527737 | 56527517 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56526630 | 56526704 | 56526630 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56526426 | 56526526 | 56526426 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56526190 | 56526296 | 56526190 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56526022 | 56526081 | 56526022 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56525791 | 56525864 | 56525791 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56525538 | 56525588 | 56525538 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56525384 | 56525433 | 56525384 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56524957 | 56525089 | 56524957 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56524198 | 56524446 | 56524198 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56523991 | 56524080 | 56523991 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | CDS | 56523844 | 56523876 | 56523844 | ID=Msa0412770-mRNA-1:cds;Parent=Msa0412770-mRNA-1 |
| chr3_2 | three_prime_UTR | 56523699 | 56523843 | 56523699 | ID=Msa0412770-mRNA-1:three_prime_utr;Parent=Msa0412770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
