AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0714520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714520 MtrunA17_Chr5g0401741 96.707 334 9 2 1 333 1 333 0.0 668
Msa0714520 MtrunA17_Chr3g0092651 58.657 283 94 5 1 276 1 267 1.54e-114 333
Msa0714520 MtrunA17_Chr4g0060561 57.193 285 94 5 1 276 1 266 2.45e-109 320
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714520 AT5G67270.1 61.494 348 97 10 1 332 1 327 6.30e-142 404
Msa0714520 AT3G47690.1 54.915 295 110 5 1 291 1 276 8.15e-112 326
Msa0714520 AT5G62500.1 57.194 278 97 5 1 272 1 262 4.81e-108 317

Find 84 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAGGAAGAAAACTATTT+TGG 0.194254 5_1:+7177195 Msa0714520:three_prime_UTR
TATAATCATAGCTATATTTC+TGG 0.208265 5_1:-7177349 None:intergenic
TATAATCCAGTGTTATTTCT+TGG 0.229851 5_1:+7177384 Msa0714520:three_prime_UTR
TACTGTGATTCTGTTAATTC+TGG 0.239455 5_1:+7175587 Msa0714520:CDS
AGGAAGACCGTTGGATAATC+TGG 0.313939 5_1:+7175541 Msa0714520:CDS
AATTGGAACCTCTTCGACTT+TGG 0.334561 5_1:-7175109 None:intergenic
AGAGAGATGTGCAGGGGAGG+AGG 0.344828 5_1:+7176393 Msa0714520:CDS
TCCTCAGAAACCTCAGCAAT+GGG 0.351899 5_1:-7177022 None:intergenic
GCAACAGCGGCGACGGCAGC+AGG 0.357887 5_1:-7176570 None:intergenic
GGCGACGAACATTGGAATAA+TGG 0.371602 5_1:+7175017 Msa0714520:CDS
ACCGGTGAATGTTCTACTTC+AGG 0.375265 5_1:-7176798 None:intergenic
TTTCGAATGTTCACCATAAC+GGG 0.386900 5_1:+7177146 Msa0714520:CDS
TCGTCTAGGAGACAAATTAT+TGG 0.405029 5_1:-7177110 None:intergenic
TCATGAGAGGTGACCCGTTA+TGG 0.407788 5_1:-7177159 None:intergenic
TTGTTTCAGTTATAATCCTT+TGG 0.411329 5_1:+7176365 Msa0714520:intron
CTTCTTGATGCCGCTCATCC+TGG 0.411853 5_1:+7175276 Msa0714520:CDS
ATTACCAACAGCTATACTTC+TGG 0.412239 5_1:-7177320 None:intergenic
GAGATGTGCAGGGGAGGAGG+AGG 0.415206 5_1:+7176396 Msa0714520:CDS
TTATGCATCGGAACAATTCC+AGG 0.415843 5_1:-7175294 None:intergenic
AACCCTGAGGTTGATGCTGC+TGG 0.418093 5_1:+7177085 Msa0714520:CDS
AGCTCCTGCATATGATCAAC+AGG 0.424134 5_1:+7176596 Msa0714520:CDS
AGCTGCAGCAACAGCGGCGA+CGG 0.428122 5_1:-7176577 None:intergenic
AGGAGAGAGATGTGCAGGGG+AGG 0.437578 5_1:+7176390 Msa0714520:CDS
TGGAGAGGAGAGAGATGTGC+AGG 0.442889 5_1:+7176385 Msa0714520:CDS
TTCCTTCTCAAGACTATCAA+TGG 0.443572 5_1:-7176724 None:intergenic
TACTGCAAACCATGCAAATC+CGG 0.449249 5_1:+7176527 Msa0714520:CDS
TATGCTTACTGCTGGTCTAC+AGG 0.461063 5_1:+7176982 Msa0714520:CDS
GCAGATCTGAAATCCTCTCT+TGG 0.463193 5_1:+7175058 Msa0714520:CDS
ACCTCAGCAATGGGGCTCAA+TGG 0.463460 5_1:-7177013 None:intergenic
GTTTCGAATGTTCACCATAA+CGG 0.473409 5_1:+7177145 Msa0714520:CDS
GTGCCAGCAGCATCAACCTC+AGG 0.484253 5_1:-7177088 None:intergenic
GTAGAACCACCCTTGTTTGA+GGG 0.498601 5_1:-7176453 None:intergenic
TGCAGGAGCTGCAGCAACAG+CGG 0.499878 5_1:-7176583 None:intergenic
AGTAGAACCACCCTTGTTTG+AGG 0.504441 5_1:-7176454 None:intergenic
CAACAAACTCAAAATCACTA+AGG 0.505654 5_1:+7175383 Msa0714520:CDS
CTCCTCAGAAACCTCAGCAA+TGG 0.518364 5_1:-7177023 None:intergenic
TGATGACAATGGATCTGAGT+TGG 0.524539 5_1:+7176946 Msa0714520:CDS
ATCAAGAAGCTGACAATGAA+CGG 0.527675 5_1:-7175262 None:intergenic
CGGTGGTTGCAAAAGCTGCT+AGG 0.530783 5_1:+7176547 Msa0714520:CDS
CTGTTAATTCTGGACAGCAC+AGG 0.531391 5_1:+7175597 Msa0714520:CDS
TGGAATTGTTCCGATGCATA+AGG 0.531970 5_1:+7175296 Msa0714520:CDS
GCATATTGAGGTTAGCAAGC+TGG 0.533221 5_1:+7175514 Msa0714520:intron
CCCCATTGCTGAGGTTTCTG+AGG 0.538400 5_1:+7177021 Msa0714520:CDS
AGCAGCATCAACCTCAGGGT+TGG 0.539714 5_1:-7177083 None:intergenic
CACTCTCAACCCTCAAACAA+GGG 0.547676 5_1:+7176444 Msa0714520:CDS
CGAGCAGTGTGGGAAGATTG+AGG 0.547920 5_1:-7176489 None:intergenic
ATCATTCCTTCGAGCAGTGT+GGG 0.553545 5_1:-7176499 None:intergenic
ATCCATTGATAGTCTTGAGA+AGG 0.556956 5_1:+7176722 Msa0714520:CDS
TTGCAACCACCGGATTTGCA+TGG 0.557039 5_1:-7176536 None:intergenic
ACACTCTCAACCCTCAAACA+AGG 0.557498 5_1:+7176443 Msa0714520:CDS
GGAGAGGAGAGAGATGTGCA+GGG 0.562837 5_1:+7176386 Msa0714520:CDS
GCCATTGAGCCCCATTGCTG+AGG 0.565737 5_1:+7177012 Msa0714520:CDS
CAATCTCTCCAAAGTCGAAG+AGG 0.568906 5_1:+7175101 Msa0714520:CDS
CACATCTCTCTCCTCTCCAA+AGG 0.574177 5_1:-7176381 None:intergenic
GAGAGGAGAGAGATGTGCAG+GGG 0.575095 5_1:+7176387 Msa0714520:CDS
GAGGTTAGCAAGCTGGTGAA+AGG 0.576068 5_1:+7175521 Msa0714520:CDS
AGTACCTGTTGATCATATGC+AGG 0.577474 5_1:-7176600 None:intergenic
TCGAAATTCACCTTATGCAT+CGG 0.580314 5_1:-7175306 None:intergenic
GGTCACCTCTCATGATCTGA+AGG 0.580315 5_1:+7177167 Msa0714520:CDS
GCTCAAGCTATGCTTACTGC+TGG 0.581689 5_1:+7176974 Msa0714520:CDS
ATGGATGCTGCATACTTCGT+CGG 0.586038 5_1:+7175036 Msa0714520:CDS
ATCATAGCTATATTTCTGGA+TGG 0.588246 5_1:-7177345 None:intergenic
ACATCAGAAAGCCTTCGTCT+AGG 0.591311 5_1:-7177124 None:intergenic
TCCTGAAGTAGAACATTCAC+CGG 0.595180 5_1:+7176797 Msa0714520:CDS
TGAGATGATTCAGAATTACA+AGG 0.599247 5_1:+7175344 Msa0714520:CDS
TCAGTTATAATCCTTTGGAG+AGG 0.609241 5_1:+7176370 Msa0714520:intron
GCTGGTGAAAGGAAGACCGT+TGG 0.609936 5_1:+7175532 Msa0714520:CDS
AATCTTCCCACACTGCTCGA+AGG 0.610802 5_1:+7176493 Msa0714520:CDS
CACAAGCCAAGAAATAACAC+TGG 0.613143 5_1:-7177390 None:intergenic
TGCCAGCAGCATCAACCTCA+GGG 0.613718 5_1:-7177087 None:intergenic
TAATCCAGAAGTATAGCTGT+TGG 0.622454 5_1:+7177316 Msa0714520:three_prime_UTR
CATCATTCCTTCGAGCAGTG+TGG 0.625952 5_1:-7176500 None:intergenic
CGGAACAATTCCAGGATGAG+CGG 0.629441 5_1:-7175286 None:intergenic
ATAATTTGTCTCCTAGACGA+AGG 0.644751 5_1:+7177113 Msa0714520:CDS
TGCAAACCATGCAAATCCGG+TGG 0.660574 5_1:+7176530 Msa0714520:CDS
GAGTTGAATTGATCCAAGAG+AGG 0.661001 5_1:-7175071 None:intergenic
TTGTATGCTACTGATGACAA+TGG 0.664708 5_1:+7176935 Msa0714520:CDS
ATAATCTGGAGTTCATGCAA+TGG 0.681963 5_1:+7175555 Msa0714520:CDS
TCTCAACCCTCAAACAAGGG+TGG 0.685605 5_1:+7176447 Msa0714520:CDS
CCTCAGAAACCTCAGCAATG+GGG 0.699654 5_1:-7177021 None:intergenic
AAAGAACTTTGCCAACCCTG+AGG 0.702193 5_1:+7177072 Msa0714520:CDS
ATGAACTCCAGATTATCCAA+CGG 0.710109 5_1:-7175548 None:intergenic
AGGGTGGTTCTACTTCACAC+AGG 0.720858 5_1:+7176463 Msa0714520:CDS
GCAGTGTGGGAAGATTGAGG+AGG 0.731744 5_1:-7176486 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTTTTTATATTGATTA+GGG + chr5_1:7177251-7177270 Msa0714520:three_prime_UTR 10.0%
!!! TTATTTTTCATTATTTTTGT+TGG + chr5_1:7177432-7177451 Msa0714520:three_prime_UTR 10.0%
!! AAAATTGAAGAAAATTGAAT+CGG - chr5_1:7175138-7175157 None:intergenic 15.0%
!! AAATTAAGAAAATCATGAAT+CGG - chr5_1:7175469-7175488 None:intergenic 15.0%
!!! TATCTTTGAATTTGATAATT+AGG + chr5_1:7175709-7175728 Msa0714520:intron 15.0%
!!! ATGTTTTAATGAAAATTTTC+TGG + chr5_1:7175811-7175830 Msa0714520:intron 15.0%
!! GATATTGGTATTAATTATAT+TGG + chr5_1:7176173-7176192 Msa0714520:intron 15.0%
!! TATTAATTATATTGGATTTG+AGG + chr5_1:7176181-7176200 Msa0714520:intron 15.0%
!!! CAATGTTTTTTATATTGATT+AGG + chr5_1:7177250-7177269 Msa0714520:three_prime_UTR 15.0%
!!! ATGTTTTTTATATTGATTAG+GGG + chr5_1:7177252-7177271 Msa0714520:three_prime_UTR 15.0%
!!! TTTTTCGTTGATTTTGTTTT+AGG + chr5_1:7175163-7175182 Msa0714520:intron 20.0%
!!! TGAATTGTGAAATTTTGTTT+AGG + chr5_1:7175227-7175246 Msa0714520:intron 20.0%
!!! TGATAATTAGGTTTTATGAT+TGG + chr5_1:7175721-7175740 Msa0714520:intron 20.0%
!! TATAATCATAGCTATATTTC+TGG - chr5_1:7177352-7177371 None:intergenic 20.0%
!! CTAAGGTAAATTTCGATTTT+TGG + chr5_1:7175400-7175419 Msa0714520:intron 25.0%
!!! TCGTTACTCTAAATTTTTTG+CGG + chr5_1:7175628-7175647 Msa0714520:intron 25.0%
! TGGATGAAATCTTGAAAATT+AGG + chr5_1:7175831-7175850 Msa0714520:intron 25.0%
! GGATGAAATCTTGAAAATTA+GGG + chr5_1:7175832-7175851 Msa0714520:intron 25.0%
!!! TCATGATTAGTTTAAAACTG+AGG + chr5_1:7175926-7175945 Msa0714520:intron 25.0%
!!! TGAACAAGGTTTTGATAATA+AGG + chr5_1:7175960-7175979 Msa0714520:intron 25.0%
!!! TGTATTGGTAATGATCATAT+TGG + chr5_1:7176074-7176093 Msa0714520:intron 25.0%
! TAATGATCATATTGGATTTG+AGG + chr5_1:7176082-7176101 Msa0714520:intron 25.0%
!!! TCAAAGTCTTGTTTTGATAT+TGG + chr5_1:7176158-7176177 Msa0714520:intron 25.0%
! TGATAATTATGTTGGATTTG+AGG + chr5_1:7176270-7176289 Msa0714520:intron 25.0%
!! TGCATATTTTGTAATTGACT+TGG + chr5_1:7176326-7176345 Msa0714520:intron 25.0%
! TTGTTTCAGTTATAATCCTT+TGG + chr5_1:7176365-7176384 Msa0714520:intron 25.0%
!! ATTTTTACTTTGCAAAACTG+AGG + chr5_1:7176751-7176770 Msa0714520:CDS 25.0%
!! TTTTTACTTTGCAAAACTGA+GGG + chr5_1:7176752-7176771 Msa0714520:CDS 25.0%
!!! TCACTTTTGAGTATTGAAAT+TGG + chr5_1:7176839-7176858 Msa0714520:intron 25.0%
!! TTGAAATTGGTAATTGTTGA+TGG + chr5_1:7176852-7176871 Msa0714520:intron 25.0%
!! TGAAATTGGTAATTGTTGAT+GGG + chr5_1:7176853-7176872 Msa0714520:intron 25.0%
!!! GTGAATTTTGTTTATGATTC+AGG + chr5_1:7176889-7176908 Msa0714520:intron 25.0%
!! TTAGAGGAAGAAAACTATTT+TGG + chr5_1:7177195-7177214 Msa0714520:three_prime_UTR 25.0%
!!! TATAATCCAGTGTTATTTCT+TGG + chr5_1:7177384-7177403 Msa0714520:three_prime_UTR 25.0%
! TTTTCGTCTTTCTTCTCTAA+CGG - chr5_1:7174955-7174974 None:intergenic 30.0%
AAAAAGCAAGCAGAGAAAAA+TGG + chr5_1:7174996-7175015 Msa0714520:exon 30.0%
GAAAATTGAATCGGAGAAAT+TGG - chr5_1:7175129-7175148 None:intergenic 30.0%
!! AATTTTGTTTAGGCTTGTTC+TGG + chr5_1:7175237-7175256 Msa0714520:intron 30.0%
TGAGATGATTCAGAATTACA+AGG + chr5_1:7175344-7175363 Msa0714520:CDS 30.0%
CAACAAACTCAAAATCACTA+AGG + chr5_1:7175383-7175402 Msa0714520:CDS 30.0%
TACTGTGATTCTGTTAATTC+TGG + chr5_1:7175587-7175606 Msa0714520:CDS 30.0%
!!! TTACTCTAAATTTTTTGCGG+AGG + chr5_1:7175631-7175650 Msa0714520:intron 30.0%
TGAAAATTAGGGTTTACGAT+TGG + chr5_1:7175843-7175862 Msa0714520:intron 30.0%
GAATTCATTCAAATGCTTTG+AGG + chr5_1:7175897-7175916 Msa0714520:intron 30.0%
AATAAAACATTCAGCAACCT+CGG - chr5_1:7176131-7176150 None:intergenic 30.0%
! GTTTGATTAGTTCAAAACTG+AGG + chr5_1:7176210-7176229 Msa0714520:intron 30.0%
!!! TTGAAGTCTTGTTTTGATAC+TGG + chr5_1:7176247-7176266 Msa0714520:intron 30.0%
GATACTGGTGATAATTATGT+TGG + chr5_1:7176262-7176281 Msa0714520:intron 30.0%
! TGGATTTGAGGATTTAAGTT+TGG + chr5_1:7176193-7176212 Msa0714520:intron 30.0%
! GTTTGGTTAGTTCAAAAGTA+AGG + chr5_1:7176299-7176318 Msa0714520:intron 30.0%
!!! TATTTTGTAATTGACTTGGC+TGG + chr5_1:7176330-7176349 Msa0714520:intron 30.0%
AGAGTTTACAAGCAAAATAC+CGG - chr5_1:7176819-7176838 None:intergenic 30.0%
TGATCTGAAGGAAAAATTAG+AGG + chr5_1:7177179-7177198 Msa0714520:exon 30.0%
!! ATCATAGCTATATTTCTGGA+TGG - chr5_1:7177348-7177367 None:intergenic 30.0%
ATCAAGAAGCTGACAATGAA+CGG - chr5_1:7175265-7175284 None:intergenic 35.0%
TCGAAATTCACCTTATGCAT+CGG - chr5_1:7175309-7175328 None:intergenic 35.0%
! TTGATTTTCGCAGCATATTG+AGG + chr5_1:7175502-7175521 Msa0714520:intron 35.0%
ATGAACTCCAGATTATCCAA+CGG - chr5_1:7175551-7175570 None:intergenic 35.0%
! ATAATCTGGAGTTCATGCAA+TGG + chr5_1:7175555-7175574 Msa0714520:CDS 35.0%
TGATGCTAATCTTAATTGCG+TGG + chr5_1:7175680-7175699 Msa0714520:intron 35.0%
AGGTTACTGAATGTTGAACA+AGG + chr5_1:7175946-7175965 Msa0714520:intron 35.0%
!! GAAGTGTCTTGTTGTTGTAT+TGG + chr5_1:7176059-7176078 Msa0714520:intron 35.0%
GCTTGATAAATTCTAAACCG+AGG + chr5_1:7176111-7176130 Msa0714520:intron 35.0%
! TCAGTTATAATCCTTTGGAG+AGG + chr5_1:7176370-7176389 Msa0714520:intron 35.0%
GTGCATAGATCTAACACTTA+AGG + chr5_1:7176674-7176693 Msa0714520:intron 35.0%
! ATCCATTGATAGTCTTGAGA+AGG + chr5_1:7176722-7176741 Msa0714520:CDS 35.0%
TTCCTTCTCAAGACTATCAA+TGG - chr5_1:7176727-7176746 None:intergenic 35.0%
TTGTATGCTACTGATGACAA+TGG + chr5_1:7176935-7176954 Msa0714520:CDS 35.0%
TCGTCTAGGAGACAAATTAT+TGG - chr5_1:7177113-7177132 None:intergenic 35.0%
! ATAATTTGTCTCCTAGACGA+AGG + chr5_1:7177113-7177132 Msa0714520:CDS 35.0%
GTTTCGAATGTTCACCATAA+CGG + chr5_1:7177145-7177164 Msa0714520:CDS 35.0%
TTTCGAATGTTCACCATAAC+GGG + chr5_1:7177146-7177165 Msa0714520:CDS 35.0%
! TTTTTCCTTCAGATCATGAG+AGG - chr5_1:7177175-7177194 None:intergenic 35.0%
! TAATCCAGAAGTATAGCTGT+TGG + chr5_1:7177316-7177335 Msa0714520:three_prime_UTR 35.0%
ATTACCAACAGCTATACTTC+TGG - chr5_1:7177323-7177342 None:intergenic 35.0%
AGAAAAATGGCGACGAACAT+TGG + chr5_1:7175009-7175028 Msa0714520:exon 40.0%
GAGTTGAATTGATCCAAGAG+AGG - chr5_1:7175074-7175093 None:intergenic 40.0%
AATTGGAACCTCTTCGACTT+TGG - chr5_1:7175112-7175131 None:intergenic 40.0%
TTATGCATCGGAACAATTCC+AGG - chr5_1:7175297-7175316 None:intergenic 40.0%
TGGAATTGTTCCGATGCATA+AGG + chr5_1:7175296-7175315 Msa0714520:CDS 40.0%
TACTGCAAACCATGCAAATC+CGG + chr5_1:7176527-7176546 Msa0714520:CDS 40.0%
AGTACCTGTTGATCATATGC+AGG - chr5_1:7176603-7176622 None:intergenic 40.0%
TCCTGAAGTAGAACATTCAC+CGG + chr5_1:7176797-7176816 Msa0714520:CDS 40.0%
TGATGACAATGGATCTGAGT+TGG + chr5_1:7176946-7176965 Msa0714520:CDS 40.0%
CACAAGCCAAGAAATAACAC+TGG - chr5_1:7177393-7177412 None:intergenic 40.0%
GGCGACGAACATTGGAATAA+TGG + chr5_1:7175017-7175036 Msa0714520:CDS 45.0%
ATGGATGCTGCATACTTCGT+CGG + chr5_1:7175036-7175055 Msa0714520:CDS 45.0%
! GCAGATCTGAAATCCTCTCT+TGG + chr5_1:7175058-7175077 Msa0714520:CDS 45.0%
CAATCTCTCCAAAGTCGAAG+AGG + chr5_1:7175101-7175120 Msa0714520:CDS 45.0%
GCATATTGAGGTTAGCAAGC+TGG + chr5_1:7175514-7175533 Msa0714520:intron 45.0%
AGGAAGACCGTTGGATAATC+TGG + chr5_1:7175541-7175560 Msa0714520:CDS 45.0%
CTGTTAATTCTGGACAGCAC+AGG + chr5_1:7175597-7175616 Msa0714520:CDS 45.0%
ACACTCTCAACCCTCAAACA+AGG + chr5_1:7176443-7176462 Msa0714520:CDS 45.0%
CACTCTCAACCCTCAAACAA+GGG + chr5_1:7176444-7176463 Msa0714520:CDS 45.0%
! GTAGAACCACCCTTGTTTGA+GGG - chr5_1:7176456-7176475 None:intergenic 45.0%
! AGTAGAACCACCCTTGTTTG+AGG - chr5_1:7176457-7176476 None:intergenic 45.0%
ATCATTCCTTCGAGCAGTGT+GGG - chr5_1:7176502-7176521 None:intergenic 45.0%
AGCTCCTGCATATGATCAAC+AGG + chr5_1:7176596-7176615 Msa0714520:CDS 45.0%
ACCGGTGAATGTTCTACTTC+AGG - chr5_1:7176801-7176820 None:intergenic 45.0%
! TATGCTTACTGCTGGTCTAC+AGG + chr5_1:7176982-7177001 Msa0714520:CDS 45.0%
TCCTCAGAAACCTCAGCAAT+GGG - chr5_1:7177025-7177044 None:intergenic 45.0%
AAAGAACTTTGCCAACCCTG+AGG + chr5_1:7177072-7177091 Msa0714520:CDS 45.0%
ACATCAGAAAGCCTTCGTCT+AGG - chr5_1:7177127-7177146 None:intergenic 45.0%
CGGAACAATTCCAGGATGAG+CGG - chr5_1:7175289-7175308 None:intergenic 50.0%
GAGGTTAGCAAGCTGGTGAA+AGG + chr5_1:7175521-7175540 Msa0714520:CDS 50.0%
CACATCTCTCTCCTCTCCAA+AGG - chr5_1:7176384-7176403 None:intergenic 50.0%
TCTCAACCCTCAAACAAGGG+TGG + chr5_1:7176447-7176466 Msa0714520:CDS 50.0%
! AGGGTGGTTCTACTTCACAC+AGG + chr5_1:7176463-7176482 Msa0714520:CDS 50.0%
AATCTTCCCACACTGCTCGA+AGG + chr5_1:7176493-7176512 Msa0714520:CDS 50.0%
CATCATTCCTTCGAGCAGTG+TGG - chr5_1:7176503-7176522 None:intergenic 50.0%
TGCAAACCATGCAAATCCGG+TGG + chr5_1:7176530-7176549 Msa0714520:CDS 50.0%
TTGCAACCACCGGATTTGCA+TGG - chr5_1:7176539-7176558 None:intergenic 50.0%
! CTAGCAGCTTTTGCAACCAC+CGG - chr5_1:7176549-7176568 None:intergenic 50.0%
GCTCAAGCTATGCTTACTGC+TGG + chr5_1:7176974-7176993 Msa0714520:CDS 50.0%
CCTCAGAAACCTCAGCAATG+GGG - chr5_1:7177024-7177043 None:intergenic 50.0%
CTCCTCAGAAACCTCAGCAA+TGG - chr5_1:7177026-7177045 None:intergenic 50.0%
TCATGAGAGGTGACCCGTTA+TGG - chr5_1:7177162-7177181 None:intergenic 50.0%
GGTCACCTCTCATGATCTGA+AGG + chr5_1:7177167-7177186 Msa0714520:CDS 50.0%
CTTCTTGATGCCGCTCATCC+TGG + chr5_1:7175276-7175295 Msa0714520:CDS 55.0%
GCTGGTGAAAGGAAGACCGT+TGG + chr5_1:7175532-7175551 Msa0714520:CDS 55.0%
TGGAGAGGAGAGAGATGTGC+AGG + chr5_1:7176385-7176404 Msa0714520:CDS 55.0%
GGAGAGGAGAGAGATGTGCA+GGG + chr5_1:7176386-7176405 Msa0714520:CDS 55.0%
GAGAGGAGAGAGATGTGCAG+GGG + chr5_1:7176387-7176406 Msa0714520:CDS 55.0%
GCAGTGTGGGAAGATTGAGG+AGG - chr5_1:7176489-7176508 None:intergenic 55.0%
CGAGCAGTGTGGGAAGATTG+AGG - chr5_1:7176492-7176511 None:intergenic 55.0%
CGGTGGTTGCAAAAGCTGCT+AGG + chr5_1:7176547-7176566 Msa0714520:CDS 55.0%
ACCTCAGCAATGGGGCTCAA+TGG - chr5_1:7177016-7177035 None:intergenic 55.0%
CCCCATTGCTGAGGTTTCTG+AGG + chr5_1:7177021-7177040 Msa0714520:CDS 55.0%
AGCAGCATCAACCTCAGGGT+TGG - chr5_1:7177086-7177105 None:intergenic 55.0%
!! AACCCTGAGGTTGATGCTGC+TGG + chr5_1:7177085-7177104 Msa0714520:CDS 55.0%
TGCCAGCAGCATCAACCTCA+GGG - chr5_1:7177090-7177109 None:intergenic 55.0%
AGGAGAGAGATGTGCAGGGG+AGG + chr5_1:7176390-7176409 Msa0714520:CDS 60.0%
AGAGAGATGTGCAGGGGAGG+AGG + chr5_1:7176393-7176412 Msa0714520:CDS 60.0%
TGCAGGAGCTGCAGCAACAG+CGG - chr5_1:7176586-7176605 None:intergenic 60.0%
GCCATTGAGCCCCATTGCTG+AGG + chr5_1:7177012-7177031 Msa0714520:CDS 60.0%
GTGCCAGCAGCATCAACCTC+AGG - chr5_1:7177091-7177110 None:intergenic 60.0%
GAGATGTGCAGGGGAGGAGG+AGG + chr5_1:7176396-7176415 Msa0714520:CDS 65.0%
AGCTGCAGCAACAGCGGCGA+CGG - chr5_1:7176580-7176599 None:intergenic 65.0%
GCAACAGCGGCGACGGCAGC+AGG - chr5_1:7176573-7176592 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 7174944 7177464 7174944 ID=Msa0714520;Name=Msa0714520
chr5_1 mRNA 7174944 7177464 7174944 ID=Msa0714520-mRNA-1;Parent=Msa0714520;Name=Msa0714520-mRNA-1;_AED=0.10;_eAED=0.10;_QI=71|1|1|1|1|1|6|278|333
chr5_1 exon 7174944 7175122 7174944 ID=Msa0714520-mRNA-1:exon:2980;Parent=Msa0714520-mRNA-1
chr5_1 exon 7175249 7175404 7175249 ID=Msa0714520-mRNA-1:exon:2981;Parent=Msa0714520-mRNA-1
chr5_1 exon 7175515 7175618 7175515 ID=Msa0714520-mRNA-1:exon:2982;Parent=Msa0714520-mRNA-1
chr5_1 exon 7176374 7176617 7176374 ID=Msa0714520-mRNA-1:exon:2983;Parent=Msa0714520-mRNA-1
chr5_1 exon 7176705 7176818 7176705 ID=Msa0714520-mRNA-1:exon:2984;Parent=Msa0714520-mRNA-1
chr5_1 exon 7176911 7177464 7176911 ID=Msa0714520-mRNA-1:exon:2985;Parent=Msa0714520-mRNA-1
chr5_1 five_prime_UTR 7174944 7175014 7174944 ID=Msa0714520-mRNA-1:five_prime_utr;Parent=Msa0714520-mRNA-1
chr5_1 CDS 7175015 7175122 7175015 ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1 CDS 7175249 7175404 7175249 ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1 CDS 7175515 7175618 7175515 ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1 CDS 7176374 7176617 7176374 ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1 CDS 7176705 7176818 7176705 ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1 CDS 7176911 7177186 7176911 ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1 three_prime_UTR 7177187 7177464 7177187 ID=Msa0714520-mRNA-1:three_prime_utr;Parent=Msa0714520-mRNA-1
Gene Sequence

>Msa0714520

ATGGCGACGAACATTGGAATAATGGATGCTGCATACTTCGTCGGCAGATCTGAAATCCTCTCTTGGATCAATTCAACTCTTCAACTCAATCTCTCCAAAGTCGAAGAGGCTTGTTCTGGTGCCGTTCATTGTCAGCTTCTTGATGCCGCTCATCCTGGAATTGTTCCGATGCATAAGGTGAATTTCGATGCGAAGAATGAGTATGAGATGATTCAGAATTACAAGGTTCTTCAAGATGTTTTCAACAAACTCAAAATCACTAAGCATATTGAGGTTAGCAAGCTGGTGAAAGGAAGACCGTTGGATAATCTGGAGTTCATGCAATGGATGAAACGATACTGTGATTCTGTTAATTCTGGACAGCACAGTTATAATCCTTTGGAGAGGAGAGAGATGTGCAGGGGAGGAGGAGGAAGAGAAGTGAGTAAAAAATCTGCACACTCTCAACCCTCAAACAAGGGTGGTTCTACTTCACACAGGCCTCCTCAATCTTCCCACACTGCTCGAAGGAATGATGTGTCTACTGCAAACCATGCAAATCCGGTGGTTGCAAAAGCTGCTAGGCCTGCTGCCGTCGCCGCTGTTGCTGCAGCTCCTGCATATGATCAACAGATAACAGAATTGAAGTTATCCATTGATAGTCTTGAGAAGGAACGAGATTTTTACTTTGCAAAACTGAGGGATATTGAGATACTTTGTCAGACTCCTGAAGTAGAACATTCACCGGTTTTTGCAGCAATACAGAAGATATTGTATGCTACTGATGACAATGGATCTGAGTTGGAAGAAGCTCAAGCTATGCTTACTGCTGGTCTACAGGAAGCAGAGCCATTGAGCCCCATTGCTGAGGTTTCTGAGGAGAAGAGCAGTTCTGAAAATCTCAAGAGAAAGAACTTTGCCAACCCTGAGGTTGATGCTGCTGGCACCAATAATTTGTCTCCTAGACGAAGGCTTTCTGATGTTTCGAATGTTCACCATAACGGGTCACCTCTCATGATCTGA

Protein sequence

>Msa0714520

MATNIGIMDAAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLLDAAHPGIVPMHKVNFDAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGQHSYNPLERREMCRGGGGREVSKKSAHSQPSNKGGSTSHRPPQSSHTARRNDVSTANHANPVVAKAARPAAVAAVAAAPAYDQQITELKLSIDSLEKERDFYFAKLRDIEILCQTPEVEHSPVFAAIQKILYATDDNGSELEEAQAMLTAGLQEAEPLSPIAEVSEEKSSSENLKRKNFANPEVDAAGTNNLSPRRRLSDVSNVHHNGSPLMI*