AlfalfaGEDB | Msa0714520

M. sativa cultivar zhongmu-4 / Msa0714520

KEGG: K10436
GO: GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
PFAM: PF00307.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714520	XP_003611667.2	96.707	334	9	2	1	333	1	333	0.0	668

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714520	sp\|Q9FGQ6\|EB1C_ARATH	61.494	348	97	10	1	332	1	327	6.19e-141	404

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714520	G7K588	96.707	334	9	2	1	333	1	333	0.0	668

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa0714520	0.816000	6.926886e-52	-8.615850e-47
Msa0005020	Msa0714520	0.855739	5.153712e-62	-8.615850e-47
Msa0014770	Msa0714520	0.809283	2.042389e-50	-8.615850e-47
Msa0015570	Msa0714520	0.836803	7.552439e-57	-8.615850e-47
Msa0016040	Msa0714520	0.859274	4.630983e-63	-8.615850e-47
Msa0016530	Msa0714520	0.886076	4.682258e-72	-8.615850e-47
Msa0018920	Msa0714520	0.846069	2.737211e-59	-8.615850e-47
Msa0019930	Msa0714520	0.879221	1.487254e-69	-8.615850e-47
Msa0020540	Msa0714520	0.877788	4.744966e-69	-8.615850e-47
Msa0025160	Msa0714520	0.853041	3.106036e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714520	MtrunA17_Chr5g0401741	96.707	334	9	2	1	333	1	333	0.0	668
Msa0714520	MtrunA17_Chr3g0092651	58.657	283	94	5	1	276	1	267	1.54e-114	333
Msa0714520	MtrunA17_Chr4g0060561	57.193	285	94	5	1	276	1	266	2.45e-109	320

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0714520	AT5G67270.1	61.494	348	97	10	1	332	1	327	6.30e-142	404
Msa0714520	AT3G47690.1	54.915	295	110	5	1	291	1	276	8.15e-112	326
Msa0714520	AT5G62500.1	57.194	278	97	5	1	272	1	262	4.81e-108	317

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Find 84 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTTTGCCAACCCTG+AGG	0.702193	5_1:+7177072	Msa0714520:CDS
AACCCTGAGGTTGATGCTGC+TGG	0.418093	5_1:+7177085	Msa0714520:CDS
AATCTTCCCACACTGCTCGA+AGG	0.610802	5_1:+7176493	Msa0714520:CDS
AATTGGAACCTCTTCGACTT+TGG	0.334561	5_1:-7175109	None:intergenic
ACACTCTCAACCCTCAAACA+AGG	0.557498	5_1:+7176443	Msa0714520:CDS
ACATCAGAAAGCCTTCGTCT+AGG	0.591311	5_1:-7177124	None:intergenic
ACCGGTGAATGTTCTACTTC+AGG	0.375265	5_1:-7176798	None:intergenic
ACCTCAGCAATGGGGCTCAA+TGG	0.463460	5_1:-7177013	None:intergenic
AGAGAGATGTGCAGGGGAGG+AGG	0.344828	5_1:+7176393	Msa0714520:CDS
AGCAGCATCAACCTCAGGGT+TGG	0.539714	5_1:-7177083	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGCAAGCAGAGAAAAA+TGG	+	chr5_1:7174996-7175015	Msa0714520:exon	30.0%
GAAAATTGAATCGGAGAAAT+TGG	-	chr5_1:7175129-7175148	None:intergenic	30.0%
TGAGATGATTCAGAATTACA+AGG	+	chr5_1:7175344-7175363	Msa0714520:CDS	30.0%
CAACAAACTCAAAATCACTA+AGG	+	chr5_1:7175383-7175402	Msa0714520:CDS	30.0%
TACTGTGATTCTGTTAATTC+TGG	+	chr5_1:7175587-7175606	Msa0714520:CDS	30.0%
TGAAAATTAGGGTTTACGAT+TGG	+	chr5_1:7175843-7175862	Msa0714520:intron	30.0%
GAATTCATTCAAATGCTTTG+AGG	+	chr5_1:7175897-7175916	Msa0714520:intron	30.0%
AATAAAACATTCAGCAACCT+CGG	-	chr5_1:7176131-7176150	None:intergenic	30.0%
GATACTGGTGATAATTATGT+TGG	+	chr5_1:7176262-7176281	Msa0714520:intron	30.0%
AGAGTTTACAAGCAAAATAC+CGG	-	chr5_1:7176819-7176838	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	7174944	7177464	7174944	ID=Msa0714520;Name=Msa0714520
chr5_1	mRNA	7174944	7177464	7174944	ID=Msa0714520-mRNA-1;Parent=Msa0714520;Name=Msa0714520-mRNA-1;_AED=0.10;_eAED=0.10;_QI=71\|1\|1\|1\|1\|1\|6\|278\|333
chr5_1	exon	7174944	7175122	7174944	ID=Msa0714520-mRNA-1:exon:2980;Parent=Msa0714520-mRNA-1
chr5_1	exon	7175249	7175404	7175249	ID=Msa0714520-mRNA-1:exon:2981;Parent=Msa0714520-mRNA-1
chr5_1	exon	7175515	7175618	7175515	ID=Msa0714520-mRNA-1:exon:2982;Parent=Msa0714520-mRNA-1
chr5_1	exon	7176374	7176617	7176374	ID=Msa0714520-mRNA-1:exon:2983;Parent=Msa0714520-mRNA-1
chr5_1	exon	7176705	7176818	7176705	ID=Msa0714520-mRNA-1:exon:2984;Parent=Msa0714520-mRNA-1
chr5_1	exon	7176911	7177464	7176911	ID=Msa0714520-mRNA-1:exon:2985;Parent=Msa0714520-mRNA-1
chr5_1	five_prime_UTR	7174944	7175014	7174944	ID=Msa0714520-mRNA-1:five_prime_utr;Parent=Msa0714520-mRNA-1
chr5_1	CDS	7175015	7175122	7175015	ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1	CDS	7175249	7175404	7175249	ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1	CDS	7175515	7175618	7175515	ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1	CDS	7176374	7176617	7176374	ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1	CDS	7176705	7176818	7176705	ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1	CDS	7176911	7177186	7176911	ID=Msa0714520-mRNA-1:cds;Parent=Msa0714520-mRNA-1
chr5_1	three_prime_UTR	7177187	7177464	7177187	ID=Msa0714520-mRNA-1:three_prime_utr;Parent=Msa0714520-mRNA-1

Gene Sequence

>Msa0714520

ATGGCGACGAACATTGGAATAATGGATGCTGCATACTTCGTCGGCAGATCTGAAATCCTCTCTTGGATCAATTCAACTCTTCAACTCAATCTCTCCAAAGTCGAAGAGGCTTGTTCTGGTGCCGTTCATTGTCAGCTTCTTGATGCCGCTCATCCTGGAATTGTTCCGATGCATAAGGTGAATTTCGATGCGAAGAATGAGTATGAGATGATTCAGAATTACAAGGTTCTTCAAGATGTTTTCAACAAACTCAAAATCACTAAGCATATTGAGGTTAGCAAGCTGGTGAAAGGAAGACCGTTGGATAATCTGGAGTTCATGCAATGGATGAAACGATACTGTGATTCTGTTAATTCTGGACAGCACAGTTATAATCCTTTGGAGAGGAGAGAGATGTGCAGGGGAGGAGGAGGAAGAGAAGTGAGTAAAAAATCTGCACACTCTCAACCCTCAAACAAGGGTGGTTCTACTTCACACAGGCCTCCTCAATCTTCCCACACTGCTCGAAGGAATGATGTGTCTACTGCAAACCATGCAAATCCGGTGGTTGCAAAAGCTGCTAGGCCTGCTGCCGTCGCCGCTGTTGCTGCAGCTCCTGCATATGATCAACAGATAACAGAATTGAAGTTATCCATTGATAGTCTTGAGAAGGAACGAGATTTTTACTTTGCAAAACTGAGGGATATTGAGATACTTTGTCAGACTCCTGAAGTAGAACATTCACCGGTTTTTGCAGCAATACAGAAGATATTGTATGCTACTGATGACAATGGATCTGAGTTGGAAGAAGCTCAAGCTATGCTTACTGCTGGTCTACAGGAAGCAGAGCCATTGAGCCCCATTGCTGAGGTTTCTGAGGAGAAGAGCAGTTCTGAAAATCTCAAGAGAAAGAACTTTGCCAACCCTGAGGTTGATGCTGCTGGCACCAATAATTTGTCTCCTAGACGAAGGCTTTCTGATGTTTCGAATGTTCACCATAACGGGTCACCTCTCATGATCTGA

Protein sequence

>Msa0714520

MATNIGIMDAAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLLDAAHPGIVPMHKVNFDAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGQHSYNPLERREMCRGGGGREVSKKSAHSQPSNKGGSTSHRPPQSSHTARRNDVSTANHANPVVAKAARPAAVAAVAAAPAYDQQITELKLSIDSLEKERDFYFAKLRDIEILCQTPEVEHSPVFAAIQKILYATDDNGSELEEAQAMLTAGLQEAEPLSPIAEVSEEKSSSENLKRKNFANPEVDAAGTNNLSPRRRLSDVSNVHHNGSPLMI*