Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413010 | XP_013460265.1 | 93.154 | 409 | 28 | 0 | 1 | 409 | 1 | 409 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413010 | A0A072UXY4 | 93.154 | 409 | 28 | 0 | 1 | 409 | 1 | 409 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0413010 | Msa0504610 | 0.814853 | 1.246823e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413010 | MtrunA17_Chr3g0105161 | 93.154 | 409 | 28 | 0 | 1 | 409 | 1 | 409 | 0.0 | 723 |
| Msa0413010 | MtrunA17_Chr5g0430231 | 35.025 | 394 | 162 | 14 | 27 | 408 | 28 | 339 | 1.35e-37 | 139 |
| Msa0413010 | MtrunA17_Chr4g0006251 | 25.061 | 407 | 242 | 14 | 34 | 408 | 10 | 385 | 1.69e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413010 | AT5G58630.1 | 27.228 | 404 | 216 | 18 | 28 | 407 | 17 | 366 | 7.54e-19 | 87.8 |
Find 68 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAACTCTTTGGACTATT+TGG | 0.114522 | 3_2:-57135610 | Msa0413010:CDS |
| CAACACTTCGCATCGGTTTA+AGG | 0.153116 | 3_2:-57135316 | Msa0413010:CDS |
| ATGAATGAACAAAGTGATTT+AGG | 0.228881 | 3_2:-57134371 | Msa0413010:CDS |
| GTTTGATTCGACGAATCTTT+TGG | 0.308174 | 3_2:+57135798 | None:intergenic |
| ATGAACTCTTTGGACTATTT+GGG | 0.321962 | 3_2:-57135609 | Msa0413010:CDS |
| TCCTATAGTGGCAAGGTTGA+TGG | 0.329973 | 3_2:-57135697 | Msa0413010:CDS |
| ACATCCTGTAGTGGTGGTTT+TGG | 0.332210 | 3_2:+57135863 | None:intergenic |
| CAGACTAGTTGAAGATGAAT+TGG | 0.352096 | 3_2:-57134423 | Msa0413010:CDS |
| CTTATACCACTTTATTCATA+AGG | 0.363564 | 3_2:+57134229 | None:intergenic |
| TCGCATACGAATGTGCTTGC+CGG | 0.369602 | 3_2:+57134571 | None:intergenic |
| TAGCAAGTCAATGAACTCTT+TGG | 0.393058 | 3_2:-57135619 | Msa0413010:CDS |
| ACTATTTGGGAGAAAGTAAT+GGG | 0.400265 | 3_2:-57135596 | Msa0413010:CDS |
| AATGAGTTGTTCAGAATTGA+AGG | 0.402160 | 3_2:-57135415 | Msa0413010:CDS |
| TGCTTGCCGGTTTCTAGCTC+CGG | 0.403108 | 3_2:+57134584 | None:intergenic |
| ATGATGAGAAAATGAGCAAA+AGG | 0.406081 | 3_2:-57135365 | Msa0413010:CDS |
| GTTGATGGGTTTAGAATCAA+TGG | 0.406142 | 3_2:-57135682 | Msa0413010:CDS |
| TGAATAAAGTGGTATAAGAT+TGG | 0.418295 | 3_2:-57134224 | Msa0413010:three_prime_UTR |
| GAGCGCAGGTCTTGTGTAGC+AGG | 0.425211 | 3_2:-57135096 | Msa0413010:intron |
| TCAAATTCAAGAACAGAAAC+AGG | 0.433530 | 3_2:+57135117 | None:intergenic |
| CCCATCAACCTTGCCACTAT+AGG | 0.448438 | 3_2:+57135696 | None:intergenic |
| AGCTCCAAAACCACCACTAC+AGG | 0.452085 | 3_2:-57135867 | Msa0413010:CDS |
| GACTATTTGGGAGAAAGTAA+TGG | 0.465825 | 3_2:-57135597 | Msa0413010:CDS |
| CCTATAGTGGCAAGGTTGAT+GGG | 0.467036 | 3_2:-57135696 | Msa0413010:CDS |
| CTTGATGATTGATGAGAAGA+AGG | 0.472348 | 3_2:-57134537 | Msa0413010:CDS |
| TTGACACCGGAGCTAGAAAC+CGG | 0.487928 | 3_2:-57134590 | Msa0413010:CDS |
| TACTCCTCCTCCTCCTATAG+TGG | 0.488986 | 3_2:-57135709 | Msa0413010:CDS |
| GGGATAGATTCTGTAGCAGT+TGG | 0.489760 | 3_2:-57134632 | Msa0413010:CDS |
| AATTGCAAGGAAGTTGTAGT+TGG | 0.497467 | 3_2:-57135234 | Msa0413010:CDS |
| AATGAAGGTGAGAGTGGTAA+AGG | 0.501762 | 3_2:-57135465 | Msa0413010:CDS |
| ACATTTGAACAAGATGAAGT+TGG | 0.503916 | 3_2:+57135909 | None:intergenic |
| GATTGATGAGAAGAAGGATA+AGG | 0.510068 | 3_2:-57134531 | Msa0413010:CDS |
| GTGCTTAGCTTTGGAAATGA+AGG | 0.510538 | 3_2:-57135480 | Msa0413010:CDS |
| TGATCAATTGTTGAATGAAG+TGG | 0.514867 | 3_2:-57134315 | Msa0413010:CDS |
| TATAAACCTTATGAATAAAG+TGG | 0.515785 | 3_2:-57134235 | Msa0413010:three_prime_UTR |
| ATGCGCAAGATTCTTTGCTC+CGG | 0.516482 | 3_2:-57135828 | Msa0413010:CDS |
| TTGCTACGCGAAAGTGAACC+TGG | 0.516866 | 3_2:+57135636 | None:intergenic |
| AGTTTGCATCATAAGAGAGT+TGG | 0.518728 | 3_2:-57135564 | Msa0413010:CDS |
| CTGTTCTTGAATTTGAGCGC+AGG | 0.521187 | 3_2:-57135110 | Msa0413010:CDS |
| TCACTCATTTGAAAAGTTGG+TGG | 0.522619 | 3_2:+57135519 | None:intergenic |
| GAAAGAGAAGTGCAGTTACA+AGG | 0.524839 | 3_2:-57134474 | Msa0413010:CDS |
| TTGGAGCTGCTACACATTGG+TGG | 0.527912 | 3_2:+57135882 | None:intergenic |
| ATTGAGAGCAACAAATATGA+AGG | 0.528001 | 3_2:-57134506 | Msa0413010:CDS |
| TGATGAGAAAATGAGCAAAA+GGG | 0.529730 | 3_2:-57135364 | Msa0413010:CDS |
| ATGAAGGTGAGAGTGGTAAA+GGG | 0.535390 | 3_2:-57135464 | Msa0413010:CDS |
| GAACCTGGTTTCGACGCAAA+AGG | 0.536176 | 3_2:+57135651 | None:intergenic |
| GCAAAGAATCTTGCGCATGA+TGG | 0.544886 | 3_2:+57135833 | None:intergenic |
| CTCCTCCTCCTATAGTGGCA+AGG | 0.548931 | 3_2:-57135704 | Msa0413010:CDS |
| TTGAGTAACTACTCACAAGT+TGG | 0.556609 | 3_2:-57134280 | Msa0413010:exon |
| GGTAAAGGGTTGAAATCCAA+TGG | 0.559750 | 3_2:-57135450 | Msa0413010:CDS |
| CAGTTGAATTGTTGAAAGCA+AGG | 0.561633 | 3_2:-57135257 | Msa0413010:CDS |
| ATCAACCTTGCCACTATAGG+AGG | 0.564039 | 3_2:+57135699 | None:intergenic |
| AACCTTGCCACTATAGGAGG+AGG | 0.571014 | 3_2:+57135702 | None:intergenic |
| CTTGCCACTATAGGAGGAGG+AGG | 0.572004 | 3_2:+57135705 | None:intergenic |
| TTTGGAAATGAAGGTGAGAG+TGG | 0.573933 | 3_2:-57135471 | Msa0413010:CDS |
| GTTGAAAGCAAGGAATTGCA+AGG | 0.577214 | 3_2:-57135247 | Msa0413010:CDS |
| CTTAAACCGATGCGAAGTGT+TGG | 0.594941 | 3_2:+57135317 | None:intergenic |
| AGACTAGTTGAAGATGAATT+GGG | 0.595377 | 3_2:-57134422 | Msa0413010:CDS |
| GTGAAAGGCTGAAGAAGAGA+AGG | 0.599596 | 3_2:-57135212 | Msa0413010:CDS |
| GTAAAGGGTTGAAATCCAAT+GGG | 0.601677 | 3_2:-57135449 | Msa0413010:CDS |
| ATTTGCTGAATCAAACTCTG+TGG | 0.621996 | 3_2:+57135776 | None:intergenic |
| AGTGTCAATGATCACAACTT+CGG | 0.622805 | 3_2:-57135744 | Msa0413010:CDS |
| GGCTGAAGAAGAGAAGGACG+AGG | 0.623454 | 3_2:-57135206 | Msa0413010:CDS |
| GGCTGTGAGACATCCTGTAG+TGG | 0.633723 | 3_2:+57135854 | None:intergenic |
| TGTGAGACATCCTGTAGTGG+TGG | 0.637000 | 3_2:+57135857 | None:intergenic |
| AAATCACCAACACTTCGCAT+CGG | 0.638609 | 3_2:-57135323 | Msa0413010:CDS |
| AGGAAGTTGTAGTTGGTGAA+AGG | 0.652737 | 3_2:-57135227 | Msa0413010:CDS |
| CTAGTTGAAGATGAATTGGG+TGG | 0.660326 | 3_2:-57134419 | Msa0413010:CDS |
| TTCTAGAAGAAAGTTGACAC+CGG | 0.670681 | 3_2:-57134603 | Msa0413010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATATTTTTTTTTTGC+AGG | - | chr3_2:57135504-57135523 | Msa0413010:CDS | 10.0% |
| !!! | ATATATATTTTTTTTTTGCA+GGG | - | chr3_2:57135505-57135524 | Msa0413010:CDS | 10.0% |
| !!! | TATATATATTTTTTTTTTGC+AGG | - | chr3_2:57135504-57135523 | Msa0413010:CDS | 10.0% |
| !!! | ATATATATTTTTTTTTTGCA+GGG | - | chr3_2:57135505-57135524 | Msa0413010:CDS | 10.0% |
| !! | AACATATTCTTTATCAAATG+AGG | - | chr3_2:57135303-57135322 | Msa0413010:CDS | 20.0% |
| !! | TATAAACCTTATGAATAAAG+TGG | - | chr3_2:57135922-57135941 | Msa0413010:CDS | 20.0% |
| !! | AACATATTCTTTATCAAATG+AGG | - | chr3_2:57135303-57135322 | Msa0413010:CDS | 20.0% |
| !! | TATAAACCTTATGAATAAAG+TGG | - | chr3_2:57135922-57135941 | Msa0413010:CDS | 20.0% |
| !! | TTTTCACTCATTTGAAAAGT+TGG | + | chr3_2:57134644-57134663 | None:intergenic | 25.0% |
| !!! | AATTTTTTTGTGCTTAGCTT+TGG | - | chr3_2:57134668-57134687 | Msa0413010:intron | 25.0% |
| ! | TATACAAAATCTTATTGTCG+TGG | - | chr3_2:57135367-57135386 | Msa0413010:CDS | 25.0% |
| ! | CAAAAAATCAAGTTCATGTT+TGG | - | chr3_2:57135763-57135782 | Msa0413010:CDS | 25.0% |
| ! | ATGAATGAACAAAGTGATTT+AGG | - | chr3_2:57135786-57135805 | Msa0413010:CDS | 25.0% |
| ! | CTTATACCACTTTATTCATA+AGG | + | chr3_2:57135931-57135950 | None:intergenic | 25.0% |
| ! | TGAATAAAGTGGTATAAGAT+TGG | - | chr3_2:57135933-57135952 | Msa0413010:CDS | 25.0% |
| !! | TTTTCACTCATTTGAAAAGT+TGG | + | chr3_2:57134644-57134663 | None:intergenic | 25.0% |
| !!! | AATTTTTTTGTGCTTAGCTT+TGG | - | chr3_2:57134668-57134687 | Msa0413010:intron | 25.0% |
| ! | TATACAAAATCTTATTGTCG+TGG | - | chr3_2:57135367-57135386 | Msa0413010:CDS | 25.0% |
| ! | CAAAAAATCAAGTTCATGTT+TGG | - | chr3_2:57135763-57135782 | Msa0413010:CDS | 25.0% |
| ! | ATGAATGAACAAAGTGATTT+AGG | - | chr3_2:57135786-57135805 | Msa0413010:CDS | 25.0% |
| ! | CTTATACCACTTTATTCATA+AGG | + | chr3_2:57135931-57135950 | None:intergenic | 25.0% |
| ! | TGAATAAAGTGGTATAAGAT+TGG | - | chr3_2:57135933-57135952 | Msa0413010:CDS | 25.0% |
| ACATTTGAACAAGATGAAGT+TGG | + | chr3_2:57134251-57134270 | None:intergenic | 30.0% | |
| AATGAACTCTTTGGACTATT+TGG | - | chr3_2:57134547-57134566 | Msa0413010:CDS | 30.0% | |
| ATGAACTCTTTGGACTATTT+GGG | - | chr3_2:57134548-57134567 | Msa0413010:CDS | 30.0% | |
| ACTATTTGGGAGAAAGTAAT+GGG | - | chr3_2:57134561-57134580 | Msa0413010:CDS | 30.0% | |
| AATGAGTTGTTCAGAATTGA+AGG | - | chr3_2:57134742-57134761 | Msa0413010:intron | 30.0% | |
| ATGATGAGAAAATGAGCAAA+AGG | - | chr3_2:57134792-57134811 | Msa0413010:intron | 30.0% | |
| TGATGAGAAAATGAGCAAAA+GGG | - | chr3_2:57134793-57134812 | Msa0413010:intron | 30.0% | |
| TCAAATTCAAGAACAGAAAC+AGG | + | chr3_2:57135043-57135062 | None:intergenic | 30.0% | |
| AACGTATGATTAAAATCACG+TGG | + | chr3_2:57135217-57135236 | None:intergenic | 30.0% | |
| AATTTCAATCACATTGCGAT+CGG | - | chr3_2:57135339-57135358 | Msa0413010:CDS | 30.0% | |
| ACAACCAATGTTATACGATA+AGG | + | chr3_2:57135412-57135431 | None:intergenic | 30.0% | |
| ATTGAGAGCAACAAATATGA+AGG | - | chr3_2:57135651-57135670 | Msa0413010:CDS | 30.0% | |
| !! | ACAAGGAGTATGTAGATTTT+TGG | - | chr3_2:57135700-57135719 | Msa0413010:CDS | 30.0% |
| !! | CAAGGAGTATGTAGATTTTT+GGG | - | chr3_2:57135701-57135720 | Msa0413010:CDS | 30.0% |
| !! | AAGGAGTATGTAGATTTTTG+GGG | - | chr3_2:57135702-57135721 | Msa0413010:CDS | 30.0% |
| ! | AGACTAGTTGAAGATGAATT+GGG | - | chr3_2:57135735-57135754 | Msa0413010:CDS | 30.0% |
| TGATCAATTGTTGAATGAAG+TGG | - | chr3_2:57135842-57135861 | Msa0413010:CDS | 30.0% | |
| ACATTTGAACAAGATGAAGT+TGG | + | chr3_2:57134251-57134270 | None:intergenic | 30.0% | |
| AATGAACTCTTTGGACTATT+TGG | - | chr3_2:57134547-57134566 | Msa0413010:CDS | 30.0% | |
| ATGAACTCTTTGGACTATTT+GGG | - | chr3_2:57134548-57134567 | Msa0413010:CDS | 30.0% | |
| ACTATTTGGGAGAAAGTAAT+GGG | - | chr3_2:57134561-57134580 | Msa0413010:CDS | 30.0% | |
| AATGAGTTGTTCAGAATTGA+AGG | - | chr3_2:57134742-57134761 | Msa0413010:intron | 30.0% | |
| ATGATGAGAAAATGAGCAAA+AGG | - | chr3_2:57134792-57134811 | Msa0413010:intron | 30.0% | |
| TGATGAGAAAATGAGCAAAA+GGG | - | chr3_2:57134793-57134812 | Msa0413010:intron | 30.0% | |
| TCAAATTCAAGAACAGAAAC+AGG | + | chr3_2:57135043-57135062 | None:intergenic | 30.0% | |
| AACGTATGATTAAAATCACG+TGG | + | chr3_2:57135217-57135236 | None:intergenic | 30.0% | |
| AATTTCAATCACATTGCGAT+CGG | - | chr3_2:57135339-57135358 | Msa0413010:CDS | 30.0% | |
| ACAACCAATGTTATACGATA+AGG | + | chr3_2:57135412-57135431 | None:intergenic | 30.0% | |
| ATTGAGAGCAACAAATATGA+AGG | - | chr3_2:57135651-57135670 | Msa0413010:CDS | 30.0% | |
| !! | ACAAGGAGTATGTAGATTTT+TGG | - | chr3_2:57135700-57135719 | Msa0413010:CDS | 30.0% |
| !! | CAAGGAGTATGTAGATTTTT+GGG | - | chr3_2:57135701-57135720 | Msa0413010:CDS | 30.0% |
| !! | AAGGAGTATGTAGATTTTTG+GGG | - | chr3_2:57135702-57135721 | Msa0413010:CDS | 30.0% |
| ! | AGACTAGTTGAAGATGAATT+GGG | - | chr3_2:57135735-57135754 | Msa0413010:CDS | 30.0% |
| TGATCAATTGTTGAATGAAG+TGG | - | chr3_2:57135842-57135861 | Msa0413010:CDS | 30.0% | |
| !! | GTTTGATTCGACGAATCTTT+TGG | + | chr3_2:57134362-57134381 | None:intergenic | 35.0% |
| ! | ATTTGCTGAATCAAACTCTG+TGG | + | chr3_2:57134384-57134403 | None:intergenic | 35.0% |
| AGTGTCAATGATCACAACTT+CGG | - | chr3_2:57134413-57134432 | Msa0413010:CDS | 35.0% | |
| !! | GTTGATGGGTTTAGAATCAA+TGG | - | chr3_2:57134475-57134494 | Msa0413010:CDS | 35.0% |
| TAGCAAGTCAATGAACTCTT+TGG | - | chr3_2:57134538-57134557 | Msa0413010:CDS | 35.0% | |
| GACTATTTGGGAGAAAGTAA+TGG | - | chr3_2:57134560-57134579 | Msa0413010:CDS | 35.0% | |
| AGTTTGCATCATAAGAGAGT+TGG | - | chr3_2:57134593-57134612 | Msa0413010:CDS | 35.0% | |
| TCACTCATTTGAAAAGTTGG+TGG | + | chr3_2:57134641-57134660 | None:intergenic | 35.0% | |
| GTAAAGGGTTGAAATCCAAT+GGG | - | chr3_2:57134708-57134727 | Msa0413010:intron | 35.0% | |
| !!! | CATTTGCTTTTTTCTCCCAT+TGG | + | chr3_2:57134726-57134745 | None:intergenic | 35.0% |
| CAGTTGAATTGTTGAAAGCA+AGG | - | chr3_2:57134900-57134919 | Msa0413010:intron | 35.0% | |
| AATTGCAAGGAAGTTGTAGT+TGG | - | chr3_2:57134923-57134942 | Msa0413010:intron | 35.0% | |
| CGTTACACTGAGTAAAATCA+CGG | - | chr3_2:57135233-57135252 | Msa0413010:CDS | 35.0% | |
| TCGCAATGTGATTGAAATTG+AGG | + | chr3_2:57135338-57135357 | None:intergenic | 35.0% | |
| !! | TATTGTCGTGGACTAGATTA+CGG | - | chr3_2:57135379-57135398 | Msa0413010:CDS | 35.0% |
| CAGACCTTATCGTATAACAT+TGG | - | chr3_2:57135405-57135424 | Msa0413010:CDS | 35.0% | |
| ! | TTCTAGAAGAAAGTTGACAC+CGG | - | chr3_2:57135554-57135573 | Msa0413010:CDS | 35.0% |
| ! | CTTGATGATTGATGAGAAGA+AGG | - | chr3_2:57135620-57135639 | Msa0413010:CDS | 35.0% |
| GATTGATGAGAAGAAGGATA+AGG | - | chr3_2:57135626-57135645 | Msa0413010:CDS | 35.0% | |
| ! | CAGACTAGTTGAAGATGAAT+TGG | - | chr3_2:57135734-57135753 | Msa0413010:CDS | 35.0% |
| TTGAGTAACTACTCACAAGT+TGG | - | chr3_2:57135877-57135896 | Msa0413010:CDS | 35.0% | |
| !! | GTTTGATTCGACGAATCTTT+TGG | + | chr3_2:57134362-57134381 | None:intergenic | 35.0% |
| ! | ATTTGCTGAATCAAACTCTG+TGG | + | chr3_2:57134384-57134403 | None:intergenic | 35.0% |
| AGTGTCAATGATCACAACTT+CGG | - | chr3_2:57134413-57134432 | Msa0413010:CDS | 35.0% | |
| !! | GTTGATGGGTTTAGAATCAA+TGG | - | chr3_2:57134475-57134494 | Msa0413010:CDS | 35.0% |
| TAGCAAGTCAATGAACTCTT+TGG | - | chr3_2:57134538-57134557 | Msa0413010:CDS | 35.0% | |
| GACTATTTGGGAGAAAGTAA+TGG | - | chr3_2:57134560-57134579 | Msa0413010:CDS | 35.0% | |
| AGTTTGCATCATAAGAGAGT+TGG | - | chr3_2:57134593-57134612 | Msa0413010:CDS | 35.0% | |
| TCACTCATTTGAAAAGTTGG+TGG | + | chr3_2:57134641-57134660 | None:intergenic | 35.0% | |
| GTAAAGGGTTGAAATCCAAT+GGG | - | chr3_2:57134708-57134727 | Msa0413010:intron | 35.0% | |
| !!! | CATTTGCTTTTTTCTCCCAT+TGG | + | chr3_2:57134726-57134745 | None:intergenic | 35.0% |
| CAGTTGAATTGTTGAAAGCA+AGG | - | chr3_2:57134900-57134919 | Msa0413010:intron | 35.0% | |
| AATTGCAAGGAAGTTGTAGT+TGG | - | chr3_2:57134923-57134942 | Msa0413010:intron | 35.0% | |
| CGTTACACTGAGTAAAATCA+CGG | - | chr3_2:57135233-57135252 | Msa0413010:CDS | 35.0% | |
| TCGCAATGTGATTGAAATTG+AGG | + | chr3_2:57135338-57135357 | None:intergenic | 35.0% | |
| !! | TATTGTCGTGGACTAGATTA+CGG | - | chr3_2:57135379-57135398 | Msa0413010:CDS | 35.0% |
| CAGACCTTATCGTATAACAT+TGG | - | chr3_2:57135405-57135424 | Msa0413010:CDS | 35.0% | |
| ! | TTCTAGAAGAAAGTTGACAC+CGG | - | chr3_2:57135554-57135573 | Msa0413010:CDS | 35.0% |
| ! | CTTGATGATTGATGAGAAGA+AGG | - | chr3_2:57135620-57135639 | Msa0413010:CDS | 35.0% |
| GATTGATGAGAAGAAGGATA+AGG | - | chr3_2:57135626-57135645 | Msa0413010:CDS | 35.0% | |
| ! | CAGACTAGTTGAAGATGAAT+TGG | - | chr3_2:57135734-57135753 | Msa0413010:CDS | 35.0% |
| TTGAGTAACTACTCACAAGT+TGG | - | chr3_2:57135877-57135896 | Msa0413010:CDS | 35.0% | |
| !! | CGAATCTTTTGGAAGGTTTC+CGG | + | chr3_2:57134351-57134370 | None:intergenic | 40.0% |
| ! | GATTCGACGAATCTTTTGGA+AGG | + | chr3_2:57134358-57134377 | None:intergenic | 40.0% |
| !! | GTGCTTAGCTTTGGAAATGA+AGG | - | chr3_2:57134677-57134696 | Msa0413010:intron | 40.0% |
| TTTGGAAATGAAGGTGAGAG+TGG | - | chr3_2:57134686-57134705 | Msa0413010:intron | 40.0% | |
| AATGAAGGTGAGAGTGGTAA+AGG | - | chr3_2:57134692-57134711 | Msa0413010:intron | 40.0% | |
| ATGAAGGTGAGAGTGGTAAA+GGG | - | chr3_2:57134693-57134712 | Msa0413010:intron | 40.0% | |
| GGTAAAGGGTTGAAATCCAA+TGG | - | chr3_2:57134707-57134726 | Msa0413010:intron | 40.0% | |
| AAATCACCAACACTTCGCAT+CGG | - | chr3_2:57134834-57134853 | Msa0413010:intron | 40.0% | |
| GTTGAAAGCAAGGAATTGCA+AGG | - | chr3_2:57134910-57134929 | Msa0413010:intron | 40.0% | |
| !! | AGGAAGTTGTAGTTGGTGAA+AGG | - | chr3_2:57134930-57134949 | Msa0413010:intron | 40.0% |
| TTCTTTATCAAATGAGGCCG+AGG | - | chr3_2:57135309-57135328 | Msa0413010:CDS | 40.0% | |
| GATTGAAATTGAGGTTGCCT+CGG | + | chr3_2:57135329-57135348 | None:intergenic | 40.0% | |
| ! | GAAAGAGAAGTGCAGTTACA+AGG | - | chr3_2:57135683-57135702 | Msa0413010:CDS | 40.0% |
| CTAGTTGAAGATGAATTGGG+TGG | - | chr3_2:57135738-57135757 | Msa0413010:CDS | 40.0% | |
| !! | CGAATCTTTTGGAAGGTTTC+CGG | + | chr3_2:57134351-57134370 | None:intergenic | 40.0% |
| ! | GATTCGACGAATCTTTTGGA+AGG | + | chr3_2:57134358-57134377 | None:intergenic | 40.0% |
| !! | GTGCTTAGCTTTGGAAATGA+AGG | - | chr3_2:57134677-57134696 | Msa0413010:intron | 40.0% |
| TTTGGAAATGAAGGTGAGAG+TGG | - | chr3_2:57134686-57134705 | Msa0413010:intron | 40.0% | |
| AATGAAGGTGAGAGTGGTAA+AGG | - | chr3_2:57134692-57134711 | Msa0413010:intron | 40.0% | |
| ATGAAGGTGAGAGTGGTAAA+GGG | - | chr3_2:57134693-57134712 | Msa0413010:intron | 40.0% | |
| GGTAAAGGGTTGAAATCCAA+TGG | - | chr3_2:57134707-57134726 | Msa0413010:intron | 40.0% | |
| AAATCACCAACACTTCGCAT+CGG | - | chr3_2:57134834-57134853 | Msa0413010:intron | 40.0% | |
| GTTGAAAGCAAGGAATTGCA+AGG | - | chr3_2:57134910-57134929 | Msa0413010:intron | 40.0% | |
| !! | AGGAAGTTGTAGTTGGTGAA+AGG | - | chr3_2:57134930-57134949 | Msa0413010:intron | 40.0% |
| TTCTTTATCAAATGAGGCCG+AGG | - | chr3_2:57135309-57135328 | Msa0413010:CDS | 40.0% | |
| GATTGAAATTGAGGTTGCCT+CGG | + | chr3_2:57135329-57135348 | None:intergenic | 40.0% | |
| ! | GAAAGAGAAGTGCAGTTACA+AGG | - | chr3_2:57135683-57135702 | Msa0413010:CDS | 40.0% |
| CTAGTTGAAGATGAATTGGG+TGG | - | chr3_2:57135738-57135757 | Msa0413010:CDS | 40.0% | |
| !!! | GTTTTGGAGCTGCTACACAT+TGG | + | chr3_2:57134281-57134300 | None:intergenic | 45.0% |
| ! | ACATCCTGTAGTGGTGGTTT+TGG | + | chr3_2:57134297-57134316 | None:intergenic | 45.0% |
| GCAAAGAATCTTGCGCATGA+TGG | + | chr3_2:57134327-57134346 | None:intergenic | 45.0% | |
| ATGCGCAAGATTCTTTGCTC+CGG | - | chr3_2:57134329-57134348 | Msa0413010:CDS | 45.0% | |
| ATCAACCTTGCCACTATAGG+AGG | + | chr3_2:57134461-57134480 | None:intergenic | 45.0% | |
| TCCTATAGTGGCAAGGTTGA+TGG | - | chr3_2:57134460-57134479 | Msa0413010:CDS | 45.0% | |
| ! | CCTATAGTGGCAAGGTTGAT+GGG | - | chr3_2:57134461-57134480 | Msa0413010:CDS | 45.0% |
| CTTAAACCGATGCGAAGTGT+TGG | + | chr3_2:57134843-57134862 | None:intergenic | 45.0% | |
| !! | CAACACTTCGCATCGGTTTA+AGG | - | chr3_2:57134841-57134860 | Msa0413010:intron | 45.0% |
| GTGAAAGGCTGAAGAAGAGA+AGG | - | chr3_2:57134945-57134964 | Msa0413010:intron | 45.0% | |
| CTGTTCTTGAATTTGAGCGC+AGG | - | chr3_2:57135047-57135066 | Msa0413010:intron | 45.0% | |
| GGGATAGATTCTGTAGCAGT+TGG | - | chr3_2:57135525-57135544 | Msa0413010:CDS | 45.0% | |
| !!! | GTTTTGGAGCTGCTACACAT+TGG | + | chr3_2:57134281-57134300 | None:intergenic | 45.0% |
| ! | ACATCCTGTAGTGGTGGTTT+TGG | + | chr3_2:57134297-57134316 | None:intergenic | 45.0% |
| GCAAAGAATCTTGCGCATGA+TGG | + | chr3_2:57134327-57134346 | None:intergenic | 45.0% | |
| ATGCGCAAGATTCTTTGCTC+CGG | - | chr3_2:57134329-57134348 | Msa0413010:CDS | 45.0% | |
| ATCAACCTTGCCACTATAGG+AGG | + | chr3_2:57134461-57134480 | None:intergenic | 45.0% | |
| TCCTATAGTGGCAAGGTTGA+TGG | - | chr3_2:57134460-57134479 | Msa0413010:CDS | 45.0% | |
| ! | CCTATAGTGGCAAGGTTGAT+GGG | - | chr3_2:57134461-57134480 | Msa0413010:CDS | 45.0% |
| CTTAAACCGATGCGAAGTGT+TGG | + | chr3_2:57134843-57134862 | None:intergenic | 45.0% | |
| !! | CAACACTTCGCATCGGTTTA+AGG | - | chr3_2:57134841-57134860 | Msa0413010:intron | 45.0% |
| GTGAAAGGCTGAAGAAGAGA+AGG | - | chr3_2:57134945-57134964 | Msa0413010:intron | 45.0% | |
| CTGTTCTTGAATTTGAGCGC+AGG | - | chr3_2:57135047-57135066 | Msa0413010:intron | 45.0% | |
| GGGATAGATTCTGTAGCAGT+TGG | - | chr3_2:57135525-57135544 | Msa0413010:CDS | 45.0% | |
| TTGGAGCTGCTACACATTGG+TGG | + | chr3_2:57134278-57134297 | None:intergenic | 50.0% | |
| AGCTCCAAAACCACCACTAC+AGG | - | chr3_2:57134290-57134309 | Msa0413010:exon | 50.0% | |
| TGTGAGACATCCTGTAGTGG+TGG | + | chr3_2:57134303-57134322 | None:intergenic | 50.0% | |
| TACTCCTCCTCCTCCTATAG+TGG | - | chr3_2:57134448-57134467 | Msa0413010:CDS | 50.0% | |
| AACCTTGCCACTATAGGAGG+AGG | + | chr3_2:57134458-57134477 | None:intergenic | 50.0% | |
| CCCATCAACCTTGCCACTAT+AGG | + | chr3_2:57134464-57134483 | None:intergenic | 50.0% | |
| ! | GTACCTTTTGCGTCGAAACC+AGG | - | chr3_2:57134503-57134522 | Msa0413010:CDS | 50.0% |
| GAACCTGGTTTCGACGCAAA+AGG | + | chr3_2:57134509-57134528 | None:intergenic | 50.0% | |
| TTGCTACGCGAAAGTGAACC+TGG | + | chr3_2:57134524-57134543 | None:intergenic | 50.0% | |
| TTGACACCGGAGCTAGAAAC+CGG | - | chr3_2:57135567-57135586 | Msa0413010:CDS | 50.0% | |
| TCGCATACGAATGTGCTTGC+CGG | + | chr3_2:57135589-57135608 | None:intergenic | 50.0% | |
| TTGGAGCTGCTACACATTGG+TGG | + | chr3_2:57134278-57134297 | None:intergenic | 50.0% | |
| AGCTCCAAAACCACCACTAC+AGG | - | chr3_2:57134290-57134309 | Msa0413010:exon | 50.0% | |
| TGTGAGACATCCTGTAGTGG+TGG | + | chr3_2:57134303-57134322 | None:intergenic | 50.0% | |
| TACTCCTCCTCCTCCTATAG+TGG | - | chr3_2:57134448-57134467 | Msa0413010:CDS | 50.0% | |
| AACCTTGCCACTATAGGAGG+AGG | + | chr3_2:57134458-57134477 | None:intergenic | 50.0% | |
| CCCATCAACCTTGCCACTAT+AGG | + | chr3_2:57134464-57134483 | None:intergenic | 50.0% | |
| ! | GTACCTTTTGCGTCGAAACC+AGG | - | chr3_2:57134503-57134522 | Msa0413010:CDS | 50.0% |
| GAACCTGGTTTCGACGCAAA+AGG | + | chr3_2:57134509-57134528 | None:intergenic | 50.0% | |
| TTGCTACGCGAAAGTGAACC+TGG | + | chr3_2:57134524-57134543 | None:intergenic | 50.0% | |
| TTGACACCGGAGCTAGAAAC+CGG | - | chr3_2:57135567-57135586 | Msa0413010:CDS | 50.0% | |
| TCGCATACGAATGTGCTTGC+CGG | + | chr3_2:57135589-57135608 | None:intergenic | 50.0% | |
| GGCTGTGAGACATCCTGTAG+TGG | + | chr3_2:57134306-57134325 | None:intergenic | 55.0% | |
| CTTGCCACTATAGGAGGAGG+AGG | + | chr3_2:57134455-57134474 | None:intergenic | 55.0% | |
| CTCCTCCTCCTATAGTGGCA+AGG | - | chr3_2:57134453-57134472 | Msa0413010:CDS | 55.0% | |
| GGCTGAAGAAGAGAAGGACG+AGG | - | chr3_2:57134951-57134970 | Msa0413010:intron | 55.0% | |
| !! | TGCTTGCCGGTTTCTAGCTC+CGG | + | chr3_2:57135576-57135595 | None:intergenic | 55.0% |
| GGCTGTGAGACATCCTGTAG+TGG | + | chr3_2:57134306-57134325 | None:intergenic | 55.0% | |
| CTTGCCACTATAGGAGGAGG+AGG | + | chr3_2:57134455-57134474 | None:intergenic | 55.0% | |
| CTCCTCCTCCTATAGTGGCA+AGG | - | chr3_2:57134453-57134472 | Msa0413010:CDS | 55.0% | |
| GGCTGAAGAAGAGAAGGACG+AGG | - | chr3_2:57134951-57134970 | Msa0413010:intron | 55.0% | |
| !! | TGCTTGCCGGTTTCTAGCTC+CGG | + | chr3_2:57135576-57135595 | None:intergenic | 55.0% |
| ! | GAGCGCAGGTCTTGTGTAGC+AGG | - | chr3_2:57135061-57135080 | Msa0413010:intron | 60.0% |
| ! | GAGCGCAGGTCTTGTGTAGC+AGG | - | chr3_2:57135061-57135080 | Msa0413010:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 57134212 | 57135967 | 57134212 | ID=Msa0413010;Name=Msa0413010 |
| chr3_2 | mRNA | 57134212 | 57135967 | 57134212 | ID=Msa0413010-mRNA-1;Parent=Msa0413010;Name=Msa0413010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.5|1|1|1|2|83|409 |
| chr3_2 | exon | 57134212 | 57134653 | 57134212 | ID=Msa0413010-mRNA-1:exon:11639;Parent=Msa0413010-mRNA-1 |
| chr3_2 | exon | 57135097 | 57135967 | 57135097 | ID=Msa0413010-mRNA-1:exon:11638;Parent=Msa0413010-mRNA-1 |
| chr3_2 | CDS | 57135097 | 57135967 | 57135097 | ID=Msa0413010-mRNA-1:cds;Parent=Msa0413010-mRNA-1 |
| chr3_2 | CDS | 57134295 | 57134653 | 57134295 | ID=Msa0413010-mRNA-1:cds;Parent=Msa0413010-mRNA-1 |
| chr3_2 | three_prime_UTR | 57134212 | 57134294 | 57134212 | ID=Msa0413010-mRNA-1:three_prime_utr;Parent=Msa0413010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
