Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504610 | XP_013460265.1 | 91.443 | 409 | 35 | 0 | 1 | 409 | 1 | 409 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504610 | A0A072UXY4 | 91.443 | 409 | 35 | 0 | 1 | 409 | 1 | 409 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0504610 | 0.811664 | 6.253373e-51 | -8.615850e-47 |
| Msa0001940 | Msa0504610 | 0.813035 | 3.137814e-51 | -8.615850e-47 |
| Msa0005890 | Msa0504610 | 0.802983 | 4.329791e-49 | -8.615850e-47 |
| Msa0017510 | Msa0504610 | 0.809586 | 1.758718e-50 | -8.615850e-47 |
| Msa0017950 | Msa0504610 | 0.812291 | 4.564670e-51 | -8.615850e-47 |
| Msa0024550 | Msa0504610 | 0.847720 | 9.671814e-60 | -8.615850e-47 |
| Msa0076250 | Msa0504610 | 0.812321 | 4.496106e-51 | -8.615850e-47 |
| Msa0097770 | Msa0504610 | 0.815382 | 9.514592e-52 | -8.615850e-47 |
| Msa0110970 | Msa0504610 | 0.804269 | 2.342900e-49 | -8.615850e-47 |
| Msa0120400 | Msa0504610 | 0.840431 | 8.729695e-58 | -8.615850e-47 |
| Msa0124280 | Msa0504610 | 0.802291 | 6.016563e-49 | -8.615850e-47 |
| Msa0139060 | Msa0504610 | 0.813323 | 2.712938e-51 | -8.615850e-47 |
| Msa0157290 | Msa0504610 | 0.809657 | 1.698160e-50 | -8.615850e-47 |
| Msa0164330 | Msa0504610 | 0.815907 | 7.268093e-52 | -8.615850e-47 |
| Msa0225860 | Msa0504610 | 0.813560 | 2.405791e-51 | -8.615850e-47 |
| Msa0376350 | Msa0504610 | 0.808637 | 2.808038e-50 | -8.615850e-47 |
| Msa0378720 | Msa0504610 | 0.826328 | 2.881199e-54 | -8.615850e-47 |
| Msa0392510 | Msa0504610 | 0.820049 | 8.419651e-53 | -8.615850e-47 |
| Msa0403640 | Msa0504610 | 0.803777 | 2.965540e-49 | -8.615850e-47 |
| Msa0410650 | Msa0504610 | 0.804328 | 2.277161e-49 | -8.615850e-47 |
| Msa0413010 | Msa0504610 | 0.814853 | 1.246823e-51 | -8.615850e-47 |
| Msa0422850 | Msa0504610 | 0.801025 | 1.093665e-48 | -8.615850e-47 |
| Msa0422930 | Msa0504610 | 0.805042 | 1.615905e-49 | -8.615850e-47 |
| Msa0424790 | Msa0504610 | 0.811487 | 6.832315e-51 | -8.615850e-47 |
| Msa0464680 | Msa0504610 | 0.810992 | 8.749440e-51 | -8.615850e-47 |
| Msa0467490 | Msa0504610 | 0.814427 | 1.549647e-51 | -8.615850e-47 |
| Msa0474730 | Msa0504610 | 0.808066 | 3.716506e-50 | -8.615850e-47 |
| Msa0479170 | Msa0504610 | 0.807145 | 5.831179e-50 | -8.615850e-47 |
| Msa0481530 | Msa0504610 | 0.802744 | 4.851015e-49 | -8.615850e-47 |
| Msa0243100 | Msa0504610 | 0.802331 | 5.900928e-49 | -8.615850e-47 |
| Msa0244640 | Msa0504610 | 0.809827 | 1.560893e-50 | -8.615850e-47 |
| Msa0258310 | Msa0504610 | 0.825891 | 3.660392e-54 | -8.615850e-47 |
| Msa0261340 | Msa0504610 | 0.814210 | 1.730092e-51 | -8.615850e-47 |
| Msa0265850 | Msa0504610 | 0.804034 | 2.621854e-49 | -8.615850e-47 |
| Msa0283330 | Msa0504610 | 0.804272 | 2.339402e-49 | -8.615850e-47 |
| Msa0300320 | Msa0504610 | 0.802275 | 6.059709e-49 | -8.615850e-47 |
| Msa0363070 | Msa0504610 | 0.805967 | 1.033582e-49 | -8.615850e-47 |
| Msa0504610 | Msa0507680 | 0.800584 | 1.345691e-48 | -8.615850e-47 |
| Msa0504610 | Msa0516170 | 0.802949 | 4.400252e-49 | -8.615850e-47 |
| Msa0504610 | Msa0580370 | 0.814566 | 1.443300e-51 | -8.615850e-47 |
| Msa0504610 | Msa0585560 | 0.808519 | 2.976840e-50 | -8.615850e-47 |
| Msa0504610 | Msa0662240 | 0.810828 | 9.492450e-51 | -8.615850e-47 |
| Msa0504610 | Msa0663390 | 0.806597 | 7.613047e-50 | -8.615850e-47 |
| Msa0504610 | Msa0669320 | 0.804539 | 2.057810e-49 | -8.615850e-47 |
| Msa0504610 | Msa0677410 | 0.802632 | 5.116107e-49 | -8.615850e-47 |
| Msa0504610 | Msa0733390 | 0.830502 | 2.832915e-55 | -8.615850e-47 |
| Msa0504610 | Msa0741220 | 0.811264 | 7.637253e-51 | -8.615850e-47 |
| Msa0504610 | Msa0769180 | 0.802100 | 6.585032e-49 | -8.615850e-47 |
| Msa0504610 | Msa0795870 | 0.813027 | 3.149844e-51 | -8.615850e-47 |
| Msa0504610 | Msa0822870 | 0.825976 | 3.494036e-54 | -8.615850e-47 |
| Msa0504610 | Msa0828560 | 0.806033 | 1.001172e-49 | -8.615850e-47 |
| Msa0504610 | Msa0833650 | 0.816819 | 4.542699e-52 | -8.615850e-47 |
| Msa0504610 | Msa0861510 | 0.814197 | 1.741421e-51 | -8.615850e-47 |
| Msa0504610 | Msa0861600 | 0.814571 | 1.439750e-51 | -8.615850e-47 |
| Msa0504610 | Msa0861870 | 0.803539 | 3.321288e-49 | -8.615850e-47 |
| Msa0504610 | Msa0880140 | 0.804563 | 2.034070e-49 | -8.615850e-47 |
| Msa0504610 | Msa0945110 | 0.820198 | 7.784226e-53 | -8.615850e-47 |
| Msa0504610 | Msa0967380 | 0.843607 | 1.262553e-58 | -8.615850e-47 |
| Msa0504610 | Msa1019430 | 0.808613 | 2.842398e-50 | -8.615850e-47 |
| Msa0504610 | Msa1019470 | 0.810550 | 1.090137e-50 | -8.615850e-47 |
| Msa0504610 | Msa1041670 | 0.810090 | 1.369866e-50 | -8.615850e-47 |
| Msa0504610 | Msa1043370 | 0.823565 | 1.293791e-53 | -8.615850e-47 |
| Msa0504610 | Msa1085200 | 0.800866 | 1.178717e-48 | -8.615850e-47 |
| Msa0504610 | Msa1132840 | 0.818553 | 1.845513e-52 | -8.615850e-47 |
| Msa0504610 | Msa1140210 | 0.813507 | 2.471379e-51 | -8.615850e-47 |
| Msa0504610 | Msa1151910 | 0.805348 | 1.394114e-49 | -8.615850e-47 |
| Msa0504610 | Msa1157870 | 0.806449 | 8.183107e-50 | -8.615850e-47 |
| Msa0504610 | Msa1166560 | 0.811578 | 6.525759e-51 | -8.615850e-47 |
| Msa0504610 | Msa1189070 | 0.805743 | 1.152186e-49 | -8.615850e-47 |
| Msa0504610 | Msa1193170 | 0.819479 | 1.136632e-52 | -8.615850e-47 |
| Msa0504610 | Msa1199570 | 0.812258 | 4.640047e-51 | -8.615850e-47 |
| Msa0504610 | Msa1228200 | 0.802221 | 6.218339e-49 | -8.615850e-47 |
| Msa0504610 | Msa1236410 | 0.831963 | 1.238918e-55 | -8.615850e-47 |
| Msa0504610 | Msa1251930 | 0.810914 | 9.095798e-51 | -8.615850e-47 |
| Msa0504610 | Msa1267770 | 0.807615 | 4.636620e-50 | -8.615850e-47 |
| Msa0504610 | Msa1267900 | 0.807094 | 5.979379e-50 | -8.615850e-47 |
| Msa0504610 | Msa1300340 | 0.805666 | 1.195547e-49 | -8.615850e-47 |
| Msa0504610 | Msa1328710 | 0.814628 | 1.398763e-51 | -8.615850e-47 |
| Msa0504610 | Msa1330420 | 0.820149 | 7.990965e-53 | -8.615850e-47 |
| Msa0504610 | Msa1332070 | 0.802121 | 6.520245e-49 | -8.615850e-47 |
| Msa0504610 | Msa1353980 | 0.804783 | 1.830452e-49 | -8.615850e-47 |
| Msa0504610 | Msa1402400 | 0.806739 | 7.106328e-50 | -8.615850e-47 |
| Msa0504610 | Msa1451160 | 0.807240 | 5.566513e-50 | -8.615850e-47 |
| Msa0504610 | Msa1466540 | 0.808375 | 3.193652e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504610 | MtrunA17_Chr3g0105161 | 91.443 | 409 | 35 | 0 | 1 | 409 | 1 | 409 | 0.0 | 712 |
| Msa0504610 | MtrunA17_Chr5g0430231 | 35.115 | 393 | 163 | 14 | 27 | 408 | 28 | 339 | 2.97e-38 | 140 |
| Msa0504610 | MtrunA17_Chr4g0006251 | 25.185 | 405 | 244 | 14 | 34 | 408 | 10 | 385 | 1.12e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504610 | AT5G58630.1 | 27.723 | 404 | 214 | 19 | 28 | 407 | 17 | 366 | 3.35e-19 | 89.0 |
Find 64 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAACTCTTTGGACTATT+TGG | 0.114522 | 3_4:-49310883 | Msa0504610:CDS |
| CAATACTTCGCATCGGTTTA+AGG | 0.140698 | 3_4:-49310589 | Msa0504610:CDS |
| ATGAATGAACAAAGTGATTT+AGG | 0.228881 | 3_4:-49309581 | Msa0504610:CDS |
| GTTTGATTCGACGAATCTTT+TGG | 0.308174 | 3_4:+49311071 | None:intergenic |
| ATGAACTCTTTGGACTATTT+GGG | 0.321962 | 3_4:-49310882 | Msa0504610:CDS |
| TCCTATAGTGGCAAGGTTGA+TGG | 0.329973 | 3_4:-49310970 | Msa0504610:CDS |
| ACATCCTGTAGTGGTGGTTT+TGG | 0.332210 | 3_4:+49311136 | None:intergenic |
| CAGACTAGTTGAAGATGAAT+TGG | 0.352096 | 3_4:-49309633 | Msa0504610:CDS |
| CTTATACCACTTTATTCATA+AGG | 0.363564 | 3_4:+49309439 | None:intergenic |
| TCGCATACGAATGTGCTTGC+CGG | 0.369602 | 3_4:+49309781 | None:intergenic |
| TGCTTGCCGGTTTCAAGCTC+TGG | 0.375227 | 3_4:+49309794 | None:intergenic |
| TGATCAATTGTTGAATGAAA+TGG | 0.392032 | 3_4:-49309525 | Msa0504610:CDS |
| TAGCAAGTCAATGAACTCTT+TGG | 0.393058 | 3_4:-49310892 | Msa0504610:CDS |
| ACTATTTGGGAGAAAGTAAT+GGG | 0.400265 | 3_4:-49310869 | Msa0504610:CDS |
| GTTGATGGGTTTAGAATCAA+TGG | 0.406142 | 3_4:-49310955 | Msa0504610:CDS |
| ATGATGAGAAAATGAACAAA+AGG | 0.409187 | 3_4:-49310638 | Msa0504610:CDS |
| TGAATAAAGTGGTATAAGAT+TGG | 0.418295 | 3_4:-49309434 | Msa0504610:three_prime_UTR |
| GAGCGCAGGTCTTGTGTAGC+AGG | 0.425211 | 3_4:-49310369 | Msa0504610:intron |
| GTACTTAGCTTTGGAAATGA+AGG | 0.433367 | 3_4:-49310753 | Msa0504610:CDS |
| TCAAATTCAAGAACAGAAAC+AGG | 0.433530 | 3_4:+49310390 | None:intergenic |
| CCCATCAACCTTGCCACTAT+AGG | 0.448438 | 3_4:+49310969 | None:intergenic |
| AGCTCCAAAACCACCACTAC+AGG | 0.452085 | 3_4:-49311140 | Msa0504610:CDS |
| GACTATTTGGGAGAAAGTAA+TGG | 0.465825 | 3_4:-49310870 | Msa0504610:CDS |
| CCTATAGTGGCAAGGTTGAT+GGG | 0.467036 | 3_4:-49310969 | Msa0504610:CDS |
| CTTGATGATTGATGAGAAGA+AGG | 0.472348 | 3_4:-49309747 | Msa0504610:CDS |
| CTTAAACCGATGCGAAGTAT+TGG | 0.487365 | 3_4:+49310590 | None:intergenic |
| TACTCCTCCTCCTCCTATAG+TGG | 0.488986 | 3_4:-49310982 | Msa0504610:CDS |
| GGGATAGATTCTGTAGCAGT+TGG | 0.489760 | 3_4:-49309842 | Msa0504610:CDS |
| TTGACACCAGAGCTTGAAAC+CGG | 0.493051 | 3_4:-49309800 | Msa0504610:CDS |
| AATTGCAAGGAAGTTGTAGT+TGG | 0.497467 | 3_4:-49310507 | Msa0504610:CDS |
| AATGAAGGTGAGAGTGGTAA+AGG | 0.501762 | 3_4:-49310738 | Msa0504610:CDS |
| ACATTTGAACAAGATGAAGT+TGG | 0.503916 | 3_4:+49311182 | None:intergenic |
| GATTGATGAGAAGAAGGATA+AGG | 0.510068 | 3_4:-49309741 | Msa0504610:CDS |
| TATAAACCTTATGAATAAAG+TGG | 0.515785 | 3_4:-49309445 | Msa0504610:three_prime_UTR |
| ATGCGCAAGATTCTTTGCTC+CGG | 0.516482 | 3_4:-49311101 | Msa0504610:CDS |
| TTGCTACGCGAAAGTGAACC+TGG | 0.516866 | 3_4:+49310909 | None:intergenic |
| AGTTTGCATCATAAGAGAGT+TGG | 0.518728 | 3_4:-49310837 | Msa0504610:CDS |
| CTGTTCTTGAATTTGAGCGC+AGG | 0.521187 | 3_4:-49310383 | Msa0504610:CDS |
| TCACTCATTTGAAAAGTTGG+TGG | 0.522619 | 3_4:+49310792 | None:intergenic |
| GAAAGAGAAGTGCAGTTACA+AGG | 0.524839 | 3_4:-49309684 | Msa0504610:CDS |
| TGATGAGAAAATGAACAAAA+GGG | 0.526745 | 3_4:-49310637 | Msa0504610:CDS |
| TTGGAGCTGCTACACATTGG+TGG | 0.527912 | 3_4:+49311155 | None:intergenic |
| ATTGAGAGCAACAAATATGA+AGG | 0.528001 | 3_4:-49309716 | Msa0504610:CDS |
| ATGAAGGTGAGAGTGGTAAA+GGG | 0.535390 | 3_4:-49310737 | Msa0504610:CDS |
| GAACCTGGTTTCGACGCAAA+AGG | 0.536176 | 3_4:+49310924 | None:intergenic |
| GCAAAGAATCTTGCGCATGA+TGG | 0.544886 | 3_4:+49311106 | None:intergenic |
| CTCCTCCTCCTATAGTGGCA+AGG | 0.548931 | 3_4:-49310977 | Msa0504610:CDS |
| TTGAGTAACTACTCACAAGT+TGG | 0.556609 | 3_4:-49309490 | Msa0504610:exon |
| CAGTTGAATTGTTGAAAGCA+AGG | 0.561633 | 3_4:-49310530 | Msa0504610:CDS |
| ATTTGCTGAATCAAATTCTG+TGG | 0.562096 | 3_4:+49311049 | None:intergenic |
| ATCAACCTTGCCACTATAGG+AGG | 0.564039 | 3_4:+49310972 | None:intergenic |
| GGTAAAGGGTTGAAATCCAA+TGG | 0.570024 | 3_4:-49310723 | Msa0504610:CDS |
| AACCTTGCCACTATAGGAGG+AGG | 0.571014 | 3_4:+49310975 | None:intergenic |
| CTTGCCACTATAGGAGGAGG+AGG | 0.572004 | 3_4:+49310978 | None:intergenic |
| TTTGGAAATGAAGGTGAGAG+TGG | 0.573933 | 3_4:-49310744 | Msa0504610:CDS |
| GTTGAAAGCAAGGAATTGCA+AGG | 0.577214 | 3_4:-49310520 | Msa0504610:CDS |
| AGACTAGTTGAAGATGAATT+GGG | 0.595377 | 3_4:-49309632 | Msa0504610:CDS |
| GTGAAAGGCTGAAGAAGAGA+AGG | 0.599596 | 3_4:-49310485 | Msa0504610:CDS |
| GGCTGAAGAAGAGAAGGACG+AGG | 0.623454 | 3_4:-49310479 | Msa0504610:CDS |
| AAATCACCAATACTTCGCAT+CGG | 0.624812 | 3_4:-49310596 | Msa0504610:CDS |
| GGCTGTGAGACATCCTGTAG+TGG | 0.633723 | 3_4:+49311127 | None:intergenic |
| TGTGAGACATCCTGTAGTGG+TGG | 0.637000 | 3_4:+49311130 | None:intergenic |
| AGGAAGTTGTAGTTGGTGAA+AGG | 0.652737 | 3_4:-49310500 | Msa0504610:CDS |
| CTAGTTGAAGATGAATTGGG+TGG | 0.660326 | 3_4:-49309629 | Msa0504610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATATATTTTTGC+AGG | - | chr3_4:49310777-49310796 | Msa0504610:CDS | 10.0% |
| !!! | TATATATATATATTTTTGCA+GGG | - | chr3_4:49310778-49310797 | Msa0504610:CDS | 10.0% |
| !!! | ATATATATATATATTTTTGC+AGG | - | chr3_4:49310777-49310796 | Msa0504610:CDS | 10.0% |
| !!! | TATATATATATATTTTTGCA+GGG | - | chr3_4:49310778-49310797 | Msa0504610:CDS | 10.0% |
| !!! | AATTTTTTTGTACTTAGCTT+TGG | - | chr3_4:49309878-49309897 | Msa0504610:intron | 20.0% |
| !! | AACATATTCTTTATCAAATG+AGG | - | chr3_4:49310513-49310532 | Msa0504610:CDS | 20.0% |
| !! | TATAAACCTTATGAATAAAG+TGG | - | chr3_4:49311195-49311214 | Msa0504610:CDS | 20.0% |
| !!! | AATTTTTTTGTACTTAGCTT+TGG | - | chr3_4:49309878-49309897 | Msa0504610:intron | 20.0% |
| !! | AACATATTCTTTATCAAATG+AGG | - | chr3_4:49310513-49310532 | Msa0504610:CDS | 20.0% |
| !! | TATAAACCTTATGAATAAAG+TGG | - | chr3_4:49311195-49311214 | Msa0504610:CDS | 20.0% |
| !! | TTTTCACTCATTTGAAAAGT+TGG | + | chr3_4:49309854-49309873 | None:intergenic | 25.0% |
| ! | ATGATGAGAAAATGAACAAA+AGG | - | chr3_4:49310002-49310021 | Msa0504610:intron | 25.0% |
| ! | TGATGAGAAAATGAACAAAA+GGG | - | chr3_4:49310003-49310022 | Msa0504610:intron | 25.0% |
| ! | TATACAAAATCTTATTGTCG+TGG | - | chr3_4:49310577-49310596 | Msa0504610:CDS | 25.0% |
| ! | CAAAAAATCAAGTTCATGTT+TGG | - | chr3_4:49311036-49311055 | Msa0504610:CDS | 25.0% |
| ! | ATGAATGAACAAAGTGATTT+AGG | - | chr3_4:49311059-49311078 | Msa0504610:CDS | 25.0% |
| ! | TGATCAATTGTTGAATGAAA+TGG | - | chr3_4:49311115-49311134 | Msa0504610:CDS | 25.0% |
| ! | CTTATACCACTTTATTCATA+AGG | + | chr3_4:49311204-49311223 | None:intergenic | 25.0% |
| ! | TGAATAAAGTGGTATAAGAT+TGG | - | chr3_4:49311206-49311225 | Msa0504610:CDS | 25.0% |
| !! | TTTTCACTCATTTGAAAAGT+TGG | + | chr3_4:49309854-49309873 | None:intergenic | 25.0% |
| ! | ATGATGAGAAAATGAACAAA+AGG | - | chr3_4:49310002-49310021 | Msa0504610:intron | 25.0% |
| ! | TGATGAGAAAATGAACAAAA+GGG | - | chr3_4:49310003-49310022 | Msa0504610:intron | 25.0% |
| ! | TATACAAAATCTTATTGTCG+TGG | - | chr3_4:49310577-49310596 | Msa0504610:CDS | 25.0% |
| ! | CAAAAAATCAAGTTCATGTT+TGG | - | chr3_4:49311036-49311055 | Msa0504610:CDS | 25.0% |
| ! | ATGAATGAACAAAGTGATTT+AGG | - | chr3_4:49311059-49311078 | Msa0504610:CDS | 25.0% |
| ! | TGATCAATTGTTGAATGAAA+TGG | - | chr3_4:49311115-49311134 | Msa0504610:CDS | 25.0% |
| ! | CTTATACCACTTTATTCATA+AGG | + | chr3_4:49311204-49311223 | None:intergenic | 25.0% |
| ! | TGAATAAAGTGGTATAAGAT+TGG | - | chr3_4:49311206-49311225 | Msa0504610:CDS | 25.0% |
| ACATTTGAACAAGATGAAGT+TGG | + | chr3_4:49309461-49309480 | None:intergenic | 30.0% | |
| ! | ATTTGCTGAATCAAATTCTG+TGG | + | chr3_4:49309594-49309613 | None:intergenic | 30.0% |
| AATGAACTCTTTGGACTATT+TGG | - | chr3_4:49309757-49309776 | Msa0504610:CDS | 30.0% | |
| ATGAACTCTTTGGACTATTT+GGG | - | chr3_4:49309758-49309777 | Msa0504610:CDS | 30.0% | |
| ACTATTTGGGAGAAAGTAAT+GGG | - | chr3_4:49309771-49309790 | Msa0504610:CDS | 30.0% | |
| !!! | CATTTGCTTTTTTCTTCCAT+TGG | + | chr3_4:49309936-49309955 | None:intergenic | 30.0% |
| TCAAATTCAAGAACAGAAAC+AGG | + | chr3_4:49310253-49310272 | None:intergenic | 30.0% | |
| AACGTATGATTAAAATCACG+TGG | + | chr3_4:49310427-49310446 | None:intergenic | 30.0% | |
| AATTTCAATCACATTGCGAT+CGG | - | chr3_4:49310549-49310568 | Msa0504610:CDS | 30.0% | |
| ACAACCAATGTTATACGATA+AGG | + | chr3_4:49310622-49310641 | None:intergenic | 30.0% | |
| ATTGAGAGCAACAAATATGA+AGG | - | chr3_4:49310924-49310943 | Msa0504610:CDS | 30.0% | |
| !! | ACAAGGAGTATGTAGATTTT+TGG | - | chr3_4:49310973-49310992 | Msa0504610:CDS | 30.0% |
| !! | CAAGGAGTATGTAGATTTTT+GGG | - | chr3_4:49310974-49310993 | Msa0504610:CDS | 30.0% |
| !! | AAGGAGTATGTAGATTTTTG+GGG | - | chr3_4:49310975-49310994 | Msa0504610:CDS | 30.0% |
| ! | AGACTAGTTGAAGATGAATT+GGG | - | chr3_4:49311008-49311027 | Msa0504610:CDS | 30.0% |
| ACATTTGAACAAGATGAAGT+TGG | + | chr3_4:49309461-49309480 | None:intergenic | 30.0% | |
| ! | ATTTGCTGAATCAAATTCTG+TGG | + | chr3_4:49309594-49309613 | None:intergenic | 30.0% |
| AATGAACTCTTTGGACTATT+TGG | - | chr3_4:49309757-49309776 | Msa0504610:CDS | 30.0% | |
| ATGAACTCTTTGGACTATTT+GGG | - | chr3_4:49309758-49309777 | Msa0504610:CDS | 30.0% | |
| ACTATTTGGGAGAAAGTAAT+GGG | - | chr3_4:49309771-49309790 | Msa0504610:CDS | 30.0% | |
| !!! | CATTTGCTTTTTTCTTCCAT+TGG | + | chr3_4:49309936-49309955 | None:intergenic | 30.0% |
| TCAAATTCAAGAACAGAAAC+AGG | + | chr3_4:49310253-49310272 | None:intergenic | 30.0% | |
| AACGTATGATTAAAATCACG+TGG | + | chr3_4:49310427-49310446 | None:intergenic | 30.0% | |
| AATTTCAATCACATTGCGAT+CGG | - | chr3_4:49310549-49310568 | Msa0504610:CDS | 30.0% | |
| ACAACCAATGTTATACGATA+AGG | + | chr3_4:49310622-49310641 | None:intergenic | 30.0% | |
| ATTGAGAGCAACAAATATGA+AGG | - | chr3_4:49310924-49310943 | Msa0504610:CDS | 30.0% | |
| !! | ACAAGGAGTATGTAGATTTT+TGG | - | chr3_4:49310973-49310992 | Msa0504610:CDS | 30.0% |
| !! | CAAGGAGTATGTAGATTTTT+GGG | - | chr3_4:49310974-49310993 | Msa0504610:CDS | 30.0% |
| !! | AAGGAGTATGTAGATTTTTG+GGG | - | chr3_4:49310975-49310994 | Msa0504610:CDS | 30.0% |
| ! | AGACTAGTTGAAGATGAATT+GGG | - | chr3_4:49311008-49311027 | Msa0504610:CDS | 30.0% |
| !! | GTTTGATTCGACGAATCTTT+TGG | + | chr3_4:49309572-49309591 | None:intergenic | 35.0% |
| !! | GTTGATGGGTTTAGAATCAA+TGG | - | chr3_4:49309685-49309704 | Msa0504610:CDS | 35.0% |
| TAGCAAGTCAATGAACTCTT+TGG | - | chr3_4:49309748-49309767 | Msa0504610:CDS | 35.0% | |
| GACTATTTGGGAGAAAGTAA+TGG | - | chr3_4:49309770-49309789 | Msa0504610:CDS | 35.0% | |
| AGTTTGCATCATAAGAGAGT+TGG | - | chr3_4:49309803-49309822 | Msa0504610:CDS | 35.0% | |
| TCACTCATTTGAAAAGTTGG+TGG | + | chr3_4:49309851-49309870 | None:intergenic | 35.0% | |
| !! | GTACTTAGCTTTGGAAATGA+AGG | - | chr3_4:49309887-49309906 | Msa0504610:intron | 35.0% |
| AAATCACCAATACTTCGCAT+CGG | - | chr3_4:49310044-49310063 | Msa0504610:intron | 35.0% | |
| CAGTTGAATTGTTGAAAGCA+AGG | - | chr3_4:49310110-49310129 | Msa0504610:intron | 35.0% | |
| AATTGCAAGGAAGTTGTAGT+TGG | - | chr3_4:49310133-49310152 | Msa0504610:intron | 35.0% | |
| CGTTACACTGAGTAAAATCA+CGG | - | chr3_4:49310443-49310462 | Msa0504610:CDS | 35.0% | |
| TCGCAATGTGATTGAAATTG+AGG | + | chr3_4:49310548-49310567 | None:intergenic | 35.0% | |
| !! | TATTGTCGTGGACTAGATTA+CGG | - | chr3_4:49310589-49310608 | Msa0504610:CDS | 35.0% |
| CAGACCTTATCGTATAACAT+TGG | - | chr3_4:49310615-49310634 | Msa0504610:CDS | 35.0% | |
| ! | CTTGATGATTGATGAGAAGA+AGG | - | chr3_4:49310893-49310912 | Msa0504610:CDS | 35.0% |
| GATTGATGAGAAGAAGGATA+AGG | - | chr3_4:49310899-49310918 | Msa0504610:CDS | 35.0% | |
| ! | CAGACTAGTTGAAGATGAAT+TGG | - | chr3_4:49311007-49311026 | Msa0504610:CDS | 35.0% |
| TTGAGTAACTACTCACAAGT+TGG | - | chr3_4:49311150-49311169 | Msa0504610:CDS | 35.0% | |
| !! | GTTTGATTCGACGAATCTTT+TGG | + | chr3_4:49309572-49309591 | None:intergenic | 35.0% |
| !! | GTTGATGGGTTTAGAATCAA+TGG | - | chr3_4:49309685-49309704 | Msa0504610:CDS | 35.0% |
| TAGCAAGTCAATGAACTCTT+TGG | - | chr3_4:49309748-49309767 | Msa0504610:CDS | 35.0% | |
| GACTATTTGGGAGAAAGTAA+TGG | - | chr3_4:49309770-49309789 | Msa0504610:CDS | 35.0% | |
| AGTTTGCATCATAAGAGAGT+TGG | - | chr3_4:49309803-49309822 | Msa0504610:CDS | 35.0% | |
| TCACTCATTTGAAAAGTTGG+TGG | + | chr3_4:49309851-49309870 | None:intergenic | 35.0% | |
| !! | GTACTTAGCTTTGGAAATGA+AGG | - | chr3_4:49309887-49309906 | Msa0504610:intron | 35.0% |
| AAATCACCAATACTTCGCAT+CGG | - | chr3_4:49310044-49310063 | Msa0504610:intron | 35.0% | |
| CAGTTGAATTGTTGAAAGCA+AGG | - | chr3_4:49310110-49310129 | Msa0504610:intron | 35.0% | |
| AATTGCAAGGAAGTTGTAGT+TGG | - | chr3_4:49310133-49310152 | Msa0504610:intron | 35.0% | |
| CGTTACACTGAGTAAAATCA+CGG | - | chr3_4:49310443-49310462 | Msa0504610:CDS | 35.0% | |
| TCGCAATGTGATTGAAATTG+AGG | + | chr3_4:49310548-49310567 | None:intergenic | 35.0% | |
| !! | TATTGTCGTGGACTAGATTA+CGG | - | chr3_4:49310589-49310608 | Msa0504610:CDS | 35.0% |
| CAGACCTTATCGTATAACAT+TGG | - | chr3_4:49310615-49310634 | Msa0504610:CDS | 35.0% | |
| ! | CTTGATGATTGATGAGAAGA+AGG | - | chr3_4:49310893-49310912 | Msa0504610:CDS | 35.0% |
| GATTGATGAGAAGAAGGATA+AGG | - | chr3_4:49310899-49310918 | Msa0504610:CDS | 35.0% | |
| ! | CAGACTAGTTGAAGATGAAT+TGG | - | chr3_4:49311007-49311026 | Msa0504610:CDS | 35.0% |
| TTGAGTAACTACTCACAAGT+TGG | - | chr3_4:49311150-49311169 | Msa0504610:CDS | 35.0% | |
| !! | CGAATCTTTTGGAAGGTTTC+CGG | + | chr3_4:49309561-49309580 | None:intergenic | 40.0% |
| ! | GATTCGACGAATCTTTTGGA+AGG | + | chr3_4:49309568-49309587 | None:intergenic | 40.0% |
| TTTGGAAATGAAGGTGAGAG+TGG | - | chr3_4:49309896-49309915 | Msa0504610:intron | 40.0% | |
| AATGAAGGTGAGAGTGGTAA+AGG | - | chr3_4:49309902-49309921 | Msa0504610:intron | 40.0% | |
| ATGAAGGTGAGAGTGGTAAA+GGG | - | chr3_4:49309903-49309922 | Msa0504610:intron | 40.0% | |
| GGTAAAGGGTTGAAATCCAA+TGG | - | chr3_4:49309917-49309936 | Msa0504610:intron | 40.0% | |
| CTTAAACCGATGCGAAGTAT+TGG | + | chr3_4:49310053-49310072 | None:intergenic | 40.0% | |
| !! | CAATACTTCGCATCGGTTTA+AGG | - | chr3_4:49310051-49310070 | Msa0504610:intron | 40.0% |
| GTTGAAAGCAAGGAATTGCA+AGG | - | chr3_4:49310120-49310139 | Msa0504610:intron | 40.0% | |
| !! | AGGAAGTTGTAGTTGGTGAA+AGG | - | chr3_4:49310140-49310159 | Msa0504610:intron | 40.0% |
| TTCTTTATCAAATGAGGCCG+AGG | - | chr3_4:49310519-49310538 | Msa0504610:CDS | 40.0% | |
| GATTGAAATTGAGGTTGCCT+CGG | + | chr3_4:49310539-49310558 | None:intergenic | 40.0% | |
| ! | GAAAGAGAAGTGCAGTTACA+AGG | - | chr3_4:49310956-49310975 | Msa0504610:CDS | 40.0% |
| CTAGTTGAAGATGAATTGGG+TGG | - | chr3_4:49311011-49311030 | Msa0504610:CDS | 40.0% | |
| !! | CGAATCTTTTGGAAGGTTTC+CGG | + | chr3_4:49309561-49309580 | None:intergenic | 40.0% |
| ! | GATTCGACGAATCTTTTGGA+AGG | + | chr3_4:49309568-49309587 | None:intergenic | 40.0% |
| TTTGGAAATGAAGGTGAGAG+TGG | - | chr3_4:49309896-49309915 | Msa0504610:intron | 40.0% | |
| AATGAAGGTGAGAGTGGTAA+AGG | - | chr3_4:49309902-49309921 | Msa0504610:intron | 40.0% | |
| ATGAAGGTGAGAGTGGTAAA+GGG | - | chr3_4:49309903-49309922 | Msa0504610:intron | 40.0% | |
| GGTAAAGGGTTGAAATCCAA+TGG | - | chr3_4:49309917-49309936 | Msa0504610:intron | 40.0% | |
| CTTAAACCGATGCGAAGTAT+TGG | + | chr3_4:49310053-49310072 | None:intergenic | 40.0% | |
| !! | CAATACTTCGCATCGGTTTA+AGG | - | chr3_4:49310051-49310070 | Msa0504610:intron | 40.0% |
| GTTGAAAGCAAGGAATTGCA+AGG | - | chr3_4:49310120-49310139 | Msa0504610:intron | 40.0% | |
| !! | AGGAAGTTGTAGTTGGTGAA+AGG | - | chr3_4:49310140-49310159 | Msa0504610:intron | 40.0% |
| TTCTTTATCAAATGAGGCCG+AGG | - | chr3_4:49310519-49310538 | Msa0504610:CDS | 40.0% | |
| GATTGAAATTGAGGTTGCCT+CGG | + | chr3_4:49310539-49310558 | None:intergenic | 40.0% | |
| ! | GAAAGAGAAGTGCAGTTACA+AGG | - | chr3_4:49310956-49310975 | Msa0504610:CDS | 40.0% |
| CTAGTTGAAGATGAATTGGG+TGG | - | chr3_4:49311011-49311030 | Msa0504610:CDS | 40.0% | |
| !!! | GTTTTGGAGCTGCTACACAT+TGG | + | chr3_4:49309491-49309510 | None:intergenic | 45.0% |
| ! | ACATCCTGTAGTGGTGGTTT+TGG | + | chr3_4:49309507-49309526 | None:intergenic | 45.0% |
| GCAAAGAATCTTGCGCATGA+TGG | + | chr3_4:49309537-49309556 | None:intergenic | 45.0% | |
| ATGCGCAAGATTCTTTGCTC+CGG | - | chr3_4:49309539-49309558 | Msa0504610:CDS | 45.0% | |
| ATCAACCTTGCCACTATAGG+AGG | + | chr3_4:49309671-49309690 | None:intergenic | 45.0% | |
| TCCTATAGTGGCAAGGTTGA+TGG | - | chr3_4:49309670-49309689 | Msa0504610:CDS | 45.0% | |
| ! | CCTATAGTGGCAAGGTTGAT+GGG | - | chr3_4:49309671-49309690 | Msa0504610:CDS | 45.0% |
| GTGAAAGGCTGAAGAAGAGA+AGG | - | chr3_4:49310155-49310174 | Msa0504610:intron | 45.0% | |
| CTGTTCTTGAATTTGAGCGC+AGG | - | chr3_4:49310257-49310276 | Msa0504610:intron | 45.0% | |
| GGGATAGATTCTGTAGCAGT+TGG | - | chr3_4:49310798-49310817 | Msa0504610:CDS | 45.0% | |
| TTGACACCAGAGCTTGAAAC+CGG | - | chr3_4:49310840-49310859 | Msa0504610:CDS | 45.0% | |
| !!! | GTTTTGGAGCTGCTACACAT+TGG | + | chr3_4:49309491-49309510 | None:intergenic | 45.0% |
| ! | ACATCCTGTAGTGGTGGTTT+TGG | + | chr3_4:49309507-49309526 | None:intergenic | 45.0% |
| GCAAAGAATCTTGCGCATGA+TGG | + | chr3_4:49309537-49309556 | None:intergenic | 45.0% | |
| ATGCGCAAGATTCTTTGCTC+CGG | - | chr3_4:49309539-49309558 | Msa0504610:CDS | 45.0% | |
| ATCAACCTTGCCACTATAGG+AGG | + | chr3_4:49309671-49309690 | None:intergenic | 45.0% | |
| TCCTATAGTGGCAAGGTTGA+TGG | - | chr3_4:49309670-49309689 | Msa0504610:CDS | 45.0% | |
| ! | CCTATAGTGGCAAGGTTGAT+GGG | - | chr3_4:49309671-49309690 | Msa0504610:CDS | 45.0% |
| GTGAAAGGCTGAAGAAGAGA+AGG | - | chr3_4:49310155-49310174 | Msa0504610:intron | 45.0% | |
| CTGTTCTTGAATTTGAGCGC+AGG | - | chr3_4:49310257-49310276 | Msa0504610:intron | 45.0% | |
| GGGATAGATTCTGTAGCAGT+TGG | - | chr3_4:49310798-49310817 | Msa0504610:CDS | 45.0% | |
| TTGACACCAGAGCTTGAAAC+CGG | - | chr3_4:49310840-49310859 | Msa0504610:CDS | 45.0% | |
| TTGGAGCTGCTACACATTGG+TGG | + | chr3_4:49309488-49309507 | None:intergenic | 50.0% | |
| AGCTCCAAAACCACCACTAC+AGG | - | chr3_4:49309500-49309519 | Msa0504610:exon | 50.0% | |
| TGTGAGACATCCTGTAGTGG+TGG | + | chr3_4:49309513-49309532 | None:intergenic | 50.0% | |
| TACTCCTCCTCCTCCTATAG+TGG | - | chr3_4:49309658-49309677 | Msa0504610:CDS | 50.0% | |
| AACCTTGCCACTATAGGAGG+AGG | + | chr3_4:49309668-49309687 | None:intergenic | 50.0% | |
| CCCATCAACCTTGCCACTAT+AGG | + | chr3_4:49309674-49309693 | None:intergenic | 50.0% | |
| ! | GTACCTTTTGCGTCGAAACC+AGG | - | chr3_4:49309713-49309732 | Msa0504610:CDS | 50.0% |
| GAACCTGGTTTCGACGCAAA+AGG | + | chr3_4:49309719-49309738 | None:intergenic | 50.0% | |
| TTGCTACGCGAAAGTGAACC+TGG | + | chr3_4:49309734-49309753 | None:intergenic | 50.0% | |
| TCGCATACGAATGTGCTTGC+CGG | + | chr3_4:49310862-49310881 | None:intergenic | 50.0% | |
| TTGGAGCTGCTACACATTGG+TGG | + | chr3_4:49309488-49309507 | None:intergenic | 50.0% | |
| AGCTCCAAAACCACCACTAC+AGG | - | chr3_4:49309500-49309519 | Msa0504610:exon | 50.0% | |
| TGTGAGACATCCTGTAGTGG+TGG | + | chr3_4:49309513-49309532 | None:intergenic | 50.0% | |
| TACTCCTCCTCCTCCTATAG+TGG | - | chr3_4:49309658-49309677 | Msa0504610:CDS | 50.0% | |
| AACCTTGCCACTATAGGAGG+AGG | + | chr3_4:49309668-49309687 | None:intergenic | 50.0% | |
| CCCATCAACCTTGCCACTAT+AGG | + | chr3_4:49309674-49309693 | None:intergenic | 50.0% | |
| ! | GTACCTTTTGCGTCGAAACC+AGG | - | chr3_4:49309713-49309732 | Msa0504610:CDS | 50.0% |
| GAACCTGGTTTCGACGCAAA+AGG | + | chr3_4:49309719-49309738 | None:intergenic | 50.0% | |
| TTGCTACGCGAAAGTGAACC+TGG | + | chr3_4:49309734-49309753 | None:intergenic | 50.0% | |
| TCGCATACGAATGTGCTTGC+CGG | + | chr3_4:49310862-49310881 | None:intergenic | 50.0% | |
| GGCTGTGAGACATCCTGTAG+TGG | + | chr3_4:49309516-49309535 | None:intergenic | 55.0% | |
| CTTGCCACTATAGGAGGAGG+AGG | + | chr3_4:49309665-49309684 | None:intergenic | 55.0% | |
| CTCCTCCTCCTATAGTGGCA+AGG | - | chr3_4:49309663-49309682 | Msa0504610:CDS | 55.0% | |
| GGCTGAAGAAGAGAAGGACG+AGG | - | chr3_4:49310161-49310180 | Msa0504610:intron | 55.0% | |
| !! | TGCTTGCCGGTTTCAAGCTC+TGG | + | chr3_4:49310849-49310868 | None:intergenic | 55.0% |
| GGCTGTGAGACATCCTGTAG+TGG | + | chr3_4:49309516-49309535 | None:intergenic | 55.0% | |
| CTTGCCACTATAGGAGGAGG+AGG | + | chr3_4:49309665-49309684 | None:intergenic | 55.0% | |
| CTCCTCCTCCTATAGTGGCA+AGG | - | chr3_4:49309663-49309682 | Msa0504610:CDS | 55.0% | |
| GGCTGAAGAAGAGAAGGACG+AGG | - | chr3_4:49310161-49310180 | Msa0504610:intron | 55.0% | |
| !! | TGCTTGCCGGTTTCAAGCTC+TGG | + | chr3_4:49310849-49310868 | None:intergenic | 55.0% |
| ! | GAGCGCAGGTCTTGTGTAGC+AGG | - | chr3_4:49310271-49310290 | Msa0504610:intron | 60.0% |
| ! | GAGCGCAGGTCTTGTGTAGC+AGG | - | chr3_4:49310271-49310290 | Msa0504610:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 49309422 | 49311240 | 49309422 | ID=Msa0504610;Name=Msa0504610 |
| chr3_4 | mRNA | 49309422 | 49311240 | 49309422 | ID=Msa0504610-mRNA-1;Parent=Msa0504610;Name=Msa0504610-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.5|1|1|1|2|83|409 |
| chr3_4 | exon | 49309422 | 49309863 | 49309422 | ID=Msa0504610-mRNA-1:exon:10604;Parent=Msa0504610-mRNA-1 |
| chr3_4 | exon | 49310370 | 49311240 | 49310370 | ID=Msa0504610-mRNA-1:exon:10603;Parent=Msa0504610-mRNA-1 |
| chr3_4 | CDS | 49310370 | 49311240 | 49310370 | ID=Msa0504610-mRNA-1:cds;Parent=Msa0504610-mRNA-1 |
| chr3_4 | CDS | 49309505 | 49309863 | 49309505 | ID=Msa0504610-mRNA-1:cds;Parent=Msa0504610-mRNA-1 |
| chr3_4 | three_prime_UTR | 49309422 | 49309504 | 49309422 | ID=Msa0504610-mRNA-1:three_prime_utr;Parent=Msa0504610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
