AlfalfaGEDB | Msa0413110

M. sativa cultivar zhongmu-4 / Msa0413110

KEGG: -
GO: GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
PFAM: PF16135.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413110	XP_013460282.1	92.850	1007	64	1	1	1007	125	1123	0.0	1909

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413110	sp\|F4IXE7\|IDM1_ARATH	35.714	462	279	7	446	893	575	1032	1.74e-86	306

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413110	A0A072UYY7	92.850	1007	64	1	1	1007	125	1123	0.0	1909

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TFs/TRs:

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Gene ID	Type	Classification
Msa0413110	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0413110	Msa1171490	0.996821	1.054818e-232	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413110	MtrunA17_Chr3g0105291	92.850	1007	64	1	1	1007	125	1123	0.0	1909
Msa0413110	MtrunA17_Chr5g0430361	48.611	792	363	13	111	894	312	1067	0.0	707
Msa0413110	MtrunA17_Chr5g0430361	48.125	160	72	4	1	155	113	266	7.86e-35	144
Msa0413110	MtrunA17_Chr5g0407211	41.553	438	219	10	477	890	1	425	6.85e-110	347
Msa0413110	MtrunA17_Chr5g0407251	41.435	432	216	10	477	884	1	419	9.51e-109	344
Msa0413110	MtrunA17_Chr7g0270101	43.095	420	218	10	478	888	383	790	6.16e-107	351
Msa0413110	MtrunA17_Chr3g0134811	37.313	469	217	9	478	884	338	791	7.44e-98	327
Msa0413110	MtrunA17_Chr3g0134821	40.662	423	220	10	478	884	425	832	3.55e-94	318
Msa0413110	MtrunA17_Chr1g0205451	39.855	414	236	8	479	885	606	1013	2.69e-84	299
Msa0413110	MtrunA17_Chr2g0316251	36.765	408	253	5	479	884	762	1166	6.82e-83	293

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413110	AT5G58610.3	35.481	978	507	24	2	925	143	1050	0.0	564
Msa0413110	AT5G58610.7	35.481	978	507	24	2	925	134	1041	0.0	563
Msa0413110	AT5G58610.5	35.481	978	507	24	2	925	134	1041	0.0	563
Msa0413110	AT5G58610.8	35.974	934	479	21	2	884	143	1008	0.0	558
Msa0413110	AT5G58610.2	35.974	934	479	21	2	884	143	1008	0.0	558
Msa0413110	AT5G58610.6	34.867	978	487	27	2	925	134	1015	1.55e-171	530
Msa0413110	AT5G58610.1	34.867	978	487	27	2	925	134	1015	1.87e-171	530
Msa0413110	AT5G58610.9	34.580	882	458	21	2	832	134	947	3.02e-158	492
Msa0413110	AT5G58610.10	34.580	882	458	21	2	832	143	956	3.41e-158	492
Msa0413110	AT5G58610.4	45.155	516	270	7	420	925	307	819	1.35e-146	459

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Find 249 sgRNAs with CRISPR-Local

Find 557 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGCTCTCTTGTAAAG+TGG	0.486293	3_2:+57328136	Msa0413110:CDS
AAACGCTTGAGGAATTCAGA+TGG	0.640084	3_2:+57322388	Msa0413110:CDS
AAACTTCCGGAGATGGAATC+AGG	0.401835	3_2:+57321407	Msa0413110:CDS
AAAGAAAGAAGCTATAACTG+TGG	0.593498	3_2:-57328294	None:intergenic
AAAGAAGTTCGCCTCCAAAG+CGG	0.687855	3_2:-57322855	None:intergenic
AAAGTATATATGTGCATAAG+TGG	0.470667	3_2:+57328338	Msa0413110:three_prime_UTR
AAATACCTTGACCATTCATG+AGG	0.588685	3_2:+57322282	Msa0413110:CDS
AAATATTCCCTCTCCAAATT+CGG	0.374447	3_2:+57326704	Msa0413110:CDS
AAATGCGGATTACTCAGGAT+TGG	0.511598	3_2:+57321147	Msa0413110:CDS
AAATTACCAGGAAGCTTGGT+GGG	0.557807	3_2:+57321034	Msa0413110:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAAATGTGATCTTAAGTA+TGG	+	chr3_2:57320996-57321015	Msa0413110:five_prime_UTR	30.0%
CAAAATGAAGTTTCATGCAA+CGG	+	chr3_2:57321509-57321528	Msa0413110:CDS	30.0%
ACACCTCTTCTTCTATTATT+TGG	-	chr3_2:57322154-57322173	None:intergenic	30.0%
ATTCAGAAATCGACTATTTC+TGG	+	chr3_2:57322247-57322266	Msa0413110:CDS	30.0%
CGAATAAATCAAGTGCAAAT+CGG	+	chr3_2:57322359-57322378	Msa0413110:CDS	30.0%
AACCTTTAAATGTTCTGTCT+TGG	+	chr3_2:57322509-57322528	Msa0413110:CDS	30.0%
AACCAAGACAGAACATTTAA+AGG	-	chr3_2:57322514-57322533	None:intergenic	30.0%
GATCTTGCATTATTTGTATC+TGG	-	chr3_2:57322759-57322778	None:intergenic	30.0%
ATGAAAGCGGATATATGTAT+CGG	-	chr3_2:57323168-57323187	None:intergenic	30.0%
TTGATTCAGCAATATGAAAG+CGG	-	chr3_2:57323181-57323200	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	57320835	57328362	57320835	ID=Msa0413110;Name=Msa0413110
chr3_2	mRNA	57320835	57328362	57320835	ID=Msa0413110-mRNA-1;Parent=Msa0413110;Name=Msa0413110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=251\|1\|1\|1\|1\|0.9\|10\|150\|1007
chr3_2	exon	57320835	57322927	57320835	ID=Msa0413110-mRNA-1:exon:11696;Parent=Msa0413110-mRNA-1
chr3_2	exon	57323035	57323155	57323035	ID=Msa0413110-mRNA-1:exon:11697;Parent=Msa0413110-mRNA-1
chr3_2	exon	57323313	57323398	57323313	ID=Msa0413110-mRNA-1:exon:11698;Parent=Msa0413110-mRNA-1
chr3_2	exon	57323591	57323835	57323591	ID=Msa0413110-mRNA-1:exon:11699;Parent=Msa0413110-mRNA-1
chr3_2	exon	57325808	57325894	57325808	ID=Msa0413110-mRNA-1:exon:11700;Parent=Msa0413110-mRNA-1
chr3_2	exon	57326019	57326118	57326019	ID=Msa0413110-mRNA-1:exon:11701;Parent=Msa0413110-mRNA-1
chr3_2	exon	57326531	57326738	57326531	ID=Msa0413110-mRNA-1:exon:11702;Parent=Msa0413110-mRNA-1
chr3_2	exon	57326823	57326946	57326823	ID=Msa0413110-mRNA-1:exon:11703;Parent=Msa0413110-mRNA-1
chr3_2	exon	57327742	57327799	57327742	ID=Msa0413110-mRNA-1:exon:11704;Parent=Msa0413110-mRNA-1
chr3_2	exon	57328060	57328362	57328060	ID=Msa0413110-mRNA-1:exon:11705;Parent=Msa0413110-mRNA-1
chr3_2	five_prime_UTR	57320835	57321085	57320835	ID=Msa0413110-mRNA-1:five_prime_utr;Parent=Msa0413110-mRNA-1
chr3_2	CDS	57321086	57322927	57321086	ID=Msa0413110-mRNA-1:cds;Parent=Msa0413110-mRNA-1
chr3_2	CDS	57323035	57323155	57323035	ID=Msa0413110-mRNA-1:cds;Parent=Msa0413110-mRNA-1
chr3_2	CDS	57323313	57323398	57323313	ID=Msa0413110-mRNA-1:cds;Parent=Msa0413110-mRNA-1
chr3_2	CDS	57323591	57323835	57323591	ID=Msa0413110-mRNA-1:cds;Parent=Msa0413110-mRNA-1
chr3_2	CDS	57325808	57325894	57325808	ID=Msa0413110-mRNA-1:cds;Parent=Msa0413110-mRNA-1
chr3_2	CDS	57326019	57326118	57326019	ID=Msa0413110-mRNA-1:cds;Parent=Msa0413110-mRNA-1
chr3_2	CDS	57326531	57326738	57326531	ID=Msa0413110-mRNA-1:cds;Parent=Msa0413110-mRNA-1
chr3_2	CDS	57326823	57326946	57326823	ID=Msa0413110-mRNA-1:cds;Parent=Msa0413110-mRNA-1
chr3_2	CDS	57327742	57327799	57327742	ID=Msa0413110-mRNA-1:cds;Parent=Msa0413110-mRNA-1
chr3_2	CDS	57328060	57328212	57328060	ID=Msa0413110-mRNA-1:cds;Parent=Msa0413110-mRNA-1
chr3_2	three_prime_UTR	57328213	57328362	57328213	ID=Msa0413110-mRNA-1:three_prime_utr;Parent=Msa0413110-mRNA-1

Gene Sequence

>Msa0413110

ATGGAGGAGAGGACTGTGTTTTTCCCTGATTTGGGTGATGAAATGAAGGTCGGAATTCAGGAAATGCGGATTACTCAGGATTGGGATGAAGTTACGGAGAGATGGGAGCGACGAGGGAAATGGTTGCTTTTTGAATTGATTGAGGAGTTGTATCTTCCGGTATCGGTAAGGCAAATTTGGTATGATGTGCGACAAAAAAAGGAATTTGCCGTGATTGGTGAATGGACATTGAATGAGAAGAAGGATTTGTGGAGACACTTGATAATGGAGGTAGTTGGTGACTACTTGGCTGTTACAGTAAAGGAAGTTTTCTCGGCCTTGAAACTTCCGGAGATGGAATCAGGTGAATTATTATCTGAAAAGGAAGAGTTTGAGCAGAAAGAACTTGTTGTTCCTCCAGCTGAAAAGGACTTGCCTAAGTTTCAAAATGAAGTTTCATGCAACGGTGCTGGTGAAGCGGTTGCCATCAATTCTGAGAAAAATGAACACAGATTGTCAACTGATTTAAAGTCAAATTGTTCGTGGGAACGTGTAATATTTTCTGAAACTGAATACTGTCCCGATGCTGTTAAGCAATATGTGCTTGCTTCTGACTCCAAGGCAACTATGGCATCTTTGAAGGAAAAAGTATGGAAACATCTTGCATATCTTGGATGGGAAATTGACATTGACCTGGGTAGTAAAAAATACAGGTACAAGCCACCCAATGGAATCCATTGCAATAATAAAGTTTACTACTCACTTATTCTACTTTGTAAAGCTGAATCCATGATGAACTCTTCTCCGTCCGAAAATGGTCTTGATATAAGGCATCCTGCCGGTGACTGTCATGTTCCAAATGTGCCTCTTAGTCCATCTGAAAAGATTCAGAACCGAGTATCTCCTCTAGTTGTGAGGCTTCCATCTGTTGCAGTGGCAGATGAACAAGCTTATTGTCCTCAAGCCATTGTGGAATACCACAAACATGCACTCAAGAAGACCTGCAATCGGGCATATAAAAGGAAACTTATTTCAAAAGTACGAAATCATCTGAAAGCAGAAGGATGGATTTTAATTGATCCACCTCCAAATAATAGAAGAAGAGGTGTTTTATACATTTCTCCACTGAAACAGAAATTCTTCTCATTGAATACAGTATGCAGTTTCTTACTTGAAGAAAGTATTCAGAAATCGACTATTTCTGGCATGCAACCTTTAAATACCTTGACCATTCATGAGGAAAATGTTGATCAGGTATTGAGTGATGATTTATCAAGTAGAGACAGTGTTGCTGCGAATAAATCAAGTGCAAATCGGAAGCGAAAACGCTTGAGGAATTCAGATGGCAGCCTGCCAAAGCGCCGAAGCGATGAATCAACTCTAAGGGTACTGAGATCAAATGAAAGGGTGCCAAAGGCGTCTTCCTCTTGCCTTTCACATCATAAACCTTTAAATGTTCTGTCTTGGTTGATAGACAGCAACATGTTGTTACCAAGGTCTAAGGTTTTTTGTCGAGCAAAACGTGGGCACCGTACTGTGCTTTCTGGGCGAATAACTCATGAAGGCATCAAGTGTAACTGTTGTTCAAGAATATACAGTCTTGTTTCCTTCGAATTTCATGCTACTGGCAGTAATACCATCAGACCAAGTGCCAATATCTTTCTGGCCGATGGTAGATCGCTCTTATCTTGCCAGATACAAATAATGCAAGATCACAAGTCTAAGGAGGCTATGATAAAACCACACAGTCATTTGCGTCAAGGTGAAAACGACTACATTTGTTCCGTTTGCCGCTTTGGAGGCGAACTTCTTTTGTGTGATCAATGTCCGTCTTCATATCATAAGACGTGTCTTGGTCTGGAGGATCTCCCTGATGGTGAATGGTTTTGTCCATCGTGTCGATGCGGGATTTGTAGCCAAAGCAAATTCAACGGGGGTGGTGAGGATGAGCATTTCCTTACATGCATTCAGTGTGAACATAAATATCATGTTGCGTGCCTGAAAAGTAGAGATACCAGTAAATCCGGAAGTTATGTGGAAAGCCGGTTCTGCGGAAAAGACTGTGAAAAGTTATATACAGCCCTTCAAAGTCTGTTAGGACAGCCAGTTTCAGTGGGTGCGGACAATCTAACATGGACATTAGTGAAGTGTGCCGACTCTGAGAGTTGTGAACTTGATAATAGTAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTCTTTCATTGATGCATGAATGTTTCGAGCCCCTAAAGGAATCCTCTTCTTGCAGAGATCTGATGGAAAATGTTTTATTCAGCCGATGGTCAGAACTTAATCGAATGAATTTCCAGGGTTTCTATTCCGTACTTCTGGAGAGAAATGAAGATCTGGTCAGTGTAGCAACTATTAGGGTCCTTGGAGATAAGGTAGCTGAAGTACCTCTTGTTGGTACCAGATTTCAGTATCGTCGTCATGGAATGTGTCGCATATTAATGGATGAATTGGAGAAGAAGCTCACGCAATTAGGACTGGAACGTCTCGTTTTACCTGCTGTTCCCACTGTGGTAGATACATGGACCGGCGCTTTTGGATTTTCAAAGATGCCAAACTTTGAAAGATCACAATTTCTAAACTATACTTTCCTAGATTTTCCGGGTACCATCATGTGCCAGAAGTTTTTAGCAAATATTCCCTCTCCAAATTCGGTTTTGCCAACTGAGTTCCAACGAAAACAAGATGCTATCTCCGGAAGCAGTAGTGCTAGTAATAAGTCTCCAGTTTCTGAAGTTTACCAAGCAGAAGAGATAGACAAAAGAGAATCGTTGGATCAACAAATGATGGATACTTCTGAAGGCGATAATGATAATCTTGGCAGTGCTGTTATCGACTGTGTCACCATGGCGGAGCAACCAATTCCTGTGGACCAACAACATTGCCAGAATGAAACCACTCAAAAATGCCAGAATGAAACCACTCAAAAGTGCTCTCTTGTAAAGTGGAGTGGACTGGTGTACTCTAGACGAAGGAAGGCGAAAGGGGAACATGAAGCGTAG

Protein sequence

>Msa0413110

MEERTVFFPDLGDEMKVGIQEMRITQDWDEVTERWERRGKWLLFELIEELYLPVSVRQIWYDVRQKKEFAVIGEWTLNEKKDLWRHLIMEVVGDYLAVTVKEVFSALKLPEMESGELLSEKEEFEQKELVVPPAEKDLPKFQNEVSCNGAGEAVAINSEKNEHRLSTDLKSNCSWERVIFSETEYCPDAVKQYVLASDSKATMASLKEKVWKHLAYLGWEIDIDLGSKKYRYKPPNGIHCNNKVYYSLILLCKAESMMNSSPSENGLDIRHPAGDCHVPNVPLSPSEKIQNRVSPLVVRLPSVAVADEQAYCPQAIVEYHKHALKKTCNRAYKRKLISKVRNHLKAEGWILIDPPPNNRRRGVLYISPLKQKFFSLNTVCSFLLEESIQKSTISGMQPLNTLTIHEENVDQVLSDDLSSRDSVAANKSSANRKRKRLRNSDGSLPKRRSDESTLRVLRSNERVPKASSSCLSHHKPLNVLSWLIDSNMLLPRSKVFCRAKRGHRTVLSGRITHEGIKCNCCSRIYSLVSFEFHATGSNTIRPSANIFLADGRSLLSCQIQIMQDHKSKEAMIKPHSHLRQGENDYICSVCRFGGELLLCDQCPSSYHKTCLGLEDLPDGEWFCPSCRCGICSQSKFNGGGEDEHFLTCIQCEHKYHVACLKSRDTSKSGSYVESRFCGKDCEKLYTALQSLLGQPVSVGADNLTWTLVKCADSESCELDNSKSGLLAESYSKLNVALSLMHECFEPLKESSSCRDLMENVLFSRWSELNRMNFQGFYSVLLERNEDLVSVATIRVLGDKVAEVPLVGTRFQYRRHGMCRILMDELEKKLTQLGLERLVLPAVPTVVDTWTGAFGFSKMPNFERSQFLNYTFLDFPGTIMCQKFLANIPSPNSVLPTEFQRKQDAISGSSSASNKSPVSEVYQAEEIDKRESLDQQMMDTSEGDNDNLGSAVIDCVTMAEQPIPVDQQHCQNETTQKCQNETTQKCSLVKWSGLVYSRRRKAKGEHEA*