AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1171490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1171490 MtrunA17_Chr3g0105291 92.850 1007 64 1 1 1007 125 1123 0.0 1909
Msa1171490 MtrunA17_Chr5g0430361 48.611 792 363 13 111 894 312 1067 0.0 707
Msa1171490 MtrunA17_Chr5g0430361 48.125 160 72 4 1 155 113 266 7.86e-35 144
Msa1171490 MtrunA17_Chr5g0407211 41.553 438 219 10 477 890 1 425 6.85e-110 347
Msa1171490 MtrunA17_Chr5g0407251 41.435 432 216 10 477 884 1 419 9.51e-109 344
Msa1171490 MtrunA17_Chr7g0270101 43.095 420 218 10 478 888 383 790 6.16e-107 351
Msa1171490 MtrunA17_Chr3g0134811 37.313 469 217 9 478 884 338 791 7.44e-98 327
Msa1171490 MtrunA17_Chr3g0134821 40.662 423 220 10 478 884 425 832 3.55e-94 318
Msa1171490 MtrunA17_Chr1g0205451 39.855 414 236 8 479 885 606 1013 2.69e-84 299
Msa1171490 MtrunA17_Chr2g0316251 36.765 408 253 5 479 884 762 1166 6.82e-83 293
Msa1171490 MtrunA17_Chr1g0185491 35.032 471 282 10 425 885 765 1221 7.70e-80 285
Msa1171490 MtrunA17_Chr3g0134851 34.579 428 183 9 481 884 110 464 4.53e-58 207
Msa1171490 MtrunA17_Chr7g0259981 32.484 314 186 6 583 894 13 302 9.97e-56 196
Msa1171490 MtrunA17_Chr4g0012501 75.862 116 24 1 1 112 136 251 8.61e-53 185
Msa1171490 MtrunA17_Chr7g0265211 27.290 513 283 12 444 884 453 947 2.06e-43 171
Msa1171490 MtrunA17_Chr1g0182481 27.896 423 241 10 490 867 472 875 1.19e-42 168
Msa1171490 MtrunA17_Chr1g0179841 26.932 453 257 9 490 882 362 800 9.43e-40 159
Msa1171490 MtrunA17_Chr4g0055731 23.864 528 316 18 374 884 11 469 5.72e-32 131
Msa1171490 MtrunA17_Chr4g0028111 23.394 436 238 10 511 860 137 562 4.60e-28 120
Msa1171490 MtrunA17_Chr4g0027811 24.236 458 226 12 483 885 188 579 1.49e-27 119
Msa1171490 MtrunA17_Chr4g0025251 30.268 261 155 9 645 885 449 702 7.40e-24 108
Msa1171490 MtrunA17_Chr2g0320451 32.275 189 114 4 703 889 852 1028 3.42e-22 103
Msa1171490 MtrunA17_Chr2g0320451 25.316 237 118 3 504 692 489 714 1.64e-16 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1171490 AT5G58610.3 35.481 978 507 24 2 925 143 1050 0.0 564
Msa1171490 AT5G58610.7 35.481 978 507 24 2 925 134 1041 0.0 563
Msa1171490 AT5G58610.5 35.481 978 507 24 2 925 134 1041 0.0 563
Msa1171490 AT5G58610.8 35.974 934 479 21 2 884 143 1008 0.0 558
Msa1171490 AT5G58610.2 35.974 934 479 21 2 884 143 1008 0.0 558
Msa1171490 AT5G58610.6 34.867 978 487 27 2 925 134 1015 1.55e-171 530
Msa1171490 AT5G58610.1 34.867 978 487 27 2 925 134 1015 1.87e-171 530
Msa1171490 AT5G58610.9 34.580 882 458 21 2 832 134 947 3.02e-158 492
Msa1171490 AT5G58610.10 34.580 882 458 21 2 832 143 956 3.41e-158 492
Msa1171490 AT5G58610.4 45.155 516 270 7 420 925 307 819 1.35e-146 459
Msa1171490 AT5G58610.11 33.412 844 443 21 2 794 134 909 6.52e-139 440
Msa1171490 AT1G05380.3 38.565 446 261 8 453 890 494 934 3.26e-91 316
Msa1171490 AT1G05380.1 38.565 446 261 8 453 890 494 934 3.26e-91 316
Msa1171490 AT1G05380.2 38.565 446 261 8 453 890 494 934 3.26e-91 316
Msa1171490 AT3G14980.3 35.714 462 279 7 446 893 575 1032 1.01e-87 304
Msa1171490 AT3G14980.5 35.714 462 279 7 446 893 530 987 1.22e-87 306
Msa1171490 AT3G14980.6 35.714 462 279 7 446 893 575 1032 1.77e-87 306
Msa1171490 AT3G14980.1 35.714 462 279 7 446 893 575 1032 1.77e-87 306
Msa1171490 AT3G14980.2 35.714 462 279 7 446 893 575 1032 1.77e-87 306
Msa1171490 AT5G36740.5 30.878 638 380 18 294 894 353 966 2.80e-87 305
Msa1171490 AT5G36740.1 30.878 638 380 18 294 894 353 966 2.80e-87 305
Msa1171490 AT5G36740.4 30.093 648 382 19 294 894 200 823 2.23e-83 291
Msa1171490 AT4G14920.3 36.000 450 278 7 452 897 553 996 4.70e-77 275
Msa1171490 AT4G14920.2 36.384 437 268 7 452 884 553 983 9.33e-77 274
Msa1171490 AT4G14920.1 36.384 437 268 7 452 884 553 983 9.33e-77 274
Msa1171490 AT5G36670.4 28.593 654 388 20 294 894 353 980 3.11e-74 267
Msa1171490 AT5G36670.5 28.593 654 388 20 294 894 353 980 3.11e-74 267
Msa1171490 AT5G36670.3 28.012 664 389 21 294 894 200 837 2.94e-70 254
Msa1171490 AT5G36670.2 30.018 563 340 17 294 826 353 891 4.63e-70 251
Msa1171490 AT5G36740.2 30.018 563 340 17 294 826 353 891 4.63e-70 251
Msa1171490 AT5G36740.3 30.018 563 340 17 294 826 353 891 4.63e-70 251
Msa1171490 AT5G36670.1 28.012 664 389 21 294 894 353 990 5.14e-70 254
Msa1171490 AT5G63900.1 42.997 307 143 11 586 884 258 540 1.24e-66 234
Msa1171490 AT3G14980.4 33.699 365 224 7 446 796 575 935 3.09e-59 220
Msa1171490 AT2G27980.1 29.204 452 240 10 515 902 637 1072 7.29e-47 183
Msa1171490 AT2G37520.1 28.704 432 234 10 506 882 401 813 4.22e-44 173
Msa1171490 AT3G53680.1 27.689 437 255 8 506 894 418 841 1.00e-42 169
Msa1171490 AT3G53680.2 27.689 437 255 8 506 894 420 843 1.20e-42 168
Msa1171490 AT2G36720.1 26.754 456 254 10 490 882 533 971 1.33e-37 153
Msa1171490 AT2G36720.2 26.754 456 254 10 490 882 533 971 1.33e-37 153

Find 249 sgRNAs with CRISPR-Local

Find 557 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACCTCTTCTTCTATTATT+TGG 0.106047 8_1:-1110355 None:intergenic
GGGCACCGTACTGTGCTTTC+TGG 0.111625 8_1:+1110793 Msa1171490:CDS
ATTCAGAAATCGACTATTTC+TGG 0.151862 8_1:+1110451 Msa1171490:CDS
AACCAAGACAGAACATTTAA+AGG 0.177176 8_1:-1110715 None:intergenic
CCAGTTGGCAAAACCGAATT+TGG 0.185947 8_1:-1114922 None:intergenic
CACATAACTTCCGGATTTAC+TGG 0.222960 8_1:-1111547 None:intergenic
CGGTATCGGTAAGGCAAATT+TGG 0.235298 8_1:+1109447 Msa1171490:CDS
GAAGCGTAGGATTTATAATT+AGG 0.235350 8_1:+1116409 Msa1171490:exon
ACCAAGTGCCAATATCTTTC+TGG 0.242341 8_1:+1110912 Msa1171490:CDS
GAGAATATTCTGAATGATAA+TGG 0.245574 8_1:+1109068 Msa1171490:five_prime_UTR
TAATAGTAAAAGTGGATTAT+TGG 0.263495 8_1:+1111902 Msa1171490:CDS
CATCAGAAGCTCACGCAATT+AGG 0.274638 8_1:+1114730 Msa1171490:intron
AATTGTGATCTTTCAAAGTT+TGG 0.278158 8_1:-1114829 None:intergenic
GGGTTTCTATTCCGTACTTC+TGG 0.279523 8_1:+1114040 Msa1171490:CDS
TGAATGGTCAAGGTATTTAA+AGG 0.280119 8_1:-1110481 None:intergenic
CATCGCTTCGGCGCTTTGGC+AGG 0.290256 8_1:-1110618 None:intergenic
CCGAAAATGGTCTTGATATA+AGG 0.291887 8_1:+1110077 Msa1171490:CDS
ATTTGTTCCGTTTGCCGCTT+TGG 0.297414 8_1:+1111045 Msa1171490:CDS
GATACATGGACCGGCGCTTT+TGG 0.305649 8_1:+1114793 Msa1171490:CDS
GCAAGAAGAGGATTCCTTTA+GGG 0.310158 8_1:-1111982 None:intergenic
AACTCTTCTCCGTCCGAAAA+TGG 0.313482 8_1:+1110064 Msa1171490:CDS
TTCATTTCATCACCCAAATC+AGG 0.315241 8_1:-1109314 None:intergenic
CCTGCAATCGGGCATATAAA+AGG 0.318750 8_1:+1110269 Msa1171490:CDS
GATCTTGCATTATTTGTATC+TGG 0.322209 8_1:-1110960 None:intergenic
AGTGAGTGTTTCAAGTGTTT+TGG 0.328028 8_1:+1109112 Msa1171490:five_prime_UTR
TTCTGACTCCAAGGCAACTA+TGG 0.328818 8_1:+1109877 Msa1171490:CDS
TGAAATGAAGGTCGGAATTC+AGG 0.335691 8_1:+1109328 Msa1171490:CDS
GAGAAATGTGATCTTAAGTA+TGG 0.340078 8_1:+1109200 Msa1171490:five_prime_UTR
TGCAAGAAGAGGATTCCTTT+AGG 0.345444 8_1:-1111983 None:intergenic
GCTTGGTAAACTTCAGAAAC+TGG 0.348392 8_1:-1115084 None:intergenic
TTGTCCGCACCCACTGAAAC+TGG 0.359349 8_1:-1111828 None:intergenic
GGAGTAAACATGGGAGGATT+AGG 0.360304 8_1:+1109153 Msa1171490:five_prime_UTR
CACCTTCCCACCAAGCTTCC+TGG 0.361570 8_1:-1109244 None:intergenic
TTTCTCGGCCTTGAAACTTC+CGG 0.373286 8_1:+1109598 Msa1171490:CDS
CATGTTGTTACCAAGGTCTA+AGG 0.373440 8_1:+1110750 Msa1171490:CDS
AAATATTCCCTCTCCAAATT+CGG 0.374447 8_1:+1114909 Msa1171490:CDS
GAAGCGATGAATCAACTCTA+AGG 0.378506 8_1:+1110632 Msa1171490:CDS
TGGTCAGTGTAGCAACTATT+AGG 0.379578 8_1:+1114078 Msa1171490:CDS
GATGGACTAAGAGGCACATT+TGG 0.383730 8_1:-1110124 None:intergenic
TGGAAACATCTTGCATATCT+TGG 0.388953 8_1:+1109920 Msa1171490:CDS
TGTTGTTGGTCCACAGGAAT+TGG 0.390924 8_1:-1116274 None:intergenic
AATGCAAGATCACAAGTCTA+AGG 0.396731 8_1:+1110972 Msa1171490:CDS
GATTAGGCCAGTGCCTCCTT+TGG 0.397024 8_1:+1109169 Msa1171490:five_prime_UTR
GAACTTGATAATAGTAAAAG+TGG 0.398807 8_1:+1111894 Msa1171490:CDS
ACCATCGGCCAGAAAGATAT+TGG 0.399541 8_1:-1110920 None:intergenic
AAACTTCCGGAGATGGAATC+AGG 0.401835 8_1:+1109611 Msa1171490:CDS
TCGCATATTAATGGATGAAT+TGG 0.403985 8_1:+1114296 Msa1171490:CDS
TGGAATGTGTCGCATATTAA+TGG 0.405995 8_1:+1114287 Msa1171490:CDS
ATTACTAGCACTACTGCTTC+CGG 0.409786 8_1:-1115055 None:intergenic
GGCACCGTACTGTGCTTTCT+GGG 0.413489 8_1:+1110794 Msa1171490:CDS
TTTGTCCATCGTGTCGATGC+GGG 0.414181 8_1:+1111261 Msa1171490:CDS
GTAGCCAAAGCAAATTCAAC+GGG 0.414503 8_1:+1111288 Msa1171490:CDS
TGTTGTTCCTCCAGCTGAAA+AGG 0.415498 8_1:+1109676 Msa1171490:CDS
ACTTAATCGAATGAATTTCC+AGG 0.417064 8_1:+1114019 Msa1171490:CDS
TTTCATTCTGGCAATGTTGT+TGG 0.419236 8_1:-1116288 None:intergenic
ACAGCCCTTCAAAGTCTGTT+AGG 0.423835 8_1:+1111801 Msa1171490:CDS
TGATGGTACCCGGAAAATCT+AGG 0.425301 8_1:-1114867 None:intergenic
TCATAAGACGTGTCTTGGTC+TGG 0.426619 8_1:+1111107 Msa1171490:CDS
ATTATTGCAATGGATTCCAT+TGG 0.427186 8_1:-1109993 None:intergenic
CTTCTTCTATTATTTGGAGG+TGG 0.430595 8_1:-1110349 None:intergenic
AACCTTTAAATGTTCTGTCT+TGG 0.434230 8_1:+1110713 Msa1171490:CDS
TTCCATCTCCGGAAGTTTCA+AGG 0.435157 8_1:-1109606 None:intergenic
CCGGCTTTCCACATAACTTC+CGG 0.435342 8_1:-1111556 None:intergenic
TCCTTCGAATTTCATGCTAC+TGG 0.436416 8_1:+1110874 Msa1171490:CDS
CCTCTTCTTCTATTATTTGG+AGG 0.441510 8_1:-1110352 None:intergenic
TCTTAGGGTCCTTGGAGATA+AGG 0.443751 8_1:+1114218 Msa1171490:intron
GGCAACTATGGCATCTTTGA+AGG 0.445667 8_1:+1109889 Msa1171490:CDS
AGTAGAGATACCAGTAAATC+CGG 0.447861 8_1:+1111537 Msa1171490:CDS
CTCTTCTTGCAGAGATCTGA+TGG 0.450854 8_1:+1111995 Msa1171490:CDS
CAAATTTGCCTTACCGATAC+CGG 0.451165 8_1:-1109446 None:intergenic
TTTGTGGAGACACTTGATAA+TGG 0.452655 8_1:+1109535 Msa1171490:CDS
GTTCACACTGAATGCATGTA+AGG 0.456612 8_1:-1111331 None:intergenic
TGAATGAGAAGAAGGATTTG+TGG 0.456943 8_1:+1109519 Msa1171490:CDS
TCTTCTTGAGTGCATGTTTG+TGG 0.458079 8_1:-1110246 None:intergenic
GGACAAAACCATTCACCATC+AGG 0.458765 8_1:-1111245 None:intergenic
GGGATGAAGTTACGGAGAGA+TGG 0.459836 8_1:+1109372 Msa1171490:CDS
GATGGGAGCGACGAGGGAAA+TGG 0.459932 8_1:+1109390 Msa1171490:CDS
TCATGAGGAAAATGTTGATC+AGG 0.461489 8_1:+1110501 Msa1171490:CDS
GATTGAGGAGTTGTATCTTC+CGG 0.462600 8_1:+1109427 Msa1171490:CDS
CACTCAAGAAGACCTGCAAT+CGG 0.463785 8_1:+1110257 Msa1171490:CDS
CGAATAAATCAAGTGCAAAT+CGG 0.466377 8_1:+1110563 Msa1171490:CDS
TTAGAGTTGATTCATCGCTT+CGG 0.468082 8_1:-1110630 None:intergenic
GATTCATCGCTTCGGCGCTT+TGG 0.468963 8_1:-1110622 None:intergenic
CAAAGATGCCATAGTTGCCT+TGG 0.470190 8_1:-1109885 None:intergenic
AGGTGAATTATTATCTGAAA+AGG 0.470293 8_1:+1109631 Msa1171490:CDS
AAAGTATATATGTGCATAAG+TGG 0.470667 8_1:+1116543 Msa1171490:three_prime_UTR
GGCCTTGAAACTTCCGGAGA+TGG 0.471082 8_1:+1109604 Msa1171490:CDS
AGGCAAGAGGAAGACGCCTT+TGG 0.471117 8_1:-1110679 None:intergenic
GAAGGCGATAATGATAATCT+TGG 0.474333 8_1:+1115954 Msa1171490:CDS
TCAGGATTGGGATGAAGTTA+CGG 0.474444 8_1:+1109364 Msa1171490:CDS
AGAATATTCTGAATGATAAT+GGG 0.475569 8_1:+1109069 Msa1171490:five_prime_UTR
ATCGTTGGATCAACAAATGA+TGG 0.477086 8_1:+1115128 Msa1171490:CDS
TGGCAATGTTGTTGGTCCAC+AGG 0.477715 8_1:-1116280 None:intergenic
TCTGGAGAGAAATGAAGATC+TGG 0.483681 8_1:+1114058 Msa1171490:CDS
GATAGACAAAAGAGAATCGT+TGG 0.484937 8_1:+1115113 Msa1171490:CDS
CAAAATGAAGTTTCATGCAA+CGG 0.485051 8_1:+1109713 Msa1171490:CDS
AAAAGTGCTCTCTTGTAAAG+TGG 0.486293 8_1:+1116341 Msa1171490:CDS
ACATATTGCTTAACAGCATC+GGG 0.489875 8_1:-1109848 None:intergenic
AATTCACCTGATTCCATCTC+CGG 0.489949 8_1:-1109617 None:intergenic
ATGACGACGATACTGAAATC+TGG 0.490750 8_1:-1114265 None:intergenic
AATGCGGATTACTCAGGATT+GGG 0.491002 8_1:+1109352 Msa1171490:CDS
ATTTAAAGTCAAATTGTTCG+TGG 0.491332 8_1:+1109792 Msa1171490:CDS
AACTCAACCAAAGGAGGCAC+TGG 0.491829 8_1:-1109176 None:intergenic
ATTCTGAATGATAATGGGTT+GGG 0.491960 8_1:+1109074 Msa1171490:five_prime_UTR
TTATTGCAATGGATTCCATT+GGG 0.492268 8_1:-1109992 None:intergenic
AGTAAACTTTATTATTGCAA+TGG 0.492400 8_1:-1110003 None:intergenic
AACATCTTGCATATCTTGGA+TGG 0.495598 8_1:+1109924 Msa1171490:CDS
CAGTAAATCCGGAAGTTATG+TGG 0.497239 8_1:+1111548 Msa1171490:CDS
TTCGCCTCCAAAGCGGCAAA+CGG 0.498884 8_1:-1111052 None:intergenic
TTCATTTCTCTCCAGAAGTA+CGG 0.498951 8_1:-1114051 None:intergenic
GGAGTTGTATCTTCCGGTAT+CGG 0.502507 8_1:+1109433 Msa1171490:CDS
TATTCTGAATGATAATGGGT+TGG 0.503416 8_1:+1109073 Msa1171490:five_prime_UTR
CCTCCAAATAATAGAAGAAG+AGG 0.505734 8_1:+1110352 Msa1171490:CDS
GAGAAGAATTTCTGTTTCAG+TGG 0.506628 8_1:-1110391 None:intergenic
GTAGCTGAAGTACCTCTTGT+TGG 0.510042 8_1:+1114240 Msa1171490:CDS
TTAAAGGTTTATGATGTGAA+AGG 0.510336 8_1:-1110699 None:intergenic
AAATGCGGATTACTCAGGAT+TGG 0.511598 8_1:+1109351 Msa1171490:CDS
GATATTGGCACTTGGTCTGA+TGG 0.512828 8_1:-1110905 None:intergenic
GCTGTCCTAACAGACTTTGA+AGG 0.513374 8_1:-1111806 None:intergenic
GCCAATATCTTTCTGGCCGA+TGG 0.514917 8_1:+1110919 Msa1171490:CDS
CATCAGATCTCTGCAAGAAG+AGG 0.515594 8_1:-1111994 None:intergenic
CACATATTGCTTAACAGCAT+CGG 0.516322 8_1:-1109849 None:intergenic
CGAAAACAAGATGCTATCTC+CGG 0.516683 8_1:+1115036 Msa1171490:CDS
GTTAGGACAGCCAGTTTCAG+TGG 0.517338 8_1:+1111818 Msa1171490:CDS
GGAGGTAGTTGGTGACTACT+TGG 0.518838 8_1:+1109556 Msa1171490:CDS
ATGGACATTGAATGAGAAGA+AGG 0.520484 8_1:+1109511 Msa1171490:CDS
GGTACTGAGATCAAATGAAA+GGG 0.522206 8_1:+1110654 Msa1171490:CDS
TACCAGGAAGCTTGGTGGGA+AGG 0.523101 8_1:+1109242 Msa1171490:five_prime_UTR
TGTTCCGTTTGCCGCTTTGG+AGG 0.523366 8_1:+1111048 Msa1171490:CDS
AGGATCTCCCTGATGGTGAA+TGG 0.525582 8_1:+1111237 Msa1171490:intron
TCAGGAAATGCGGATTACTC+AGG 0.525665 8_1:+1109346 Msa1171490:CDS
GGACGGAGAAGAGTTCATCA+TGG 0.529822 8_1:-1110056 None:intergenic
TGAATGTTTCGAGCCCCTAA+AGG 0.530764 8_1:+1111968 Msa1171490:CDS
ATGTAAATTACCAGGAAGCT+TGG 0.532737 8_1:+1109234 Msa1171490:five_prime_UTR
CTTAATCGAATGAATTTCCA+GGG 0.533875 8_1:+1114020 Msa1171490:CDS
GGGTACTGAGATCAAATGAA+AGG 0.534729 8_1:+1110653 Msa1171490:CDS
TTTAAAGTCAAATTGTTCGT+GGG 0.535401 8_1:+1109793 Msa1171490:CDS
GGATGAAGTTACGGAGAGAT+GGG 0.535957 8_1:+1109373 Msa1171490:CDS
CTAGACGAAGGAAGGCGAAA+GGG 0.537831 8_1:+1116380 Msa1171490:CDS
ATCATCTGAAAGCAGAAGGA+TGG 0.539714 8_1:+1110314 Msa1171490:CDS
CTACTTGGCTGTTACAGTAA+AGG 0.541628 8_1:+1109571 Msa1171490:CDS
GAATGATAAGTGTGATGGAA+TGG 0.545053 8_1:+1109271 Msa1171490:exon
TCTTGTAAAGTGGAGTGGAC+TGG 0.545279 8_1:+1116351 Msa1171490:CDS
ATCAAATGAAAGGGTGCCAA+AGG 0.545984 8_1:+1110663 Msa1171490:CDS
CCGGAAGTTATGTGGAAAGC+CGG 0.546646 8_1:+1111556 Msa1171490:CDS
TCTACCACAGTGGGAACAGC+AGG 0.548324 8_1:-1114772 None:intergenic
TTCCCACTGTGGTAGATACA+TGG 0.549468 8_1:+1114779 Msa1171490:CDS
AATTTGCCGTGATTGGTGAA+TGG 0.552298 8_1:+1109492 Msa1171490:CDS
CATGTATAGGATCTCCCTGA+TGG 0.557404 8_1:+1111230 Msa1171490:intron
TGCTCTCTTGTAAAGTGGAG+TGG 0.557520 8_1:+1116346 Msa1171490:CDS
AAATTACCAGGAAGCTTGGT+GGG 0.557807 8_1:+1109238 Msa1171490:five_prime_UTR
CAATGTCCATTCACCAATCA+CGG 0.558049 8_1:-1109498 None:intergenic
AGATTTCAGTATCGTCGTCA+TGG 0.558925 8_1:+1114267 Msa1171490:CDS
TTCTGGCACATGATGGTACC+CGG 0.559347 8_1:-1114877 None:intergenic
TCATTTCATCACCCAAATCA+GGG 0.559352 8_1:-1109313 None:intergenic
ATCGGGTCATGGAGTAAACA+TGG 0.561301 8_1:+1109143 Msa1171490:five_prime_UTR
TCATATCATAAGACGTGTCT+TGG 0.562434 8_1:+1111102 Msa1171490:CDS
ATCGGAAGCGAAAACGCTTG+AGG 0.563012 8_1:+1110581 Msa1171490:CDS
GAAGTTTCATGCAACGGTGC+TGG 0.563913 8_1:+1109719 Msa1171490:CDS
ACTCAAGAAGACCTGCAATC+GGG 0.566161 8_1:+1110258 Msa1171490:CDS
CAAGAAGAGGATTCCTTTAG+GGG 0.566868 8_1:-1111981 None:intergenic
CGGAGAGATGGGAGCGACGA+GGG 0.568858 8_1:+1109384 Msa1171490:CDS
CGAAATCATCTGAAAGCAGA+AGG 0.569282 8_1:+1110310 Msa1171490:CDS
CTGCGGAAAAGACTGTGAAA+AGG 0.570141 8_1:+1111581 Msa1171490:CDS
CTGTCCTAACAGACTTTGAA+GGG 0.570641 8_1:-1111805 None:intergenic
TGGTATTCCACAATGGCTTG+AGG 0.570911 8_1:-1110226 None:intergenic
TCATCTGCCACTGCAACAGA+TGG 0.573346 8_1:-1110190 None:intergenic
TGTATCTTCCGGTATCGGTA+AGG 0.573927 8_1:+1109438 Msa1171490:CDS
TTAGGACAGCCAGTTTCAGT+GGG 0.574149 8_1:+1111819 Msa1171490:CDS
ACATCTTGCATATCTTGGAT+GGG 0.574776 8_1:+1109925 Msa1171490:CDS
GGAACATGACAGTCACCGGC+AGG 0.574813 8_1:-1110103 None:intergenic
ATTAATGGATGAATTGGAGA+AGG 0.579634 8_1:+1114302 Msa1171490:CDS
GAAGCTCACGCAATTAGGAC+TGG 0.582295 8_1:+1114735 Msa1171490:intron
GCCAGTAGCATGAAATTCGA+AGG 0.587705 8_1:-1110875 None:intergenic
AAATACCTTGACCATTCATG+AGG 0.588685 8_1:+1110486 Msa1171490:CDS
GGCAAAACCGAATTTGGAGA+GGG 0.589581 8_1:-1114916 None:intergenic
TTTGTTGAAGGAGAATGAAG+TGG 0.590519 8_1:+1116454 Msa1171490:three_prime_UTR
AAAGAAAGAAGCTATAACTG+TGG 0.593498 8_1:-1116499 None:intergenic
ACAGCCAGTTTCAGTGGGTG+CGG 0.594757 8_1:+1111824 Msa1171490:CDS
ATTTGGAACATGACAGTCAC+CGG 0.595709 8_1:-1110107 None:intergenic
TAAATTACCAGGAAGCTTGG+TGG 0.595722 8_1:+1109237 Msa1171490:five_prime_UTR
GCCAGAAAGATATTGGCACT+TGG 0.596693 8_1:-1110913 None:intergenic
TACAGGTACAAGCCACCCAA+TGG 0.597089 8_1:+1109977 Msa1171490:CDS
TCTGGGCGAATAACTCATGA+AGG 0.597089 8_1:+1110811 Msa1171490:CDS
TGTAGCCAAAGCAAATTCAA+CGG 0.597213 8_1:+1111287 Msa1171490:CDS
CTTTGAAAATCCAAAAGCGC+CGG 0.597314 8_1:-1114803 None:intergenic
TGTGCTTGCTTCTGACTCCA+AGG 0.601206 8_1:+1109868 Msa1171490:CDS
GATGGAAGCCTCACAACTAG+AGG 0.605377 8_1:-1110172 None:intergenic
TGGATGGTGATATCGGGTCA+TGG 0.606117 8_1:+1109132 Msa1171490:five_prime_UTR
TGATAAGTGTGATGGAATGG+AGG 0.608979 8_1:+1109274 Msa1171490:exon
CACTTGATAATGGAGGTAGT+TGG 0.609618 8_1:+1109545 Msa1171490:CDS
ATGGGAAATTGACATTGACC+TGG 0.610133 8_1:+1109943 Msa1171490:CDS
GGTGTACTCTAGACGAAGGA+AGG 0.610377 8_1:+1116372 Msa1171490:CDS
GTGTGTTGATGTAAATTACC+AGG 0.611042 8_1:+1109226 Msa1171490:five_prime_UTR
GTTGTGAATGATAAGTGTGA+TGG 0.611286 8_1:+1109266 Msa1171490:five_prime_UTR
TGATTTGGGTGATGAAATGA+AGG 0.612944 8_1:+1109316 Msa1171490:CDS
TTGCAATGGATTCCATTGGG+TGG 0.613137 8_1:-1109989 None:intergenic
TTCTCAAACTCAACCAAAGG+AGG 0.613689 8_1:-1109182 None:intergenic
TTGGGTGATGAAATGAAGGT+CGG 0.615563 8_1:+1109320 Msa1171490:CDS
TAAGACGTGTCTTGGTCTGG+AGG 0.616442 8_1:+1111110 Msa1171490:CDS
TATGTGGAAAGCCGGTTCTG+CGG 0.616945 8_1:+1111564 Msa1171490:CDS
AGTGTGATGGAATGGAGGAG+AGG 0.617309 8_1:+1109279 Msa1171490:exon
TAGACGAAGGAAGGCGAAAG+GGG 0.617367 8_1:+1116381 Msa1171490:CDS
GAAAGGGGAACATGAAGCGT+AGG 0.617607 8_1:+1116396 Msa1171490:CDS
AAGCGATGAATCAACTCTAA+GGG 0.620220 8_1:+1110633 Msa1171490:CDS
TTTATGATGTGAAAGGCAAG+AGG 0.620240 8_1:-1110692 None:intergenic
CTTGATATAAGGCATCCTGC+CGG 0.620590 8_1:+1110088 Msa1171490:CDS
TTCGCCCAGAAAGCACAGTA+CGG 0.622172 8_1:-1110798 None:intergenic
AGATAAGAGCGATCTACCAT+CGG 0.623826 8_1:-1110935 None:intergenic
ATGTTTGTGGTATTCCACAA+TGG 0.624693 8_1:-1110233 None:intergenic
TCTAGACGAAGGAAGGCGAA+AGG 0.625198 8_1:+1116379 Msa1171490:CDS
GAGGCTTCCATCTGTTGCAG+TGG 0.625585 8_1:+1110183 Msa1171490:CDS
GGCGGAGCAACCAATTCCTG+TGG 0.627539 8_1:+1116264 Msa1171490:intron
AAGTATATATGTGCATAAGT+GGG 0.628769 8_1:+1116544 Msa1171490:three_prime_UTR
TGAAATCTGGTACCAACAAG+AGG 0.629514 8_1:-1114252 None:intergenic
CACATATATACTTTGTACCA+AGG 0.630385 8_1:-1116534 None:intergenic
TGGCAAAACCGAATTTGGAG+AGG 0.630456 8_1:-1114917 None:intergenic
CCACACAGTCATTTGCGTCA+AGG 0.632292 8_1:+1111009 Msa1171490:CDS
ACTGTGGTAGATACATGGAC+CGG 0.633569 8_1:+1114784 Msa1171490:CDS
ATGCAACGGTGCTGGTGAAG+CGG 0.634047 8_1:+1109727 Msa1171490:CDS
AAACGCTTGAGGAATTCAGA+TGG 0.640084 8_1:+1110592 Msa1171490:CDS
GAAGTACGGAATAGAAACCC+TGG 0.641639 8_1:-1114037 None:intergenic
CTTCAGCTACCTTATCTCCA+AGG 0.642106 8_1:-1114227 None:intergenic
AAGTTCACAACTCTCAGAGT+CGG 0.642483 8_1:-1111877 None:intergenic
TTATTGTCCTCAAGCCATTG+TGG 0.643240 8_1:+1110219 Msa1171490:CDS
GTGGAGACACTTGATAATGG+AGG 0.645022 8_1:+1109538 Msa1171490:CDS
CATTTCTCAAACTCAACCAA+AGG 0.645043 8_1:-1109185 None:intergenic
GCAAGATCACAAGTCTAAGG+AGG 0.646340 8_1:+1110975 Msa1171490:CDS
GTCCATGTATCTACCACAGT+GGG 0.654636 8_1:-1114781 None:intergenic
GAGTATCTCCTCTAGTTGTG+AGG 0.656154 8_1:+1110164 Msa1171490:CDS
CAAATCCCGCATCGACACGA+TGG 0.658482 8_1:-1111266 None:intergenic
ACAGCAACATGTTGTTACCA+AGG 0.659467 8_1:+1110743 Msa1171490:CDS
CACGTCTTATGATATGAAGA+CGG 0.660424 8_1:-1111096 None:intergenic
GACAAAACCATTCACCATCA+GGG 0.668378 8_1:-1111244 None:intergenic
ACGGAGAGATGGGAGCGACG+AGG 0.671386 8_1:+1109383 Msa1171490:CDS
AGGTCGGAATTCAGGAAATG+CGG 0.672442 8_1:+1109336 Msa1171490:CDS
TCACAACTAGAGGAGATACT+CGG 0.675835 8_1:-1110162 None:intergenic
TTTACCTGCTGTTCCCACTG+TGG 0.676231 8_1:+1114768 Msa1171490:CDS
TCGGGTCATGGAGTAAACAT+GGG 0.677391 8_1:+1109144 Msa1171490:five_prime_UTR
TGGGTGCGGACAATCTAACA+TGG 0.678752 8_1:+1111838 Msa1171490:CDS
AAAGAAGTTCGCCTCCAAAG+CGG 0.687855 8_1:-1111059 None:intergenic
CCTTGACGCAAATGACTGTG+TGG 0.688106 8_1:-1111009 None:intergenic
TGTTATCGACTGTGTCACCA+TGG 0.695665 8_1:+1115983 Msa1171490:CDS
GGTCATGGAGTAAACATGGG+AGG 0.696581 8_1:+1109147 Msa1171490:five_prime_UTR
GACTGGTGTACTCTAGACGA+AGG 0.706505 8_1:+1116368 Msa1171490:CDS
TGGGAAATTGACATTGACCT+GGG 0.718631 8_1:+1109944 Msa1171490:CDS
AGCCAAAGCAAATTCAACGG+GGG 0.735187 8_1:+1111290 Msa1171490:CDS
TAGCCAAAGCAAATTCAACG+GGG 0.739394 8_1:+1111289 Msa1171490:CDS
GGTCCATGTATCTACCACAG+TGG 0.749610 8_1:-1114782 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAATAAATAAAATTTT+GGG - chr8_1:1113217-1113236 None:intergenic 0.0%
!!! AAAAAAAATAAATAAAATTT+TGG - chr8_1:1113218-1113237 None:intergenic 0.0%
!! TAAATTGTATAAATGTTTAT+AGG - chr8_1:1113904-1113923 None:intergenic 10.0%
!! AATTAATTAAGATATAAAGT+AGG - chr8_1:1114443-1114462 None:intergenic 10.0%
!!! AATATATTTTGTAATCTATT+TGG + chr8_1:1115429-1115448 Msa1171490:intron 10.0%
!!! TACCTTTTATATTTTGTTAT+AGG + chr8_1:1112088-1112107 Msa1171490:intron 15.0%
!! AAACAAAATAACAGAAAAAA+GGG - chr8_1:1113637-1113656 None:intergenic 15.0%
!!! TGAATTATTGTTGTATTTTT+CGG + chr8_1:1113955-1113974 Msa1171490:intron 15.0%
!!! TTAACTATTTCATTTTTCTT+AGG + chr8_1:1114202-1114221 Msa1171490:intron 15.0%
!!! TAACTATTTCATTTTTCTTA+GGG + chr8_1:1114203-1114222 Msa1171490:intron 15.0%
!! TATGATGATAAAAATGAAAA+GGG - chr8_1:1114382-1114401 None:intergenic 15.0%
!! TTATGATGATAAAAATGAAA+AGG - chr8_1:1114383-1114402 None:intergenic 15.0%
!!! AATATATGTGATTTGTATAT+TGG + chr8_1:1114401-1114420 Msa1171490:intron 15.0%
!! AAGAAATTACATAATATACA+AGG - chr8_1:1116209-1116228 None:intergenic 15.0%
!! TTTATAATTAGGAGTAAAAA+TGG + chr8_1:1116420-1116439 Msa1171490:three_prime_UTR 15.0%
!! AGAATATTCTGAATGATAAT+GGG + chr8_1:1109069-1109088 Msa1171490:five_prime_UTR 20.0%
!! AGTAAACTTTATTATTGCAA+TGG - chr8_1:1110006-1110025 None:intergenic 20.0%
!! GAAAAATGAAATCCAATTAT+CGG - chr8_1:1111211-1111230 None:intergenic 20.0%
!! AATGACATATACAGAAATAT+TGG - chr8_1:1111642-1111661 None:intergenic 20.0%
!!! TAATAGTAAAAGTGGATTAT+TGG + chr8_1:1111902-1111921 Msa1171490:CDS 20.0%
!! AGCCTATAACAAAATATAAA+AGG - chr8_1:1112093-1112112 None:intergenic 20.0%
!! TATATGAATTCATGATCAAA+AGG + chr8_1:1112555-1112574 Msa1171490:intron 20.0%
!! TTATCATGAACATATAACAA+AGG - chr8_1:1113441-1113460 None:intergenic 20.0%
!!! TTTGTTATATGTTCATGATA+AGG + chr8_1:1113440-1113459 Msa1171490:intron 20.0%
!! TTGTTATATGTTCATGATAA+GGG + chr8_1:1113441-1113460 Msa1171490:intron 20.0%
!! GAAACAAAATAACAGAAAAA+AGG - chr8_1:1113638-1113657 None:intergenic 20.0%
!!! AACAGATTTTGTTTGTTTAT+TGG + chr8_1:1113659-1113678 Msa1171490:intron 20.0%
!!! TTTAAAATAATCGACAAATG+TGG + chr8_1:1113868-1113887 Msa1171490:intron 20.0%
!! ACATTTATACAATTTACCAA+TGG + chr8_1:1113908-1113927 Msa1171490:intron 20.0%
!! AATGAAATAGTTAATCAAGA+CGG - chr8_1:1114196-1114215 None:intergenic 20.0%
!! ATGATGATAAAAATGAAAAG+GGG - chr8_1:1114381-1114400 None:intergenic 20.0%
!! TTAAGATATAAAGTAGGAAT+GGG - chr8_1:1114437-1114456 None:intergenic 20.0%
!! ATTAAGATATAAAGTAGGAA+TGG - chr8_1:1114438-1114457 None:intergenic 20.0%
!! TCTTAATTAATTAGTTCCAA+TGG + chr8_1:1114451-1114470 Msa1171490:intron 20.0%
!! TTGTTATCATTATCATATCA+AGG + chr8_1:1114528-1114547 Msa1171490:intron 20.0%
!!! TTTATTTTATCAAACTTTCC+TGG + chr8_1:1114609-1114628 Msa1171490:intron 20.0%
!! TTTAATCCTTACAAAAATGA+TGG + chr8_1:1115172-1115191 Msa1171490:intron 20.0%
!!! TATTAAATATGTTGATGATG+TGG + chr8_1:1115324-1115343 Msa1171490:intron 20.0%
!!! TAAGTTTTTTTCATCTTTAG+TGG + chr8_1:1115846-1115865 Msa1171490:intron 20.0%
!!! TGATAATTTGATTGGTTTAT+AGG + chr8_1:1116243-1116262 Msa1171490:intron 20.0%
! GAGAATATTCTGAATGATAA+TGG + chr8_1:1109068-1109087 Msa1171490:five_prime_UTR 25.0%
! AGGTGAATTATTATCTGAAA+AGG + chr8_1:1109631-1109650 Msa1171490:CDS 25.0%
!!! GAAACTTCATTTTGAAACTT+AGG - chr8_1:1109707-1109726 None:intergenic 25.0%
!!! TTCATTTTTCTCAGAATTGA+TGG - chr8_1:1109756-1109775 None:intergenic 25.0%
!! ATTTAAAGTCAAATTGTTCG+TGG + chr8_1:1109792-1109811 Msa1171490:CDS 25.0%
!! TTTAAAGTCAAATTGTTCGT+GGG + chr8_1:1109793-1109812 Msa1171490:CDS 25.0%
! TTAAAGGTTTATGATGTGAA+AGG - chr8_1:1110702-1110721 None:intergenic 25.0%
!!! GGATTTCATTTTTCATGTAT+AGG + chr8_1:1111217-1111236 Msa1171490:intron 25.0%
!! GAACTTGATAATAGTAAAAG+TGG + chr8_1:1111894-1111913 Msa1171490:CDS 25.0%
! TATCCATCAAAATATGTTCA+TGG + chr8_1:1112052-1112071 Msa1171490:intron 25.0%
! AAATCGCTCAATTAAAACAA+CGG - chr8_1:1113364-1113383 None:intergenic 25.0%
!! ACATGTCAGCATTTAATTTA+TGG + chr8_1:1112260-1112279 Msa1171490:intron 25.0%
!!! AAATTTTGGGAATTAAACAG+AGG + chr8_1:1112323-1112342 Msa1171490:intron 25.0%
! ACTATATCTTGTCATTGAAA+TGG - chr8_1:1112397-1112416 None:intergenic 25.0%
! ACTTCATTTATGAACTCATT+TGG - chr8_1:1112454-1112473 None:intergenic 25.0%
! TATAAAGGGTAAAGGAATTT+GGG - chr8_1:1112763-1112782 None:intergenic 25.0%
! TTATAAAGGGTAAAGGAATT+TGG - chr8_1:1112764-1112783 None:intergenic 25.0%
! AAACAGCCACAAATTATAAA+GGG - chr8_1:1112777-1112796 None:intergenic 25.0%
! TAAACAGCCACAAATTATAA+AGG - chr8_1:1112778-1112797 None:intergenic 25.0%
!!! ACATGATTTGTTCAAAATCA+AGG + chr8_1:1113040-1113059 Msa1171490:intron 25.0%
!!! AAATTTTGGGAATTAAACAG+AGG - chr8_1:1112323-1112342 None:intergenic 25.0%
! AAATCGCTCAATTAAAACAA+TGG + chr8_1:1113364-1113383 Msa1171490:intron 25.0%
! AATCGCTCAATTAAAACAAT+GGG + chr8_1:1113365-1113384 Msa1171490:intron 25.0%
! TGTTATATGTTCATGATAAG+GGG + chr8_1:1113442-1113461 Msa1171490:intron 25.0%
! GGTTGCAATTTCAAAATATA+TGG - chr8_1:1113712-1113731 None:intergenic 25.0%
!!! GAAATTTTCATAGTTCTGAT+AGG + chr8_1:1113780-1113799 Msa1171490:intron 25.0%
! CTGTCTTTAAATAATTGACA+GGG + chr8_1:1113837-1113856 Msa1171490:intron 25.0%
! TATTGTTATCATGAAGAAGT+AGG + chr8_1:1114107-1114126 Msa1171490:intron 25.0%
! CAAAATCATAGAATACAGTT+CGG - chr8_1:1114511-1114530 None:intergenic 25.0%
! AATTGTGATCTTTCAAAGTT+TGG - chr8_1:1114832-1114851 None:intergenic 25.0%
!! GAATATTTGCTAAAAACTTC+TGG - chr8_1:1114897-1114916 None:intergenic 25.0%
! TATGTAATTTGATTGCCTAT+TGG + chr8_1:1114945-1114964 Msa1171490:intron 25.0%
!! GTAATGAAAGTTAATTTTCC+TGG + chr8_1:1115371-1115390 Msa1171490:intron 25.0%
!!! TATCTTATAAAAGAAGTACC+AGG - chr8_1:1115392-1115411 None:intergenic 25.0%
!!! GCATATATCTATTTCTGTTA+TGG + chr8_1:1115510-1115529 Msa1171490:intron 25.0%
! CTGACATGAATAATGATTTA+TGG + chr8_1:1115747-1115766 Msa1171490:intron 25.0%
!!! TAATTTGATTGGTTTATAGG+CGG + chr8_1:1116246-1116265 Msa1171490:intron 25.0%
! AAAGTATATATGTGCATAAG+TGG + chr8_1:1116543-1116562 Msa1171490:three_prime_UTR 25.0%
! AAGTATATATGTGCATAAGT+GGG + chr8_1:1116544-1116563 Msa1171490:three_prime_UTR 25.0%
!! TATTCTGAATGATAATGGGT+TGG + chr8_1:1109073-1109092 Msa1171490:five_prime_UTR 30.0%
!! ATTCTGAATGATAATGGGTT+GGG + chr8_1:1109074-1109093 Msa1171490:five_prime_UTR 30.0%
GAGAAATGTGATCTTAAGTA+TGG + chr8_1:1109200-1109219 Msa1171490:five_prime_UTR 30.0%
!!! GTTGCTTTTTGAATTGATTG+AGG + chr8_1:1109412-1109431 Msa1171490:CDS 30.0%
! TACAGTAAAGGAAGTTTTCT+CGG + chr8_1:1109583-1109602 Msa1171490:CDS 30.0%
CAAAATGAAGTTTCATGCAA+CGG + chr8_1:1109713-1109732 Msa1171490:CDS 30.0%
! CATCTTTGAAGGAAAAAGTA+TGG + chr8_1:1109900-1109919 Msa1171490:CDS 30.0%
! TTATTGCAATGGATTCCATT+GGG - chr8_1:1109995-1110014 None:intergenic 30.0%
! ATTATTGCAATGGATTCCAT+TGG - chr8_1:1109996-1110015 None:intergenic 30.0%
! CCTTATATCAAGACCATTTT+CGG - chr8_1:1110080-1110099 None:intergenic 30.0%
ACACCTCTTCTTCTATTATT+TGG - chr8_1:1110358-1110377 None:intergenic 30.0%
ATTCAGAAATCGACTATTTC+TGG + chr8_1:1110451-1110470 Msa1171490:CDS 30.0%
! TGAATGGTCAAGGTATTTAA+AGG - chr8_1:1110484-1110503 None:intergenic 30.0%
! ATCAACATTTTCCTCATGAA+TGG - chr8_1:1110500-1110519 None:intergenic 30.0%
CGAATAAATCAAGTGCAAAT+CGG + chr8_1:1110563-1110582 Msa1171490:CDS 30.0%
AACCTTTAAATGTTCTGTCT+TGG + chr8_1:1110713-1110732 Msa1171490:CDS 30.0%
AACCAAGACAGAACATTTAA+AGG - chr8_1:1110718-1110737 None:intergenic 30.0%
GATCTTGCATTATTTGTATC+TGG - chr8_1:1110963-1110982 None:intergenic 30.0%
ATGAAAGCGGATATATGTAT+CGG - chr8_1:1111372-1111391 None:intergenic 30.0%
TTGATTCAGCAATATGAAAG+CGG - chr8_1:1111385-1111404 None:intergenic 30.0%
AATCAAAAGATGTCCAAGTA+CGG - chr8_1:1111423-1111442 None:intergenic 30.0%
TGGCTAAACTCAATAAACAA+GGG - chr8_1:1111622-1111641 None:intergenic 30.0%
TTGGCTAAACTCAATAAACA+AGG - chr8_1:1111623-1111642 None:intergenic 30.0%
!! AAAATGTTTTATTCAGCCGA+TGG + chr8_1:1112018-1112037 Msa1171490:CDS 30.0%
!! ACACCATGAACATATTTTGA+TGG - chr8_1:1112058-1112077 None:intergenic 30.0%
AATCGCTCAATTAAAACAAC+GGG - chr8_1:1112163-1112182 None:intergenic 30.0%
ATATCTTGTCATTGAAATGG+AGG - chr8_1:1112394-1112413 None:intergenic 30.0%
GACAAGATATAGTTGTGAAA+AGG + chr8_1:1112404-1112423 Msa1171490:intron 30.0%
GTAGTTTCACAATGTTTGTA+AGG - chr8_1:1112499-1112518 None:intergenic 30.0%
ACAAACATTGTGAAACTACT+TGG + chr8_1:1112500-1112519 Msa1171490:intron 30.0%
TGATCATGAATTCATATACC+AGG - chr8_1:1112553-1112572 None:intergenic 30.0%
GAAAATGTGATGCATATAGT+TGG - chr8_1:1112597-1112616 None:intergenic 30.0%
CCACAAATTATAAAGGGTAA+AGG - chr8_1:1112771-1112790 None:intergenic 30.0%
CCTTTACCCTTTATAATTTG+TGG + chr8_1:1112768-1112787 Msa1171490:intron 30.0%
! GATTTGTTCAAAATCAAGGA+AGG + chr8_1:1113044-1113063 Msa1171490:intron 30.0%
AGAAAAGATGAGAGATAACA+GGG + chr8_1:1113072-1113091 Msa1171490:intron 30.0%
GATAGCAATTAGGAAGAAAA+TGG + chr8_1:1113130-1113149 Msa1171490:intron 30.0%
! ACGTGTCAGCATTTAATTTA+TGG - chr8_1:1113268-1113287 None:intergenic 30.0%
ATCGCTCAATTAAAACAATG+GGG + chr8_1:1113366-1113385 Msa1171490:intron 30.0%
AACCTCTTGTGTAAAAAACA+GGG + chr8_1:1113531-1113550 Msa1171490:intron 30.0%
ATAGCAGATATGATATCATC+AGG - chr8_1:1113733-1113752 None:intergenic 30.0%
CCTGTCAATTATTTAAAGAC+AGG - chr8_1:1113839-1113858 None:intergenic 30.0%
CCTGTCTTTAAATAATTGAC+AGG + chr8_1:1113836-1113855 Msa1171490:intron 30.0%
AAAGACAGCTATAAATCCAT+TGG - chr8_1:1113927-1113946 None:intergenic 30.0%
AGTTCATAAACACAGATATC+AGG - chr8_1:1113987-1114006 None:intergenic 30.0%
! TCTGTGTTTATGAACTTTTC+AGG + chr8_1:1113991-1114010 Msa1171490:intron 30.0%
! GTTTTTAATGCCTTCTGTAA+TGG + chr8_1:1114170-1114189 Msa1171490:intron 30.0%
! TCGCATATTAATGGATGAAT+TGG + chr8_1:1114296-1114315 Msa1171490:CDS 30.0%
! ATTAATGGATGAATTGGAGA+AGG + chr8_1:1114302-1114321 Msa1171490:CDS 30.0%
TGATTGCAATCTTGAGATTA+TGG + chr8_1:1114474-1114493 Msa1171490:intron 30.0%
ATCATATCAAGGTTGACTAA+TGG + chr8_1:1114539-1114558 Msa1171490:intron 30.0%
!!! AATTTTTTCCTGGCTTTCAA+TGG + chr8_1:1114654-1114673 Msa1171490:intron 30.0%
AGTGTATATTAGTGAGAAAG+TGG - chr8_1:1114692-1114711 None:intergenic 30.0%
! CTATACTTTCCTAGATTTTC+CGG + chr8_1:1114858-1114877 Msa1171490:CDS 30.0%
! TATACTTTCCTAGATTTTCC+GGG + chr8_1:1114859-1114878 Msa1171490:CDS 30.0%
AAATATTCCCTCTCCAAATT+CGG + chr8_1:1114909-1114928 Msa1171490:CDS 30.0%
CAATCAAATTACATACCAGT+TGG - chr8_1:1114940-1114959 None:intergenic 30.0%
TGTAAGGATTAAATAGACAG+AGG - chr8_1:1115165-1115184 None:intergenic 30.0%
!! TTAACGCCATCATTTTTGTA+AGG - chr8_1:1115181-1115200 None:intergenic 30.0%
AATAACAATACGACTGTACA+GGG - chr8_1:1115308-1115327 None:intergenic 30.0%
TAATAACAATACGACTGTAC+AGG - chr8_1:1115309-1115328 None:intergenic 30.0%
AAGTGTCTGTTATGTATCAA+TGG + chr8_1:1115632-1115651 Msa1171490:intron 30.0%
AGTGTCTGTTATGTATCAAT+GGG + chr8_1:1115633-1115652 Msa1171490:intron 30.0%
GTCATTGCTGAAAGTAAAAA+TGG + chr8_1:1115659-1115678 Msa1171490:intron 30.0%
TGCTGAAAGTAAAAATGGAA+AGG + chr8_1:1115664-1115683 Msa1171490:intron 30.0%
! ATGTCAGCACTTTTATTAGA+TGG - chr8_1:1115734-1115753 None:intergenic 30.0%
! TACATTGCTTAGACGATTTT+TGG + chr8_1:1115880-1115899 Msa1171490:intron 30.0%
!! AGAAGTACTGCAAAAATATC+AGG - chr8_1:1115934-1115953 None:intergenic 30.0%
!! TATTTTTGCAGTACTTCTGA+AGG + chr8_1:1115936-1115955 Msa1171490:intron 30.0%
GTTGAGACTGATAATTTGAT+TGG + chr8_1:1116235-1116254 Msa1171490:intron 30.0%
!!! ATTTTTGAGTGGTTTCATTC+TGG - chr8_1:1116303-1116322 None:intergenic 30.0%
GAAGCGTAGGATTTATAATT+AGG + chr8_1:1116409-1116428 Msa1171490:exon 30.0%
! GAAACACAAGATTTTGTTGA+AGG + chr8_1:1116442-1116461 Msa1171490:three_prime_UTR 30.0%
AAAGAAAGAAGCTATAACTG+TGG - chr8_1:1116502-1116521 None:intergenic 30.0%
!! TCTTTTTGTTTGTGTTTCCT+TGG + chr8_1:1116517-1116536 Msa1171490:three_prime_UTR 30.0%
CACATATATACTTTGTACCA+AGG - chr8_1:1116537-1116556 None:intergenic 30.0%
!!! TAATGGGTTGGGTAATTTTG+TGG + chr8_1:1109085-1109104 Msa1171490:five_prime_UTR 35.0%
!! AGTGAGTGTTTCAAGTGTTT+TGG + chr8_1:1109112-1109131 Msa1171490:five_prime_UTR 35.0%
!! AGTGTTTCAAGTGTTTTGGA+TGG + chr8_1:1109116-1109135 Msa1171490:five_prime_UTR 35.0%
!! AGTGTTTTGGATGGTGATAT+CGG + chr8_1:1109125-1109144 Msa1171490:five_prime_UTR 35.0%
CATTTCTCAAACTCAACCAA+AGG - chr8_1:1109188-1109207 None:intergenic 35.0%
! GTGTGTTGATGTAAATTACC+AGG + chr8_1:1109226-1109245 Msa1171490:five_prime_UTR 35.0%
ATGTAAATTACCAGGAAGCT+TGG + chr8_1:1109234-1109253 Msa1171490:five_prime_UTR 35.0%
GTTGTGAATGATAAGTGTGA+TGG + chr8_1:1109266-1109285 Msa1171490:five_prime_UTR 35.0%
! GAATGATAAGTGTGATGGAA+TGG + chr8_1:1109271-1109290 Msa1171490:exon 35.0%
! ACTGTGTTTTTCCCTGATTT+GGG + chr8_1:1109302-1109321 Msa1171490:CDS 35.0%
TCATTTCATCACCCAAATCA+GGG - chr8_1:1109316-1109335 None:intergenic 35.0%
TTCATTTCATCACCCAAATC+AGG - chr8_1:1109317-1109336 None:intergenic 35.0%
! TGATTTGGGTGATGAAATGA+AGG + chr8_1:1109316-1109335 Msa1171490:CDS 35.0%
GTATGATGTGCGACAAAAAA+AGG + chr8_1:1109469-1109488 Msa1171490:CDS 35.0%
AAAAAGGAATTTGCCGTGAT+TGG + chr8_1:1109485-1109504 Msa1171490:CDS 35.0%
ATGGACATTGAATGAGAAGA+AGG + chr8_1:1109511-1109530 Msa1171490:CDS 35.0%
TGAATGAGAAGAAGGATTTG+TGG + chr8_1:1109519-1109538 Msa1171490:CDS 35.0%
TTTGTGGAGACACTTGATAA+TGG + chr8_1:1109535-1109554 Msa1171490:CDS 35.0%
ACATATTGCTTAACAGCATC+GGG - chr8_1:1109851-1109870 None:intergenic 35.0%
CACATATTGCTTAACAGCAT+CGG - chr8_1:1109852-1109871 None:intergenic 35.0%
TGGAAACATCTTGCATATCT+TGG + chr8_1:1109920-1109939 Msa1171490:CDS 35.0%
AACATCTTGCATATCTTGGA+TGG + chr8_1:1109924-1109943 Msa1171490:CDS 35.0%
ACATCTTGCATATCTTGGAT+GGG + chr8_1:1109925-1109944 Msa1171490:CDS 35.0%
ACCTGGGTAGTAAAAAATAC+AGG + chr8_1:1109960-1109979 Msa1171490:CDS 35.0%
!!! ACCTGTATTTTTTACTACCC+AGG - chr8_1:1109964-1109983 None:intergenic 35.0%
! ATATCAAGACCATTTTCGGA+CGG - chr8_1:1110076-1110095 None:intergenic 35.0%
! CCGAAAATGGTCTTGATATA+AGG + chr8_1:1110077-1110096 Msa1171490:CDS 35.0%
!!! ATCTTTTCAGATGGACTAAG+AGG - chr8_1:1110136-1110155 None:intergenic 35.0%
ATGTTTGTGGTATTCCACAA+TGG - chr8_1:1110236-1110255 None:intergenic 35.0%
CTTCTTCTATTATTTGGAGG+TGG - chr8_1:1110352-1110371 None:intergenic 35.0%
CCTCTTCTTCTATTATTTGG+AGG - chr8_1:1110355-1110374 None:intergenic 35.0%
CCTCCAAATAATAGAAGAAG+AGG + chr8_1:1110352-1110371 Msa1171490:CDS 35.0%
GAGAAGAATTTCTGTTTCAG+TGG - chr8_1:1110394-1110413 None:intergenic 35.0%
AAATACCTTGACCATTCATG+AGG + chr8_1:1110486-1110505 Msa1171490:CDS 35.0%
! ATTTTCCTCATGAATGGTCA+AGG - chr8_1:1110494-1110513 None:intergenic 35.0%
TCATGAGGAAAATGTTGATC+AGG + chr8_1:1110501-1110520 Msa1171490:CDS 35.0%
! TTAGAGTTGATTCATCGCTT+CGG - chr8_1:1110633-1110652 None:intergenic 35.0%
AAGCGATGAATCAACTCTAA+GGG + chr8_1:1110633-1110652 Msa1171490:CDS 35.0%
! GGTACTGAGATCAAATGAAA+GGG + chr8_1:1110654-1110673 Msa1171490:CDS 35.0%
TTTATGATGTGAAAGGCAAG+AGG - chr8_1:1110695-1110714 None:intergenic 35.0%
!!! TTTTTTGTCGAGCAAAACGT+GGG + chr8_1:1110773-1110792 Msa1171490:CDS 35.0%
AATGCAAGATCACAAGTCTA+AGG + chr8_1:1110972-1110991 Msa1171490:CDS 35.0%
CACGTCTTATGATATGAAGA+CGG - chr8_1:1111099-1111118 None:intergenic 35.0%
TCATATCATAAGACGTGTCT+TGG + chr8_1:1111102-1111121 Msa1171490:CDS 35.0%
! TATTCTTCTGCACCGATAAT+TGG + chr8_1:1111196-1111215 Msa1171490:intron 35.0%
TGTAGCCAAAGCAAATTCAA+CGG + chr8_1:1111287-1111306 Msa1171490:CDS 35.0%
!! TACTGGTATCTCTACTTTTC+AGG - chr8_1:1111533-1111552 None:intergenic 35.0%
AGTAGAGATACCAGTAAATC+CGG + chr8_1:1111537-1111556 Msa1171490:CDS 35.0%
GGCTAAACTCAATAAACAAG+GGG - chr8_1:1111621-1111640 None:intergenic 35.0%
CGACATTGCATGTTATAACT+TGG + chr8_1:1111722-1111741 Msa1171490:intron 35.0%
GGATATGAAACTCTTACCAT+CGG - chr8_1:1112037-1112056 None:intergenic 35.0%
ACAATTGGCAAAATATAGGG+GGG - chr8_1:1113400-1113419 None:intergenic 35.0%
CACAATTGGCAAAATATAGG+GGG - chr8_1:1113399-1113418 None:intergenic 35.0%
GCACAATTGGCAAAATATAG+GGG - chr8_1:1113398-1113417 None:intergenic 35.0%
CGCACAATTGGCAAAATATA+GGG - chr8_1:1113397-1113416 None:intergenic 35.0%
TCGCACAATTGGCAAAATAT+AGG - chr8_1:1113396-1113415 None:intergenic 35.0%
ATCGCTCAATTAAAACAACG+GGG - chr8_1:1112162-1112181 None:intergenic 35.0%
ATCATCACTAAAACACCCAA+GGG - chr8_1:1113304-1113323 None:intergenic 35.0%
TGCTGACATGTCATCAAAAA+CGG - chr8_1:1112251-1112270 None:intergenic 35.0%
AAGAATGGGGAAATTAAGGA+AGG - chr8_1:1112362-1112381 None:intergenic 35.0%
TCGAAAGAATGGGGAAATTA+AGG - chr8_1:1112366-1112385 None:intergenic 35.0%
AAAAGGCTTTGCAATACTTC+AGG + chr8_1:1112421-1112440 Msa1171490:intron 35.0%
!! CACATTTTCTGATTGATGAC+AGG + chr8_1:1112608-1112627 Msa1171490:intron 35.0%
! CTCAAAGCACTTGTATATCT+AGG + chr8_1:1112834-1112853 Msa1171490:intron 35.0%
ACATTTGCATACTTCCTCTT+TGG + chr8_1:1112871-1112890 Msa1171490:intron 35.0%
CCAAATAAAAAGAGCCAAAG+AGG - chr8_1:1112888-1112907 None:intergenic 35.0%
!!! CCTCTTTGGCTCTTTTTATT+TGG + chr8_1:1112885-1112904 Msa1171490:intron 35.0%
TGTTCAAAATCAAGGAAGGA+TGG + chr8_1:1113048-1113067 Msa1171490:intron 35.0%
GTTCAAAATCAAGGAAGGAT+GGG + chr8_1:1113049-1113068 Msa1171490:intron 35.0%
GAGAAAAGATGAGAGATAAC+AGG + chr8_1:1113071-1113090 Msa1171490:intron 35.0%
AGCAATTAGGAAGAAAATGG+AGG + chr8_1:1113133-1113152 Msa1171490:intron 35.0%
AATTAGGAAGAAAATGGAGG+AGG + chr8_1:1113136-1113155 Msa1171490:intron 35.0%
ATCATCACTAAAACACCCAA+GGG + chr8_1:1113304-1113323 Msa1171490:intron 35.0%
TCGCACAATTGGCAAAATAT+AGG + chr8_1:1113396-1113415 Msa1171490:intron 35.0%
CGCACAATTGGCAAAATATA+GGG + chr8_1:1113397-1113416 Msa1171490:intron 35.0%
GCACAATTGGCAAAATATAG+GGG + chr8_1:1113398-1113417 Msa1171490:intron 35.0%
CAACCTCTTGTGTAAAAAAC+AGG + chr8_1:1113530-1113549 Msa1171490:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - chr8_1:1113536-1113555 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr8_1:1113536-1113555 Msa1171490:intron 35.0%
GTACAATACACCAAAATGGT+GGG + chr8_1:1113563-1113582 Msa1171490:intron 35.0%
! ATCGACAAATGTGGAAGTTT+TGG + chr8_1:1113877-1113896 Msa1171490:intron 35.0%
! TCGACAAATGTGGAAGTTTT+GGG + chr8_1:1113878-1113897 Msa1171490:intron 35.0%
TTCATTTCTCTCCAGAAGTA+CGG - chr8_1:1114054-1114073 None:intergenic 35.0%
!! TTCATTTTTCTTAGGGTCCT+TGG + chr8_1:1114210-1114229 Msa1171490:intron 35.0%
TGGAATGTGTCGCATATTAA+TGG + chr8_1:1114287-1114306 Msa1171490:CDS 35.0%
TTGGAGAAGGTAAATAAACG+AGG + chr8_1:1114315-1114334 Msa1171490:intron 35.0%
ATGAGGGATCAAGACAAAAA+GGG - chr8_1:1114351-1114370 None:intergenic 35.0%
TATGAGGGATCAAGACAAAA+AGG - chr8_1:1114352-1114371 None:intergenic 35.0%
!!! CTTCCTTGTCAATTTTTTCC+TGG + chr8_1:1114644-1114663 Msa1171490:intron 35.0%
AAGCCAGGAAAAAATTGACA+AGG - chr8_1:1114650-1114669 None:intergenic 35.0%
AAAAAGAACCATTGAAAGCC+AGG - chr8_1:1114665-1114684 None:intergenic 35.0%
TAAAAACTTCTGGCACATGA+TGG - chr8_1:1114887-1114906 None:intergenic 35.0%
AGTTGTAAATGCAATCACCT+TGG - chr8_1:1114989-1115008 None:intergenic 35.0%
!!! AGATAGCATCTTGTTTTCGT+TGG - chr8_1:1115035-1115054 None:intergenic 35.0%
! TTTTGTCTATCTCTTCTGCT+TGG - chr8_1:1115104-1115123 None:intergenic 35.0%
GATAGACAAAAGAGAATCGT+TGG + chr8_1:1115113-1115132 Msa1171490:CDS 35.0%
ATCGTTGGATCAACAAATGA+TGG + chr8_1:1115128-1115147 Msa1171490:CDS 35.0%
ATAACAATACGACTGTACAG+GGG - chr8_1:1115307-1115326 None:intergenic 35.0%
CTGTGCTGTAAAAAGAATGT+GGG - chr8_1:1115590-1115609 None:intergenic 35.0%
TCTGTGCTGTAAAAAGAATG+TGG - chr8_1:1115591-1115610 None:intergenic 35.0%
TTCCTTCTTGTGATATGTGA+TGG + chr8_1:1115790-1115809 Msa1171490:intron 35.0%
AACCATCACATATCACAAGA+AGG - chr8_1:1115795-1115814 None:intergenic 35.0%
GAAGGCGATAATGATAATCT+TGG + chr8_1:1115954-1115973 Msa1171490:CDS 35.0%
GAGACAAGATGAAAATACCA+TGG - chr8_1:1116003-1116022 None:intergenic 35.0%
TTTCATTCTGGCAATGTTGT+TGG - chr8_1:1116291-1116310 None:intergenic 35.0%
!! TTCATTCTGGCATTTTTGAG+TGG - chr8_1:1116314-1116333 None:intergenic 35.0%
!! ACTTTTGAGTGGTTTCATTC+TGG - chr8_1:1116327-1116346 None:intergenic 35.0%
!! AAAAGTGCTCTCTTGTAAAG+TGG + chr8_1:1116341-1116360 Msa1171490:CDS 35.0%
TTTGTTGAAGGAGAATGAAG+TGG + chr8_1:1116454-1116473 Msa1171490:three_prime_UTR 35.0%
!! GTGTTTTGGATGGTGATATC+GGG + chr8_1:1109126-1109145 Msa1171490:five_prime_UTR 40.0%
TTCTCAAACTCAACCAAAGG+AGG - chr8_1:1109185-1109204 None:intergenic 40.0%
TAAATTACCAGGAAGCTTGG+TGG + chr8_1:1109237-1109256 Msa1171490:five_prime_UTR 40.0%
AAATTACCAGGAAGCTTGGT+GGG + chr8_1:1109238-1109257 Msa1171490:five_prime_UTR 40.0%
! TGATAAGTGTGATGGAATGG+AGG + chr8_1:1109274-1109293 Msa1171490:exon 40.0%
! GACTGTGTTTTTCCCTGATT+TGG + chr8_1:1109301-1109320 Msa1171490:CDS 40.0%
TTGGGTGATGAAATGAAGGT+CGG + chr8_1:1109320-1109339 Msa1171490:CDS 40.0%
TGAAATGAAGGTCGGAATTC+AGG + chr8_1:1109328-1109347 Msa1171490:CDS 40.0%
! AAATGCGGATTACTCAGGAT+TGG + chr8_1:1109351-1109370 Msa1171490:CDS 40.0%
! AATGCGGATTACTCAGGATT+GGG + chr8_1:1109352-1109371 Msa1171490:CDS 40.0%
TCAGGATTGGGATGAAGTTA+CGG + chr8_1:1109364-1109383 Msa1171490:CDS 40.0%
GATTGAGGAGTTGTATCTTC+CGG + chr8_1:1109427-1109446 Msa1171490:CDS 40.0%
CAAATTTGCCTTACCGATAC+CGG - chr8_1:1109449-1109468 None:intergenic 40.0%
AATTTGCCGTGATTGGTGAA+TGG + chr8_1:1109492-1109511 Msa1171490:CDS 40.0%
CAATGTCCATTCACCAATCA+CGG - chr8_1:1109501-1109520 None:intergenic 40.0%
!! CACTTGATAATGGAGGTAGT+TGG + chr8_1:1109545-1109564 Msa1171490:CDS 40.0%
CTACTTGGCTGTTACAGTAA+AGG + chr8_1:1109571-1109590 Msa1171490:CDS 40.0%
AATTCACCTGATTCCATCTC+CGG - chr8_1:1109620-1109639 None:intergenic 40.0%
ATGGGAAATTGACATTGACC+TGG + chr8_1:1109943-1109962 Msa1171490:CDS 40.0%
TGGGAAATTGACATTGACCT+GGG + chr8_1:1109944-1109963 Msa1171490:CDS 40.0%
! ATTTGGAACATGACAGTCAC+CGG - chr8_1:1110110-1110129 None:intergenic 40.0%
!!! CGGTTCTGAATCTTTTCAGA+TGG - chr8_1:1110145-1110164 None:intergenic 40.0%
TCACAACTAGAGGAGATACT+CGG - chr8_1:1110165-1110184 None:intergenic 40.0%
TTATTGTCCTCAAGCCATTG+TGG + chr8_1:1110219-1110238 Msa1171490:CDS 40.0%
TCTTCTTGAGTGCATGTTTG+TGG - chr8_1:1110249-1110268 None:intergenic 40.0%
CGAAATCATCTGAAAGCAGA+AGG + chr8_1:1110310-1110329 Msa1171490:CDS 40.0%
ATCATCTGAAAGCAGAAGGA+TGG + chr8_1:1110314-1110333 Msa1171490:CDS 40.0%
AAACGCTTGAGGAATTCAGA+TGG + chr8_1:1110592-1110611 Msa1171490:CDS 40.0%
GAAGCGATGAATCAACTCTA+AGG + chr8_1:1110632-1110651 Msa1171490:CDS 40.0%
!! GGGTACTGAGATCAAATGAA+AGG + chr8_1:1110653-1110672 Msa1171490:CDS 40.0%
!! ATCAAATGAAAGGGTGCCAA+AGG + chr8_1:1110663-1110682 Msa1171490:CDS 40.0%
ACAGCAACATGTTGTTACCA+AGG + chr8_1:1110743-1110762 Msa1171490:CDS 40.0%
CATGTTGTTACCAAGGTCTA+AGG + chr8_1:1110750-1110769 Msa1171490:CDS 40.0%
CGACAAAAAACCTTAGACCT+TGG - chr8_1:1110763-1110782 None:intergenic 40.0%
!!! GTTTTTTGTCGAGCAAAACG+TGG + chr8_1:1110772-1110791 Msa1171490:CDS 40.0%
TCCTTCGAATTTCATGCTAC+TGG + chr8_1:1110874-1110893 Msa1171490:CDS 40.0%
ACCAAGTGCCAATATCTTTC+TGG + chr8_1:1110912-1110931 Msa1171490:CDS 40.0%
AGATAAGAGCGATCTACCAT+CGG - chr8_1:1110938-1110957 None:intergenic 40.0%
GACAAAACCATTCACCATCA+GGG - chr8_1:1111247-1111266 None:intergenic 40.0%
GTAGCCAAAGCAAATTCAAC+GGG + chr8_1:1111288-1111307 Msa1171490:CDS 40.0%
TAGCCAAAGCAAATTCAACG+GGG + chr8_1:1111289-1111308 Msa1171490:CDS 40.0%
GTTCACACTGAATGCATGTA+AGG - chr8_1:1111334-1111353 None:intergenic 40.0%
CATACTGTACTTACCGTACT+TGG + chr8_1:1111407-1111426 Msa1171490:intron 40.0%
CACGCAACATGATCTACATT+AGG - chr8_1:1111510-1111529 None:intergenic 40.0%
CACATAACTTCCGGATTTAC+TGG - chr8_1:1111550-1111569 None:intergenic 40.0%
CAGTAAATCCGGAAGTTATG+TGG + chr8_1:1111548-1111567 Msa1171490:CDS 40.0%
!! ACGAGCATTGAGACTTGATT+TGG + chr8_1:1111698-1111717 Msa1171490:intron 40.0%
!! CGAGCATTGAGACTTGATTT+GGG + chr8_1:1111699-1111718 Msa1171490:intron 40.0%
CTGTCCTAACAGACTTTGAA+GGG - chr8_1:1111808-1111827 None:intergenic 40.0%
AAGTTCACAACTCTCAGAGT+CGG - chr8_1:1111880-1111899 None:intergenic 40.0%
CAAGAAGAGGATTCCTTTAG+GGG - chr8_1:1111984-1112003 None:intergenic 40.0%
GCAAGAAGAGGATTCCTTTA+GGG - chr8_1:1111985-1112004 None:intergenic 40.0%
TGCAAGAAGAGGATTCCTTT+AGG - chr8_1:1111986-1112005 None:intergenic 40.0%
AGAAAGGGGGAAAATGATAG+GGG - chr8_1:1113338-1113357 None:intergenic 40.0%
CAGAAAGGGGGAAAATGATA+GGG - chr8_1:1113337-1113356 None:intergenic 40.0%
TCATCACTAAAACACCCAAG+GGG - chr8_1:1113305-1113324 None:intergenic 40.0%
CATCATCACTAAAACACCCA+AGG - chr8_1:1113303-1113322 None:intergenic 40.0%
TCTTGTCATTGAAATGGAGG+AGG - chr8_1:1112391-1112410 None:intergenic 40.0%
AAGATGAGAGATAACAGGGT+AGG + chr8_1:1113076-1113095 Msa1171490:intron 40.0%
TAGGAGAAAGCGAGCAATTA+GGG + chr8_1:1113095-1113114 Msa1171490:intron 40.0%
ATCGAAGGAATGGGGAAATT+AGG + chr8_1:1113160-1113179 Msa1171490:intron 40.0%
TCGAAGGAATGGGGAAATTA+GGG + chr8_1:1113161-1113180 Msa1171490:intron 40.0%
TGCTGACACGTCATCAAAAA+CGG + chr8_1:1113277-1113296 Msa1171490:intron 40.0%
CATCATCACTAAAACACCCA+AGG + chr8_1:1113303-1113322 Msa1171490:intron 40.0%
TCATCACTAAAACACCCAAG+GGG + chr8_1:1113305-1113324 Msa1171490:intron 40.0%
CAGAAAGGGGGAAAATGATA+GGG + chr8_1:1113337-1113356 Msa1171490:intron 40.0%
AGAAAGGGGGAAAATGATAG+GGG + chr8_1:1113338-1113357 Msa1171490:intron 40.0%
CTGCGTACAATACACCAAAA+TGG + chr8_1:1113559-1113578 Msa1171490:intron 40.0%
CGTACAATACACCAAAATGG+TGG + chr8_1:1113562-1113581 Msa1171490:intron 40.0%
GGTTATGAACTATGATCAGC+AGG - chr8_1:1113691-1113710 None:intergenic 40.0%
CGAACATCTTAGCAAAACTG+AGG - chr8_1:1113756-1113775 None:intergenic 40.0%
TCTGGAGAGAAATGAAGATC+TGG + chr8_1:1114058-1114077 Msa1171490:CDS 40.0%
TGGTCAGTGTAGCAACTATT+AGG + chr8_1:1114078-1114097 Msa1171490:CDS 40.0%
TGAAATCTGGTACCAACAAG+AGG - chr8_1:1114255-1114274 None:intergenic 40.0%
ATGACGACGATACTGAAATC+TGG - chr8_1:1114268-1114287 None:intergenic 40.0%
AGATTTCAGTATCGTCGTCA+TGG + chr8_1:1114267-1114286 Msa1171490:CDS 40.0%
CTCAAGATTGCAATCACCAT+TGG - chr8_1:1114470-1114489 None:intergenic 40.0%
AGGAAGTTGCTAATCAAACC+AGG - chr8_1:1114630-1114649 None:intergenic 40.0%
! CTTTGAAAATCCAAAAGCGC+CGG - chr8_1:1114806-1114825 None:intergenic 40.0%
TAAATGCAATCACCTTGGCA+AGG - chr8_1:1114984-1115003 None:intergenic 40.0%
CGAAAACAAGATGCTATCTC+CGG + chr8_1:1115036-1115055 Msa1171490:CDS 40.0%
ATTACTAGCACTACTGCTTC+CGG - chr8_1:1115058-1115077 None:intergenic 40.0%
GCTTGGTAAACTTCAGAAAC+TGG - chr8_1:1115087-1115106 None:intergenic 40.0%
TTGTGATAGAGTGACTGCAA+AGG + chr8_1:1115216-1115235 Msa1171490:intron 40.0%
GCAAAGGCGATCTAATATTG+TGG + chr8_1:1115232-1115251 Msa1171490:intron 40.0%
CTAATATTGTGGCCCTGAAA+AGG + chr8_1:1115243-1115262 Msa1171490:intron 40.0%
! TCAAGCGACTTTCCTTTTCA+GGG - chr8_1:1115258-1115277 None:intergenic 40.0%
!! TACAGGGGGGTTCATTTTTA+CGG - chr8_1:1115292-1115311 None:intergenic 40.0%
TAACAATACGACTGTACAGG+GGG - chr8_1:1115306-1115325 None:intergenic 40.0%
GTAAAAAGAATGTGGGATGC+TGG - chr8_1:1115583-1115602 None:intergenic 40.0%
CACTGTGTAGTATAACACGA+TGG - chr8_1:1116025-1116044 None:intergenic 40.0%
AATAACCGCTAATGCTGTTG+TGG + chr8_1:1116099-1116118 Msa1171490:intron 40.0%
!!! TACAAGAGAGCACTTTTGAG+TGG - chr8_1:1116338-1116357 None:intergenic 40.0%
!! TGGGTTGGGTAATTTTGTGG+AGG + chr8_1:1109088-1109107 Msa1171490:five_prime_UTR 45.0%
ATCGGGTCATGGAGTAAACA+TGG + chr8_1:1109143-1109162 Msa1171490:five_prime_UTR 45.0%
TCGGGTCATGGAGTAAACAT+GGG + chr8_1:1109144-1109163 Msa1171490:five_prime_UTR 45.0%
GGAGTAAACATGGGAGGATT+AGG + chr8_1:1109153-1109172 Msa1171490:five_prime_UTR 45.0%
AGGTCGGAATTCAGGAAATG+CGG + chr8_1:1109336-1109355 Msa1171490:CDS 45.0%
! TCAGGAAATGCGGATTACTC+AGG + chr8_1:1109346-1109365 Msa1171490:CDS 45.0%
GGATGAAGTTACGGAGAGAT+GGG + chr8_1:1109373-1109392 Msa1171490:CDS 45.0%
GGAGTTGTATCTTCCGGTAT+CGG + chr8_1:1109433-1109452 Msa1171490:CDS 45.0%
!! TGTATCTTCCGGTATCGGTA+AGG + chr8_1:1109438-1109457 Msa1171490:CDS 45.0%
!! CGGTATCGGTAAGGCAAATT+TGG + chr8_1:1109447-1109466 Msa1171490:CDS 45.0%
!! GTGGAGACACTTGATAATGG+AGG + chr8_1:1109538-1109557 Msa1171490:CDS 45.0%
TTTCTCGGCCTTGAAACTTC+CGG + chr8_1:1109598-1109617 Msa1171490:CDS 45.0%
TTCCATCTCCGGAAGTTTCA+AGG - chr8_1:1109609-1109628 None:intergenic 45.0%
AAACTTCCGGAGATGGAATC+AGG + chr8_1:1109611-1109630 Msa1171490:CDS 45.0%
TGTTGTTCCTCCAGCTGAAA+AGG + chr8_1:1109676-1109695 Msa1171490:CDS 45.0%
! TTAGGCAAGTCCTTTTCAGC+TGG - chr8_1:1109689-1109708 None:intergenic 45.0%
TTCTGACTCCAAGGCAACTA+TGG + chr8_1:1109877-1109896 Msa1171490:CDS 45.0%
CAAAGATGCCATAGTTGCCT+TGG - chr8_1:1109888-1109907 None:intergenic 45.0%
GGCAACTATGGCATCTTTGA+AGG + chr8_1:1109889-1109908 Msa1171490:CDS 45.0%
! TTGCAATGGATTCCATTGGG+TGG - chr8_1:1109992-1110011 None:intergenic 45.0%
AACTCTTCTCCGTCCGAAAA+TGG + chr8_1:1110064-1110083 Msa1171490:CDS 45.0%
! CTTGATATAAGGCATCCTGC+CGG + chr8_1:1110088-1110107 Msa1171490:CDS 45.0%
!! GATGGACTAAGAGGCACATT+TGG - chr8_1:1110127-1110146 None:intergenic 45.0%
GAGTATCTCCTCTAGTTGTG+AGG + chr8_1:1110164-1110183 Msa1171490:CDS 45.0%
TGGTATTCCACAATGGCTTG+AGG - chr8_1:1110229-1110248 None:intergenic 45.0%
CACTCAAGAAGACCTGCAAT+CGG + chr8_1:1110257-1110276 Msa1171490:CDS 45.0%
ACTCAAGAAGACCTGCAATC+GGG + chr8_1:1110258-1110277 Msa1171490:CDS 45.0%
! CCTTTTATATGCCCGATTGC+AGG - chr8_1:1110272-1110291 None:intergenic 45.0%
CCTGCAATCGGGCATATAAA+AGG + chr8_1:1110269-1110288 Msa1171490:CDS 45.0%
TCTGGGCGAATAACTCATGA+AGG + chr8_1:1110811-1110830 Msa1171490:CDS 45.0%
GCCAGTAGCATGAAATTCGA+AGG - chr8_1:1110878-1110897 None:intergenic 45.0%
GATATTGGCACTTGGTCTGA+TGG - chr8_1:1110908-1110927 None:intergenic 45.0%
GCCAGAAAGATATTGGCACT+TGG - chr8_1:1110916-1110935 None:intergenic 45.0%
ACCATCGGCCAGAAAGATAT+TGG - chr8_1:1110923-1110942 None:intergenic 45.0%
GCAAGATCACAAGTCTAAGG+AGG + chr8_1:1110975-1110994 Msa1171490:CDS 45.0%
! ATTTGTTCCGTTTGCCGCTT+TGG + chr8_1:1111045-1111064 Msa1171490:CDS 45.0%
AAAGAAGTTCGCCTCCAAAG+CGG - chr8_1:1111062-1111081 None:intergenic 45.0%
TCATAAGACGTGTCTTGGTC+TGG + chr8_1:1111107-1111126 Msa1171490:CDS 45.0%
CATGTATAGGATCTCCCTGA+TGG + chr8_1:1111230-1111249 Msa1171490:intron 45.0%
GGACAAAACCATTCACCATC+AGG - chr8_1:1111248-1111267 None:intergenic 45.0%
!! TTTTGTCCATCGTGTCGATG+CGG + chr8_1:1111260-1111279 Msa1171490:CDS 45.0%
AGCCAAAGCAAATTCAACGG+GGG + chr8_1:1111290-1111309 Msa1171490:CDS 45.0%
CTGCGGAAAAGACTGTGAAA+AGG + chr8_1:1111581-1111600 Msa1171490:CDS 45.0%
ACAGCCCTTCAAAGTCTGTT+AGG + chr8_1:1111801-1111820 Msa1171490:CDS 45.0%
GCTGTCCTAACAGACTTTGA+AGG - chr8_1:1111809-1111828 None:intergenic 45.0%
TTAGGACAGCCAGTTTCAGT+GGG + chr8_1:1111819-1111838 Msa1171490:CDS 45.0%
TGAATGTTTCGAGCCCCTAA+AGG + chr8_1:1111968-1111987 Msa1171490:CDS 45.0%
CATCAGATCTCTGCAAGAAG+AGG - chr8_1:1111997-1112016 None:intergenic 45.0%
CTCTTCTTGCAGAGATCTGA+TGG + chr8_1:1111995-1112014 Msa1171490:CDS 45.0%
GAAAGGGGGAAAATGATAGG+GGG - chr8_1:1113339-1113358 None:intergenic 45.0%
CCAGAAAGGGGGAAAATGAT+AGG - chr8_1:1113336-1113355 None:intergenic 45.0%
! CCTATCATTTTCCCCCTTTC+TGG + chr8_1:1112189-1112208 Msa1171490:intron 45.0%
!!! CATTTTCCCCCTTTCTGGTT+TGG + chr8_1:1112194-1112213 Msa1171490:intron 45.0%
TCATGATGTTGAGAGACTCC+TGG + chr8_1:1112532-1112551 Msa1171490:intron 45.0%
GTAGGAGAAAGCGAGCAATT+AGG + chr8_1:1113094-1113113 Msa1171490:intron 45.0%
AGAAAGCGAGCAATTAGGGA+TGG + chr8_1:1113099-1113118 Msa1171490:intron 45.0%
GAAAGCGAGCAATTAGGGAT+GGG + chr8_1:1113100-1113119 Msa1171490:intron 45.0%
AAAGCGAGCAATTAGGGATG+GGG + chr8_1:1113101-1113120 Msa1171490:intron 45.0%
GGGGGAGAAAGATAGCAATT+AGG + chr8_1:1113120-1113139 Msa1171490:intron 45.0%
AGGAATGGGGAAATTAGGGA+AGG + chr8_1:1113165-1113184 Msa1171490:intron 45.0%
!!! CATTTTCCCCCTTTCTGGTT+TGG - chr8_1:1112194-1112213 None:intergenic 45.0%
! CCTATCATTTTCCCCCTTTC+TGG - chr8_1:1112189-1112208 None:intergenic 45.0%
CCAGAAAGGGGGAAAATGAT+AGG + chr8_1:1113336-1113355 Msa1171490:intron 45.0%
GAAAGGGGGAAAATGATAGG+GGG + chr8_1:1113339-1113358 Msa1171490:intron 45.0%
GGGGTGTAAAATCGCACAAT+TGG + chr8_1:1113385-1113404 Msa1171490:intron 45.0%
GTTGTTGTCACGTGACTGAA+AGG + chr8_1:1113485-1113504 Msa1171490:intron 45.0%
AAGGTCACAGGTTCAAGTCT+TGG + chr8_1:1113504-1113523 Msa1171490:intron 45.0%
TAACAGAAAAAAGGGCAGCC+CGG - chr8_1:1113629-1113648 None:intergenic 45.0%
GGGTTTCTATTCCGTACTTC+TGG + chr8_1:1114040-1114059 Msa1171490:CDS 45.0%
ATCAAGACGGCCATTACAGA+AGG - chr8_1:1114183-1114202 None:intergenic 45.0%
TCTTAGGGTCCTTGGAGATA+AGG + chr8_1:1114218-1114237 Msa1171490:intron 45.0%
CTTCAGCTACCTTATCTCCA+AGG - chr8_1:1114230-1114249 None:intergenic 45.0%
! GTAGCTGAAGTACCTCTTGT+TGG + chr8_1:1114240-1114259 Msa1171490:CDS 45.0%
GAAAAGGGGACGTCATATGA+GGG - chr8_1:1114367-1114386 None:intergenic 45.0%
TGAAAAGGGGACGTCATATG+AGG - chr8_1:1114368-1114387 None:intergenic 45.0%
CATCAGAAGCTCACGCAATT+AGG + chr8_1:1114730-1114749 Msa1171490:intron 45.0%
TTCCCACTGTGGTAGATACA+TGG + chr8_1:1114779-1114798 Msa1171490:CDS 45.0%
GTCCATGTATCTACCACAGT+GGG - chr8_1:1114784-1114803 None:intergenic 45.0%
ACTGTGGTAGATACATGGAC+CGG + chr8_1:1114784-1114803 Msa1171490:CDS 45.0%
TGATGGTACCCGGAAAATCT+AGG - chr8_1:1114870-1114889 None:intergenic 45.0%
GGCAAAACCGAATTTGGAGA+GGG - chr8_1:1114919-1114938 None:intergenic 45.0%
TGGCAAAACCGAATTTGGAG+AGG - chr8_1:1114920-1114939 None:intergenic 45.0%
CCAGTTGGCAAAACCGAATT+TGG - chr8_1:1114925-1114944 None:intergenic 45.0%
! CCAAATTCGGTTTTGCCAAC+TGG + chr8_1:1114922-1114941 Msa1171490:CDS 45.0%
GGTACACACTTGTCTCCAAT+AGG - chr8_1:1114963-1114982 None:intergenic 45.0%
! CTCAAGCGACTTTCCTTTTC+AGG - chr8_1:1115259-1115278 None:intergenic 45.0%
AACAATACGACTGTACAGGG+GGG - chr8_1:1115305-1115324 None:intergenic 45.0%
! TGTTATCGACTGTGTCACCA+TGG + chr8_1:1115983-1116002 Msa1171490:CDS 45.0%
GTGTCAGTGTTGTCAATGTC+AGG - chr8_1:1116158-1116177 None:intergenic 45.0%
TGTTGTTGGTCCACAGGAAT+TGG - chr8_1:1116277-1116296 None:intergenic 45.0%
TGCTCTCTTGTAAAGTGGAG+TGG + chr8_1:1116346-1116365 Msa1171490:CDS 45.0%
TCTTGTAAAGTGGAGTGGAC+TGG + chr8_1:1116351-1116370 Msa1171490:CDS 45.0%
!!! AAACAAAAAAAATAAAATTT+TGG + chr8_1:1112309-1112328 Msa1171490:intron 5.0%
!!! AACAAAAAAAATAAAATTTT+GGG + chr8_1:1112310-1112329 Msa1171490:intron 5.0%
TGGATGGTGATATCGGGTCA+TGG + chr8_1:1109132-1109151 Msa1171490:five_prime_UTR 50.0%
GGTCATGGAGTAAACATGGG+AGG + chr8_1:1109147-1109166 Msa1171490:five_prime_UTR 50.0%
! AACTCAACCAAAGGAGGCAC+TGG - chr8_1:1109179-1109198 None:intergenic 50.0%
! AGTGTGATGGAATGGAGGAG+AGG + chr8_1:1109279-1109298 Msa1171490:exon 50.0%
GGGATGAAGTTACGGAGAGA+TGG + chr8_1:1109372-1109391 Msa1171490:CDS 50.0%
!! GGAGGTAGTTGGTGACTACT+TGG + chr8_1:1109556-1109575 Msa1171490:CDS 50.0%
GAAGTTTCATGCAACGGTGC+TGG + chr8_1:1109719-1109738 Msa1171490:CDS 50.0%
TGTGCTTGCTTCTGACTCCA+AGG + chr8_1:1109868-1109887 Msa1171490:CDS 50.0%
TACAGGTACAAGCCACCCAA+TGG + chr8_1:1109977-1109996 Msa1171490:CDS 50.0%
GGACGGAGAAGAGTTCATCA+TGG - chr8_1:1110059-1110078 None:intergenic 50.0%
GATGGAAGCCTCACAACTAG+AGG - chr8_1:1110175-1110194 None:intergenic 50.0%
TCATCTGCCACTGCAACAGA+TGG - chr8_1:1110193-1110212 None:intergenic 50.0%
ATCGGAAGCGAAAACGCTTG+AGG + chr8_1:1110581-1110600 Msa1171490:CDS 50.0%
! TTCGCCCAGAAAGCACAGTA+CGG - chr8_1:1110801-1110820 None:intergenic 50.0%
! GCCAATATCTTTCTGGCCGA+TGG + chr8_1:1110919-1110938 Msa1171490:CDS 50.0%
CCTTGACGCAAATGACTGTG+TGG - chr8_1:1111012-1111031 None:intergenic 50.0%
CCACACAGTCATTTGCGTCA+AGG + chr8_1:1111009-1111028 Msa1171490:CDS 50.0%
TAAGACGTGTCTTGGTCTGG+AGG + chr8_1:1111110-1111129 Msa1171490:CDS 50.0%
! AGGATCTCCCTGATGGTGAA+TGG + chr8_1:1111237-1111256 Msa1171490:intron 50.0%
! TTTGTCCATCGTGTCGATGC+GGG + chr8_1:1111261-1111280 Msa1171490:CDS 50.0%
! CACCCCCGTTGAATTTGCTT+TGG - chr8_1:1111295-1111314 None:intergenic 50.0%
CAAAGCAAATTCAACGGGGG+TGG + chr8_1:1111293-1111312 Msa1171490:CDS 50.0%
CCGGCTTTCCACATAACTTC+CGG - chr8_1:1111559-1111578 None:intergenic 50.0%
CCGGAAGTTATGTGGAAAGC+CGG + chr8_1:1111556-1111575 Msa1171490:CDS 50.0%
! TATGTGGAAAGCCGGTTCTG+CGG + chr8_1:1111564-1111583 Msa1171490:CDS 50.0%
! CACAGTCTTTTCCGCAGAAC+CGG - chr8_1:1111578-1111597 None:intergenic 50.0%
GTTAGGACAGCCAGTTTCAG+TGG + chr8_1:1111818-1111837 Msa1171490:CDS 50.0%
TGGGTGCGGACAATCTAACA+TGG + chr8_1:1111838-1111857 Msa1171490:CDS 50.0%
GGGGTGCAAAATCGCACAAT+TGG - chr8_1:1112143-1112162 None:intergenic 50.0%
!! TTTCCCCCTTTCTGGTTTGG+AGG + chr8_1:1112197-1112216 Msa1171490:intron 50.0%
!! GAGGAGGCATCGAAAGAATG+GGG - chr8_1:1112375-1112394 None:intergenic 50.0%
!! GGAGGAGGCATCGAAAGAAT+GGG - chr8_1:1112376-1112395 None:intergenic 50.0%
!! TGGAGGAGGCATCGAAAGAA+TGG - chr8_1:1112377-1112396 None:intergenic 50.0%
AAGCGAGCAATTAGGGATGG+GGG + chr8_1:1113102-1113121 Msa1171490:intron 50.0%
!! GAAAATGGAGGAGGCATCGA+AGG + chr8_1:1113145-1113164 Msa1171490:intron 50.0%
!! TTTCCCCCTTTCTGGTTTGG+AGG - chr8_1:1112197-1112216 None:intergenic 50.0%
GTTCATGATAAGGGGAGCCT+TGG + chr8_1:1113450-1113469 Msa1171490:intron 50.0%
ACAACTTTACCGTTGCGCCA+AGG - chr8_1:1113470-1113489 None:intergenic 50.0%
TCACGTGACTGAAAGGTCAC+AGG + chr8_1:1113492-1113511 Msa1171490:intron 50.0%
GAAGCTCACGCAATTAGGAC+TGG + chr8_1:1114735-1114754 Msa1171490:intron 50.0%
TTTACCTGCTGTTCCCACTG+TGG + chr8_1:1114768-1114787 Msa1171490:CDS 50.0%
GGTCCATGTATCTACCACAG+TGG - chr8_1:1114785-1114804 None:intergenic 50.0%
TTCTGGCACATGATGGTACC+CGG - chr8_1:1114880-1114899 None:intergenic 50.0%
GACAAGTGTGTACCTTGCCA+AGG + chr8_1:1114969-1114988 Msa1171490:intron 50.0%
! AATGTGGGATGCTGGTGTTG+TGG - chr8_1:1115575-1115594 None:intergenic 50.0%
TAGCGCCACAACAGCATTAG+CGG - chr8_1:1116107-1116126 None:intergenic 50.0%
TGGCAATGTTGTTGGTCCAC+AGG - chr8_1:1116283-1116302 None:intergenic 50.0%
GACTGGTGTACTCTAGACGA+AGG + chr8_1:1116368-1116387 Msa1171490:CDS 50.0%
GGTGTACTCTAGACGAAGGA+AGG + chr8_1:1116372-1116391 Msa1171490:CDS 50.0%
TCTAGACGAAGGAAGGCGAA+AGG + chr8_1:1116379-1116398 Msa1171490:CDS 50.0%
CTAGACGAAGGAAGGCGAAA+GGG + chr8_1:1116380-1116399 Msa1171490:CDS 50.0%
TAGACGAAGGAAGGCGAAAG+GGG + chr8_1:1116381-1116400 Msa1171490:CDS 50.0%
GAAAGGGGAACATGAAGCGT+AGG + chr8_1:1116396-1116415 Msa1171490:CDS 50.0%
GATTAGGCCAGTGCCTCCTT+TGG + chr8_1:1109169-1109188 Msa1171490:five_prime_UTR 55.0%
! TACCAGGAAGCTTGGTGGGA+AGG + chr8_1:1109242-1109261 Msa1171490:five_prime_UTR 55.0%
GGCCTTGAAACTTCCGGAGA+TGG + chr8_1:1109604-1109623 Msa1171490:CDS 55.0%
! GGCAAGTCCTTTTCAGCTGG+AGG - chr8_1:1109686-1109705 None:intergenic 55.0%
!! ATGCAACGGTGCTGGTGAAG+CGG + chr8_1:1109727-1109746 Msa1171490:CDS 55.0%
GAGGCTTCCATCTGTTGCAG+TGG + chr8_1:1110183-1110202 Msa1171490:CDS 55.0%
GATTCATCGCTTCGGCGCTT+TGG - chr8_1:1110625-1110644 None:intergenic 55.0%
AGGCAAGAGGAAGACGCCTT+TGG - chr8_1:1110682-1110701 None:intergenic 55.0%
GGCACCGTACTGTGCTTTCT+GGG + chr8_1:1110794-1110813 Msa1171490:CDS 55.0%
!! TGTTCCGTTTGCCGCTTTGG+AGG + chr8_1:1111048-1111067 Msa1171490:CDS 55.0%
TTCGCCTCCAAAGCGGCAAA+CGG - chr8_1:1111055-1111074 None:intergenic 55.0%
ACGTGTCTTGGTCTGGAGGT+AGG + chr8_1:1111114-1111133 Msa1171490:intron 55.0%
! CAAATCCCGCATCGACACGA+TGG - chr8_1:1111269-1111288 None:intergenic 55.0%
CAAATTCAACGGGGGTGGTG+AGG + chr8_1:1111298-1111317 Msa1171490:CDS 55.0%
ACAGCCAGTTTCAGTGGGTG+CGG + chr8_1:1111824-1111843 Msa1171490:CDS 55.0%
TTGTCCGCACCCACTGAAAC+TGG - chr8_1:1111831-1111850 None:intergenic 55.0%
AGGGGCCTCCAAACCAGAAA+GGG - chr8_1:1113323-1113342 None:intergenic 55.0%
AAGGGGCCTCCAAACCAGAA+AGG - chr8_1:1113322-1113341 None:intergenic 55.0%
!! TTTCTGGTTTGGAGGCCCCT+TGG + chr8_1:1112205-1112224 Msa1171490:intron 55.0%
!! TTCTGGTTTGGAGGCCCCTT+GGG + chr8_1:1112206-1112225 Msa1171490:intron 55.0%
!! TGGAGGAGGCATCGAAGGAA+TGG + chr8_1:1113150-1113169 Msa1171490:intron 55.0%
!! GGAGGAGGCATCGAAGGAAT+GGG + chr8_1:1113151-1113170 Msa1171490:intron 55.0%
!! GAGGAGGCATCGAAGGAATG+GGG + chr8_1:1113152-1113171 Msa1171490:intron 55.0%
!! TTCTGGTTTGGAGGCCCCTT+GGG - chr8_1:1112206-1112225 None:intergenic 55.0%
!! TTTCTGGTTTGGAGGCCCCT+TGG - chr8_1:1112205-1112224 None:intergenic 55.0%
AAGGGGCCTCCAAACCAGAA+AGG + chr8_1:1113322-1113341 Msa1171490:intron 55.0%
AGGGGCCTCCAAACCAGAAA+GGG + chr8_1:1113323-1113342 Msa1171490:intron 55.0%
! GGGAAAGGGTCCCACCATTT+TGG - chr8_1:1113576-1113595 None:intergenic 55.0%
CATACGCAGGGTCTGGGAAA+GGG - chr8_1:1113590-1113609 None:intergenic 55.0%
TTTCCCAGACCCTGCGTATG+CGG + chr8_1:1113590-1113609 Msa1171490:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr8_1:1113602-1113621 None:intergenic 55.0%
TCTACCACAGTGGGAACAGC+AGG - chr8_1:1114775-1114794 None:intergenic 55.0%
! GATACATGGACCGGCGCTTT+TGG + chr8_1:1114793-1114812 Msa1171490:CDS 55.0%
CACCTTCCCACCAAGCTTCC+TGG - chr8_1:1109247-1109266 None:intergenic 60.0%
GATGGGAGCGACGAGGGAAA+TGG + chr8_1:1109390-1109409 Msa1171490:CDS 60.0%
GGAACATGACAGTCACCGGC+AGG - chr8_1:1110106-1110125 None:intergenic 60.0%
! GGGCACCGTACTGTGCTTTC+TGG + chr8_1:1110793-1110812 Msa1171490:CDS 60.0%
GGGCCTCCAAACCAGAAAGG+GGG - chr8_1:1113325-1113344 None:intergenic 60.0%
GGGGCCTCCAAACCAGAAAG+GGG - chr8_1:1113324-1113343 None:intergenic 60.0%
GGGGCCTCCAAACCAGAAAG+GGG + chr8_1:1113324-1113343 Msa1171490:intron 60.0%
GGGCCTCCAAACCAGAAAGG+GGG + chr8_1:1113325-1113344 Msa1171490:intron 60.0%
TAAGGGGAGCCTTGGCGCAA+CGG + chr8_1:1113458-1113477 Msa1171490:intron 60.0%
GCATACGCAGGGTCTGGGAA+AGG - chr8_1:1113591-1113610 None:intergenic 60.0%
TTCCCAGACCCTGCGTATGC+GGG + chr8_1:1113591-1113610 Msa1171490:intron 60.0%
GCTAAAGCTCCCGCATACGC+AGG - chr8_1:1113603-1113622 None:intergenic 60.0%
! ATGCGGGAGCTTTAGCGCAC+CGG + chr8_1:1113607-1113626 Msa1171490:intron 60.0%
GGCGGAGCAACCAATTCCTG+TGG + chr8_1:1116264-1116283 Msa1171490:intron 60.0%
ACGGAGAGATGGGAGCGACG+AGG + chr8_1:1109383-1109402 Msa1171490:CDS 65.0%
CGGAGAGATGGGAGCGACGA+GGG + chr8_1:1109384-1109403 Msa1171490:CDS 65.0%
CATCGCTTCGGCGCTTTGGC+AGG - chr8_1:1110621-1110640 None:intergenic 65.0%
CTCCCGCATACGCAGGGTCT+GGG - chr8_1:1113596-1113615 None:intergenic 65.0%
! TGCGGGAGCTTTAGCGCACC+GGG + chr8_1:1113608-1113627 Msa1171490:intron 65.0%
GCTCCCGCATACGCAGGGTC+TGG - chr8_1:1113597-1113616 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 1109039 1116567 1109039 ID=Msa1171490;Name=Msa1171490
chr8_1 mRNA 1109039 1116567 1109039 ID=Msa1171490-mRNA-1;Parent=Msa1171490;Name=Msa1171490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=251|1|1|1|1|0.9|10|150|1007
chr8_1 exon 1109039 1111131 1109039 ID=Msa1171490-mRNA-1:exon:374;Parent=Msa1171490-mRNA-1
chr8_1 exon 1111239 1111359 1111239 ID=Msa1171490-mRNA-1:exon:375;Parent=Msa1171490-mRNA-1
chr8_1 exon 1111517 1111602 1111517 ID=Msa1171490-mRNA-1:exon:376;Parent=Msa1171490-mRNA-1
chr8_1 exon 1111795 1112039 1111795 ID=Msa1171490-mRNA-1:exon:377;Parent=Msa1171490-mRNA-1
chr8_1 exon 1114013 1114099 1114013 ID=Msa1171490-mRNA-1:exon:378;Parent=Msa1171490-mRNA-1
chr8_1 exon 1114224 1114323 1114224 ID=Msa1171490-mRNA-1:exon:379;Parent=Msa1171490-mRNA-1
chr8_1 exon 1114736 1114943 1114736 ID=Msa1171490-mRNA-1:exon:380;Parent=Msa1171490-mRNA-1
chr8_1 exon 1115028 1115151 1115028 ID=Msa1171490-mRNA-1:exon:381;Parent=Msa1171490-mRNA-1
chr8_1 exon 1115947 1116004 1115947 ID=Msa1171490-mRNA-1:exon:382;Parent=Msa1171490-mRNA-1
chr8_1 exon 1116265 1116567 1116265 ID=Msa1171490-mRNA-1:exon:383;Parent=Msa1171490-mRNA-1
chr8_1 five_prime_UTR 1109039 1109289 1109039 ID=Msa1171490-mRNA-1:five_prime_utr;Parent=Msa1171490-mRNA-1
chr8_1 CDS 1109290 1111131 1109290 ID=Msa1171490-mRNA-1:cds;Parent=Msa1171490-mRNA-1
chr8_1 CDS 1111239 1111359 1111239 ID=Msa1171490-mRNA-1:cds;Parent=Msa1171490-mRNA-1
chr8_1 CDS 1111517 1111602 1111517 ID=Msa1171490-mRNA-1:cds;Parent=Msa1171490-mRNA-1
chr8_1 CDS 1111795 1112039 1111795 ID=Msa1171490-mRNA-1:cds;Parent=Msa1171490-mRNA-1
chr8_1 CDS 1114013 1114099 1114013 ID=Msa1171490-mRNA-1:cds;Parent=Msa1171490-mRNA-1
chr8_1 CDS 1114224 1114323 1114224 ID=Msa1171490-mRNA-1:cds;Parent=Msa1171490-mRNA-1
chr8_1 CDS 1114736 1114943 1114736 ID=Msa1171490-mRNA-1:cds;Parent=Msa1171490-mRNA-1
chr8_1 CDS 1115028 1115151 1115028 ID=Msa1171490-mRNA-1:cds;Parent=Msa1171490-mRNA-1
chr8_1 CDS 1115947 1116004 1115947 ID=Msa1171490-mRNA-1:cds;Parent=Msa1171490-mRNA-1
chr8_1 CDS 1116265 1116417 1116265 ID=Msa1171490-mRNA-1:cds;Parent=Msa1171490-mRNA-1
chr8_1 three_prime_UTR 1116418 1116567 1116418 ID=Msa1171490-mRNA-1:three_prime_utr;Parent=Msa1171490-mRNA-1
Gene Sequence

>Msa1171490

ATGGAGGAGAGGACTGTGTTTTTCCCTGATTTGGGTGATGAAATGAAGGTCGGAATTCAGGAAATGCGGATTACTCAGGATTGGGATGAAGTTACGGAGAGATGGGAGCGACGAGGGAAATGGTTGCTTTTTGAATTGATTGAGGAGTTGTATCTTCCGGTATCGGTAAGGCAAATTTGGTATGATGTGCGACAAAAAAAGGAATTTGCCGTGATTGGTGAATGGACATTGAATGAGAAGAAGGATTTGTGGAGACACTTGATAATGGAGGTAGTTGGTGACTACTTGGCTGTTACAGTAAAGGAAGTTTTCTCGGCCTTGAAACTTCCGGAGATGGAATCAGGTGAATTATTATCTGAAAAGGAAGAGTTTGAGCAGAAAGAACTTGTTGTTCCTCCAGCTGAAAAGGACTTGCCTAAGTTTCAAAATGAAGTTTCATGCAACGGTGCTGGTGAAGCGGTTGCCATCAATTCTGAGAAAAATGAACACAGATTGTCAACTGATTTAAAGTCAAATTGTTCGTGGGAACGTGTAATATTTTCTGAAACTGAATACTGTCCCGATGCTGTTAAGCAATATGTGCTTGCTTCTGACTCCAAGGCAACTATGGCATCTTTGAAGGAAAAAGTATGGAAACATCTTGCATATCTTGGATGGGAAATTGACATTGACCTGGGTAGTAAAAAATACAGGTACAAGCCACCCAATGGAATCCATTGCAATAATAAAGTTTACTACTCACTTATTCTACTTTGTAAAGCTGAATCCATGATGAACTCTTCTCCGTCCGAAAATGGTCTTGATATAAGGCATCCTGCCGGTGACTGTCATGTTCCAAATGTGCCTCTTAGTCCATCTGAAAAGATTCAGAACCGAGTATCTCCTCTAGTTGTGAGGCTTCCATCTGTTGCAGTGGCAGATGAACAAGCTTATTGTCCTCAAGCCATTGTGGAATACCACAAACATGCACTCAAGAAGACCTGCAATCGGGCATATAAAAGGAAACTTATTTCAAAAGTACGAAATCATCTGAAAGCAGAAGGATGGATTTTAATTGATCCACCTCCAAATAATAGAAGAAGAGGTGTTTTATACATTTCTCCACTGAAACAGAAATTCTTCTCATTGAATACAGTATGCAGTTTCTTACTTGAAGAAAGTATTCAGAAATCGACTATTTCTGGCATGCAACCTTTAAATACCTTGACCATTCATGAGGAAAATGTTGATCAGGTATTGAGTGATGATTTATCAAGTAGAGACAGTGTTGCTGCGAATAAATCAAGTGCAAATCGGAAGCGAAAACGCTTGAGGAATTCAGATGGCAGCCTGCCAAAGCGCCGAAGCGATGAATCAACTCTAAGGGTACTGAGATCAAATGAAAGGGTGCCAAAGGCGTCTTCCTCTTGCCTTTCACATCATAAACCTTTAAATGTTCTGTCTTGGTTGATAGACAGCAACATGTTGTTACCAAGGTCTAAGGTTTTTTGTCGAGCAAAACGTGGGCACCGTACTGTGCTTTCTGGGCGAATAACTCATGAAGGCATCAAGTGTAACTGTTGTTCAAGAATATACAGTCTTGTTTCCTTCGAATTTCATGCTACTGGCAGTAATACCATCAGACCAAGTGCCAATATCTTTCTGGCCGATGGTAGATCGCTCTTATCTTGCCAGATACAAATAATGCAAGATCACAAGTCTAAGGAGGCTATGATAAAACCACACAGTCATTTGCGTCAAGGTGAAAACGACTACATTTGTTCCGTTTGCCGCTTTGGAGGCGAACTTCTTTTGTGTGATCAATGTCCGTCTTCATATCATAAGACGTGTCTTGGTCTGGAGGATCTCCCTGATGGTGAATGGTTTTGTCCATCGTGTCGATGCGGGATTTGTAGCCAAAGCAAATTCAACGGGGGTGGTGAGGATGAGCATTTCCTTACATGCATTCAGTGTGAACATAAATATCATGTTGCGTGCCTGAAAAGTAGAGATACCAGTAAATCCGGAAGTTATGTGGAAAGCCGGTTCTGCGGAAAAGACTGTGAAAAGTTATATACAGCCCTTCAAAGTCTGTTAGGACAGCCAGTTTCAGTGGGTGCGGACAATCTAACATGGACATTAGTGAAGTGTGCCGACTCTGAGAGTTGTGAACTTGATAATAGTAAAAGTGGATTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTCTTTCATTGATGCATGAATGTTTCGAGCCCCTAAAGGAATCCTCTTCTTGCAGAGATCTGATGGAAAATGTTTTATTCAGCCGATGGTCAGAACTTAATCGAATGAATTTCCAGGGTTTCTATTCCGTACTTCTGGAGAGAAATGAAGATCTGGTCAGTGTAGCAACTATTAGGGTCCTTGGAGATAAGGTAGCTGAAGTACCTCTTGTTGGTACCAGATTTCAGTATCGTCGTCATGGAATGTGTCGCATATTAATGGATGAATTGGAGAAGAAGCTCACGCAATTAGGACTGGAACGTCTCGTTTTACCTGCTGTTCCCACTGTGGTAGATACATGGACCGGCGCTTTTGGATTTTCAAAGATGCCAAACTTTGAAAGATCACAATTTCTAAACTATACTTTCCTAGATTTTCCGGGTACCATCATGTGCCAGAAGTTTTTAGCAAATATTCCCTCTCCAAATTCGGTTTTGCCAACTGAGTTCCAACGAAAACAAGATGCTATCTCCGGAAGCAGTAGTGCTAGTAATAAGTCTCCAGTTTCTGAAGTTTACCAAGCAGAAGAGATAGACAAAAGAGAATCGTTGGATCAACAAATGATGGATACTTCTGAAGGCGATAATGATAATCTTGGCAGTGCTGTTATCGACTGTGTCACCATGGCGGAGCAACCAATTCCTGTGGACCAACAACATTGCCAGAATGAAACCACTCAAAAATGCCAGAATGAAACCACTCAAAAGTGCTCTCTTGTAAAGTGGAGTGGACTGGTGTACTCTAGACGAAGGAAGGCGAAAGGGGAACATGAAGCGTAG
Protein sequence

>Msa1171490

MEERTVFFPDLGDEMKVGIQEMRITQDWDEVTERWERRGKWLLFELIEELYLPVSVRQIWYDVRQKKEFAVIGEWTLNEKKDLWRHLIMEVVGDYLAVTVKEVFSALKLPEMESGELLSEKEEFEQKELVVPPAEKDLPKFQNEVSCNGAGEAVAINSEKNEHRLSTDLKSNCSWERVIFSETEYCPDAVKQYVLASDSKATMASLKEKVWKHLAYLGWEIDIDLGSKKYRYKPPNGIHCNNKVYYSLILLCKAESMMNSSPSENGLDIRHPAGDCHVPNVPLSPSEKIQNRVSPLVVRLPSVAVADEQAYCPQAIVEYHKHALKKTCNRAYKRKLISKVRNHLKAEGWILIDPPPNNRRRGVLYISPLKQKFFSLNTVCSFLLEESIQKSTISGMQPLNTLTIHEENVDQVLSDDLSSRDSVAANKSSANRKRKRLRNSDGSLPKRRSDESTLRVLRSNERVPKASSSCLSHHKPLNVLSWLIDSNMLLPRSKVFCRAKRGHRTVLSGRITHEGIKCNCCSRIYSLVSFEFHATGSNTIRPSANIFLADGRSLLSCQIQIMQDHKSKEAMIKPHSHLRQGENDYICSVCRFGGELLLCDQCPSSYHKTCLGLEDLPDGEWFCPSCRCGICSQSKFNGGGEDEHFLTCIQCEHKYHVACLKSRDTSKSGSYVESRFCGKDCEKLYTALQSLLGQPVSVGADNLTWTLVKCADSESCELDNSKSGLLAESYSKLNVALSLMHECFEPLKESSSCRDLMENVLFSRWSELNRMNFQGFYSVLLERNEDLVSVATIRVLGDKVAEVPLVGTRFQYRRHGMCRILMDELEKKLTQLGLERLVLPAVPTVVDTWTGAFGFSKMPNFERSQFLNYTFLDFPGTIMCQKFLANIPSPNSVLPTEFQRKQDAISGSSSASNKSPVSEVYQAEEIDKRESLDQQMMDTSEGDNDNLGSAVIDCVTMAEQPIPVDQQHCQNETTQKCQNETTQKCSLVKWSGLVYSRRRKAKGEHEA*