AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0413490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413490 MtrunA17_Chr1g0202341 74.260 676 172 1 4 679 12 685 0.0 1059
Msa0413490 MtrunA17_Chr5g0448761 43.079 643 346 6 36 666 53 687 0.0 547
Msa0413490 MtrunA17_Chr1g0207551 35.588 621 387 5 41 660 32 640 7.15e-131 408
Msa0413490 MtrunA17_Chr5g0440451 34.992 643 380 9 42 666 42 664 4.14e-130 409
Msa0413490 MtrunA17_Chr5g0441581 35.660 659 387 13 20 664 2 637 3.26e-127 395
Msa0413490 MtrunA17_Chr5g0448511 40.086 464 270 3 206 666 1 459 5.46e-127 390
Msa0413490 MtrunA17_Chr2g0296781 33.624 687 397 11 47 710 1 651 4.72e-125 390
Msa0413490 MtrunA17_Chr3g0080351 33.965 633 371 7 41 659 74 673 8.39e-120 380
Msa0413490 MtrunA17_Chr2g0329031 33.599 628 394 10 42 667 13 619 6.45e-119 375
Msa0413490 MtrunA17_Chr3g0118611 37.452 526 305 6 218 724 118 638 9.05e-117 370
Msa0413490 MtrunA17_Chr2g0287061 35.285 632 345 11 41 663 181 757 4.31e-115 367
Msa0413490 MtrunA17_Chr2g0287061 28.161 174 92 5 17 178 9 161 1.31e-15 81.3
Msa0413490 MtrunA17_Chr2g0324011 33.916 572 366 6 37 603 4 568 1.37e-112 353
Msa0413490 MtrunA17_Chr2g0291581 32.725 657 399 12 23 663 50 679 5.65e-112 355
Msa0413490 MtrunA17_Chr8g0363841 31.921 661 411 11 31 664 3 651 1.97e-110 350
Msa0413490 MtrunA17_Chr6g0477261 35.870 552 335 8 165 710 2 540 7.81e-110 348
Msa0413490 MtrunA17_Chr2g0287651 32.740 562 369 4 47 605 79 634 2.15e-104 340
Msa0413490 MtrunA17_Chr1g0196541 34.342 562 346 10 47 597 1 550 4.23e-104 335
Msa0413490 MtrunA17_Chr1g0203721 31.200 625 421 6 46 666 66 685 4.55e-104 339
Msa0413490 MtrunA17_Chr1g0198761 30.055 732 471 12 44 759 48 754 1.48e-102 332
Msa0413490 MtrunA17_Chr6g0458391 33.216 569 356 7 37 603 219 765 1.90e-99 324
Msa0413490 MtrunA17_Chr6g0458391 27.174 184 123 3 23 198 71 251 2.90e-11 67.0
Msa0413490 MtrunA17_Chr3g0082121 32.381 630 400 10 22 645 22 631 1.27e-98 320
Msa0413490 MtrunA17_Chr2g0291591 33.465 508 328 6 42 547 63 562 1.98e-95 308
Msa0413490 MtrunA17_Chr1g0203051 29.813 587 398 6 11 591 44 622 2.95e-91 299
Msa0413490 MtrunA17_Chr2g0294841 26.731 722 494 13 37 738 39 745 1.71e-81 276
Msa0413490 MtrunA17_Chr2g0276841 28.797 632 419 14 43 663 70 681 1.96e-78 266
Msa0413490 MtrunA17_Chr2g0290391 29.123 673 437 16 8 663 17 666 1.12e-74 256
Msa0413490 MtrunA17_Chr1g0164591 37.171 304 182 2 134 437 14 308 3.64e-67 225
Msa0413490 MtrunA17_Chr5g0431001 34.038 426 266 8 43 456 61 483 8.90e-65 224
Msa0413490 MtrunA17_Chr7g0258861 37.113 291 178 4 35 322 2 290 1.07e-60 207
Msa0413490 MtrunA17_Chr3g0077241 75.000 92 19 2 6 96 1 89 3.08e-38 138
Msa0413490 MtrunA17_Chr4g0052331 52.632 95 45 0 1 95 1 95 6.08e-27 105
Msa0413490 MtrunA17_Chr2g0329361 37.086 151 83 3 5 148 22 167 2.41e-25 105
Msa0413490 MtrunA17_Chr2g0308841 27.397 219 152 3 383 597 6 221 1.03e-22 98.6
Msa0413490 MtrunA17_Chr2g0329421 30.921 152 82 3 42 173 26 174 3.85e-20 89.7
Msa0413490 MtrunA17_Chr1g0149131 33.636 110 73 0 323 432 1 110 4.50e-20 86.7
Msa0413490 MtrunA17_Chr4g0033611 30.189 159 87 3 36 173 69 224 5.71e-19 87.4
Msa0413490 MtrunA17_Chr3g0078041 36.842 114 67 4 42 152 49 160 8.61e-17 80.5
Msa0413490 MtrunA17_Chr7g0233911 37.383 107 61 3 42 145 33 136 8.25e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413490 AT4G38180.1 41.272 676 372 9 2 659 21 689 3.32e-177 528
Msa0413490 AT4G15090.1 33.896 652 414 7 37 681 45 686 4.39e-135 420
Msa0413490 AT4G15090.5 33.896 652 414 7 37 681 45 686 4.39e-135 420
Msa0413490 AT4G15090.3 33.896 652 414 7 37 681 45 686 4.39e-135 420
Msa0413490 AT4G15090.2 33.896 652 414 7 37 681 45 686 4.39e-135 420
Msa0413490 AT4G15090.4 33.896 652 414 7 37 681 45 686 4.39e-135 420
Msa0413490 AT3G06250.2 34.913 633 340 11 42 663 189 760 8.34e-127 396
Msa0413490 AT3G06250.2 34.906 106 53 2 41 145 26 116 1.48e-14 78.2
Msa0413490 AT3G06250.1 34.913 633 340 11 42 663 189 760 8.34e-127 396
Msa0413490 AT3G06250.1 34.906 106 53 2 41 145 26 116 1.48e-14 78.2
Msa0413490 AT3G06250.3 34.913 633 340 11 42 663 189 760 8.34e-127 396
Msa0413490 AT3G06250.3 34.906 106 53 2 41 145 26 116 1.48e-14 78.2
Msa0413490 AT2G27110.2 36.160 625 359 10 42 663 48 635 2.22e-125 395
Msa0413490 AT2G27110.1 36.160 625 359 10 42 663 48 635 2.22e-125 395
Msa0413490 AT5G18960.2 34.961 635 340 11 42 663 210 784 1.46e-124 391
Msa0413490 AT5G18960.2 29.688 128 74 2 41 167 41 153 4.30e-14 76.6
Msa0413490 AT5G18960.1 34.961 635 340 11 42 663 210 784 1.46e-124 391
Msa0413490 AT5G18960.1 29.688 128 74 2 41 167 41 153 4.30e-14 76.6
Msa0413490 AT2G27110.3 39.686 446 263 2 218 663 51 490 4.45e-114 361
Msa0413490 AT3G22170.2 30.709 635 395 6 39 660 66 668 1.03e-110 356
Msa0413490 AT3G22170.1 30.709 635 395 6 39 660 66 668 1.03e-110 356
Msa0413490 AT1G76320.3 31.877 618 398 8 47 662 1 597 1.20e-108 346
Msa0413490 AT1G76320.2 31.877 618 398 8 47 662 1 597 4.32e-108 346
Msa0413490 AT1G76320.1 31.877 618 398 8 47 662 1 597 5.37e-108 346
Msa0413490 AT1G76320.4 31.877 618 398 8 47 662 1 597 5.37e-108 346
Msa0413490 AT4G38170.1 35.833 480 294 6 222 698 21 489 2.52e-104 331
Msa0413490 AT2G32250.5 31.360 625 372 7 46 667 41 611 4.03e-100 326
Msa0413490 AT2G32250.6 31.360 625 372 7 46 667 41 611 6.28e-100 327
Msa0413490 AT2G32250.1 31.360 625 372 7 46 667 41 611 6.28e-100 327
Msa0413490 AT2G32250.3 31.360 625 372 7 46 667 41 611 6.28e-100 327
Msa0413490 AT2G32250.2 31.360 625 372 7 46 667 41 611 6.60e-100 327
Msa0413490 AT2G32250.4 31.360 625 372 7 46 667 41 611 6.60e-100 327
Msa0413490 AT2G32250.8 31.250 624 372 7 47 667 1 570 3.81e-99 323
Msa0413490 AT2G32250.7 31.250 624 372 7 47 667 1 570 4.25e-99 323
Msa0413490 AT1G52520.1 29.099 677 422 12 11 667 61 699 6.65e-99 321
Msa0413490 AT4G19990.5 30.468 663 397 12 41 684 19 636 1.60e-96 316
Msa0413490 AT4G19990.3 30.468 663 397 12 41 684 19 636 1.84e-96 316
Msa0413490 AT4G19990.4 30.468 663 397 12 41 684 19 636 1.84e-96 316
Msa0413490 AT4G19990.7 30.468 663 397 12 41 684 33 650 2.67e-96 316
Msa0413490 AT4G19990.6 30.468 663 397 12 41 684 19 636 3.00e-96 316
Msa0413490 AT4G19990.2 30.468 663 397 12 41 684 19 636 3.00e-96 316
Msa0413490 AT4G19990.1 31.542 577 344 10 115 684 47 579 2.44e-89 296
Msa0413490 AT1G80010.1 28.656 677 443 16 12 672 73 725 4.20e-89 296
Msa0413490 AT5G28530.1 28.728 637 415 14 43 657 55 674 1.14e-75 259
Msa0413490 AT1G10240.2 28.637 653 429 16 27 658 25 661 7.29e-75 256
Msa0413490 AT1G10240.1 28.637 653 429 16 27 658 25 661 7.29e-75 256
Msa0413490 AT5G28530.3 28.414 637 413 14 43 657 55 670 5.76e-74 254
Msa0413490 AT5G28530.2 28.414 637 413 14 43 657 55 670 5.76e-74 254
Msa0413490 AT5G28530.4 25.197 635 377 18 43 657 55 611 4.47e-47 177
Msa0413490 AT5G28530.5 24.882 635 375 18 43 657 55 607 1.76e-45 173
Msa0413490 AT3G59470.3 39.450 109 62 2 42 149 69 174 1.09e-20 92.8
Msa0413490 AT3G59470.1 39.450 109 62 2 42 149 69 174 1.09e-20 92.8
Msa0413490 AT3G59470.2 39.450 109 62 2 42 149 81 186 1.43e-20 92.8
Msa0413490 AT3G07500.1 35.938 128 75 4 41 165 31 154 7.30e-16 77.8
Msa0413490 AT2G43280.1 32.308 130 83 4 27 153 6 133 1.36e-15 76.6
Msa0413490 AT4G12850.2 36.190 105 61 2 42 145 10 109 2.05e-15 74.3
Msa0413490 AT4G12850.4 36.190 105 61 2 42 145 10 109 2.53e-15 73.9
Msa0413490 AT4G12850.1 36.190 105 61 2 42 145 10 109 2.75e-15 75.1
Msa0413490 AT2G43280.2 33.333 99 61 4 58 153 2 98 2.41e-11 63.5

Find 143 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTCTGCGATAAATATT+TGG 0.081853 3_2:-57988876 None:intergenic
AGAATGGCTTACAAATATTT+TGG 0.184037 3_2:+57988091 Msa0413490:CDS
TTGGCAAAATTATCCCTTAT+TGG 0.203695 3_2:-57989859 None:intergenic
GATTTCTCTGATGTGATTCT+AGG 0.204971 3_2:+57989896 Msa0413490:exon
TGTAATTCTGGCGTGATTTC+AGG 0.211278 3_2:+57989926 Msa0413490:three_prime_UTR
TTATACACCTTTACTATAAA+TGG 0.221327 3_2:-57990286 None:intergenic
TGTTGTTTGCTGAATGTTAT+TGG 0.222041 3_2:+57990210 Msa0413490:three_prime_UTR
TTCATTATTTAATAGTATTA+TGG 0.222727 3_2:+57989191 Msa0413490:CDS
GTAAATTAGCAAATTGCTTT+TGG 0.235893 3_2:+57988053 Msa0413490:CDS
CTAGGCTTTGGATGTAATTC+TGG 0.239700 3_2:+57989914 Msa0413490:three_prime_UTR
ATTGATGTGCTTCATGATTC+TGG 0.246659 3_2:+57987818 Msa0413490:CDS
CATTCCTTCAAAGGGCTCTA+AGG 0.261818 3_2:-57987435 None:intergenic
TATTCATACTTTCACTCCTT+TGG 0.266644 3_2:-57988633 None:intergenic
ATTCATACTTTCACTCCTTT+GGG 0.296462 3_2:-57988632 None:intergenic
CACTATGTTCATGATAGATT+TGG 0.302307 3_2:-57988420 None:intergenic
AAAGTGCGTGGACGACCTTT+AGG 0.302776 3_2:-57989420 None:intergenic
TCTGGCGTGATTTCAGGTTT+TGG 0.303109 3_2:+57989932 Msa0413490:three_prime_UTR
TTTATACAAGAAAAGTGTTT+AGG 0.307581 3_2:+57988827 Msa0413490:CDS
ATCCTTCCGTTTCTTATTCA+AGG 0.313636 3_2:+57986775 Msa0413490:five_prime_UTR
GTAAGGTACGCCAAGAAAAT+AGG 0.318570 3_2:+57987494 Msa0413490:CDS
GAAGATGTTGTGAACTTCTT+GGG 0.326122 3_2:-57987757 None:intergenic
TGAAAAGTCACATGATAGTT+AGG 0.326132 3_2:-57988955 None:intergenic
TCTGATGTGATTCTAGGCTT+TGG 0.327651 3_2:+57989902 Msa0413490:exon
CGAAGATGTTGTGAACTTCT+TGG 0.330323 3_2:-57987758 None:intergenic
CTGATGACTTTGATTCTGAT+TGG 0.333619 3_2:+57988488 Msa0413490:CDS
AATAATTAGTAACATCTTGT+TGG 0.335314 3_2:-57987910 None:intergenic
TTTCTCTGCGATAAATATTT+GGG 0.341189 3_2:-57988875 None:intergenic
TGGAGGATCACACAAGTTTA+TGG 0.352054 3_2:-57989388 None:intergenic
TTATCCCTTATTGGCAAAAC+AGG 0.352844 3_2:-57989850 None:intergenic
AAGTGCGTGGACGACCTTTA+GGG 0.355019 3_2:-57989419 None:intergenic
TAGGTATTTATTTGTTAAGT+AGG 0.356351 3_2:-57988137 None:intergenic
ATGCCCTTTGTTCCATTCAC+TGG 0.364662 3_2:+57988160 Msa0413490:CDS
AAATCCACCACCTTTGGCTT+TGG 0.364975 3_2:-57989878 None:intergenic
TTTACGAATGAAAGGCAGTT+TGG 0.374955 3_2:+57989440 Msa0413490:CDS
TATTTATTTGTTAAGTAGGT+TGG 0.381728 3_2:-57988133 None:intergenic
GATTTATCAAACTCTTCATT+TGG 0.382353 3_2:-57989327 None:intergenic
TGATGACTTTGATTCTGATT+GGG 0.384063 3_2:+57988489 Msa0413490:CDS
TTGTCGCATGTTTGAGTTTG+TGG 0.384532 3_2:+57989005 Msa0413490:CDS
TGTATTAAATGTATTCATAA+AGG 0.391275 3_2:+57989044 Msa0413490:CDS
TACCTCTGGTGCGGCTGTGC+GGG 0.391811 3_2:+57990012 Msa0413490:three_prime_UTR
AATTGTCAGTTGAAGAATCC+TGG 0.396913 3_2:+57987998 Msa0413490:CDS
TCTTAGCATTTATGGTCCTT+CGG 0.397185 3_2:-57989104 None:intergenic
AGTCATCAGTAGTGATAGTT+TGG 0.400979 3_2:-57988474 None:intergenic
TCAGAGAAATCCACCACCTT+TGG 0.409488 3_2:-57989884 None:intergenic
GGGAAAATAGTACATGATTA+TGG 0.411615 3_2:-57987736 None:intergenic
AATCACAAAACTTGATCAAT+TGG 0.412422 3_2:+57989293 Msa0413490:CDS
TGAATGGAACAAAGGGCATT+AGG 0.418217 3_2:-57988156 None:intergenic
TTGTGAAAATGAAGGAGAAC+AGG 0.419556 3_2:-57986704 None:intergenic
TTGTTTGGTTGCTACGTACT+TGG 0.423904 3_2:+57988251 Msa0413490:CDS
CGCACCAGAGGTACAAAAGC+TGG 0.431891 3_2:-57990002 None:intergenic
GCAACAGAGAGTTGCAGATT+CGG 0.435446 3_2:-57986752 None:intergenic
TGCATCAATTGAAGATGTAA+AGG 0.436857 3_2:+57987463 Msa0413490:CDS
GTGCTTCATGATTCTGGTAT+AGG 0.438869 3_2:+57987824 Msa0413490:CDS
ACTTTCACTCCTTTGGGTGG+TGG 0.440297 3_2:-57988626 None:intergenic
GGCTCTAAGGGGAGCTCTGA+TGG 0.445219 3_2:-57987422 None:intergenic
TACATCATCTGAGCCATTCA+TGG 0.452459 3_2:-57987357 None:intergenic
CATGAACATACCACCATGAA+TGG 0.455856 3_2:+57987344 Msa0413490:CDS
CTCCCCTTAGAGCCCTTTGA+AGG 0.456460 3_2:+57987431 Msa0413490:CDS
GGTTGATTCAAGGTCTAGAA+TGG 0.460592 3_2:+57988075 Msa0413490:CDS
TGTAGTTATTGCAACGGAAA+AGG 0.460720 3_2:+57989489 Msa0413490:CDS
ATATTGCAATTCAAGCTTTG+CGG 0.469966 3_2:+57989265 Msa0413490:CDS
CTTAGAGCCCTTTGAAGGAA+TGG 0.476103 3_2:+57987436 Msa0413490:CDS
CATGTACGTAACAGGATTGT+GGG 0.480477 3_2:+57987281 Msa0413490:intron
TTTGCCAAAGCCAAAGGTGG+TGG 0.482208 3_2:+57989874 Msa0413490:CDS
AGAACGAATGGTATTGTGAT+TGG 0.484146 3_2:+57987551 Msa0413490:CDS
TGCAAACTCCATTCCTTCAA+AGG 0.485592 3_2:-57987444 None:intergenic
TGTCGCATGTTTGAGTTTGT+GGG 0.487042 3_2:+57989006 Msa0413490:CDS
ATTCCTTCAAAGGGCTCTAA+GGG 0.488264 3_2:-57987434 None:intergenic
TTTCTAGGAGGGGATCTGTT+CGG 0.498304 3_2:+57990063 Msa0413490:three_prime_UTR
ACGAGTTGCAAGATAACAAA+TGG 0.498356 3_2:+57988530 Msa0413490:CDS
ATTGTCAGTTGAAGAATCCT+GGG 0.500058 3_2:+57987999 Msa0413490:CDS
TAGATTTGGTTCAAGTACTC+TGG 0.502715 3_2:-57988406 None:intergenic
GTACCTCTGGTGCGGCTGTG+CGG 0.502898 3_2:+57990011 Msa0413490:three_prime_UTR
ATCAGTTGTAGTTATTGCAA+CGG 0.505066 3_2:+57989483 Msa0413490:CDS
TTTGAAGCCTCTTCTTCCAT+GGG 0.505212 3_2:-57988802 None:intergenic
TCAAGAGATTCTTTGTTCAA+AGG 0.507548 3_2:+57987574 Msa0413490:CDS
GCAAACTCCATTCCTTCAAA+GGG 0.507732 3_2:-57987443 None:intergenic
TGTATCACAAACTTTCTCAA+TGG 0.510087 3_2:-57988688 None:intergenic
CAATAATGATGATTCACCTC+TGG 0.513933 3_2:-57988358 None:intergenic
AAACTCTGACGTACATAAGA+AGG 0.521777 3_2:-57988589 None:intergenic
CCTCCACGTGCGGTCCCTAA+AGG 0.522617 3_2:+57989405 Msa0413490:CDS
TCCATACCTTGAATAAGAAA+CGG 0.525272 3_2:-57986781 None:intergenic
CATACTTTCACTCCTTTGGG+TGG 0.526942 3_2:-57988629 None:intergenic
AGTGGTGGTGTTGATAATGT+TGG 0.527691 3_2:+57987881 Msa0413490:CDS
TCTGCGTACTTTATATCCCA+TGG 0.529545 3_2:+57988786 Msa0413490:CDS
GATGACTTTGATTCTGATTG+GGG 0.531464 3_2:+57988490 Msa0413490:CDS
CTCAATATGTTCTAAGCCGA+AGG 0.531634 3_2:+57989088 Msa0413490:CDS
ACTCCAGTGAATGGAACAAA+GGG 0.535906 3_2:-57988163 None:intergenic
AATTTCATGAATCTTGTATG+TGG 0.536832 3_2:-57988920 None:intergenic
ACGTACTTGGTTAGAAGCAA+TGG 0.537041 3_2:+57988264 Msa0413490:CDS
TCTCTTGAACTATCTGAAAG+AGG 0.540310 3_2:+57989219 Msa0413490:CDS
AGAGATTCTTTGTTCAAAGG+AGG 0.541828 3_2:+57987577 Msa0413490:CDS
TTTATATCCCATGGAAGAAG+AGG 0.541904 3_2:+57988795 Msa0413490:CDS
TGAATCATCATTATTGTATG+TGG 0.542391 3_2:+57988365 Msa0413490:CDS
TTGGACATCTACGTTTGTTG+TGG 0.543214 3_2:-57989512 None:intergenic
GAGATTCTTTGTTCAAAGGA+GGG 0.548544 3_2:+57987578 Msa0413490:CDS
TATTTCTAATGCAGTTGCAA+AGG 0.550472 3_2:+57988330 Msa0413490:CDS
CGGCTTAGAACATATTGAGA+AGG 0.552806 3_2:-57989084 None:intergenic
ATTATCAACACCACCACTCT+CGG 0.553163 3_2:-57987876 None:intergenic
ACATGTACGTAACAGGATTG+TGG 0.553239 3_2:+57987280 Msa0413490:intron
GTCTGGTCATCAGAGACTTT+AGG 0.557356 3_2:-57989366 None:intergenic
GATCACACAAGTTTATGGTC+TGG 0.557810 3_2:-57989383 None:intergenic
AAGATGTTGTGAACTTCTTG+GGG 0.560401 3_2:-57987756 None:intergenic
TTAAAGTAAAATGTTACAAG+AGG 0.562016 3_2:-57990177 None:intergenic
GGCTTAGAACATATTGAGAA+GGG 0.562660 3_2:-57989083 None:intergenic
TGCAATTCAAGCTTTGCGGA+AGG 0.564681 3_2:+57989269 Msa0413490:CDS
GCACCAGAGGTACAAAAGCT+GGG 0.568721 3_2:-57990001 None:intergenic
GTCCAAGTTTAAAACATGGA+AGG 0.582831 3_2:+57989529 Msa0413490:CDS
AACTCCAGTGAATGGAACAA+AGG 0.585483 3_2:-57988164 None:intergenic
TGATGATTAACTCCAGTGAA+TGG 0.587906 3_2:-57988172 None:intergenic
TTAAAGTACACGATCAAACA+AGG 0.591318 3_2:+57987642 Msa0413490:CDS
GTTACTAAATCAAGAACGAA+TGG 0.594117 3_2:+57987539 Msa0413490:CDS
ATGTAAAGGATTACTACGTA+AGG 0.595028 3_2:+57987477 Msa0413490:CDS
GCATTTCAAATGGACGCAGA+AGG 0.597955 3_2:+57988031 Msa0413490:CDS
CCACGCACTTTACGAATGAA+AGG 0.600807 3_2:+57989432 Msa0413490:CDS
TCTAAGGGGAGCTCTGATGG+CGG 0.601475 3_2:-57987419 None:intergenic
GCAATTGAAGACCTCGAGGA+AGG 0.603885 3_2:+57989147 Msa0413490:CDS
CCTTTCATTCGTAAAGTGCG+TGG 0.604290 3_2:-57989432 None:intergenic
GGATATAAAGTACGCAGAAG+TGG 0.606925 3_2:-57988781 None:intergenic
CAGAGCGGTTGTGAAAATGA+AGG 0.616006 3_2:-57986712 None:intergenic
GAGAGAAGAATGTCAAGACA+AGG 0.616684 3_2:+57988749 Msa0413490:CDS
GAACAGGGTAACTGATGTTG+AGG 0.619611 3_2:-57986688 None:intergenic
CTTTGTTTCTGCCTTCCTCG+AGG 0.619887 3_2:-57989158 None:intergenic
TACCTTGAATAAGAAACGGA+AGG 0.622637 3_2:-57986777 None:intergenic
CGACCTTTAGGGACCGCACG+TGG 0.624526 3_2:-57989408 None:intergenic
GTTTGTGATACAGTATGAGA+AGG 0.624921 3_2:+57988699 Msa0413490:CDS
GACCCGCACAGCCGCACCAG+AGG 0.625833 3_2:-57990014 None:intergenic
GTACACGATCAAACAAGGGT+AGG 0.637469 3_2:+57987647 Msa0413490:CDS
CTGGAATGTCCACCACCCAA+AGG 0.639739 3_2:+57988617 Msa0413490:CDS
AGATGTCCAAGTTTAAAACA+TGG 0.643966 3_2:+57989525 Msa0413490:CDS
TCAGTGTTATGTACCGAGAG+TGG 0.652006 3_2:+57987863 Msa0413490:CDS
ACTTGGTTAGAAGCAATGGA+TGG 0.652582 3_2:+57988268 Msa0413490:CDS
TCTTGATGCACGTTATAACA+AGG 0.672143 3_2:+57988723 Msa0413490:CDS
TTCCTTCAAAGGGCTCTAAG+GGG 0.687755 3_2:-57987433 None:intergenic
AATAGATGGAAATTCACACC+AGG 0.694517 3_2:-57989962 None:intergenic
TGTGAAAATGAAGGAGAACA+GGG 0.696875 3_2:-57986703 None:intergenic
CCTTTAGGGACCGCACGTGG+AGG 0.703909 3_2:-57989405 None:intergenic
ATCATCTGAGCCATTCATGG+TGG 0.705037 3_2:-57987354 None:intergenic
AATTGCAATTGAAGACCTCG+AGG 0.709068 3_2:+57989143 Msa0413490:CDS
CTTGTGTGATCCTCCACGTG+CGG 0.710705 3_2:+57989395 Msa0413490:CDS
TAAAGTACACGATCAAACAA+GGG 0.712268 3_2:+57987643 Msa0413490:CDS
GTGTTATGTACCGAGAGTGG+TGG 0.716148 3_2:+57987866 Msa0413490:CDS
GTCGAGAATCAAGTACAGAG+CGG 0.751791 3_2:-57986727 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATATATAATTAAAAAAG+TGG - chr3_2:57987239-57987258 None:intergenic 10.0%
!!! AAGTATGAATAAATTTTTTA+AGG + chr3_2:57988645-57988664 Msa0413490:CDS 10.0%
!!! AGTATGAATAAATTTTTTAA+GGG + chr3_2:57988646-57988665 Msa0413490:CDS 10.0%
!! TTCATTATTTAATAGTATTA+TGG + chr3_2:57989191-57989210 Msa0413490:CDS 10.0%
!!! TAACATTTTACTTTAATATA+AGG + chr3_2:57990184-57990203 Msa0413490:three_prime_UTR 10.0%
!! ACTATAATATGCTATTATAA+AGG - chr3_2:57987185-57987204 None:intergenic 15.0%
!!! TTTTAGATCCAAAAAATATT+TGG + chr3_2:57987601-57987620 Msa0413490:CDS 15.0%
!!! TTCTTTTTCCAAATATTTTT+TGG - chr3_2:57987612-57987631 None:intergenic 15.0%
!! AAATATTTGGAAAAAGAAAA+TGG + chr3_2:57987614-57987633 Msa0413490:CDS 15.0%
!! TGTATTAAATGTATTCATAA+AGG + chr3_2:57989044-57989063 Msa0413490:CDS 15.0%
!! CTTGTAACAATAATATATTT+AGG - chr3_2:57989785-57989804 None:intergenic 15.0%
!!! TATTCACAATCTTTGTTTTT+TGG + chr3_2:57986823-57986842 Msa0413490:intron 20.0%
!!! AAAACTAAAACCTATTTTCT+TGG - chr3_2:57987507-57987526 None:intergenic 20.0%
!! AATAATTAGTAACATCTTGT+TGG - chr3_2:57987913-57987932 None:intergenic 20.0%
!! AGACAAAAACAATTAGAAAA+TGG + chr3_2:57987944-57987963 Msa0413490:CDS 20.0%
!!! GTTTTTTTATGCATTTCAAA+TGG + chr3_2:57988021-57988040 Msa0413490:CDS 20.0%
!!! TAAATTAGCAAATTGCTTTT+GGG + chr3_2:57988054-57988073 Msa0413490:CDS 20.0%
!!! TATTTATTTGTTAAGTAGGT+TGG - chr3_2:57988136-57988155 None:intergenic 20.0%
!!! TAGGTATTTATTTGTTAAGT+AGG - chr3_2:57988140-57988159 None:intergenic 20.0%
!!! TTTATACAAGAAAAGTGTTT+AGG + chr3_2:57988827-57988846 Msa0413490:CDS 20.0%
!!! TTTTTCTTTCTTAGCATTTA+TGG - chr3_2:57989115-57989134 None:intergenic 20.0%
!! GCTAAGAAAGAAAAAAATAA+AGG + chr3_2:57989120-57989139 Msa0413490:CDS 20.0%
!!! CTTTTGTTGTTTTTCTTTTT+AGG + chr3_2:57990141-57990160 Msa0413490:three_prime_UTR 20.0%
!! TTAAAGTAAAATGTTACAAG+AGG - chr3_2:57990180-57990199 None:intergenic 20.0%
! CAAATATCTAAAAGCTTATC+AGG - chr3_2:57986956-57986975 None:intergenic 25.0%
! TGAAAAAACCAGAATAATAG+AGG - chr3_2:57987031-57987050 None:intergenic 25.0%
! TACATCAAGAAAAATGAAGA+TGG + chr3_2:57987686-57987705 Msa0413490:CDS 25.0%
!!! AATAAGTTTTTTTTGCACTG+GGG - chr3_2:57987801-57987820 None:intergenic 25.0%
!!! CAATAAGTTTTTTTTGCACT+GGG - chr3_2:57987802-57987821 None:intergenic 25.0%
!!! TCAATAAGTTTTTTTTGCAC+TGG - chr3_2:57987803-57987822 None:intergenic 25.0%
!! GTAAATTAGCAAATTGCTTT+TGG + chr3_2:57988053-57988072 Msa0413490:CDS 25.0%
!! AGAATGGCTTACAAATATTT+TGG + chr3_2:57988091-57988110 Msa0413490:CDS 25.0%
!!! TTACAAATATTTTGGTGATG+TGG + chr3_2:57988099-57988118 Msa0413490:CDS 25.0%
!! TGATCAGTGATAATAGTTTT+AGG - chr3_2:57988301-57988320 None:intergenic 25.0%
! TGAATCATCATTATTGTATG+TGG + chr3_2:57988365-57988384 Msa0413490:CDS 25.0%
!!! AAAAGTGTTTAGGATTTTTC+AGG + chr3_2:57988837-57988856 Msa0413490:CDS 25.0%
! TTTCTCTGCGATAAATATTT+GGG - chr3_2:57988878-57988897 None:intergenic 25.0%
! AATTTCATGAATCTTGTATG+TGG - chr3_2:57988923-57988942 None:intergenic 25.0%
! AATCACAAAACTTGATCAAT+TGG + chr3_2:57989293-57989312 Msa0413490:CDS 25.0%
! GATTTATCAAACTCTTCATT+TGG - chr3_2:57989330-57989349 None:intergenic 25.0%
! GGTTTGTAACTAAATAAACT+TGG - chr3_2:57989617-57989636 None:intergenic 25.0%
!! AAAACTAGAAGCTTTAACAT+TGG - chr3_2:57989684-57989703 None:intergenic 25.0%
!!! TTCTAGTTTTGTTGATTAAG+AGG + chr3_2:57989694-57989713 Msa0413490:intron 25.0%
! ATTCACACTAGAAAAATAGA+TGG - chr3_2:57989979-57989998 None:intergenic 25.0%
!!! GGTTTTGATATTTGATTTGT+AGG + chr3_2:57990084-57990103 Msa0413490:three_prime_UTR 25.0%
TCCATACCTTGAATAAGAAA+CGG - chr3_2:57986784-57986803 None:intergenic 30.0%
AACAAAGATTGTGAATAGAG+TGG - chr3_2:57986820-57986839 None:intergenic 30.0%
TCACAGTTACTCATCTATTA+TGG + chr3_2:57986886-57986905 Msa0413490:intron 30.0%
TGCATCAATTGAAGATGTAA+AGG + chr3_2:57987463-57987482 Msa0413490:CDS 30.0%
ATGTAAAGGATTACTACGTA+AGG + chr3_2:57987477-57987496 Msa0413490:CDS 30.0%
!!! AATAGGTTTTAGTTTTCGCA+TGG + chr3_2:57987511-57987530 Msa0413490:CDS 30.0%
!!! ATAGGTTTTAGTTTTCGCAT+GGG + chr3_2:57987512-57987531 Msa0413490:CDS 30.0%
GTTACTAAATCAAGAACGAA+TGG + chr3_2:57987539-57987558 Msa0413490:CDS 30.0%
TCAAGAGATTCTTTGTTCAA+AGG + chr3_2:57987574-57987593 Msa0413490:CDS 30.0%
TTAAAGTACACGATCAAACA+AGG + chr3_2:57987642-57987661 Msa0413490:CDS 30.0%
TAAAGTACACGATCAAACAA+GGG + chr3_2:57987643-57987662 Msa0413490:CDS 30.0%
TCAAGAAAAATGAAGATGGA+TGG + chr3_2:57987690-57987709 Msa0413490:CDS 30.0%
CAAGAAAAATGAAGATGGAT+GGG + chr3_2:57987691-57987710 Msa0413490:CDS 30.0%
GGGAAAATAGTACATGATTA+TGG - chr3_2:57987739-57987758 None:intergenic 30.0%
!!! ACACTGATGCTATTTTACTA+GGG - chr3_2:57987850-57987869 None:intergenic 30.0%
!!! AACACTGATGCTATTTTACT+AGG - chr3_2:57987851-57987870 None:intergenic 30.0%
TGAAATGCATAAAAAAACCC+AGG - chr3_2:57988019-57988038 None:intergenic 30.0%
! AACCAAAAAGTATAGACTGT+TGG - chr3_2:57988198-57988217 None:intergenic 30.0%
!!! AAACTGAAGAGAGTTTTGTT+TGG + chr3_2:57988236-57988255 Msa0413490:CDS 30.0%
! TATTTCTAATGCAGTTGCAA+AGG + chr3_2:57988330-57988349 Msa0413490:CDS 30.0%
CACTATGTTCATGATAGATT+TGG - chr3_2:57988423-57988442 None:intergenic 30.0%
TGATGACTTTGATTCTGATT+GGG + chr3_2:57988489-57988508 Msa0413490:CDS 30.0%
TCTACTTCATTCGAGAAAAA+TGG + chr3_2:57988563-57988582 Msa0413490:CDS 30.0%
ATTCATACTTTCACTCCTTT+GGG - chr3_2:57988635-57988654 None:intergenic 30.0%
TATTCATACTTTCACTCCTT+TGG - chr3_2:57988636-57988655 None:intergenic 30.0%
TGTATCACAAACTTTCTCAA+TGG - chr3_2:57988691-57988710 None:intergenic 30.0%
CTTTCTCTGCGATAAATATT+TGG - chr3_2:57988879-57988898 None:intergenic 30.0%
TGAAAAGTCACATGATAGTT+AGG - chr3_2:57988958-57988977 None:intergenic 30.0%
ATATTGCAATTCAAGCTTTG+CGG + chr3_2:57989265-57989284 Msa0413490:CDS 30.0%
ATCAGTTGTAGTTATTGCAA+CGG + chr3_2:57989483-57989502 Msa0413490:CDS 30.0%
! AGATGTCCAAGTTTAAAACA+TGG + chr3_2:57989525-57989544 Msa0413490:CDS 30.0%
!! TACCTTCCATGTTTTAAACT+TGG - chr3_2:57989534-57989553 None:intergenic 30.0%
GTAACTAAATAAACTTGGCA+TGG - chr3_2:57989612-57989631 None:intergenic 30.0%
! GTTACAAACCAATGTCTTTT+AGG + chr3_2:57989627-57989646 Msa0413490:intron 30.0%
ATATCACACCTAAAAGACAT+TGG - chr3_2:57989638-57989657 None:intergenic 30.0%
TTTAGGTGTGATATCATCAA+TGG + chr3_2:57989644-57989663 Msa0413490:intron 30.0%
!! TACTGTTGTTATTGTTTTGC+TGG + chr3_2:57989717-57989736 Msa0413490:intron 30.0%
CTAGTGTTAATTCCTAGTAT+TGG + chr3_2:57989816-57989835 Msa0413490:intron 30.0%
TTGGCAAAATTATCCCTTAT+TGG - chr3_2:57989862-57989881 None:intergenic 30.0%
!!! CTATTTTAGTTTCAGCTAGT+TGG + chr3_2:57990112-57990131 Msa0413490:three_prime_UTR 30.0%
! TGTTGTTTGCTGAATGTTAT+TGG + chr3_2:57990210-57990229 Msa0413490:three_prime_UTR 30.0%
TGTGAAAATGAAGGAGAACA+GGG - chr3_2:57986706-57986725 None:intergenic 35.0%
TTGTGAAAATGAAGGAGAAC+AGG - chr3_2:57986707-57986726 None:intergenic 35.0%
ATCCTTCCGTTTCTTATTCA+AGG + chr3_2:57986775-57986794 Msa0413490:five_prime_UTR 35.0%
TACCTTGAATAAGAAACGGA+AGG - chr3_2:57986780-57986799 None:intergenic 35.0%
TCCGTTTCTTATTCAAGGTA+TGG + chr3_2:57986780-57986799 Msa0413490:intron 35.0%
TCAACCAGCAAACTAAAGAT+TGG - chr3_2:57987111-57987130 None:intergenic 35.0%
TCATCATACATGTACGTAAC+AGG + chr3_2:57987273-57987292 Msa0413490:intron 35.0%
AGAACGAATGGTATTGTGAT+TGG + chr3_2:57987551-57987570 Msa0413490:CDS 35.0%
AGAGATTCTTTGTTCAAAGG+AGG + chr3_2:57987577-57987596 Msa0413490:CDS 35.0%
GAGATTCTTTGTTCAAAGGA+GGG + chr3_2:57987578-57987597 Msa0413490:CDS 35.0%
AAGATGTTGTGAACTTCTTG+GGG - chr3_2:57987759-57987778 None:intergenic 35.0%
GAAGATGTTGTGAACTTCTT+GGG - chr3_2:57987760-57987779 None:intergenic 35.0%
ATTGATGTGCTTCATGATTC+TGG + chr3_2:57987818-57987837 Msa0413490:CDS 35.0%
AATTGTCAGTTGAAGAATCC+TGG + chr3_2:57987998-57988017 Msa0413490:CDS 35.0%
ATTGTCAGTTGAAGAATCCT+GGG + chr3_2:57987999-57988018 Msa0413490:CDS 35.0%
!!! ATTGCTTTTGGGTTGATTCA+AGG + chr3_2:57988065-57988084 Msa0413490:CDS 35.0%
TGATGATTAACTCCAGTGAA+TGG - chr3_2:57988175-57988194 None:intergenic 35.0%
! CACCAACAGTCTATACTTTT+TGG + chr3_2:57988193-57988212 Msa0413490:CDS 35.0%
!!! TTTTTGGTTGTGCTCTGTTA+TGG + chr3_2:57988209-57988228 Msa0413490:CDS 35.0%
!! TTTTGGTTGTGCTCTGTTAT+GGG + chr3_2:57988210-57988229 Msa0413490:CDS 35.0%
CAATAATGATGATTCACCTC+TGG - chr3_2:57988361-57988380 None:intergenic 35.0%
! TAGATTTGGTTCAAGTACTC+TGG - chr3_2:57988409-57988428 None:intergenic 35.0%
AGTCATCAGTAGTGATAGTT+TGG - chr3_2:57988477-57988496 None:intergenic 35.0%
CTGATGACTTTGATTCTGAT+TGG + chr3_2:57988488-57988507 Msa0413490:CDS 35.0%
GATGACTTTGATTCTGATTG+GGG + chr3_2:57988490-57988509 Msa0413490:CDS 35.0%
ACGAGTTGCAAGATAACAAA+TGG + chr3_2:57988530-57988549 Msa0413490:CDS 35.0%
AAACTCTGACGTACATAAGA+AGG - chr3_2:57988592-57988611 None:intergenic 35.0%
GTTTGTGATACAGTATGAGA+AGG + chr3_2:57988699-57988718 Msa0413490:CDS 35.0%
TCTTGATGCACGTTATAACA+AGG + chr3_2:57988723-57988742 Msa0413490:CDS 35.0%
TTTATATCCCATGGAAGAAG+AGG + chr3_2:57988795-57988814 Msa0413490:CDS 35.0%
!!! TAGGATTTTTCAGGATGAGT+TGG + chr3_2:57988846-57988865 Msa0413490:CDS 35.0%
!!! ATTTTTCAGGATGAGTTGGT+TGG + chr3_2:57988850-57988869 Msa0413490:CDS 35.0%
!!! TTTTTCAGGATGAGTTGGTT+GGG + chr3_2:57988851-57988870 Msa0413490:CDS 35.0%
GGCTTAGAACATATTGAGAA+GGG - chr3_2:57989086-57989105 None:intergenic 35.0%
TCTTAGCATTTATGGTCCTT+CGG - chr3_2:57989107-57989126 None:intergenic 35.0%
TCTCTTGAACTATCTGAAAG+AGG + chr3_2:57989219-57989238 Msa0413490:CDS 35.0%
TTTACGAATGAAAGGCAGTT+TGG + chr3_2:57989440-57989459 Msa0413490:CDS 35.0%
TGTAGTTATTGCAACGGAAA+AGG + chr3_2:57989489-57989508 Msa0413490:CDS 35.0%
! GTCCAAGTTTAAAACATGGA+AGG + chr3_2:57989529-57989548 Msa0413490:CDS 35.0%
TTATCCCTTATTGGCAAAAC+AGG - chr3_2:57989853-57989872 None:intergenic 35.0%
! GATAATTTTGCCAAAGCCAA+AGG + chr3_2:57989868-57989887 Msa0413490:CDS 35.0%
GATTTCTCTGATGTGATTCT+AGG + chr3_2:57989896-57989915 Msa0413490:exon 35.0%
AATAGATGGAAATTCACACC+AGG - chr3_2:57989965-57989984 None:intergenic 35.0%
! CTTTTCAGCTTGTGTTTTCT+AGG + chr3_2:57990048-57990067 Msa0413490:three_prime_UTR 35.0%
AGAACTGAACGATGGGAATT+TGG - chr3_2:57986866-57986885 None:intergenic 40.0%
ACTGTGAAGAACTGAACGAT+GGG - chr3_2:57986873-57986892 None:intergenic 40.0%
AACTGTGAAGAACTGAACGA+TGG - chr3_2:57986874-57986893 None:intergenic 40.0%
! AATAATAGAGGTGCATGGGA+TGG - chr3_2:57987019-57987038 None:intergenic 40.0%
! CCAGAATAATAGAGGTGCAT+GGG - chr3_2:57987023-57987042 None:intergenic 40.0%
! ACCAGAATAATAGAGGTGCA+TGG - chr3_2:57987024-57987043 None:intergenic 40.0%
!! ACCTCCAATCTTTAGTTTGC+TGG + chr3_2:57987104-57987123 Msa0413490:intron 40.0%
ACCAGCAAACTAAAGATTGG+AGG - chr3_2:57987108-57987127 None:intergenic 40.0%
!! CTTTAGTTTGCTGGTTGATG+CGG + chr3_2:57987113-57987132 Msa0413490:intron 40.0%
!! TTTAGTTTGCTGGTTGATGC+GGG + chr3_2:57987114-57987133 Msa0413490:intron 40.0%
ACATGTACGTAACAGGATTG+TGG + chr3_2:57987280-57987299 Msa0413490:intron 40.0%
CATGTACGTAACAGGATTGT+GGG + chr3_2:57987281-57987300 Msa0413490:intron 40.0%
CATGAACATACCACCATGAA+TGG + chr3_2:57987344-57987363 Msa0413490:CDS 40.0%
TACATCATCTGAGCCATTCA+TGG - chr3_2:57987360-57987379 None:intergenic 40.0%
! ATTCCTTCAAAGGGCTCTAA+GGG - chr3_2:57987437-57987456 None:intergenic 40.0%
GCAAACTCCATTCCTTCAAA+GGG - chr3_2:57987446-57987465 None:intergenic 40.0%
TGCAAACTCCATTCCTTCAA+AGG - chr3_2:57987447-57987466 None:intergenic 40.0%
GTAAGGTACGCCAAGAAAAT+AGG + chr3_2:57987494-57987513 Msa0413490:CDS 40.0%
CGAAGATGTTGTGAACTTCT+TGG - chr3_2:57987761-57987780 None:intergenic 40.0%
GTGCTTCATGATTCTGGTAT+AGG + chr3_2:57987824-57987843 Msa0413490:CDS 40.0%
ATTATCAACACCACCACTCT+CGG - chr3_2:57987879-57987898 None:intergenic 40.0%
!! AGTGGTGGTGTTGATAATGT+TGG + chr3_2:57987881-57987900 Msa0413490:CDS 40.0%
! GGTTGATTCAAGGTCTAGAA+TGG + chr3_2:57988075-57988094 Msa0413490:CDS 40.0%
!! TGAATGGAACAAAGGGCATT+AGG - chr3_2:57988159-57988178 None:intergenic 40.0%
ACTCCAGTGAATGGAACAAA+GGG - chr3_2:57988166-57988185 None:intergenic 40.0%
AACTCCAGTGAATGGAACAA+AGG - chr3_2:57988167-57988186 None:intergenic 40.0%
TTGTTTGGTTGCTACGTACT+TGG + chr3_2:57988251-57988270 Msa0413490:CDS 40.0%
ACGTACTTGGTTAGAAGCAA+TGG + chr3_2:57988264-57988283 Msa0413490:CDS 40.0%
ACTTGGTTAGAAGCAATGGA+TGG + chr3_2:57988268-57988287 Msa0413490:CDS 40.0%
! AGTTGCAAAGGTTTTTCCAG+AGG + chr3_2:57988342-57988361 Msa0413490:CDS 40.0%
GAGAGAAGAATGTCAAGACA+AGG + chr3_2:57988749-57988768 Msa0413490:CDS 40.0%
GGATATAAAGTACGCAGAAG+TGG - chr3_2:57988784-57988803 None:intergenic 40.0%
TCTGCGTACTTTATATCCCA+TGG + chr3_2:57988786-57988805 Msa0413490:CDS 40.0%
! TTTGAAGCCTCTTCTTCCAT+GGG - chr3_2:57988805-57988824 None:intergenic 40.0%
!!! TTTTGAAGCCTCTTCTTCCA+TGG - chr3_2:57988806-57988825 None:intergenic 40.0%
! TTGTCGCATGTTTGAGTTTG+TGG + chr3_2:57989005-57989024 Msa0413490:CDS 40.0%
! TGTCGCATGTTTGAGTTTGT+GGG + chr3_2:57989006-57989025 Msa0413490:CDS 40.0%
CGGCTTAGAACATATTGAGA+AGG - chr3_2:57989087-57989106 None:intergenic 40.0%
! CTCAATATGTTCTAAGCCGA+AGG + chr3_2:57989088-57989107 Msa0413490:CDS 40.0%
AATTGCAATTGAAGACCTCG+AGG + chr3_2:57989143-57989162 Msa0413490:CDS 40.0%
GATCACACAAGTTTATGGTC+TGG - chr3_2:57989386-57989405 None:intergenic 40.0%
TGGAGGATCACACAAGTTTA+TGG - chr3_2:57989391-57989410 None:intergenic 40.0%
! TTGGACATCTACGTTTGTTG+TGG - chr3_2:57989515-57989534 None:intergenic 40.0%
GTCTGCAACAAACCAATACT+AGG - chr3_2:57989831-57989850 None:intergenic 40.0%
! CAGACCTGTTTTGCCAATAA+GGG + chr3_2:57989846-57989865 Msa0413490:intron 40.0%
! AATTTTGCCAAAGCCAAAGG+TGG + chr3_2:57989871-57989890 Msa0413490:CDS 40.0%
TCTGATGTGATTCTAGGCTT+TGG + chr3_2:57989902-57989921 Msa0413490:exon 40.0%
!! CTAGGCTTTGGATGTAATTC+TGG + chr3_2:57989914-57989933 Msa0413490:three_prime_UTR 40.0%
TGTAATTCTGGCGTGATTTC+AGG + chr3_2:57989926-57989945 Msa0413490:three_prime_UTR 40.0%
!!! GTGATTTCAGGTTTTGGATG+CGG + chr3_2:57989938-57989957 Msa0413490:three_prime_UTR 40.0%
! TTCAGCTTGTGTTTTCTAGG+AGG + chr3_2:57990051-57990070 Msa0413490:three_prime_UTR 40.0%
!! TCAGCTTGTGTTTTCTAGGA+GGG + chr3_2:57990052-57990071 Msa0413490:three_prime_UTR 40.0%
CAGAGCGGTTGTGAAAATGA+AGG - chr3_2:57986715-57986734 None:intergenic 45.0%
GTCGAGAATCAAGTACAGAG+CGG - chr3_2:57986730-57986749 None:intergenic 45.0%
GCAACAGAGAGTTGCAGATT+CGG - chr3_2:57986755-57986774 None:intergenic 45.0%
AACGATGGGAATTTGGTACG+TGG - chr3_2:57986859-57986878 None:intergenic 45.0%
CCCATGCACCTCTATTATTC+TGG + chr3_2:57987020-57987039 Msa0413490:intron 45.0%
ATCATCTGAGCCATTCATGG+TGG - chr3_2:57987357-57987376 None:intergenic 45.0%
!! TTCCTTCAAAGGGCTCTAAG+GGG - chr3_2:57987436-57987455 None:intergenic 45.0%
CATTCCTTCAAAGGGCTCTA+AGG - chr3_2:57987438-57987457 None:intergenic 45.0%
! CTTAGAGCCCTTTGAAGGAA+TGG + chr3_2:57987436-57987455 Msa0413490:CDS 45.0%
GTACACGATCAAACAAGGGT+AGG + chr3_2:57987647-57987666 Msa0413490:CDS 45.0%
TCAGTGTTATGTACCGAGAG+TGG + chr3_2:57987863-57987882 Msa0413490:CDS 45.0%
GCATTTCAAATGGACGCAGA+AGG + chr3_2:57988031-57988050 Msa0413490:CDS 45.0%
ATGCCCTTTGTTCCATTCAC+TGG + chr3_2:57988160-57988179 Msa0413490:CDS 45.0%
! GTACGTCAGAGTTTTTGTGC+TGG + chr3_2:57988598-57988617 Msa0413490:CDS 45.0%
CATACTTTCACTCCTTTGGG+TGG - chr3_2:57988632-57988651 None:intergenic 45.0%
TGCAATTCAAGCTTTGCGGA+AGG + chr3_2:57989269-57989288 Msa0413490:CDS 45.0%
GTCTGGTCATCAGAGACTTT+AGG - chr3_2:57989369-57989388 None:intergenic 45.0%
CCTTTCATTCGTAAAGTGCG+TGG - chr3_2:57989435-57989454 None:intergenic 45.0%
CCACGCACTTTACGAATGAA+AGG + chr3_2:57989432-57989451 Msa0413490:CDS 45.0%
! GCAGACCTGTTTTGCCAATA+AGG + chr3_2:57989845-57989864 Msa0413490:intron 45.0%
! AAATCCACCACCTTTGGCTT+TGG - chr3_2:57989881-57989900 None:intergenic 45.0%
TCAGAGAAATCCACCACCTT+TGG - chr3_2:57989887-57989906 None:intergenic 45.0%
!!! TCTGGCGTGATTTCAGGTTT+TGG + chr3_2:57989932-57989951 Msa0413490:three_prime_UTR 45.0%
! TTTCCCAGCTTTTGTACCTC+TGG + chr3_2:57989998-57990017 Msa0413490:three_prime_UTR 45.0%
!! CAGCTTGTGTTTTCTAGGAG+GGG + chr3_2:57990053-57990072 Msa0413490:three_prime_UTR 45.0%
! TTTCTAGGAGGGGATCTGTT+CGG + chr3_2:57990063-57990082 Msa0413490:three_prime_UTR 45.0%
!!! TTTTTTAATTATATATATGT+TGG + chr3_2:57987240-57987259 Msa0413490:intron 5.0%
GTGTTATGTACCGAGAGTGG+TGG + chr3_2:57987866-57987885 Msa0413490:CDS 50.0%
ACTTTCACTCCTTTGGGTGG+TGG - chr3_2:57988629-57988648 None:intergenic 50.0%
GCAATTGAAGACCTCGAGGA+AGG + chr3_2:57989147-57989166 Msa0413490:CDS 50.0%
!! CTTTGTTTCTGCCTTCCTCG+AGG - chr3_2:57989161-57989180 None:intergenic 50.0%
AAGTGCGTGGACGACCTTTA+GGG - chr3_2:57989422-57989441 None:intergenic 50.0%
AAAGTGCGTGGACGACCTTT+AGG - chr3_2:57989423-57989442 None:intergenic 50.0%
TTTGCCAAAGCCAAAGGTGG+TGG + chr3_2:57989874-57989893 Msa0413490:CDS 50.0%
! GCACCAGAGGTACAAAAGCT+GGG - chr3_2:57990004-57990023 None:intergenic 50.0%
! CAGCTTTTGTACCTCTGGTG+CGG + chr3_2:57990003-57990022 Msa0413490:three_prime_UTR 50.0%
GCGGGTAGCATTACTAGTCG+TGG + chr3_2:57987132-57987151 Msa0413490:intron 55.0%
! TCTAAGGGGAGCTCTGATGG+CGG - chr3_2:57987422-57987441 None:intergenic 55.0%
CTCCCCTTAGAGCCCTTTGA+AGG + chr3_2:57987431-57987450 Msa0413490:CDS 55.0%
CTGGAATGTCCACCACCCAA+AGG + chr3_2:57988617-57988636 Msa0413490:CDS 55.0%
CTTGTGTGATCCTCCACGTG+CGG + chr3_2:57989395-57989414 Msa0413490:CDS 55.0%
!!! TCAGGTTTTGGATGCGGTCC+TGG + chr3_2:57989944-57989963 Msa0413490:three_prime_UTR 55.0%
! CGCACCAGAGGTACAAAAGC+TGG - chr3_2:57990005-57990024 None:intergenic 55.0%
!! GGCTCTAAGGGGAGCTCTGA+TGG - chr3_2:57987425-57987444 None:intergenic 60.0%
! CCTTTAGGGACCGCACGTGG+AGG - chr3_2:57989408-57989427 None:intergenic 65.0%
CCTCCACGTGCGGTCCCTAA+AGG + chr3_2:57989405-57989424 Msa0413490:CDS 65.0%
! CGACCTTTAGGGACCGCACG+TGG - chr3_2:57989411-57989430 None:intergenic 65.0%
GTACCTCTGGTGCGGCTGTG+CGG + chr3_2:57990011-57990030 Msa0413490:three_prime_UTR 65.0%
TACCTCTGGTGCGGCTGTGC+GGG + chr3_2:57990012-57990031 Msa0413490:three_prime_UTR 65.0%
GACCCGCACAGCCGCACCAG+AGG - chr3_2:57990017-57990036 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 57986691 57990295 57986691 ID=Msa0413490;Name=Msa0413490
chr3_2 mRNA 57986691 57990295 57986691 ID=Msa0413490-mRNA-1;Parent=Msa0413490;Name=Msa0413490-mRNA-1;_AED=0.03;_eAED=0.03;_QI=128|0.5|1|1|0.5|0.33|3|389|763
chr3_2 exon 57986691 57986796 57986691 ID=Msa0413490-mRNA-1:exon:11979;Parent=Msa0413490-mRNA-1
chr3_2 exon 57987295 57989550 57987295 ID=Msa0413490-mRNA-1:exon:11980;Parent=Msa0413490-mRNA-1
chr3_2 exon 57989849 57990295 57989849 ID=Msa0413490-mRNA-1:exon:11981;Parent=Msa0413490-mRNA-1
chr3_2 five_prime_UTR 57986691 57986796 57986691 ID=Msa0413490-mRNA-1:five_prime_utr;Parent=Msa0413490-mRNA-1
chr3_2 five_prime_UTR 57987295 57987316 57987295 ID=Msa0413490-mRNA-1:five_prime_utr;Parent=Msa0413490-mRNA-1
chr3_2 CDS 57987317 57989550 57987317 ID=Msa0413490-mRNA-1:cds;Parent=Msa0413490-mRNA-1
chr3_2 CDS 57989849 57989906 57989849 ID=Msa0413490-mRNA-1:cds;Parent=Msa0413490-mRNA-1
chr3_2 three_prime_UTR 57989907 57990295 57989907 ID=Msa0413490-mRNA-1:three_prime_utr;Parent=Msa0413490-mRNA-1
Gene Sequence

>Msa0413490

ATGACTGATCAAGAAATGACAGATATGCATGAACATACCACCATGAATGGCTCAGATGATGTACTTGCAAATGCTATTGATGCAGACTCTCTCAATGATAGACCGCCATCAGAGCTCCCCTTAGAGCCCTTTGAAGGAATGGAGTTTGCATCAATTGAAGATGTAAAGGATTACTACGTAAGGTACGCCAAGAAAATAGGTTTTAGTTTTCGCATGGGTCGTGTTACTAAATCAAGAACGAATGGTATTGTGATTGGTCAAGAGATTCTTTGTTCAAAGGAGGGTTTTAGATCCAAAAAATATTTGGAAAAAGAAAATGGTAGTCTTAAAGTACACGATCAAACAAGGGTAGGATGCAAGTCAATGTTGTACATCAAGAAAAATGAAGATGGATGGGTTGTTTCTAGATTTGTAAGAGACCATAATCATGTACTATTTTCCCCAAGAAGTTCACAACATCTTCGAGTACATAGAAAGAAAACCCCAGTGCAAAAAAAACTTATTGATGTGCTTCATGATTCTGGTATAGGCCCTAGTAAAATAGCATCAGTGTTATGTACCGAGAGTGGTGGTGTTGATAATGTTGGATTTAGCCAACAAGATGTTACTAATTATTTAAGTGTAAAGAGACAAAAACAATTAGAAAATGGAGATGCTCACTTGATGTTATCGTACTTTAAGAATTGTCAGTTGAAGAATCCTGGGTTTTTTTATGCATTTCAAATGGACGCAGAAGGTAAATTAGCAAATTGCTTTTGGGTTGATTCAAGGTCTAGAATGGCTTACAAATATTTTGGTGATGTGGTGACTTTTGATCCAACCTACTTAACAAATAAATACCTAATGCCCTTTGTTCCATTCACTGGAGTTAATCATCACCAACAGTCTATACTTTTTGGTTGTGCTCTGTTATGGGATGAAACTGAAGAGAGTTTTGTTTGGTTGCTACGTACTTGGTTAGAAGCAATGGATGGAGTTAGTCCTAAAACTATTATCACTGATCAAGACACTTCTATTTCTAATGCAGTTGCAAAGGTTTTTCCAGAGGTGAATCATCATTATTGTATGTGGCATATTGAGAAGAAAGTTCCAGAGTACTTGAACCAAATCTATCATGAACATAGTGAGTTTAAAAATCAATTTCACAAGTGCATTCACCAAACTATCACTACTGATGACTTTGATTCTGATTGGGGAGCAATGATAGATAAGTACGAGTTGCAAGATAACAAATGGCTAAAGAAGATCTACTTCATTCGAGAAAAATGGATTCCTTCTTATGTACGTCAGAGTTTTTGTGCTGGAATGTCCACCACCCAAAGGAGTGAAAGTATGAATAAATTTTTTAAGGGCTTTTTGAATTCAAGTACTCCATTGAGAAAGTTTGTGATACAGTATGAGAAGGCTCTTGATGCACGTTATAACAAGGAAAGAGAGAAGAATGTCAAGACAAGGAATTCAAAACCACTTCTGCGTACTTTATATCCCATGGAAGAAGAGGCTTCAAAAATTTATACAAGAAAAGTGTTTAGGATTTTTCAGGATGAGTTGGTTGGGTCCCAAATATTTATCGCAGAGAAAGTTAAGTTTTTTGATGAAGTTTCCACATACAAGATTCATGAAATTTACAAAGAAAAACCTAACTATCATGTGACTTTTCAGAACATTTCAAAAGAAGCAAAATGTAGTTGTCGCATGTTTGAGTTTGTGGGAATTCTCTGTAGACATGTATTAAATGTATTCATAAAGGAAAATGTCTATTCTCTCCCTTCTCAATATGTTCTAAGCCGAAGGACCATAAATGCTAAGAAAGAAAAAAATAAAGGAATTGCAATTGAAGACCTCGAGGAAGGCAGAAACAAAGCTTCAAGTACTTCATTATTTAATAGTATTATGGTTGAGTCTCTTGAACTATCTGAAAGAGGTTCACGATCAGAAAAGCATCATGATATTGCAATTCAAGCTTTGCGGAAGGCAATCACAAAACTTGATCAATTGGATCTTGAAGAACCAAATGAAGAGTTTGATAAATCGACATTTGAAGTTATGCCTAAAGTCTCTGATGACCAGACCATAAACTTGTGTGATCCTCCACGTGCGGTCCCTAAAGGTCGTCCACGCACTTTACGAATGAAAGGCAGTTTGGAATTGCACAAGAAAAATTCAATCAGTTGTAGTTATTGCAACGGAAAAGGCCACAACAAACGTAGATGTCCAAGTTTAAAACATGGAAGACCTGTTTTGCCAATAAGGGATAATTTTGCCAAAGCCAAAGGTGGTGGATTTCTCTGA
Protein sequence

>Msa0413490

MTDQEMTDMHEHTTMNGSDDVLANAIDADSLNDRPPSELPLEPFEGMEFASIEDVKDYYVRYAKKIGFSFRMGRVTKSRTNGIVIGQEILCSKEGFRSKKYLEKENGSLKVHDQTRVGCKSMLYIKKNEDGWVVSRFVRDHNHVLFSPRSSQHLRVHRKKTPVQKKLIDVLHDSGIGPSKIASVLCTESGGVDNVGFSQQDVTNYLSVKRQKQLENGDAHLMLSYFKNCQLKNPGFFYAFQMDAEGKLANCFWVDSRSRMAYKYFGDVVTFDPTYLTNKYLMPFVPFTGVNHHQQSILFGCALLWDETEESFVWLLRTWLEAMDGVSPKTIITDQDTSISNAVAKVFPEVNHHYCMWHIEKKVPEYLNQIYHEHSEFKNQFHKCIHQTITTDDFDSDWGAMIDKYELQDNKWLKKIYFIREKWIPSYVRQSFCAGMSTTQRSESMNKFFKGFLNSSTPLRKFVIQYEKALDARYNKEREKNVKTRNSKPLLRTLYPMEEEASKIYTRKVFRIFQDELVGSQIFIAEKVKFFDEVSTYKIHEIYKEKPNYHVTFQNISKEAKCSCRMFEFVGILCRHVLNVFIKENVYSLPSQYVLSRRTINAKKEKNKGIAIEDLEEGRNKASSTSLFNSIMVESLELSERGSRSEKHHDIAIQALRKAITKLDQLDLEEPNEEFDKSTFEVMPKVSDDQTINLCDPPRAVPKGRPRTLRMKGSLELHKKNSISCSYCNGKGHNKRRCPSLKHGRPVLPIRDNFAKAKGGGFL*