AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0437590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437590 MtrunA17_Chr1g0202341 70.266 676 177 3 4 657 12 685 0.0 985
Msa0437590 MtrunA17_Chr5g0448761 40.591 643 340 7 36 644 53 687 9.45e-167 499
Msa0437590 MtrunA17_Chr5g0440451 33.697 641 369 9 42 644 42 664 3.41e-123 390
Msa0437590 MtrunA17_Chr5g0448511 38.362 464 256 4 206 644 1 459 8.02e-117 362
Msa0437590 MtrunA17_Chr1g0207551 32.850 621 382 6 41 638 32 640 1.15e-112 360
Msa0437590 MtrunA17_Chr3g0118611 35.878 524 294 5 218 702 118 638 4.82e-111 354
Msa0437590 MtrunA17_Chr5g0441581 32.322 659 387 14 20 642 2 637 4.35e-104 334
Msa0437590 MtrunA17_Chr2g0287061 32.909 629 342 12 41 641 181 757 1.11e-103 336
Msa0437590 MtrunA17_Chr2g0287061 28.161 174 92 5 17 178 9 161 1.50e-15 80.9
Msa0437590 MtrunA17_Chr2g0296781 30.422 687 397 12 47 688 1 651 1.95e-102 330
Msa0437590 MtrunA17_Chr3g0080351 31.438 633 365 8 41 637 74 673 2.01e-102 333
Msa0437590 MtrunA17_Chr2g0329031 31.369 628 386 11 42 645 13 619 2.10e-102 331
Msa0437590 MtrunA17_Chr2g0324011 32.404 574 352 7 36 581 3 568 2.59e-102 326
Msa0437590 MtrunA17_Chr1g0203721 31.200 625 399 8 46 644 66 685 6.49e-99 325
Msa0437590 MtrunA17_Chr8g0363841 30.711 661 397 13 31 642 3 651 1.24e-98 319
Msa0437590 MtrunA17_Chr2g0291581 31.507 657 385 14 23 641 50 679 1.31e-97 317
Msa0437590 MtrunA17_Chr2g0287651 31.851 562 352 6 47 583 79 634 2.33e-96 318
Msa0437590 MtrunA17_Chr6g0458391 32.632 570 336 10 37 581 219 765 4.89e-91 301
Msa0437590 MtrunA17_Chr6g0458391 27.174 184 123 3 23 198 71 251 2.61e-11 67.4
Msa0437590 MtrunA17_Chr6g0477261 31.884 552 335 9 165 688 2 540 1.76e-87 289
Msa0437590 MtrunA17_Chr3g0082121 30.174 633 388 12 22 623 22 631 2.32e-84 281
Msa0437590 MtrunA17_Chr1g0198761 28.005 732 464 14 44 737 48 754 2.73e-84 283
Msa0437590 MtrunA17_Chr1g0196541 30.783 562 344 11 47 575 1 550 1.12e-82 278
Msa0437590 MtrunA17_Chr2g0291591 31.693 508 315 8 42 525 63 562 2.14e-82 273
Msa0437590 MtrunA17_Chr1g0203051 28.620 587 383 8 11 569 44 622 1.20e-79 267
Msa0437590 MtrunA17_Chr2g0294841 25.900 722 478 16 37 716 39 745 5.41e-70 244
Msa0437590 MtrunA17_Chr1g0164591 35.556 315 194 2 134 448 14 319 4.97e-65 219
Msa0437590 MtrunA17_Chr2g0290391 27.778 666 425 17 12 641 21 666 9.37e-65 228
Msa0437590 MtrunA17_Chr2g0276841 26.741 632 410 16 43 641 70 681 3.56e-63 224
Msa0437590 MtrunA17_Chr7g0258861 37.113 291 178 4 35 322 2 290 7.45e-61 207
Msa0437590 MtrunA17_Chr5g0431001 32.836 402 255 8 43 432 61 459 1.51e-55 198
Msa0437590 MtrunA17_Chr3g0077241 75.000 92 19 2 6 96 1 89 2.75e-38 138
Msa0437590 MtrunA17_Chr4g0052331 52.632 95 45 0 1 95 1 95 3.55e-27 105
Msa0437590 MtrunA17_Chr2g0329361 37.086 151 83 3 5 148 22 167 2.39e-25 105
Msa0437590 MtrunA17_Chr1g0149131 33.043 115 77 0 323 437 1 115 6.25e-21 89.0
Msa0437590 MtrunA17_Chr2g0329421 30.921 152 82 3 42 173 26 174 3.75e-20 89.7
Msa0437590 MtrunA17_Chr4g0033611 30.189 159 87 3 36 173 69 224 5.93e-19 87.4
Msa0437590 MtrunA17_Chr3g0078041 36.752 117 63 4 42 152 49 160 9.66e-17 80.1
Msa0437590 MtrunA17_Chr7g0233911 37.383 107 61 3 42 145 33 136 8.27e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437590 AT4G38180.1 39.053 676 365 10 2 637 21 689 2.06e-159 481
Msa0437590 AT2G27110.2 35.152 623 346 10 42 641 48 635 1.08e-118 377
Msa0437590 AT2G27110.1 35.152 623 346 10 42 641 48 635 1.08e-118 377
Msa0437590 AT3G06250.2 33.968 630 328 12 42 641 189 760 2.08e-117 371
Msa0437590 AT3G06250.2 34.906 106 53 2 41 145 26 116 1.58e-14 78.2
Msa0437590 AT3G06250.1 33.968 630 328 12 42 641 189 760 2.08e-117 371
Msa0437590 AT3G06250.1 34.906 106 53 2 41 145 26 116 1.58e-14 78.2
Msa0437590 AT3G06250.3 33.968 630 328 12 42 641 189 760 2.08e-117 371
Msa0437590 AT3G06250.3 34.906 106 53 2 41 145 26 116 1.58e-14 78.2
Msa0437590 AT4G15090.1 31.442 652 408 8 37 659 45 686 7.85e-117 371
Msa0437590 AT4G15090.5 31.442 652 408 8 37 659 45 686 7.85e-117 371
Msa0437590 AT4G15090.3 31.442 652 408 8 37 659 45 686 7.85e-117 371
Msa0437590 AT4G15090.2 31.442 652 408 8 37 659 45 686 7.85e-117 371
Msa0437590 AT4G15090.4 31.442 652 408 8 37 659 45 686 7.85e-117 371
Msa0437590 AT5G18960.2 34.019 632 328 12 42 641 210 784 9.36e-115 365
Msa0437590 AT5G18960.2 29.688 128 74 2 41 167 41 153 4.42e-14 76.6
Msa0437590 AT5G18960.1 34.019 632 328 12 42 641 210 784 9.36e-115 365
Msa0437590 AT5G18960.1 29.688 128 74 2 41 167 41 153 4.42e-14 76.6
Msa0437590 AT2G27110.3 38.288 444 250 2 218 641 51 490 1.38e-107 343
Msa0437590 AT1G76320.3 30.421 618 385 11 47 640 1 597 3.27e-96 313
Msa0437590 AT1G76320.2 30.421 618 385 11 47 640 1 597 8.14e-96 313
Msa0437590 AT1G76320.1 30.421 618 385 11 47 640 1 597 9.37e-96 313
Msa0437590 AT1G76320.4 30.421 618 385 11 47 640 1 597 9.37e-96 313
Msa0437590 AT3G22170.2 28.504 635 387 7 39 638 66 668 4.29e-94 311
Msa0437590 AT3G22170.1 28.504 635 387 7 39 638 66 668 4.29e-94 311
Msa0437590 AT4G38170.1 33.958 480 281 7 222 676 21 489 5.57e-91 295
Msa0437590 AT2G32250.5 30.240 625 357 9 46 645 41 611 4.11e-89 296
Msa0437590 AT2G32250.2 30.240 625 357 9 46 645 41 611 6.71e-89 296
Msa0437590 AT2G32250.4 30.240 625 357 9 46 645 41 611 6.71e-89 296
Msa0437590 AT2G32250.6 30.240 625 357 9 46 645 41 611 8.22e-89 296
Msa0437590 AT2G32250.1 30.240 625 357 9 46 645 41 611 8.22e-89 296
Msa0437590 AT2G32250.3 30.240 625 357 9 46 645 41 611 8.22e-89 296
Msa0437590 AT2G32250.7 30.128 624 357 9 47 645 1 570 3.45e-88 294
Msa0437590 AT2G32250.8 30.128 624 357 9 47 645 1 570 3.99e-88 293
Msa0437590 AT1G52520.1 28.065 677 407 14 11 645 61 699 3.29e-86 287
Msa0437590 AT4G19990.3 28.959 663 385 14 41 662 19 636 2.04e-83 281
Msa0437590 AT4G19990.4 28.959 663 385 14 41 662 19 636 2.04e-83 281
Msa0437590 AT4G19990.7 28.959 663 385 14 41 662 33 650 2.66e-83 281
Msa0437590 AT4G19990.5 28.959 663 385 14 41 662 19 636 3.05e-83 280
Msa0437590 AT4G19990.6 28.959 663 385 14 41 662 19 636 4.28e-83 280
Msa0437590 AT4G19990.2 28.959 663 385 14 41 662 19 636 4.28e-83 280
Msa0437590 AT1G80010.1 27.474 677 429 17 12 650 73 725 5.09e-79 268
Msa0437590 AT4G19990.1 29.809 577 332 12 115 662 47 579 2.26e-76 260
Msa0437590 AT5G28530.1 28.031 635 400 14 43 635 55 674 5.17e-69 240
Msa0437590 AT5G28530.3 28.051 631 401 15 43 635 55 670 3.59e-68 238
Msa0437590 AT5G28530.2 28.051 631 401 15 43 635 55 670 3.59e-68 238
Msa0437590 AT1G10240.2 26.953 653 418 18 27 636 25 661 5.81e-61 218
Msa0437590 AT1G10240.1 26.953 653 418 18 27 636 25 661 5.81e-61 218
Msa0437590 AT5G28530.4 24.487 633 362 18 43 635 55 611 1.06e-40 159
Msa0437590 AT5G28530.5 24.483 629 363 19 43 635 55 607 7.48e-40 156
Msa0437590 AT3G59470.3 39.450 109 62 2 42 149 69 174 1.12e-20 92.8
Msa0437590 AT3G59470.1 39.450 109 62 2 42 149 69 174 1.12e-20 92.8
Msa0437590 AT3G59470.2 39.450 109 62 2 42 149 81 186 1.69e-20 92.4
Msa0437590 AT3G07500.1 38.318 107 63 2 41 146 31 135 7.96e-16 77.8
Msa0437590 AT2G43280.1 32.308 130 83 4 27 153 6 133 1.27e-15 76.6
Msa0437590 AT4G12850.2 36.190 105 61 2 42 145 10 109 2.25e-15 73.9
Msa0437590 AT4G12850.4 36.190 105 61 2 42 145 10 109 2.43e-15 73.9
Msa0437590 AT4G12850.1 36.190 105 61 2 42 145 10 109 2.56e-15 75.5
Msa0437590 AT2G43280.2 33.333 99 61 4 58 153 2 98 2.43e-11 63.5

Find 131 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTCTGCGATAAATATT+TGG 0.081853 3_3:+1457992 None:intergenic
AGAATGGCTTACAAATATTT+TGG 0.184037 3_3:-1458775 Msa0437590:CDS
TTGGCAAAATTATCCCTTAT+TGG 0.203695 3_3:+1457009 None:intergenic
GATTTCTCTGATGTGATTCT+AGG 0.204971 3_3:-1456972 Msa0437590:exon
TGTAATTCTGGCGTGATTTC+AGG 0.211278 3_3:-1456942 Msa0437590:three_prime_UTR
TTATACACCTTTACTATAAA+TGG 0.221327 3_3:+1456582 None:intergenic
TGTTGTTTGCTGAATGTTAT+TGG 0.222041 3_3:-1456658 Msa0437590:three_prime_UTR
TTCATTATTTAATAGTATTA+TGG 0.222727 3_3:-1457677 Msa0437590:CDS
GTAAATTAGCAAATTGCTTT+TGG 0.235893 3_3:-1458813 Msa0437590:CDS
CTAGGCTTTGGATGTAATTC+TGG 0.239700 3_3:-1456954 Msa0437590:three_prime_UTR
ATTGATGTGCTTCATGATTC+TGG 0.246659 3_3:-1459048 Msa0437590:CDS
CATTCCTTCAAAGGGCTCTA+AGG 0.261818 3_3:+1459431 None:intergenic
TATTCATACTTTCACTCCTT+TGG 0.266644 3_3:+1458234 None:intergenic
ATTCATACTTTCACTCCTTT+GGG 0.296462 3_3:+1458235 None:intergenic
CACTATGTTCATGATAGATT+TGG 0.302307 3_3:+1458446 None:intergenic
AAAGTGCGTGGACGACCTTT+AGG 0.302776 3_3:+1457448 None:intergenic
TCTGGCGTGATTTCAGGTTT+TGG 0.303109 3_3:-1456936 Msa0437590:three_prime_UTR
TTTATACAAGAAAAGTGTTT+AGG 0.307581 3_3:-1458041 Msa0437590:CDS
GTAAGGTACGCCAAGAAAAT+AGG 0.318570 3_3:-1459372 Msa0437590:CDS
GAAGATGTTGTGAACTTCTT+GGG 0.326122 3_3:+1459109 None:intergenic
TGAAAAGTCACATGATAGTT+AGG 0.326132 3_3:+1457913 None:intergenic
TCTGATGTGATTCTAGGCTT+TGG 0.327651 3_3:-1456966 Msa0437590:exon
CGAAGATGTTGTGAACTTCT+TGG 0.330323 3_3:+1459108 None:intergenic
CTGATGACTTTGATTCTGAT+TGG 0.333619 3_3:-1458378 Msa0437590:CDS
AATAATTAGTAACATCTTGT+TGG 0.335314 3_3:+1458956 None:intergenic
TTTCTCTGCGATAAATATTT+GGG 0.341189 3_3:+1457993 None:intergenic
TGGAGGATCACACAAGTTTA+TGG 0.352054 3_3:+1457480 None:intergenic
TTATCCCTTATTGGCAAAAC+AGG 0.352844 3_3:+1457018 None:intergenic
AAGTGCGTGGACGACCTTTA+GGG 0.355019 3_3:+1457449 None:intergenic
TAGGTATTTATTTGTTAAGT+AGG 0.356351 3_3:+1458729 None:intergenic
ATGCCCTTTGTTCCATTCAC+TGG 0.364662 3_3:-1458706 Msa0437590:CDS
AAATCCACCACCTTTGGCTT+TGG 0.364975 3_3:+1456990 None:intergenic
TTTACGAATGAAAGGCAGTT+TGG 0.374955 3_3:-1457428 Msa0437590:CDS
TATTTATTTGTTAAGTAGGT+TGG 0.381728 3_3:+1458733 None:intergenic
GATTTATCAAACTCTTCATT+TGG 0.382353 3_3:+1457541 None:intergenic
TGATGACTTTGATTCTGATT+GGG 0.384063 3_3:-1458377 Msa0437590:CDS
TTGTCGCATGTTTGAGTTTG+TGG 0.384532 3_3:-1457863 Msa0437590:CDS
TGTATTAAATGTATTCATAA+AGG 0.391275 3_3:-1457824 Msa0437590:CDS
TACCTCTGGTGCGGCTGTGC+GGG 0.391811 3_3:-1456856 Msa0437590:three_prime_UTR
AATTGTCAGTTGAAGAATCC+TGG 0.396913 3_3:-1458868 Msa0437590:CDS
TCTTAGCATTTATGGTCCTT+CGG 0.397185 3_3:+1457764 None:intergenic
AGTCATCAGTAGTGATAGTT+TGG 0.400979 3_3:+1458392 None:intergenic
TCAGAGAAATCCACCACCTT+TGG 0.409488 3_3:+1456984 None:intergenic
GGGAAAATAGTACATGATTA+TGG 0.411615 3_3:+1459130 None:intergenic
AATCACAAAACTTGATCAAT+TGG 0.412422 3_3:-1457575 Msa0437590:CDS
TGAATGGAACAAAGGGCATT+AGG 0.418217 3_3:+1458710 None:intergenic
TTGTTTGGTTGCTACGTACT+TGG 0.423904 3_3:-1458615 Msa0437590:CDS
CGCACCAGAGGTACAAAAGC+TGG 0.431891 3_3:+1456866 None:intergenic
TGCATCAATTGAAGATGTAA+AGG 0.436857 3_3:-1459403 Msa0437590:CDS
GTGCTTCATGATTCTGGTAT+AGG 0.438869 3_3:-1459042 Msa0437590:CDS
ACTTTCACTCCTTTGGGTGG+TGG 0.440297 3_3:+1458241 None:intergenic
GGCTCTAAGGGGAGCTCTGA+TGG 0.445219 3_3:+1459444 None:intergenic
TACATCATCTGAGCCATTCA+TGG 0.452459 3_3:+1459509 None:intergenic
CATGAACATACCACCATGAA+TGG 0.455856 3_3:-1459522 Msa0437590:CDS
CTCCCCTTAGAGCCCTTTGA+AGG 0.456460 3_3:-1459435 Msa0437590:CDS
GGTTGATTCAAGGTCTAGAA+TGG 0.460592 3_3:-1458791 Msa0437590:CDS
TGTAGTTATTGCAACGGAAA+AGG 0.460720 3_3:-1457379 Msa0437590:CDS
ATATTGCAATTCAAGCTTTG+CGG 0.469966 3_3:-1457603 Msa0437590:CDS
CTTAGAGCCCTTTGAAGGAA+TGG 0.476103 3_3:-1459430 Msa0437590:CDS
TTTGCCAAAGCCAAAGGTGG+TGG 0.482208 3_3:-1456994 Msa0437590:CDS
AGAACGAATGGTATTGTGAT+TGG 0.484146 3_3:-1459315 Msa0437590:CDS
TGCAAACTCCATTCCTTCAA+AGG 0.485592 3_3:+1459422 None:intergenic
TGTCGCATGTTTGAGTTTGT+GGG 0.487042 3_3:-1457862 Msa0437590:CDS
ATTCCTTCAAAGGGCTCTAA+GGG 0.488264 3_3:+1459432 None:intergenic
TTTCTAGGAGGGGATCTGTT+CGG 0.498304 3_3:-1456805 Msa0437590:three_prime_UTR
ACGAGTTGCAAGATAACAAA+TGG 0.498356 3_3:-1458336 Msa0437590:CDS
ATTGTCAGTTGAAGAATCCT+GGG 0.500058 3_3:-1458867 Msa0437590:CDS
TAGATTTGGTTCAAGTACTC+TGG 0.502715 3_3:+1458460 None:intergenic
GTACCTCTGGTGCGGCTGTG+CGG 0.502898 3_3:-1456857 Msa0437590:three_prime_UTR
ATCAGTTGTAGTTATTGCAA+CGG 0.505066 3_3:-1457385 Msa0437590:CDS
TTTGAAGCCTCTTCTTCCAT+GGG 0.505212 3_3:+1458066 None:intergenic
TCAAGAGATTCTTTGTTCAA+AGG 0.507548 3_3:-1459292 Msa0437590:CDS
GCAAACTCCATTCCTTCAAA+GGG 0.507732 3_3:+1459423 None:intergenic
CAATAATGATGATTCACCTC+TGG 0.513933 3_3:+1458508 None:intergenic
AAACTCTGACGTACATAAGA+AGG 0.521777 3_3:+1458277 None:intergenic
CCTCCACGTGCGGTCCCTAA+AGG 0.522617 3_3:-1457463 Msa0437590:CDS
CATACTTTCACTCCTTTGGG+TGG 0.526942 3_3:+1458238 None:intergenic
AGTGGTGGTGTTGATAATGT+TGG 0.527691 3_3:-1458985 Msa0437590:CDS
TCTGCGTACTTTATATCCCA+TGG 0.529545 3_3:-1458082 Msa0437590:CDS
GATGACTTTGATTCTGATTG+GGG 0.531464 3_3:-1458376 Msa0437590:CDS
CTCAATATGTTCTAAGCCGA+AGG 0.531634 3_3:-1457780 Msa0437590:CDS
ACTCCAGTGAATGGAACAAA+GGG 0.535906 3_3:+1458703 None:intergenic
AATTTCATGAATCTTGTATG+TGG 0.536832 3_3:+1457948 None:intergenic
ACGTACTTGGTTAGAAGCAA+TGG 0.537041 3_3:-1458602 Msa0437590:CDS
TCTCTTGAACTATCTGAAAG+AGG 0.540310 3_3:-1457649 Msa0437590:CDS
AGAGATTCTTTGTTCAAAGG+AGG 0.541828 3_3:-1459289 Msa0437590:CDS
TTTATATCCCATGGAAGAAG+AGG 0.541904 3_3:-1458073 Msa0437590:CDS
TGAATCATCATTATTGTATG+TGG 0.542391 3_3:-1458501 Msa0437590:CDS
TTGGACATCTACGTTTGTTG+TGG 0.543214 3_3:+1457356 None:intergenic
GAGATTCTTTGTTCAAAGGA+GGG 0.548544 3_3:-1459288 Msa0437590:CDS
TATTTCTAATGCAGTTGCAA+AGG 0.550472 3_3:-1458536 Msa0437590:CDS
CGGCTTAGAACATATTGAGA+AGG 0.552806 3_3:+1457784 None:intergenic
ATTATCAACACCACCACTCT+CGG 0.553163 3_3:+1458990 None:intergenic
GTCTGGTCATCAGAGACTTT+AGG 0.557356 3_3:+1457502 None:intergenic
GATCACACAAGTTTATGGTC+TGG 0.557810 3_3:+1457485 None:intergenic
AAGATGTTGTGAACTTCTTG+GGG 0.560401 3_3:+1459110 None:intergenic
TTAAAGTAAAATGTTACAAG+AGG 0.562016 3_3:+1456691 None:intergenic
GGCTTAGAACATATTGAGAA+GGG 0.562660 3_3:+1457785 None:intergenic
TGCAATTCAAGCTTTGCGGA+AGG 0.564681 3_3:-1457599 Msa0437590:CDS
GCACCAGAGGTACAAAAGCT+GGG 0.568721 3_3:+1456867 None:intergenic
GTCCAAGTTTAAAACATGGA+AGG 0.582831 3_3:-1457339 Msa0437590:intron
AACTCCAGTGAATGGAACAA+AGG 0.585483 3_3:+1458702 None:intergenic
TGATGATTAACTCCAGTGAA+TGG 0.587906 3_3:+1458694 None:intergenic
TTAAAGTACACGATCAAACA+AGG 0.591318 3_3:-1459224 Msa0437590:CDS
GTTACTAAATCAAGAACGAA+TGG 0.594117 3_3:-1459327 Msa0437590:CDS
ATGTAAAGGATTACTACGTA+AGG 0.595028 3_3:-1459389 Msa0437590:CDS
GCATTTCAAATGGACGCAGA+AGG 0.597955 3_3:-1458835 Msa0437590:CDS
CCACGCACTTTACGAATGAA+AGG 0.600807 3_3:-1457436 Msa0437590:CDS
TCTAAGGGGAGCTCTGATGG+CGG 0.601475 3_3:+1459447 None:intergenic
GCAATTGAAGACCTCGAGGA+AGG 0.603885 3_3:-1457721 Msa0437590:CDS
CCTTTCATTCGTAAAGTGCG+TGG 0.604290 3_3:+1457436 None:intergenic
GGATATAAAGTACGCAGAAG+TGG 0.606925 3_3:+1458087 None:intergenic
GAGAGAAGAATGTCAAGACA+AGG 0.616684 3_3:-1458119 Msa0437590:CDS
CTTTGTTTCTGCCTTCCTCG+AGG 0.619887 3_3:+1457710 None:intergenic
CGACCTTTAGGGACCGCACG+TGG 0.624526 3_3:+1457460 None:intergenic
GTTTGTGATACAGTATGAGA+AGG 0.624921 3_3:-1458169 Msa0437590:intron
GACCCGCACAGCCGCACCAG+AGG 0.625833 3_3:+1456854 None:intergenic
GTACACGATCAAACAAGGGT+AGG 0.637469 3_3:-1459219 Msa0437590:CDS
CTGGAATGTCCACCACCCAA+AGG 0.639739 3_3:-1458250 Msa0437590:CDS
AGATGTCCAAGTTTAAAACA+TGG 0.643966 3_3:-1457343 Msa0437590:CDS
TCAGTGTTATGTACCGAGAG+TGG 0.652006 3_3:-1459003 Msa0437590:CDS
ACTTGGTTAGAAGCAATGGA+TGG 0.652582 3_3:-1458598 Msa0437590:CDS
TCTTGATGCACGTTATAACA+AGG 0.672143 3_3:-1458145 Msa0437590:CDS
TTCCTTCAAAGGGCTCTAAG+GGG 0.687755 3_3:+1459433 None:intergenic
AATAGATGGAAATTCACACC+AGG 0.694517 3_3:+1456906 None:intergenic
CCTTTAGGGACCGCACGTGG+AGG 0.703909 3_3:+1457463 None:intergenic
ATCATCTGAGCCATTCATGG+TGG 0.705037 3_3:+1459512 None:intergenic
AATTGCAATTGAAGACCTCG+AGG 0.709068 3_3:-1457725 Msa0437590:CDS
CTTGTGTGATCCTCCACGTG+CGG 0.710705 3_3:-1457473 Msa0437590:CDS
TAAAGTACACGATCAAACAA+GGG 0.712268 3_3:-1459223 Msa0437590:CDS
GTGTTATGTACCGAGAGTGG+TGG 0.716148 3_3:-1459000 Msa0437590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTATGAATAAATTTTTA+AGG - chr3_3:1457921-1457940 Msa0437590:CDS 10.0%
!!! AAGTATGAATAAATTTTTAA+GGG - chr3_3:1457922-1457941 Msa0437590:CDS 10.0%
!! TTCATTATTTAATAGTATTA+TGG - chr3_3:1458467-1458486 Msa0437590:CDS 10.0%
!!! TAACATTTTACTTTAATATA+AGG - chr3_3:1459460-1459479 Msa0437590:CDS 10.0%
!!! TTTTAGATCCAAAAAATATT+TGG - chr3_3:1456879-1456898 Msa0437590:three_prime_UTR 15.0%
!!! TTCTTTTTCCAAATATTTTT+TGG + chr3_3:1456890-1456909 None:intergenic 15.0%
!! AAATATTTGGAAAAAGAAAA+TGG - chr3_3:1456892-1456911 Msa0437590:three_prime_UTR 15.0%
!! TGTATTAAATGTATTCATAA+AGG - chr3_3:1458320-1458339 Msa0437590:CDS 15.0%
!! CTTGTAACAATAATATATTT+AGG + chr3_3:1459061-1459080 None:intergenic 15.0%
!!! AAAACTAAAACCTATTTTCT+TGG + chr3_3:1456785-1456804 None:intergenic 20.0%
!! AATAATTAGTAACATCTTGT+TGG + chr3_3:1457191-1457210 None:intergenic 20.0%
!! AGACAAAAACAATTAGAAAA+TGG - chr3_3:1457222-1457241 Msa0437590:intron 20.0%
!!! GTTTTTTTATGCATTTCAAA+TGG - chr3_3:1457299-1457318 Msa0437590:intron 20.0%
!!! TAAATTAGCAAATTGCTTTT+GGG - chr3_3:1457332-1457351 Msa0437590:intron 20.0%
!!! TATTTATTTGTTAAGTAGGT+TGG + chr3_3:1457414-1457433 None:intergenic 20.0%
!!! TAGGTATTTATTTGTTAAGT+AGG + chr3_3:1457418-1457437 None:intergenic 20.0%
!!! TTTATACAAGAAAAGTGTTT+AGG - chr3_3:1458103-1458122 Msa0437590:CDS 20.0%
!!! TTTTTCTTTCTTAGCATTTA+TGG + chr3_3:1458391-1458410 None:intergenic 20.0%
!! GCTAAGAAAGAAAAAAATAA+AGG - chr3_3:1458396-1458415 Msa0437590:CDS 20.0%
!!! CTTTTGTTGTTTTTCTTTTT+AGG - chr3_3:1459417-1459436 Msa0437590:CDS 20.0%
!! TTAAAGTAAAATGTTACAAG+AGG + chr3_3:1459456-1459475 None:intergenic 20.0%
! TACATCAAGAAAAATGAAGA+TGG - chr3_3:1456964-1456983 Msa0437590:three_prime_UTR 25.0%
!!! AATAAGTTTTTTTTGCACTG+GGG + chr3_3:1457079-1457098 None:intergenic 25.0%
!!! CAATAAGTTTTTTTTGCACT+GGG + chr3_3:1457080-1457099 None:intergenic 25.0%
!!! TCAATAAGTTTTTTTTGCAC+TGG + chr3_3:1457081-1457100 None:intergenic 25.0%
!! GTAAATTAGCAAATTGCTTT+TGG - chr3_3:1457331-1457350 Msa0437590:intron 25.0%
!! AGAATGGCTTACAAATATTT+TGG - chr3_3:1457369-1457388 Msa0437590:CDS 25.0%
!!! TTACAAATATTTTGGTGATG+TGG - chr3_3:1457377-1457396 Msa0437590:CDS 25.0%
!! TGATCAGTGATAATAGTTTT+AGG + chr3_3:1457579-1457598 None:intergenic 25.0%
! TGAATCATCATTATTGTATG+TGG - chr3_3:1457643-1457662 Msa0437590:CDS 25.0%
!!! AAAAGTGTTTAGGATTTTTC+AGG - chr3_3:1458113-1458132 Msa0437590:CDS 25.0%
! TTTCTCTGCGATAAATATTT+GGG + chr3_3:1458154-1458173 None:intergenic 25.0%
! AATTTCATGAATCTTGTATG+TGG + chr3_3:1458199-1458218 None:intergenic 25.0%
! AATCACAAAACTTGATCAAT+TGG - chr3_3:1458569-1458588 Msa0437590:CDS 25.0%
! GATTTATCAAACTCTTCATT+TGG + chr3_3:1458606-1458625 None:intergenic 25.0%
! GGTTTGTAACTAAATAAACT+TGG + chr3_3:1458893-1458912 None:intergenic 25.0%
!! AAAACTAGAAGCTTTAACAT+TGG + chr3_3:1458960-1458979 None:intergenic 25.0%
!!! TTCTAGTTTTGTTGATTAAG+AGG - chr3_3:1458970-1458989 Msa0437590:CDS 25.0%
! ATTCACACTAGAAAAATAGA+TGG + chr3_3:1459255-1459274 None:intergenic 25.0%
!!! GGTTTTGATATTTGATTTGT+AGG - chr3_3:1459360-1459379 Msa0437590:CDS 25.0%
TGCATCAATTGAAGATGTAA+AGG - chr3_3:1456741-1456760 Msa0437590:three_prime_UTR 30.0%
ATGTAAAGGATTACTACGTA+AGG - chr3_3:1456755-1456774 Msa0437590:three_prime_UTR 30.0%
!!! AATAGGTTTTAGTTTTCGCA+TGG - chr3_3:1456789-1456808 Msa0437590:three_prime_UTR 30.0%
!!! ATAGGTTTTAGTTTTCGCAT+GGG - chr3_3:1456790-1456809 Msa0437590:three_prime_UTR 30.0%
GTTACTAAATCAAGAACGAA+TGG - chr3_3:1456817-1456836 Msa0437590:three_prime_UTR 30.0%
TCAAGAGATTCTTTGTTCAA+AGG - chr3_3:1456852-1456871 Msa0437590:three_prime_UTR 30.0%
TTAAAGTACACGATCAAACA+AGG - chr3_3:1456920-1456939 Msa0437590:three_prime_UTR 30.0%
TAAAGTACACGATCAAACAA+GGG - chr3_3:1456921-1456940 Msa0437590:three_prime_UTR 30.0%
TCAAGAAAAATGAAGATGGA+TGG - chr3_3:1456968-1456987 Msa0437590:exon 30.0%
CAAGAAAAATGAAGATGGAT+GGG - chr3_3:1456969-1456988 Msa0437590:exon 30.0%
GGGAAAATAGTACATGATTA+TGG + chr3_3:1457017-1457036 None:intergenic 30.0%
!!! ACACTGATGCTATTTTACTA+GGG + chr3_3:1457128-1457147 None:intergenic 30.0%
!!! AACACTGATGCTATTTTACT+AGG + chr3_3:1457129-1457148 None:intergenic 30.0%
TGAAATGCATAAAAAAACCC+AGG + chr3_3:1457297-1457316 None:intergenic 30.0%
! AACCAAAAAGTATAGACTGT+TGG + chr3_3:1457476-1457495 None:intergenic 30.0%
!!! AAACTGAAGAGAGTTTTGTT+TGG - chr3_3:1457514-1457533 Msa0437590:CDS 30.0%
! TATTTCTAATGCAGTTGCAA+AGG - chr3_3:1457608-1457627 Msa0437590:CDS 30.0%
CACTATGTTCATGATAGATT+TGG + chr3_3:1457701-1457720 None:intergenic 30.0%
TGATGACTTTGATTCTGATT+GGG - chr3_3:1457767-1457786 Msa0437590:CDS 30.0%
TCTACTTCATTCGAGAAAAA+TGG - chr3_3:1457841-1457860 Msa0437590:CDS 30.0%
ATTCATACTTTCACTCCTTT+GGG + chr3_3:1457912-1457931 None:intergenic 30.0%
TATTCATACTTTCACTCCTT+TGG + chr3_3:1457913-1457932 None:intergenic 30.0%
TGTATCACAAACTTTCTCAA+TGG + chr3_3:1457967-1457986 None:intergenic 30.0%
CTTTCTCTGCGATAAATATT+TGG + chr3_3:1458155-1458174 None:intergenic 30.0%
TGAAAAGTCACATGATAGTT+AGG + chr3_3:1458234-1458253 None:intergenic 30.0%
ATATTGCAATTCAAGCTTTG+CGG - chr3_3:1458541-1458560 Msa0437590:CDS 30.0%
ATCAGTTGTAGTTATTGCAA+CGG - chr3_3:1458759-1458778 Msa0437590:CDS 30.0%
! AGATGTCCAAGTTTAAAACA+TGG - chr3_3:1458801-1458820 Msa0437590:CDS 30.0%
!! TACCTTCCATGTTTTAAACT+TGG + chr3_3:1458810-1458829 None:intergenic 30.0%
GTAACTAAATAAACTTGGCA+TGG + chr3_3:1458888-1458907 None:intergenic 30.0%
! GTTACAAACCAATGTCTTTT+AGG - chr3_3:1458903-1458922 Msa0437590:CDS 30.0%
ATATCACACCTAAAAGACAT+TGG + chr3_3:1458914-1458933 None:intergenic 30.0%
TTTAGGTGTGATATCATCAA+TGG - chr3_3:1458920-1458939 Msa0437590:CDS 30.0%
!! TACTGTTGTTATTGTTTTGC+TGG - chr3_3:1458993-1459012 Msa0437590:CDS 30.0%
CTAGTGTTAATTCCTAGTAT+TGG - chr3_3:1459092-1459111 Msa0437590:CDS 30.0%
TTGGCAAAATTATCCCTTAT+TGG + chr3_3:1459138-1459157 None:intergenic 30.0%
!!! CTATTTTAGTTTCAGCTAGT+TGG - chr3_3:1459388-1459407 Msa0437590:CDS 30.0%
! TGTTGTTTGCTGAATGTTAT+TGG - chr3_3:1459486-1459505 Msa0437590:CDS 30.0%
AGAACGAATGGTATTGTGAT+TGG - chr3_3:1456829-1456848 Msa0437590:three_prime_UTR 35.0%
AGAGATTCTTTGTTCAAAGG+AGG - chr3_3:1456855-1456874 Msa0437590:three_prime_UTR 35.0%
GAGATTCTTTGTTCAAAGGA+GGG - chr3_3:1456856-1456875 Msa0437590:three_prime_UTR 35.0%
AAGATGTTGTGAACTTCTTG+GGG + chr3_3:1457037-1457056 None:intergenic 35.0%
GAAGATGTTGTGAACTTCTT+GGG + chr3_3:1457038-1457057 None:intergenic 35.0%
ATTGATGTGCTTCATGATTC+TGG - chr3_3:1457096-1457115 Msa0437590:intron 35.0%
AATTGTCAGTTGAAGAATCC+TGG - chr3_3:1457276-1457295 Msa0437590:intron 35.0%
ATTGTCAGTTGAAGAATCCT+GGG - chr3_3:1457277-1457296 Msa0437590:intron 35.0%
!!! ATTGCTTTTGGGTTGATTCA+AGG - chr3_3:1457343-1457362 Msa0437590:CDS 35.0%
TGATGATTAACTCCAGTGAA+TGG + chr3_3:1457453-1457472 None:intergenic 35.0%
! CACCAACAGTCTATACTTTT+TGG - chr3_3:1457471-1457490 Msa0437590:CDS 35.0%
!!! TTTTTGGTTGTGCTCTGTTA+TGG - chr3_3:1457487-1457506 Msa0437590:CDS 35.0%
!! TTTTGGTTGTGCTCTGTTAT+GGG - chr3_3:1457488-1457507 Msa0437590:CDS 35.0%
CAATAATGATGATTCACCTC+TGG + chr3_3:1457639-1457658 None:intergenic 35.0%
! TAGATTTGGTTCAAGTACTC+TGG + chr3_3:1457687-1457706 None:intergenic 35.0%
AGTCATCAGTAGTGATAGTT+TGG + chr3_3:1457755-1457774 None:intergenic 35.0%
CTGATGACTTTGATTCTGAT+TGG - chr3_3:1457766-1457785 Msa0437590:CDS 35.0%
GATGACTTTGATTCTGATTG+GGG - chr3_3:1457768-1457787 Msa0437590:CDS 35.0%
ACGAGTTGCAAGATAACAAA+TGG - chr3_3:1457808-1457827 Msa0437590:CDS 35.0%
AAACTCTGACGTACATAAGA+AGG + chr3_3:1457870-1457889 None:intergenic 35.0%
GTTTGTGATACAGTATGAGA+AGG - chr3_3:1457975-1457994 Msa0437590:CDS 35.0%
TCTTGATGCACGTTATAACA+AGG - chr3_3:1457999-1458018 Msa0437590:CDS 35.0%
TTTATATCCCATGGAAGAAG+AGG - chr3_3:1458071-1458090 Msa0437590:CDS 35.0%
!!! TAGGATTTTTCAGGATGAGT+TGG - chr3_3:1458122-1458141 Msa0437590:CDS 35.0%
!!! ATTTTTCAGGATGAGTTGGT+TGG - chr3_3:1458126-1458145 Msa0437590:CDS 35.0%
!!! TTTTTCAGGATGAGTTGGTT+GGG - chr3_3:1458127-1458146 Msa0437590:CDS 35.0%
GGCTTAGAACATATTGAGAA+GGG + chr3_3:1458362-1458381 None:intergenic 35.0%
TCTTAGCATTTATGGTCCTT+CGG + chr3_3:1458383-1458402 None:intergenic 35.0%
TCTCTTGAACTATCTGAAAG+AGG - chr3_3:1458495-1458514 Msa0437590:CDS 35.0%
TTTACGAATGAAAGGCAGTT+TGG - chr3_3:1458716-1458735 Msa0437590:CDS 35.0%
TGTAGTTATTGCAACGGAAA+AGG - chr3_3:1458765-1458784 Msa0437590:CDS 35.0%
! GTCCAAGTTTAAAACATGGA+AGG - chr3_3:1458805-1458824 Msa0437590:CDS 35.0%
TTATCCCTTATTGGCAAAAC+AGG + chr3_3:1459129-1459148 None:intergenic 35.0%
! GATAATTTTGCCAAAGCCAA+AGG - chr3_3:1459144-1459163 Msa0437590:CDS 35.0%
GATTTCTCTGATGTGATTCT+AGG - chr3_3:1459172-1459191 Msa0437590:CDS 35.0%
AATAGATGGAAATTCACACC+AGG + chr3_3:1459241-1459260 None:intergenic 35.0%
! CTTTTCAGCTTGTGTTTTCT+AGG - chr3_3:1459324-1459343 Msa0437590:CDS 35.0%
CATGAACATACCACCATGAA+TGG - chr3_3:1456622-1456641 Msa0437590:three_prime_UTR 40.0%
TACATCATCTGAGCCATTCA+TGG + chr3_3:1456638-1456657 None:intergenic 40.0%
! ATTCCTTCAAAGGGCTCTAA+GGG + chr3_3:1456715-1456734 None:intergenic 40.0%
GCAAACTCCATTCCTTCAAA+GGG + chr3_3:1456724-1456743 None:intergenic 40.0%
TGCAAACTCCATTCCTTCAA+AGG + chr3_3:1456725-1456744 None:intergenic 40.0%
GTAAGGTACGCCAAGAAAAT+AGG - chr3_3:1456772-1456791 Msa0437590:three_prime_UTR 40.0%
CGAAGATGTTGTGAACTTCT+TGG + chr3_3:1457039-1457058 None:intergenic 40.0%
GTGCTTCATGATTCTGGTAT+AGG - chr3_3:1457102-1457121 Msa0437590:intron 40.0%
ATTATCAACACCACCACTCT+CGG + chr3_3:1457157-1457176 None:intergenic 40.0%
!! AGTGGTGGTGTTGATAATGT+TGG - chr3_3:1457159-1457178 Msa0437590:intron 40.0%
! GGTTGATTCAAGGTCTAGAA+TGG - chr3_3:1457353-1457372 Msa0437590:CDS 40.0%
!! TGAATGGAACAAAGGGCATT+AGG + chr3_3:1457437-1457456 None:intergenic 40.0%
ACTCCAGTGAATGGAACAAA+GGG + chr3_3:1457444-1457463 None:intergenic 40.0%
AACTCCAGTGAATGGAACAA+AGG + chr3_3:1457445-1457464 None:intergenic 40.0%
TTGTTTGGTTGCTACGTACT+TGG - chr3_3:1457529-1457548 Msa0437590:CDS 40.0%
ACGTACTTGGTTAGAAGCAA+TGG - chr3_3:1457542-1457561 Msa0437590:CDS 40.0%
ACTTGGTTAGAAGCAATGGA+TGG - chr3_3:1457546-1457565 Msa0437590:CDS 40.0%
! AGTTGCAAAGGTTTTTCCAG+AGG - chr3_3:1457620-1457639 Msa0437590:CDS 40.0%
GAGAGAAGAATGTCAAGACA+AGG - chr3_3:1458025-1458044 Msa0437590:CDS 40.0%
GGATATAAAGTACGCAGAAG+TGG + chr3_3:1458060-1458079 None:intergenic 40.0%
TCTGCGTACTTTATATCCCA+TGG - chr3_3:1458062-1458081 Msa0437590:CDS 40.0%
! TTTGAAGCCTCTTCTTCCAT+GGG + chr3_3:1458081-1458100 None:intergenic 40.0%
!!! TTTTGAAGCCTCTTCTTCCA+TGG + chr3_3:1458082-1458101 None:intergenic 40.0%
! TTGTCGCATGTTTGAGTTTG+TGG - chr3_3:1458281-1458300 Msa0437590:CDS 40.0%
! TGTCGCATGTTTGAGTTTGT+GGG - chr3_3:1458282-1458301 Msa0437590:CDS 40.0%
CGGCTTAGAACATATTGAGA+AGG + chr3_3:1458363-1458382 None:intergenic 40.0%
! CTCAATATGTTCTAAGCCGA+AGG - chr3_3:1458364-1458383 Msa0437590:CDS 40.0%
AATTGCAATTGAAGACCTCG+AGG - chr3_3:1458419-1458438 Msa0437590:CDS 40.0%
GATCACACAAGTTTATGGTC+TGG + chr3_3:1458662-1458681 None:intergenic 40.0%
TGGAGGATCACACAAGTTTA+TGG + chr3_3:1458667-1458686 None:intergenic 40.0%
! TTGGACATCTACGTTTGTTG+TGG + chr3_3:1458791-1458810 None:intergenic 40.0%
GTCTGCAACAAACCAATACT+AGG + chr3_3:1459107-1459126 None:intergenic 40.0%
! CAGACCTGTTTTGCCAATAA+GGG - chr3_3:1459122-1459141 Msa0437590:CDS 40.0%
! AATTTTGCCAAAGCCAAAGG+TGG - chr3_3:1459147-1459166 Msa0437590:CDS 40.0%
TCTGATGTGATTCTAGGCTT+TGG - chr3_3:1459178-1459197 Msa0437590:CDS 40.0%
!! CTAGGCTTTGGATGTAATTC+TGG - chr3_3:1459190-1459209 Msa0437590:CDS 40.0%
TGTAATTCTGGCGTGATTTC+AGG - chr3_3:1459202-1459221 Msa0437590:CDS 40.0%
!!! GTGATTTCAGGTTTTGGATG+CGG - chr3_3:1459214-1459233 Msa0437590:CDS 40.0%
! TTCAGCTTGTGTTTTCTAGG+AGG - chr3_3:1459327-1459346 Msa0437590:CDS 40.0%
!! TCAGCTTGTGTTTTCTAGGA+GGG - chr3_3:1459328-1459347 Msa0437590:CDS 40.0%
ATCATCTGAGCCATTCATGG+TGG + chr3_3:1456635-1456654 None:intergenic 45.0%
!! TTCCTTCAAAGGGCTCTAAG+GGG + chr3_3:1456714-1456733 None:intergenic 45.0%
CATTCCTTCAAAGGGCTCTA+AGG + chr3_3:1456716-1456735 None:intergenic 45.0%
! CTTAGAGCCCTTTGAAGGAA+TGG - chr3_3:1456714-1456733 Msa0437590:three_prime_UTR 45.0%
GTACACGATCAAACAAGGGT+AGG - chr3_3:1456925-1456944 Msa0437590:three_prime_UTR 45.0%
TCAGTGTTATGTACCGAGAG+TGG - chr3_3:1457141-1457160 Msa0437590:intron 45.0%
GCATTTCAAATGGACGCAGA+AGG - chr3_3:1457309-1457328 Msa0437590:intron 45.0%
ATGCCCTTTGTTCCATTCAC+TGG - chr3_3:1457438-1457457 Msa0437590:CDS 45.0%
!! TGTACGTCAGAGTTTTGTGC+TGG - chr3_3:1457875-1457894 Msa0437590:CDS 45.0%
CATACTTTCACTCCTTTGGG+TGG + chr3_3:1457909-1457928 None:intergenic 45.0%
TGCAATTCAAGCTTTGCGGA+AGG - chr3_3:1458545-1458564 Msa0437590:CDS 45.0%
GTCTGGTCATCAGAGACTTT+AGG + chr3_3:1458645-1458664 None:intergenic 45.0%
CCTTTCATTCGTAAAGTGCG+TGG + chr3_3:1458711-1458730 None:intergenic 45.0%
CCACGCACTTTACGAATGAA+AGG - chr3_3:1458708-1458727 Msa0437590:CDS 45.0%
! GCAGACCTGTTTTGCCAATA+AGG - chr3_3:1459121-1459140 Msa0437590:CDS 45.0%
! AAATCCACCACCTTTGGCTT+TGG + chr3_3:1459157-1459176 None:intergenic 45.0%
TCAGAGAAATCCACCACCTT+TGG + chr3_3:1459163-1459182 None:intergenic 45.0%
!!! TCTGGCGTGATTTCAGGTTT+TGG - chr3_3:1459208-1459227 Msa0437590:CDS 45.0%
! TTTCCCAGCTTTTGTACCTC+TGG - chr3_3:1459274-1459293 Msa0437590:CDS 45.0%
!! CAGCTTGTGTTTTCTAGGAG+GGG - chr3_3:1459329-1459348 Msa0437590:CDS 45.0%
! TTTCTAGGAGGGGATCTGTT+CGG - chr3_3:1459339-1459358 Msa0437590:CDS 45.0%
GTGTTATGTACCGAGAGTGG+TGG - chr3_3:1457144-1457163 Msa0437590:intron 50.0%
ACTTTCACTCCTTTGGGTGG+TGG + chr3_3:1457906-1457925 None:intergenic 50.0%
GCAATTGAAGACCTCGAGGA+AGG - chr3_3:1458423-1458442 Msa0437590:CDS 50.0%
!! CTTTGTTTCTGCCTTCCTCG+AGG + chr3_3:1458437-1458456 None:intergenic 50.0%
AAGTGCGTGGACGACCTTTA+GGG + chr3_3:1458698-1458717 None:intergenic 50.0%
AAAGTGCGTGGACGACCTTT+AGG + chr3_3:1458699-1458718 None:intergenic 50.0%
TTTGCCAAAGCCAAAGGTGG+TGG - chr3_3:1459150-1459169 Msa0437590:CDS 50.0%
! GCACCAGAGGTACAAAAGCT+GGG + chr3_3:1459280-1459299 None:intergenic 50.0%
! CAGCTTTTGTACCTCTGGTG+CGG - chr3_3:1459279-1459298 Msa0437590:CDS 50.0%
! TCTAAGGGGAGCTCTGATGG+CGG + chr3_3:1456700-1456719 None:intergenic 55.0%
CTCCCCTTAGAGCCCTTTGA+AGG - chr3_3:1456709-1456728 Msa0437590:three_prime_UTR 55.0%
CTGGAATGTCCACCACCCAA+AGG - chr3_3:1457894-1457913 Msa0437590:CDS 55.0%
CTTGTGTGATCCTCCACGTG+CGG - chr3_3:1458671-1458690 Msa0437590:CDS 55.0%
!!! TCAGGTTTTGGATGCGGTCC+TGG - chr3_3:1459220-1459239 Msa0437590:CDS 55.0%
! CGCACCAGAGGTACAAAAGC+TGG + chr3_3:1459281-1459300 None:intergenic 55.0%
!! GGCTCTAAGGGGAGCTCTGA+TGG + chr3_3:1456703-1456722 None:intergenic 60.0%
! CCTTTAGGGACCGCACGTGG+AGG + chr3_3:1458684-1458703 None:intergenic 65.0%
CCTCCACGTGCGGTCCCTAA+AGG - chr3_3:1458681-1458700 Msa0437590:CDS 65.0%
! CGACCTTTAGGGACCGCACG+TGG + chr3_3:1458687-1458706 None:intergenic 65.0%
GTACCTCTGGTGCGGCTGTG+CGG - chr3_3:1459287-1459306 Msa0437590:CDS 65.0%
TACCTCTGGTGCGGCTGTGC+GGG - chr3_3:1459288-1459307 Msa0437590:CDS 65.0%
GACCCGCACAGCCGCACCAG+AGG + chr3_3:1459293-1459312 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 1456595 1459571 1456595 ID=Msa0437590;Name=Msa0437590
chr3_3 mRNA 1456595 1459571 1456595 ID=Msa0437590-mRNA-1;Parent=Msa0437590;Name=Msa0437590-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.33|1|1|1|3|389|741
chr3_3 exon 1456595 1457041 1456595 ID=Msa0437590-mRNA-1:exon:142;Parent=Msa0437590-mRNA-1
chr3_3 exon 1457340 1458178 1457340 ID=Msa0437590-mRNA-1:exon:141;Parent=Msa0437590-mRNA-1
chr3_3 exon 1458243 1459571 1458243 ID=Msa0437590-mRNA-1:exon:140;Parent=Msa0437590-mRNA-1
chr3_3 CDS 1458243 1459571 1458243 ID=Msa0437590-mRNA-1:cds;Parent=Msa0437590-mRNA-1
chr3_3 CDS 1457340 1458178 1457340 ID=Msa0437590-mRNA-1:cds;Parent=Msa0437590-mRNA-1
chr3_3 CDS 1456984 1457041 1456984 ID=Msa0437590-mRNA-1:cds;Parent=Msa0437590-mRNA-1
chr3_3 three_prime_UTR 1456595 1456983 1456595 ID=Msa0437590-mRNA-1:three_prime_utr;Parent=Msa0437590-mRNA-1
Gene Sequence

>Msa0437590

ATGACTGATCAAGAAATGACAGATATGCATGAACATACCACCATGAATGGCTCAGATGATGTACTTGCAAATGCTATTGATGCAGACTCTCTCAATGATAGACCGCCATCAGAGCTCCCCTTAGAGCCCTTTGAAGGAATGGAGTTTGCATCAATTGAAGATGTAAAGGATTACTACGTAAGGTACGCCAAGAAAATAGGTTTTAGTTTTCGCATGGGTCGTGTTACTAAATCAAGAACGAATGGTATTGTGATTGGTCAAGAGATTCTTTGTTCAAAGGAGGGTTTTAGATCCAAAAAATATTTGGAAAAAGAAAATGGTAGTCTTAAAGTACACGATCAAACAAGGGTAGGATGCAAGTCAATGTTGTACATCAAGAAAAATGAAGATGGATGGGTTGTTTCTAGATTTGTAAGAGACCATAATCATGTACTATTTTCCCCAAGAAGTTCACAACATCTTCGAGTACATAGAAAGAAAACCCCAGTGCAAAAAAAACTTATTGATGTGCTTCATGATTCTGGTATAGGCCCTAGTAAAATAGCATCAGTGTTATGTACCGAGAGTGGTGGTGTTGATAATGTTGGATTTAGCCAACAAGATGTTACTAATTATTTAAGTGTAAAGAGACAAAAACAATTAGAAAATGGAGATGCTCACTTGATGTTATCGTACTTTAAGAATTGTCAGTTGAAGAATCCTGGGTTTTTTTATGCATTTCAAATGGACGCAGAAGGTAAATTAGCAAATTGCTTTTGGGTTGATTCAAGGTCTAGAATGGCTTACAAATATTTTGGTGATGTGGTGACTTTTGATCCAACCTACTTAACAAATAAATACCTAATGCCCTTTGTTCCATTCACTGGAGTTAATCATCACCAACAGTCTATACTTTTTGGTTGTGCTCTGTTATGGGATGAAACTGAAGAGAGTTTTGTTTGGTTGCTACGTACTTGGTTAGAAGCAATGGATGGAGTTAGTCCTAAAACTATTATCACTGATCAAGACACTTCTATTTCTAATGCAGTTGCAAAGGTTTTTCCAGAGGTGAATCATCATTATTGTATGTGGCATATTGAGAAGAAAGTTCCAGAGTACTTGAACCAAATCTATCATGAACATAGTGAGTTTAAAAATCAATTTCACAAGTGCATTCACCAAACTATCACTACTGATGACTTTGATTCTGATTGGGGAGCAATGATAGATAAGTACGAGTTGCAAGATAACAAATGGCTAAAGAAGATCTACTTCATTCGAGAAAAATGGATTCCTTCTTATGTACGTCAGAGTTTTGTGCTGGAATGTCCACCACCCAAAGGAGTGAAATATGAGAAGGCTCTTGATGCACGTTATAACAAGGAAAGAGAGAAGAATGTCAAGACAAGGAATTCAAAACCACTTCTGCGTACTTTATATCCCATGGAAGAAGAGGCTTCAAAAATTTATACAAGAAAAGTGTTTAGGATTTTTCAGGATGAGTTGGTTGGGTCCCAAATATTTATCGCAGAGAAAGTTAAGTTTTTTGATGAAGTTTCCACATACAAGATTCATGAAATTTACAAAGAAAAACCTAACTATCATGTGACTTTTCAGAACATTTCAAAAGAAGCAAAATGTAGTTGTCGCATGTTTGAGTTTGTGGGAATTCTCTGTAGACATGTATTAAATGTATTCATAAAGGAAAATGTCTATTCTCTCCCTTCTCAATATGTTCTAAGCCGAAGGACCATAAATGCTAAGAAAGAAAAAAATAAAGGAATTGCAATTGAAGACCTCGAGGAAGGCAGAAACAAAGCTTCAAGTACTTCATTATTTAATAGTATTATGGTTGAGTCTCTTGAACTATCTGAAAGAGGTTCACGATCAGAAAAGCATCATGATATTGCAATTCAAGCTTTGCGGAAGGCAATCACAAAACTTGATCAATTGGATCTTGAAGAACCAAATGAAGAGTTTGATAAATCGACATTTGAAGTTATGCCTAAAGTCTCTGATGACCAGACCATAAACTTGTGTGATCCTCCACGTGCGGTCCCTAAAGGTCGTCCACGCACTTTACGAATGAAAGGCAGTTTGGAATTGCACAAGAAAAATTCAATCAGTTGTAGTTATTGCAACGGAAAAGGCCACAACAAACGTAGATGTCCAAGTTTAAAACATGGAAGACCTGTTTTGCCAATAAGGGATAATTTTGCCAAAGCCAAAGGTGGTGGATTTCTCTGA
Protein sequence

>Msa0437590

MTDQEMTDMHEHTTMNGSDDVLANAIDADSLNDRPPSELPLEPFEGMEFASIEDVKDYYVRYAKKIGFSFRMGRVTKSRTNGIVIGQEILCSKEGFRSKKYLEKENGSLKVHDQTRVGCKSMLYIKKNEDGWVVSRFVRDHNHVLFSPRSSQHLRVHRKKTPVQKKLIDVLHDSGIGPSKIASVLCTESGGVDNVGFSQQDVTNYLSVKRQKQLENGDAHLMLSYFKNCQLKNPGFFYAFQMDAEGKLANCFWVDSRSRMAYKYFGDVVTFDPTYLTNKYLMPFVPFTGVNHHQQSILFGCALLWDETEESFVWLLRTWLEAMDGVSPKTIITDQDTSISNAVAKVFPEVNHHYCMWHIEKKVPEYLNQIYHEHSEFKNQFHKCIHQTITTDDFDSDWGAMIDKYELQDNKWLKKIYFIREKWIPSYVRQSFVLECPPPKGVKYEKALDARYNKEREKNVKTRNSKPLLRTLYPMEEEASKIYTRKVFRIFQDELVGSQIFIAEKVKFFDEVSTYKIHEIYKEKPNYHVTFQNISKEAKCSCRMFEFVGILCRHVLNVFIKENVYSLPSQYVLSRRTINAKKEKNKGIAIEDLEEGRNKASSTSLFNSIMVESLELSERGSRSEKHHDIAIQALRKAITKLDQLDLEEPNEEFDKSTFEVMPKVSDDQTINLCDPPRAVPKGRPRTLRMKGSLELHKKNSISCSYCNGKGHNKRRCPSLKHGRPVLPIRDNFAKAKGGGFL*