Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413900 | GAU27269.1 | 95.745 | 188 | 8 | 0 | 1 | 188 | 1 | 188 | 3.57e-129 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413900 | sp|Q96S44|PRPK_HUMAN | 47.059 | 170 | 87 | 2 | 22 | 188 | 84 | 253 | 1.63e-43 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413900 | A0A2Z6N6S3 | 95.745 | 188 | 8 | 0 | 1 | 188 | 1 | 188 | 1.71e-129 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0413900 | Msa0505500 | 0.863660 | 2.123910e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413900 | MtrunA17_Chr3g0106561 | 79.204 | 226 | 9 | 1 | 1 | 188 | 1 | 226 | 1.16e-125 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413900 | AT5G26110.3 | 63.274 | 226 | 45 | 1 | 1 | 188 | 1 | 226 | 8.46e-99 | 285 |
| Msa0413900 | AT5G26110.1 | 63.274 | 226 | 45 | 1 | 1 | 188 | 1 | 226 | 8.46e-99 | 285 |
| Msa0413900 | AT5G26110.2 | 77.778 | 162 | 36 | 0 | 27 | 188 | 2 | 163 | 1.15e-94 | 272 |
Find 48 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAAGGAATTTGATATTA+TGG | 0.109939 | 3_2:-58821402 | Msa0413900:exon |
| AGGGACAAGCTCACAGTTTA+TGG | 0.229091 | 3_2:+58821662 | None:intergenic |
| ACATTGAAGGGTTAAATTAA+AGG | 0.232713 | 3_2:-58821417 | Msa0413900:five_prime_UTR |
| TTAAAGGAATTTGATATTAT+GGG | 0.293100 | 3_2:-58821401 | Msa0413900:exon |
| AAAGATGTATTTCTTAAATT+CGG | 0.317484 | 3_2:-58820286 | Msa0413900:CDS |
| CATGATGGTGGTCTTGTTCA+TGG | 0.350984 | 3_2:-58820193 | Msa0413900:CDS |
| GGCAAGATTGCATCTCAAAT+TGG | 0.384705 | 3_2:-58820235 | Msa0413900:CDS |
| GTGTAGGTTCTTATTGACTT+TGG | 0.438221 | 3_2:-58820012 | Msa0413900:intron |
| TGAATTTGTCGATGGACCTT+CGG | 0.444921 | 3_2:-58820311 | Msa0413900:CDS |
| CAACTAAGGCAAAGCGACTT+GGG | 0.453324 | 3_2:-58820387 | Msa0413900:CDS |
| AAATCGACGGCTTTATCTTC+TGG | 0.462118 | 3_2:+58819967 | None:intergenic |
| ACCACTGTTTCGATGATTTG+CGG | 0.463118 | 3_2:+58819075 | None:intergenic |
| ACAACTAAGGCAAAGCGACT+TGG | 0.492516 | 3_2:-58820388 | Msa0413900:CDS |
| GGAAGCGAGGTGCACAACTA+AGG | 0.495691 | 3_2:-58820401 | Msa0413900:CDS |
| TAAAGGAATTTGATATTATG+GGG | 0.522816 | 3_2:-58821400 | Msa0413900:exon |
| AAAGAATGATACTGATCAGT+TGG | 0.526434 | 3_2:-58820143 | Msa0413900:intron |
| TTAACATTTGAATTTGTCGA+TGG | 0.536270 | 3_2:-58820319 | Msa0413900:CDS |
| TACCCCTGTGTTATATGCTG+TGG | 0.540309 | 3_2:-58820359 | Msa0413900:CDS |
| GTTTCGATGCATTCTTCATG+TGG | 0.542927 | 3_2:-58819922 | Msa0413900:CDS |
| ATGAAGAATGCATCGAAACA+AGG | 0.554852 | 3_2:+58819926 | None:intergenic |
| TATCTACGTCAATGGTTCAA+AGG | 0.557312 | 3_2:-58818716 | None:intergenic |
| GTCTGCAAGCTTGTTCATTG+TGG | 0.559060 | 3_2:+58819049 | None:intergenic |
| TTCTAAAACATACAAATCGA+CGG | 0.561624 | 3_2:+58819954 | None:intergenic |
| AGAAATACATCTTTGACCGA+AGG | 0.562229 | 3_2:+58820295 | None:intergenic |
| AATGTTAAAGTGTGCAACAC+AGG | 0.565875 | 3_2:+58820334 | None:intergenic |
| GGACGAAAGAGGACCATGGT+TGG | 0.570787 | 3_2:-58818931 | Msa0413900:CDS |
| GGCATCAATGAAGAGCGGTT+AGG | 0.584596 | 3_2:-58820256 | Msa0413900:CDS |
| TGCGACAAAGAGGACGAAAG+AGG | 0.603308 | 3_2:-58818942 | Msa0413900:CDS |
| AAGCTCACAGTTTATGGCGG+CGG | 0.606297 | 3_2:+58821668 | None:intergenic |
| TTGTTTGATGAGAATGAGAG+AGG | 0.606756 | 3_2:+58821355 | None:intergenic |
| GGATCCACAGCATATAACAC+AGG | 0.609862 | 3_2:+58820355 | None:intergenic |
| AACTAAGGCAAAGCGACTTG+GGG | 0.614384 | 3_2:-58820386 | Msa0413900:CDS |
| TTTCTTAAATTCGGATCACG+TGG | 0.627527 | 3_2:-58820277 | Msa0413900:CDS |
| TGAAGAATGCATCGAAACAA+GGG | 0.628508 | 3_2:+58819927 | None:intergenic |
| GATCCACAGCATATAACACA+GGG | 0.645198 | 3_2:+58820356 | None:intergenic |
| CAACTTGTAGTGCGACAAAG+AGG | 0.647624 | 3_2:-58818952 | Msa0413900:intron |
| TGCAGAAAAGAAAACACAGA+AGG | 0.648524 | 3_2:+58821712 | None:intergenic |
| ACAATGAACAAGCTTGCAGA+CGG | 0.653580 | 3_2:-58819047 | Msa0413900:intron |
| GCATTCTTCATGTGGTAATG+TGG | 0.655251 | 3_2:-58819914 | Msa0413900:intron |
| TCTCTCATTCTCATCAAACA+AGG | 0.656080 | 3_2:-58821353 | Msa0413900:CDS |
| GACAAGCTCACAGTTTATGG+CGG | 0.675226 | 3_2:+58821665 | None:intergenic |
| CACGTGGCATCAATGAAGAG+CGG | 0.687887 | 3_2:-58820261 | Msa0413900:CDS |
| ACCGCAAATCATCGAAACAG+TGG | 0.688110 | 3_2:-58819076 | Msa0413900:CDS |
| GTAATTGCAAAGTTACATGA+TGG | 0.690873 | 3_2:-58820208 | Msa0413900:CDS |
| AACTCAGAATCATCCAACCA+TGG | 0.691341 | 3_2:+58818918 | None:intergenic |
| ATTGCAAAGTTACATGATGG+TGG | 0.700548 | 3_2:-58820205 | Msa0413900:CDS |
| AAGAGGACGAAAGAGGACCA+TGG | 0.717008 | 3_2:-58818935 | Msa0413900:CDS |
| ATCCACAGCATATAACACAG+GGG | 0.823142 | 3_2:+58820357 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr3_2:58820921-58820940 | Msa0413900:intron | 0.0% |
| !!! | TTTTTATATTTTACATTGAA+GGG | - | chr3_2:58819001-58819020 | Msa0413900:intron | 10.0% |
| !!! | AAATTGATTTTTTACATAAT+GGG | + | chr3_2:58819162-58819181 | None:intergenic | 10.0% |
| !!! | AAAATTGATTTTTTACATAA+TGG | + | chr3_2:58819163-58819182 | None:intergenic | 10.0% |
| !!! | TTAATTTAAAATTGATTCAT+GGG | - | chr3_2:58819214-58819233 | Msa0413900:intron | 10.0% |
| !!! | TTTTTATATTTGATTAAGTT+TGG | - | chr3_2:58819649-58819668 | Msa0413900:intron | 10.0% |
| !! | ATGTAATAAATATTAATTAC+AGG | + | chr3_2:58820335-58820354 | None:intergenic | 10.0% |
| !! | AATATTTATTACATTTACTT+AGG | - | chr3_2:58820341-58820360 | Msa0413900:CDS | 10.0% |
| !! | TAGTTGAAATACATAAAAAA+GGG | + | chr3_2:58818790-58818809 | None:intergenic | 15.0% |
| !! | ATAGTTGAAATACATAAAAA+AGG | + | chr3_2:58818791-58818810 | None:intergenic | 15.0% |
| !!! | CTTTTTATATTTTACATTGA+AGG | - | chr3_2:58819000-58819019 | Msa0413900:intron | 15.0% |
| !! | ATTAAAGGAATTTGATATTA+TGG | - | chr3_2:58819028-58819047 | Msa0413900:intron | 15.0% |
| !! | TTAAAGGAATTTGATATTAT+GGG | - | chr3_2:58819029-58819048 | Msa0413900:intron | 15.0% |
| !!! | GAATCAATTTTAAATTAACA+AGG | + | chr3_2:58819212-58819231 | None:intergenic | 15.0% |
| !!! | GTTAATTTAAAATTGATTCA+TGG | - | chr3_2:58819213-58819232 | Msa0413900:intron | 15.0% |
| !!! | ATTATTTTCATAAACTATCT+TGG | - | chr3_2:58819798-58819817 | Msa0413900:intron | 15.0% |
| !! | AAAGATGTATTTCTTAAATT+CGG | - | chr3_2:58820144-58820163 | Msa0413900:CDS | 15.0% |
| !! | TATTTAACACTATAACAATT+AGG | + | chr3_2:58820570-58820589 | None:intergenic | 15.0% |
| !! | ATATATATATATATATCCCA+TGG | + | chr3_2:58820917-58820936 | None:intergenic | 15.0% |
| !! | TTATATATACAGGTAAATAA+GGG | + | chr3_2:58821178-58821197 | None:intergenic | 15.0% |
| !! | CAATACTAAAAAATATTAGA+TGG | + | chr3_2:58821418-58821437 | None:intergenic | 15.0% |
| !! | AAATAGAGAAAATATTGTGA+TGG | + | chr3_2:58818888-58818907 | None:intergenic | 20.0% |
| !! | TAAAGGAATTTGATATTATG+GGG | - | chr3_2:58819030-58819049 | Msa0413900:intron | 20.0% |
| !! | TAAGTTTAATTCACACTTAT+TGG | - | chr3_2:58819111-58819130 | Msa0413900:intron | 20.0% |
| !! | TCACAAATAGTAAAAAATAG+CGG | + | chr3_2:58819408-58819427 | None:intergenic | 20.0% |
| !!! | ATTTGACTTTCTTTTATCTT+TGG | + | chr3_2:58819758-58819777 | None:intergenic | 20.0% |
| !!! | CATAATAATAAGAGTTTGTT+TGG | + | chr3_2:58819941-58819960 | None:intergenic | 20.0% |
| !! | TGTTATAGTGTTAAATACTA+AGG | - | chr3_2:58820573-58820592 | Msa0413900:intron | 20.0% |
| !! | AATACTAAGGATATAAAAAC+AGG | - | chr3_2:58820586-58820605 | Msa0413900:intron | 20.0% |
| !! | ATACTAAGGATATAAAAACA+GGG | - | chr3_2:58820587-58820606 | Msa0413900:intron | 20.0% |
| !!! | TTATCCTCTTAATGATTTTT+GGG | + | chr3_2:58820743-58820762 | None:intergenic | 20.0% |
| !!! | TTTATCCTCTTAATGATTTT+TGG | + | chr3_2:58820744-58820763 | None:intergenic | 20.0% |
| !! | AATTTCTAATAGTACAAAAC+AGG | + | chr3_2:58820782-58820801 | None:intergenic | 20.0% |
| !!! | AAATTTTGAACAAGAACTTT+AGG | - | chr3_2:58820831-58820850 | Msa0413900:intron | 20.0% |
| !!! | ATTTTAAACATCAATACCAT+GGG | - | chr3_2:58820898-58820917 | Msa0413900:intron | 20.0% |
| !!! | ATTGCATTTTTTATCTTACA+AGG | - | chr3_2:58821041-58821060 | Msa0413900:intron | 20.0% |
| !! | AAGTGACATATAATATGAAA+GGG | + | chr3_2:58821083-58821102 | None:intergenic | 20.0% |
| !! | AAAGTGACATATAATATGAA+AGG | + | chr3_2:58821084-58821103 | None:intergenic | 20.0% |
| !! | GTTATATATACAGGTAAATA+AGG | + | chr3_2:58821179-58821198 | None:intergenic | 20.0% |
| !!! | TTTTAACAATAGATAATGCA+AGG | - | chr3_2:58821211-58821230 | Msa0413900:intron | 20.0% |
| !!! | CTTTGTTATTTAAGAAAGAT+TGG | - | chr3_2:58821245-58821264 | Msa0413900:intron | 20.0% |
| !! | ATTGATTATTGAAATTTGTC+TGG | - | chr3_2:58821305-58821324 | Msa0413900:intron | 20.0% |
| ! | AATTGAAGTTGAACAAGTTT+GGG | + | chr3_2:58818961-58818980 | None:intergenic | 25.0% |
| ! | TAATTGAAGTTGAACAAGTT+TGG | + | chr3_2:58818962-58818981 | None:intergenic | 25.0% |
| ! | ACATTGAAGGGTTAAATTAA+AGG | - | chr3_2:58819013-58819032 | Msa0413900:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+CGG | - | chr3_2:58819346-58819365 | Msa0413900:intron | 25.0% |
| !! | AAACTATCTTGGATAGATTT+TGG | - | chr3_2:58819809-58819828 | Msa0413900:intron | 25.0% |
| ! | TGTATATAGTTATGTCTGAT+TGG | - | chr3_2:58819965-58819984 | Msa0413900:CDS | 25.0% |
| ! | TTAACATTTGAATTTGTCGA+TGG | - | chr3_2:58820111-58820130 | Msa0413900:intron | 25.0% |
| !!! | TTCTAAAACATACAAATCGA+CGG | + | chr3_2:58820479-58820498 | None:intergenic | 25.0% |
| ! | CTATAACAATTAGGACTATT+GGG | + | chr3_2:58820561-58820580 | None:intergenic | 25.0% |
| ! | ACTATAACAATTAGGACTAT+TGG | + | chr3_2:58820562-58820581 | None:intergenic | 25.0% |
| !! | GATTTTAAACATCAATACCA+TGG | - | chr3_2:58820897-58820916 | Msa0413900:intron | 25.0% |
| ! | TAAACAGTCTTTATTGCTTT+CGG | + | chr3_2:58820947-58820966 | None:intergenic | 25.0% |
| ! | AAAATGCAATCAAGTTCATT+TGG | + | chr3_2:58821031-58821050 | None:intergenic | 25.0% |
| !!! | ATATGTCACTTTTGTAATGT+CGG | - | chr3_2:58821092-58821111 | Msa0413900:intron | 25.0% |
| ! | ATATCACTAGAATATCAAGA+AGG | - | chr3_2:58821128-58821147 | Msa0413900:intron | 25.0% |
| ! | AATAAGGGTGATATTGAAAA+TGG | + | chr3_2:58821163-58821182 | None:intergenic | 25.0% |
| !! | TTTCGTCTTGTTATATATAC+AGG | + | chr3_2:58821188-58821207 | None:intergenic | 25.0% |
| !!! | TATTTTGATATCTACGTCAA+TGG | - | chr3_2:58821706-58821725 | Msa0413900:five_prime_UTR | 25.0% |
| GAAAATATTGTGATGGTTGA+AGG | + | chr3_2:58818881-58818900 | None:intergenic | 30.0% | |
| AAAGTTTCAGTCTTTCATTG+TGG | - | chr3_2:58819245-58819264 | Msa0413900:intron | 30.0% | |
| ! | TTCATTGTGGTAATGTTGTT+AGG | - | chr3_2:58819258-58819277 | Msa0413900:intron | 30.0% |
| CTATTTGTGATTGACAATAC+TGG | - | chr3_2:58819418-58819437 | Msa0413900:intron | 30.0% | |
| TTTGTGAACTTGAAGGAAAT+TGG | - | chr3_2:58819442-58819461 | Msa0413900:intron | 30.0% | |
| !!! | GTTTTTGAGACTTCTTTTGT+GGG | - | chr3_2:58819511-58819530 | Msa0413900:intron | 30.0% |
| TTATATTCGAGTGTATCTAG+TGG | + | chr3_2:58819912-58819931 | None:intergenic | 30.0% | |
| GTAATTGCAAAGTTACATGA+TGG | - | chr3_2:58820222-58820241 | Msa0413900:CDS | 30.0% | |
| AAAGAATGATACTGATCAGT+TGG | - | chr3_2:58820287-58820306 | Msa0413900:CDS | 30.0% | |
| !!! | ATTTTAGTTCTCCAAGTTCA+AGG | - | chr3_2:58820652-58820671 | Msa0413900:intron | 30.0% |
| TTGACCCAAAAATCATTAAG+AGG | - | chr3_2:58820736-58820755 | Msa0413900:intron | 30.0% | |
| !! | TTTTATAGTTTGTGCACTCA+AGG | - | chr3_2:58820800-58820819 | Msa0413900:intron | 30.0% |
| ATCATCAGCATTAGTACAAA+TGG | + | chr3_2:58820880-58820899 | None:intergenic | 30.0% | |
| GCAATAAAGACTGTTTATAC+TGG | - | chr3_2:58820950-58820969 | Msa0413900:intron | 30.0% | |
| ATCAAGTTCATTTGGTACAT+AGG | + | chr3_2:58821023-58821042 | None:intergenic | 30.0% | |
| GACATATAATATGAAAGGGA+TGG | + | chr3_2:58821079-58821098 | None:intergenic | 30.0% | |
| TTGAAATTTGTCTGGATAGA+TGG | - | chr3_2:58821313-58821332 | Msa0413900:intron | 30.0% | |
| CTACAAGTTGTGAAAATGTA+CGG | + | chr3_2:58821468-58821487 | None:intergenic | 30.0% | |
| !!! | CCTCTTTTTTTACTACAGTA+AGG | + | chr3_2:58821544-58821563 | None:intergenic | 30.0% |
| CCTTACTGTAGTAAAAAAAG+AGG | - | chr3_2:58821541-58821560 | Msa0413900:intron | 30.0% | |
| TGCAGAAAAGAAAACACAGA+AGG | + | chr3_2:58818721-58818740 | None:intergenic | 35.0% | |
| TTGTTTGATGAGAATGAGAG+AGG | + | chr3_2:58819078-58819097 | None:intergenic | 35.0% | |
| TCTCTCATTCTCATCAAACA+AGG | - | chr3_2:58819077-58819096 | Msa0413900:CDS | 35.0% | |
| !!! | TACTGGTTTTGTGAACTTGA+AGG | - | chr3_2:58819435-58819454 | Msa0413900:intron | 35.0% |
| !! | TTGTCTTCTTGTTGTTGTAG+AGG | - | chr3_2:58819488-58819507 | Msa0413900:intron | 35.0% |
| !! | TGTCTTCTTGTTGTTGTAGA+GGG | - | chr3_2:58819489-58819508 | Msa0413900:intron | 35.0% |
| !!! | GGTTTTTGAGACTTCTTTTG+TGG | - | chr3_2:58819510-58819529 | Msa0413900:intron | 35.0% |
| GTCAACTTAGCATCCAAAAT+CGG | + | chr3_2:58819583-58819602 | None:intergenic | 35.0% | |
| !! | TGATTAAGTTTGGCTCTGTT+TGG | - | chr3_2:58819659-58819678 | Msa0413900:intron | 35.0% |
| ! | TTGTTCTGCCAATTGGATTT+TGG | - | chr3_2:58820002-58820021 | Msa0413900:CDS | 35.0% |
| TTCCTACTCCAAAATCCAAT+TGG | + | chr3_2:58820013-58820032 | None:intergenic | 35.0% | |
| AATGTTAAAGTGTGCAACAC+AGG | + | chr3_2:58820099-58820118 | None:intergenic | 35.0% | |
| AGAAATACATCTTTGACCGA+AGG | + | chr3_2:58820138-58820157 | None:intergenic | 35.0% | |
| TTTCTTAAATTCGGATCACG+TGG | - | chr3_2:58820153-58820172 | Msa0413900:CDS | 35.0% | |
| ATTGCAAAGTTACATGATGG+TGG | - | chr3_2:58820225-58820244 | Msa0413900:CDS | 35.0% | |
| ! | CTGTGATGTGTATTTTGTGT+AGG | - | chr3_2:58820402-58820421 | Msa0413900:CDS | 35.0% |
| !! | GTGTAGGTTCTTATTGACTT+TGG | - | chr3_2:58820418-58820437 | Msa0413900:intron | 35.0% |
| TGAAGAATGCATCGAAACAA+GGG | + | chr3_2:58820506-58820525 | None:intergenic | 35.0% | |
| ATGAAGAATGCATCGAAACA+AGG | + | chr3_2:58820507-58820526 | None:intergenic | 35.0% | |
| CTATTGGGAAAATGAGAAGT+TGG | + | chr3_2:58820546-58820565 | None:intergenic | 35.0% | |
| AAAGTGTAAGACCTTGAACT+TGG | + | chr3_2:58820666-58820685 | None:intergenic | 35.0% | |
| ! | GCGTAACTGTTGCTTAATAA+TGG | + | chr3_2:58820997-58821016 | None:intergenic | 35.0% |
| AGTTCATTTGGTACATAGGA+AGG | + | chr3_2:58821019-58821038 | None:intergenic | 35.0% | |
| ! | TTTTTGTTACGCACGAAAGT+CGG | + | chr3_2:58821667-58821686 | None:intergenic | 35.0% |
| ACTCTATTGCAACAGAGAGA+AGG | + | chr3_2:58818817-58818836 | None:intergenic | 40.0% | |
| !! | GTGATGGTTGAAGGTTTTGA+GGG | + | chr3_2:58818872-58818891 | None:intergenic | 40.0% |
| ! | TGTGATGGTTGAAGGTTTTG+AGG | + | chr3_2:58818873-58818892 | None:intergenic | 40.0% |
| ! | AGACTTCTTTTGTGGGAAGA+AGG | - | chr3_2:58819518-58819537 | Msa0413900:intron | 40.0% |
| ! | GAAGTACAGACATCCGATTT+TGG | - | chr3_2:58819567-58819586 | Msa0413900:intron | 40.0% |
| ! | GAATGCTTTGTTCTGCCAAT+TGG | - | chr3_2:58819995-58820014 | Msa0413900:CDS | 40.0% |
| !!! | TGCCAATTGGATTTTGGAGT+AGG | - | chr3_2:58820008-58820027 | Msa0413900:CDS | 40.0% |
| ATCCACAGCATATAACACAG+GGG | + | chr3_2:58820076-58820095 | None:intergenic | 40.0% | |
| GATCCACAGCATATAACACA+GGG | + | chr3_2:58820077-58820096 | None:intergenic | 40.0% | |
| TGAATTTGTCGATGGACCTT+CGG | - | chr3_2:58820119-58820138 | Msa0413900:intron | 40.0% | |
| GGCAAGATTGCATCTCAAAT+TGG | - | chr3_2:58820195-58820214 | Msa0413900:CDS | 40.0% | |
| GGTGAGTTCATTCATCTCTT+AGG | - | chr3_2:58820308-58820327 | Msa0413900:CDS | 40.0% | |
| ! | AAATCGACGGCTTTATCTTC+TGG | + | chr3_2:58820466-58820485 | None:intergenic | 40.0% |
| GTTTCGATGCATTCTTCATG+TGG | - | chr3_2:58820508-58820527 | Msa0413900:intron | 40.0% | |
| ! | GCATTCTTCATGTGGTAATG+TGG | - | chr3_2:58820516-58820535 | Msa0413900:intron | 40.0% |
| AGGGTCTTACTTGTCTGTTA+TGG | - | chr3_2:58820606-58820625 | Msa0413900:intron | 40.0% | |
| TCTACACAAAAGTTGAGGGA+AGG | + | chr3_2:58820689-58820708 | None:intergenic | 40.0% | |
| ! | TTCCCTCAACTTTTGTGTAG+AGG | - | chr3_2:58820688-58820707 | Msa0413900:intron | 40.0% |
| AGCCTCTACACAAAAGTTGA+GGG | + | chr3_2:58820693-58820712 | None:intergenic | 40.0% | |
| TAGCCTCTACACAAAAGTTG+AGG | + | chr3_2:58820694-58820713 | None:intergenic | 40.0% | |
| ACCACTGTTTCGATGATTTG+CGG | + | chr3_2:58821358-58821377 | None:intergenic | 40.0% | |
| ACAATGAACAAGCTTGCAGA+CGG | - | chr3_2:58821383-58821402 | Msa0413900:CDS | 40.0% | |
| CAAGTTGTGAAAATGTACGG+AGG | + | chr3_2:58821465-58821484 | None:intergenic | 40.0% | |
| AACTCAGAATCATCCAACCA+TGG | + | chr3_2:58821515-58821534 | None:intergenic | 40.0% | |
| GACAAGCTCACAGTTTATGG+CGG | + | chr3_2:58818768-58818787 | None:intergenic | 45.0% | |
| AGGGACAAGCTCACAGTTTA+TGG | + | chr3_2:58818771-58818790 | None:intergenic | 45.0% | |
| GTTGTCAAATAGCGGCATTG+TGG | - | chr3_2:58819354-58819373 | Msa0413900:intron | 45.0% | |
| GGAAATTGGATCTGCGCTTA+TGG | - | chr3_2:58819456-58819475 | Msa0413900:intron | 45.0% | |
| GACACTCAAGCGCTTAAATG+CGG | - | chr3_2:58819600-58819619 | Msa0413900:intron | 45.0% | |
| ACAACTAAGGCAAAGCGACT+TGG | - | chr3_2:58820042-58820061 | Msa0413900:intron | 45.0% | |
| CAACTAAGGCAAAGCGACTT+GGG | - | chr3_2:58820043-58820062 | Msa0413900:intron | 45.0% | |
| AACTAAGGCAAAGCGACTTG+GGG | - | chr3_2:58820044-58820063 | Msa0413900:intron | 45.0% | |
| TACCCCTGTGTTATATGCTG+TGG | - | chr3_2:58820071-58820090 | Msa0413900:intron | 45.0% | |
| GGATCCACAGCATATAACAC+AGG | + | chr3_2:58820078-58820097 | None:intergenic | 45.0% | |
| !! | CATGATGGTGGTCTTGTTCA+TGG | - | chr3_2:58820237-58820256 | Msa0413900:CDS | 45.0% |
| ACCGCAAATCATCGAAACAG+TGG | - | chr3_2:58821354-58821373 | Msa0413900:CDS | 45.0% | |
| ! | GTCTGCAAGCTTGTTCATTG+TGG | + | chr3_2:58821384-58821403 | None:intergenic | 45.0% |
| CAACTTGTAGTGCGACAAAG+AGG | - | chr3_2:58821478-58821497 | Msa0413900:intron | 45.0% | |
| AAGCTCACAGTTTATGGCGG+CGG | + | chr3_2:58818765-58818784 | None:intergenic | 50.0% | |
| GCTATCGCAAACAGTCTGAC+AGG | - | chr3_2:58819878-58819897 | Msa0413900:intron | 50.0% | |
| !!! | GGATTTTGGAGTAGGAAGCG+AGG | - | chr3_2:58820016-58820035 | Msa0413900:intron | 50.0% |
| CACGTGGCATCAATGAAGAG+CGG | - | chr3_2:58820169-58820188 | Msa0413900:CDS | 50.0% | |
| GGCATCAATGAAGAGCGGTT+AGG | - | chr3_2:58820174-58820193 | Msa0413900:CDS | 50.0% | |
| TGCGACAAAGAGGACGAAAG+AGG | - | chr3_2:58821488-58821507 | Msa0413900:intron | 50.0% | |
| AAGAGGACGAAAGAGGACCA+TGG | - | chr3_2:58821495-58821514 | Msa0413900:intron | 50.0% | |
| GGAAGCGAGGTGCACAACTA+AGG | - | chr3_2:58820029-58820048 | Msa0413900:intron | 55.0% | |
| GGACGAAAGAGGACCATGGT+TGG | - | chr3_2:58821499-58821518 | Msa0413900:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 58818717 | 58821735 | 58818717 | ID=Msa0413900;Name=Msa0413900 |
| chr3_2 | mRNA | 58818717 | 58821735 | 58818717 | ID=Msa0413900-mRNA-1;Parent=Msa0413900;Name=Msa0413900-mRNA-1;_AED=0.20;_eAED=0.20;_QI=97|0.8|1|1|0.8|0.66|6|210|188 |
| chr3_2 | exon | 58818717 | 58818964 | 58818717 | ID=Msa0413900-mRNA-1:exon:12207;Parent=Msa0413900-mRNA-1 |
| chr3_2 | exon | 58819048 | 58819120 | 58819048 | ID=Msa0413900-mRNA-1:exon:12206;Parent=Msa0413900-mRNA-1 |
| chr3_2 | exon | 58819915 | 58820028 | 58819915 | ID=Msa0413900-mRNA-1:exon:12205;Parent=Msa0413900-mRNA-1 |
| chr3_2 | exon | 58820144 | 58820422 | 58820144 | ID=Msa0413900-mRNA-1:exon:12204;Parent=Msa0413900-mRNA-1 |
| chr3_2 | exon | 58821343 | 58821442 | 58821343 | ID=Msa0413900-mRNA-1:exon:12203;Parent=Msa0413900-mRNA-1 |
| chr3_2 | exon | 58821676 | 58821735 | 58821676 | ID=Msa0413900-mRNA-1:exon:12202;Parent=Msa0413900-mRNA-1 |
| chr3_2 | five_prime_UTR | 58821676 | 58821735 | 58821676 | ID=Msa0413900-mRNA-1:five_prime_utr;Parent=Msa0413900-mRNA-1 |
| chr3_2 | five_prime_UTR | 58821406 | 58821442 | 58821406 | ID=Msa0413900-mRNA-1:five_prime_utr;Parent=Msa0413900-mRNA-1 |
| chr3_2 | CDS | 58821343 | 58821405 | 58821343 | ID=Msa0413900-mRNA-1:cds;Parent=Msa0413900-mRNA-1 |
| chr3_2 | CDS | 58820144 | 58820422 | 58820144 | ID=Msa0413900-mRNA-1:cds;Parent=Msa0413900-mRNA-1 |
| chr3_2 | CDS | 58819915 | 58820028 | 58819915 | ID=Msa0413900-mRNA-1:cds;Parent=Msa0413900-mRNA-1 |
| chr3_2 | CDS | 58819048 | 58819120 | 58819048 | ID=Msa0413900-mRNA-1:cds;Parent=Msa0413900-mRNA-1 |
| chr3_2 | CDS | 58818927 | 58818964 | 58818927 | ID=Msa0413900-mRNA-1:cds;Parent=Msa0413900-mRNA-1 |
| chr3_2 | three_prime_UTR | 58818717 | 58818926 | 58818717 | ID=Msa0413900-mRNA-1:three_prime_utr;Parent=Msa0413900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
