Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505500 | XP_013460360.1 | 96.460 | 226 | 8 | 0 | 1 | 226 | 1 | 226 | 4.22e-160 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505500 | sp|Q96S44|PRPK_HUMAN | 49.091 | 220 | 109 | 2 | 10 | 226 | 34 | 253 | 4.45e-64 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505500 | I3SWE5 | 96.460 | 226 | 8 | 0 | 1 | 226 | 1 | 226 | 2.02e-160 | 452 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003780 | Msa0505500 | 0.809283 | 2.042776e-50 | -8.615850e-47 |
| Msa0413900 | Msa0505500 | 0.863660 | 2.123910e-64 | -8.615850e-47 |
| Msa0505500 | Msa1104140 | 0.812675 | 3.763298e-51 | -8.615850e-47 |
| Msa0505500 | Msa1126510 | 0.815337 | 9.734253e-52 | -8.615850e-47 |
| Msa0505500 | Msa1166860 | 0.840244 | 9.770118e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505500 | MtrunA17_Chr3g0106561 | 96.460 | 226 | 8 | 0 | 1 | 226 | 1 | 226 | 3.88e-164 | 452 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505500 | AT5G26110.3 | 78.761 | 226 | 48 | 0 | 1 | 226 | 1 | 226 | 7.84e-134 | 375 |
| Msa0505500 | AT5G26110.1 | 78.761 | 226 | 48 | 0 | 1 | 226 | 1 | 226 | 7.84e-134 | 375 |
| Msa0505500 | AT5G26110.2 | 79.012 | 162 | 34 | 0 | 65 | 226 | 2 | 163 | 7.13e-95 | 275 |
| Msa0505500 | AT1G08120.1 | 73.684 | 57 | 15 | 0 | 1 | 57 | 5 | 61 | 4.60e-22 | 87.0 |
Find 52 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAAGGAATTTGATATTA+TGG | 0.109939 | 3_4:-51058986 | Msa0505500:exon |
| AGGGACAAGCTCACAGTTTA+TGG | 0.229091 | 3_4:+51059246 | None:intergenic |
| ACATTGAAGGGTTAAATTAA+AGG | 0.232713 | 3_4:-51059001 | Msa0505500:five_prime_UTR |
| TTAAAGGAATTTGATATTAT+GGG | 0.293100 | 3_4:-51058985 | Msa0505500:exon |
| GAAGTACAGACATCCGATTT+TGG | 0.315543 | 3_4:-51058450 | Msa0505500:CDS |
| AAAGATGTATTTCTTGAATT+CGG | 0.327087 | 3_4:-51057873 | Msa0505500:CDS |
| CACGATGGTGGTCTTGTTCA+TGG | 0.374963 | 3_4:-51057780 | Msa0505500:CDS |
| GGCAAGATTGCATCTCAAAT+TGG | 0.384705 | 3_4:-51057822 | Msa0505500:CDS |
| CAACCAAGGCAAGGCGACTT+GGG | 0.419060 | 3_4:-51057974 | Msa0505500:CDS |
| GTGTAGGTTCTTATTGACTT+TGG | 0.438221 | 3_4:-51057600 | Msa0505500:intron |
| ACAACCAAGGCAAGGCGACT+TGG | 0.438223 | 3_4:-51057975 | Msa0505500:CDS |
| GTCAACTTAGCATCCAAAAT+CGG | 0.456518 | 3_4:+51058437 | None:intergenic |
| AAATCGACGGCTTTATCTTC+TGG | 0.462118 | 3_4:+51057555 | None:intergenic |
| ACCACTGTTTCGATGATTTG+CGG | 0.463118 | 3_4:+51056691 | None:intergenic |
| AACCCCAAGTCGCCTTGCCT+TGG | 0.476565 | 3_4:+51057971 | None:intergenic |
| TAAAGGAATTTGATATTATG+GGG | 0.522816 | 3_4:-51058984 | Msa0505500:exon |
| AAAGAATGATACTGATCAGT+TGG | 0.526434 | 3_4:-51057730 | Msa0505500:intron |
| TTAACATTTGAATTTGTCGA+TGG | 0.536270 | 3_4:-51057906 | Msa0505500:CDS |
| TACCCCTGTGTTATATGCTG+TGG | 0.540309 | 3_4:-51057946 | Msa0505500:CDS |
| GTTTCGATGCATTCTTCATG+TGG | 0.542927 | 3_4:-51057510 | Msa0505500:CDS |
| AGAAATACATCTTTGACTGA+AGG | 0.543009 | 3_4:+51057882 | None:intergenic |
| ATGAAGAATGCATCGAAACA+AGG | 0.554852 | 3_4:+51057514 | None:intergenic |
| TATCTACGTCAATGGTTCAA+AGG | 0.557312 | 3_4:-51056332 | None:intergenic |
| GTCTGCAAGCTTGTTCATTG+TGG | 0.559060 | 3_4:+51056665 | None:intergenic |
| TTCTAAAACATACAAATCGA+CGG | 0.561624 | 3_4:+51057542 | None:intergenic |
| AATGTTAAAGTGTGCAACAC+AGG | 0.565875 | 3_4:+51057921 | None:intergenic |
| TTTCTTGAATTCGGATCATG+TGG | 0.569490 | 3_4:-51057864 | Msa0505500:CDS |
| GGACGAAAGAGGACCATGGT+TGG | 0.570787 | 3_4:-51056547 | Msa0505500:CDS |
| GGCATCAATGAAGAGCGGTT+AGG | 0.593530 | 3_4:-51057843 | Msa0505500:CDS |
| CGAGGTGCACAACCAAGGCA+AGG | 0.594894 | 3_4:-51057983 | Msa0505500:CDS |
| AACCAAGGCAAGGCGACTTG+GGG | 0.602601 | 3_4:-51057973 | Msa0505500:CDS |
| TGCGACAAAGAGGACGAAAG+AGG | 0.603308 | 3_4:-51056558 | Msa0505500:CDS |
| AAGCTCACAGTTTATGGCGG+CGG | 0.606297 | 3_4:+51059252 | None:intergenic |
| TTGTTTGATGAGAATGAGAG+AGG | 0.606756 | 3_4:+51058939 | None:intergenic |
| GGATCCACAGCATATAACAC+AGG | 0.609862 | 3_4:+51057942 | None:intergenic |
| TGAAGAATGCATCGAAACAA+GGG | 0.628508 | 3_4:+51057515 | None:intergenic |
| GGAGGCGAGGTGCACAACCA+AGG | 0.637554 | 3_4:-51057988 | Msa0505500:CDS |
| GATCCACAGCATATAACACA+GGG | 0.645198 | 3_4:+51057943 | None:intergenic |
| CAACTTGTAGTGCGACAAAG+AGG | 0.647624 | 3_4:-51056568 | Msa0505500:intron |
| TGCAGAAAAGAAAACACAGA+AGG | 0.648524 | 3_4:+51059296 | None:intergenic |
| ACAATGAACAAGCTTGCAGA+CGG | 0.653580 | 3_4:-51056663 | Msa0505500:intron |
| ATTGCAAAGTTACACGATGG+TGG | 0.654578 | 3_4:-51057792 | Msa0505500:CDS |
| GCATTCTTCATGTGGTAATG+TGG | 0.655251 | 3_4:-51057502 | Msa0505500:intron |
| TCTCTCATTCTCATCAAACA+AGG | 0.656080 | 3_4:-51058937 | Msa0505500:CDS |
| GACACTCAAGCGCTTAAATG+CGG | 0.662510 | 3_4:-51058417 | Msa0505500:intron |
| GACAAGCTCACAGTTTATGG+CGG | 0.675226 | 3_4:+51059249 | None:intergenic |
| ACCGCAAATCATCGAAACAG+TGG | 0.688110 | 3_4:-51056692 | Msa0505500:CDS |
| AACTCAGAATCATCCAACCA+TGG | 0.691341 | 3_4:+51056534 | None:intergenic |
| CATGTGGCATCAATGAAGAG+CGG | 0.710732 | 3_4:-51057848 | Msa0505500:CDS |
| AAGAGGACGAAAGAGGACCA+TGG | 0.717008 | 3_4:-51056551 | Msa0505500:CDS |
| GTAATTGCAAAGTTACACGA+TGG | 0.807657 | 3_4:-51057795 | Msa0505500:CDS |
| ATCCACAGCATATAACACAG+GGG | 0.823142 | 3_4:+51057944 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATATTTTACATTGAA+GGG | - | chr3_4:51056617-51056636 | Msa0505500:intron | 10.0% |
| !!! | AAATTGATTTTTTACATAAT+GGG | + | chr3_4:51056778-51056797 | None:intergenic | 10.0% |
| !!! | AAAATTGATTTTTTACATAA+TGG | + | chr3_4:51056779-51056798 | None:intergenic | 10.0% |
| !!! | GAATCAATTTTAAATTAAAA+AGG | + | chr3_4:51056825-51056844 | None:intergenic | 10.0% |
| !!! | TTTAATTTAAAATTGATTCA+TGG | - | chr3_4:51056826-51056845 | Msa0505500:intron | 10.0% |
| !!! | TTAATTTAAAATTGATTCAT+GGG | - | chr3_4:51056827-51056846 | Msa0505500:intron | 10.0% |
| !!! | TTTTTATATTTGATTAAGTT+TGG | - | chr3_4:51057262-51057281 | Msa0505500:intron | 10.0% |
| !! | AATATTTATTACATTTACTT+AGG | - | chr3_4:51057954-51057973 | Msa0505500:CDS | 10.0% |
| !! | TAGTTGAAATACATAAAAAA+GGG | + | chr3_4:51056406-51056425 | None:intergenic | 15.0% |
| !! | ATAGTTGAAATACATAAAAA+AGG | + | chr3_4:51056407-51056426 | None:intergenic | 15.0% |
| !!! | CTTTTTATATTTTACATTGA+AGG | - | chr3_4:51056616-51056635 | Msa0505500:intron | 15.0% |
| !! | ATTAAAGGAATTTGATATTA+TGG | - | chr3_4:51056644-51056663 | Msa0505500:intron | 15.0% |
| !! | TTAAAGGAATTTGATATTAT+GGG | - | chr3_4:51056645-51056664 | Msa0505500:intron | 15.0% |
| !! | AATTTCTAATAGTATAAAAC+AGG | + | chr3_4:51058366-51058385 | None:intergenic | 15.0% |
| !! | ATATATATATATATATCCCA+TGG | + | chr3_4:51058501-51058520 | None:intergenic | 15.0% |
| !! | TTATATATACAGGTAAATAA+GGG | + | chr3_4:51058762-51058781 | None:intergenic | 15.0% |
| !! | CAATACTCAAAAATATTATA+TGG | + | chr3_4:51059002-51059021 | None:intergenic | 15.0% |
| !! | AAATAGAGAAAATATTGTGA+TGG | + | chr3_4:51056504-51056523 | None:intergenic | 20.0% |
| !! | TAAAGGAATTTGATATTATG+GGG | - | chr3_4:51056646-51056665 | Msa0505500:intron | 20.0% |
| !! | TCTCAAATAGTAAAAAATAG+CGG | + | chr3_4:51057021-51057040 | None:intergenic | 20.0% |
| !!! | ATTTGACTTTCTTTTATCTT+TGG | + | chr3_4:51057371-51057390 | None:intergenic | 20.0% |
| !!! | ATTATTTTCATAAGCTATCT+TGG | - | chr3_4:51057411-51057430 | Msa0505500:intron | 20.0% |
| !!! | CATAATAATAAGAGTTTGTT+TGG | + | chr3_4:51057554-51057573 | None:intergenic | 20.0% |
| !! | AAAGATGTATTTCTTGAATT+CGG | - | chr3_4:51057757-51057776 | Msa0505500:CDS | 20.0% |
| !!! | TTATCCTCTTAATGATTTTT+GGG | + | chr3_4:51058327-51058346 | None:intergenic | 20.0% |
| !!! | TTTATCCTCTTAATGATTTT+TGG | + | chr3_4:51058328-51058347 | None:intergenic | 20.0% |
| !!! | AAATTTTGAACAAGAACTTT+AGG | - | chr3_4:51058415-51058434 | Msa0505500:intron | 20.0% |
| !!! | ATTTTAAACATCAATACCAT+GGG | - | chr3_4:51058482-51058501 | Msa0505500:CDS | 20.0% |
| !!! | ATATTTCTAGAATATCAAGA+AGG | - | chr3_4:51058712-51058731 | Msa0505500:intron | 20.0% |
| !! | GTTATATATACAGGTAAATA+AGG | + | chr3_4:51058763-51058782 | None:intergenic | 20.0% |
| !!! | TTTTAACAATAGATAATGCA+AGG | - | chr3_4:51058795-51058814 | Msa0505500:intron | 20.0% |
| !!! | CTTTGTTATTTAAGAAAGAT+TGG | - | chr3_4:51058829-51058848 | Msa0505500:intron | 20.0% |
| !! | ATTGATTATTGAAATTTGTC+TGG | - | chr3_4:51058889-51058908 | Msa0505500:intron | 20.0% |
| ! | AATTGAAGTTGAACAAGTTT+GGG | + | chr3_4:51056577-51056596 | None:intergenic | 25.0% |
| ! | TAATTGAAGTTGAACAAGTT+TGG | + | chr3_4:51056578-51056597 | None:intergenic | 25.0% |
| ! | ACATTGAAGGGTTAAATTAA+AGG | - | chr3_4:51056629-51056648 | Msa0505500:intron | 25.0% |
| ! | TAAGTTTAATTCACACTCAT+TGG | - | chr3_4:51056727-51056746 | Msa0505500:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+CGG | - | chr3_4:51056959-51056978 | Msa0505500:intron | 25.0% |
| ! | TTAACATTTGAATTTGTCGA+TGG | - | chr3_4:51057724-51057743 | Msa0505500:intron | 25.0% |
| !!! | TTCTAAAACATACAAATCGA+CGG | + | chr3_4:51058091-51058110 | None:intergenic | 25.0% |
| ! | CTATAACAATTAGGACTATT+GGG | + | chr3_4:51058173-51058192 | None:intergenic | 25.0% |
| ! | ACTATAACAATTAGGACTAT+TGG | + | chr3_4:51058174-51058193 | None:intergenic | 25.0% |
| ! | CAAGTAACACTATAACAATT+AGG | + | chr3_4:51058182-51058201 | None:intergenic | 25.0% |
| !! | GATTTTAAACATCAATACCA+TGG | - | chr3_4:51058481-51058500 | Msa0505500:CDS | 25.0% |
| ! | TAAACAGTCTTTATTGCTTT+CGG | + | chr3_4:51058531-51058550 | None:intergenic | 25.0% |
| ! | AAAATGCAATCAAGTTCATT+TGG | + | chr3_4:51058615-51058634 | None:intergenic | 25.0% |
| !!! | ATTGCATTTTTTATCTGACA+AGG | - | chr3_4:51058625-51058644 | Msa0505500:intron | 25.0% |
| ! | AAGTGACATATAATATGAGA+GGG | + | chr3_4:51058667-51058686 | None:intergenic | 25.0% |
| ! | AAAGTGACATATAATATGAG+AGG | + | chr3_4:51058668-51058687 | None:intergenic | 25.0% |
| !!! | ATATGTCACTTTTGTAATGT+CGG | - | chr3_4:51058676-51058695 | Msa0505500:intron | 25.0% |
| ! | AATAAGGGTGATATTGAAAA+TGG | + | chr3_4:51058747-51058766 | None:intergenic | 25.0% |
| !! | TTTCGTCTTGTTATATATAC+AGG | + | chr3_4:51058772-51058791 | None:intergenic | 25.0% |
| !!! | TATTTTGATATCTACGTCAA+TGG | - | chr3_4:51059290-51059309 | Msa0505500:five_prime_UTR | 25.0% |
| GAAAATATTGTGATGGTTGA+AGG | + | chr3_4:51056497-51056516 | None:intergenic | 30.0% | |
| AAAGTTTCAGTCTTTCATTG+TGG | - | chr3_4:51056858-51056877 | Msa0505500:intron | 30.0% | |
| ! | TTCATTGTGGTAATGTTGTT+AGG | - | chr3_4:51056871-51056890 | Msa0505500:intron | 30.0% |
| ! | CTATTTGAGATTCACAATAC+TGG | - | chr3_4:51057031-51057050 | Msa0505500:intron | 30.0% |
| TTTGTGAACTTGAAGGAAAT+TGG | - | chr3_4:51057055-51057074 | Msa0505500:intron | 30.0% | |
| !!! | GTTTTTGAGACTTCTTTTGT+GGG | - | chr3_4:51057124-51057143 | Msa0505500:intron | 30.0% |
| ! | AAGCTATCTTGGATAGATTT+TGG | - | chr3_4:51057422-51057441 | Msa0505500:intron | 30.0% |
| TTATATTCGAGTGTATCTAG+TGG | + | chr3_4:51057525-51057544 | None:intergenic | 30.0% | |
| TGTATATAGTTGTGTCTGAT+TGG | - | chr3_4:51057578-51057597 | Msa0505500:CDS | 30.0% | |
| AGAAATACATCTTTGACTGA+AGG | + | chr3_4:51057751-51057770 | None:intergenic | 30.0% | |
| AAAGAATGATACTGATCAGT+TGG | - | chr3_4:51057900-51057919 | Msa0505500:CDS | 30.0% | |
| GAAAATTTGAATTGAAGTGC+AGG | - | chr3_4:51058210-51058229 | Msa0505500:intron | 30.0% | |
| !!! | ATTTTAGCTCTCCAAATTCA+AGG | - | chr3_4:51058236-51058255 | Msa0505500:intron | 30.0% |
| AAAGTGTAAGACCTTGAATT+TGG | + | chr3_4:51058250-51058269 | None:intergenic | 30.0% | |
| !! | TTTTATAGTTTGTGCACTCA+AGG | - | chr3_4:51058384-51058403 | Msa0505500:intron | 30.0% |
| ATCATCAGCATTAGTACAAA+TGG | + | chr3_4:51058464-51058483 | None:intergenic | 30.0% | |
| GCAATAAAGACTGTTTATAC+TGG | - | chr3_4:51058534-51058553 | Msa0505500:intron | 30.0% | |
| ATCAAGTTCATTTGGTACAT+AGG | + | chr3_4:51058607-51058626 | None:intergenic | 30.0% | |
| TTGAAATTTGTCTGGATAGA+TGG | - | chr3_4:51058897-51058916 | Msa0505500:intron | 30.0% | |
| CTACAAGTTGTGAAAATGTA+TGG | + | chr3_4:51059052-51059071 | None:intergenic | 30.0% | |
| !!! | CCTCTTTTTTTACTACAGTA+AGG | + | chr3_4:51059128-51059147 | None:intergenic | 30.0% |
| CCTTACTGTAGTAAAAAAAG+AGG | - | chr3_4:51059125-51059144 | Msa0505500:intron | 30.0% | |
| TGCAGAAAAGAAAACACAGA+AGG | + | chr3_4:51056337-51056356 | None:intergenic | 35.0% | |
| TTGTTTGATGAGAATGAGAG+AGG | + | chr3_4:51056694-51056713 | None:intergenic | 35.0% | |
| TCTCTCATTCTCATCAAACA+AGG | - | chr3_4:51056693-51056712 | Msa0505500:CDS | 35.0% | |
| !!! | TACTGGTTTTGTGAACTTGA+AGG | - | chr3_4:51057048-51057067 | Msa0505500:intron | 35.0% |
| !! | TTGTCTTCTTGTTGTTGTAG+AGG | - | chr3_4:51057101-51057120 | Msa0505500:intron | 35.0% |
| !! | TGTCTTCTTGTTGTTGTAGA+GGG | - | chr3_4:51057102-51057121 | Msa0505500:intron | 35.0% |
| !!! | GGTTTTTGAGACTTCTTTTG+TGG | - | chr3_4:51057123-51057142 | Msa0505500:intron | 35.0% |
| GTCAACTTAGCATCCAAAAT+CGG | + | chr3_4:51057196-51057215 | None:intergenic | 35.0% | |
| !! | TGATTAAGTTTGGCTCTGTT+TGG | - | chr3_4:51057272-51057291 | Msa0505500:intron | 35.0% |
| ! | TTGTTCTGCCAATTGGATTT+TGG | - | chr3_4:51057615-51057634 | Msa0505500:intron | 35.0% |
| AATGTTAAAGTGTGCAACAC+AGG | + | chr3_4:51057712-51057731 | None:intergenic | 35.0% | |
| TTTCTTGAATTCGGATCATG+TGG | - | chr3_4:51057766-51057785 | Msa0505500:CDS | 35.0% | |
| GTAATTGCAAAGTTACACGA+TGG | - | chr3_4:51057835-51057854 | Msa0505500:CDS | 35.0% | |
| ! | CTGTGATGTGTATTTTGTGT+AGG | - | chr3_4:51058014-51058033 | Msa0505500:intron | 35.0% |
| !! | GTGTAGGTTCTTATTGACTT+TGG | - | chr3_4:51058030-51058049 | Msa0505500:intron | 35.0% |
| TGAAGAATGCATCGAAACAA+GGG | + | chr3_4:51058118-51058137 | None:intergenic | 35.0% | |
| ATGAAGAATGCATCGAAACA+AGG | + | chr3_4:51058119-51058138 | None:intergenic | 35.0% | |
| CTATTGGGAAAATGAGAAGT+TGG | + | chr3_4:51058158-51058177 | None:intergenic | 35.0% | |
| TCGACCCAAAAATCATTAAG+AGG | - | chr3_4:51058320-51058339 | Msa0505500:intron | 35.0% | |
| ! | GCGTAACTGTTGCTTAATAA+TGG | + | chr3_4:51058581-51058600 | None:intergenic | 35.0% |
| AGTTCATTTGGTACATAGGA+AGG | + | chr3_4:51058603-51058622 | None:intergenic | 35.0% | |
| GACATATAATATGAGAGGGA+TGG | + | chr3_4:51058663-51058682 | None:intergenic | 35.0% | |
| CAAGTTGTGAAAATGTATGG+AGG | + | chr3_4:51059049-51059068 | None:intergenic | 35.0% | |
| ! | TTTTTGTTACGCACGAAAGT+CGG | + | chr3_4:51059251-51059270 | None:intergenic | 35.0% |
| ACTCTATTGCAACAGAGAGA+AGG | + | chr3_4:51056433-51056452 | None:intergenic | 40.0% | |
| !! | GTGATGGTTGAAGGTTTTGA+GGG | + | chr3_4:51056488-51056507 | None:intergenic | 40.0% |
| ! | TGTGATGGTTGAAGGTTTTG+AGG | + | chr3_4:51056489-51056508 | None:intergenic | 40.0% |
| ! | AGACTTCTTTTGTGGGAAGA+AGG | - | chr3_4:51057131-51057150 | Msa0505500:intron | 40.0% |
| ! | GAAGTACAGACATCCGATTT+TGG | - | chr3_4:51057180-51057199 | Msa0505500:intron | 40.0% |
| ! | GAATGCTTTGTTCTGCCAAT+TGG | - | chr3_4:51057608-51057627 | Msa0505500:intron | 40.0% |
| !!! | TGCCAATTGGATTTTGGAGT+AGG | - | chr3_4:51057621-51057640 | Msa0505500:intron | 40.0% |
| CTCCTACTCCAAAATCCAAT+TGG | + | chr3_4:51057626-51057645 | None:intergenic | 40.0% | |
| !!! | CAATTGGATTTTGGAGTAGG+AGG | - | chr3_4:51057624-51057643 | Msa0505500:intron | 40.0% |
| ATCCACAGCATATAACACAG+GGG | + | chr3_4:51057689-51057708 | None:intergenic | 40.0% | |
| GATCCACAGCATATAACACA+GGG | + | chr3_4:51057690-51057709 | None:intergenic | 40.0% | |
| GGCAAGATTGCATCTCAAAT+TGG | - | chr3_4:51057808-51057827 | Msa0505500:CDS | 40.0% | |
| ATTGCAAAGTTACACGATGG+TGG | - | chr3_4:51057838-51057857 | Msa0505500:CDS | 40.0% | |
| GGTGAGTTCATTCATCTCTT+AGG | - | chr3_4:51057921-51057940 | Msa0505500:CDS | 40.0% | |
| ! | AAATCGACGGCTTTATCTTC+TGG | + | chr3_4:51058078-51058097 | None:intergenic | 40.0% |
| GTTTCGATGCATTCTTCATG+TGG | - | chr3_4:51058120-51058139 | Msa0505500:intron | 40.0% | |
| ! | GCATTCTTCATGTGGTAATG+TGG | - | chr3_4:51058128-51058147 | Msa0505500:intron | 40.0% |
| TCTACACAAAAGTTGAGGGA+AGG | + | chr3_4:51058273-51058292 | None:intergenic | 40.0% | |
| ! | TTCCCTCAACTTTTGTGTAG+AGG | - | chr3_4:51058272-51058291 | Msa0505500:intron | 40.0% |
| AGCCTCTACACAAAAGTTGA+GGG | + | chr3_4:51058277-51058296 | None:intergenic | 40.0% | |
| TAGCCTCTACACAAAAGTTG+AGG | + | chr3_4:51058278-51058297 | None:intergenic | 40.0% | |
| ACCACTGTTTCGATGATTTG+CGG | + | chr3_4:51058942-51058961 | None:intergenic | 40.0% | |
| ACAATGAACAAGCTTGCAGA+CGG | - | chr3_4:51058967-51058986 | Msa0505500:CDS | 40.0% | |
| AACTCAGAATCATCCAACCA+TGG | + | chr3_4:51059099-51059118 | None:intergenic | 40.0% | |
| GACAAGCTCACAGTTTATGG+CGG | + | chr3_4:51056384-51056403 | None:intergenic | 45.0% | |
| AGGGACAAGCTCACAGTTTA+TGG | + | chr3_4:51056387-51056406 | None:intergenic | 45.0% | |
| GTTGTCAAATAGCGGCATTG+TGG | - | chr3_4:51056967-51056986 | Msa0505500:intron | 45.0% | |
| GGAAATTGGATCTGCGCTTA+TGG | - | chr3_4:51057069-51057088 | Msa0505500:intron | 45.0% | |
| GACACTCAAGCGCTTAAATG+CGG | - | chr3_4:51057213-51057232 | Msa0505500:intron | 45.0% | |
| TCAAGCGCTTAAATGCGGTA+CGG | - | chr3_4:51057218-51057237 | Msa0505500:intron | 45.0% | |
| GCTATCACAAACAGTCTCAC+AGG | - | chr3_4:51057491-51057510 | Msa0505500:intron | 45.0% | |
| TACCCCTGTGTTATATGCTG+TGG | - | chr3_4:51057684-51057703 | Msa0505500:intron | 45.0% | |
| GGATCCACAGCATATAACAC+AGG | + | chr3_4:51057691-51057710 | None:intergenic | 45.0% | |
| CATGTGGCATCAATGAAGAG+CGG | - | chr3_4:51057782-51057801 | Msa0505500:CDS | 45.0% | |
| ACCGCAAATCATCGAAACAG+TGG | - | chr3_4:51058938-51058957 | Msa0505500:CDS | 45.0% | |
| ! | GTCTGCAAGCTTGTTCATTG+TGG | + | chr3_4:51058968-51058987 | None:intergenic | 45.0% |
| CAACTTGTAGTGCGACAAAG+AGG | - | chr3_4:51059062-51059081 | Msa0505500:intron | 45.0% | |
| AAGCTCACAGTTTATGGCGG+CGG | + | chr3_4:51056381-51056400 | None:intergenic | 50.0% | |
| GGCATCAATGAAGAGCGGTT+AGG | - | chr3_4:51057787-51057806 | Msa0505500:CDS | 50.0% | |
| !! | CACGATGGTGGTCTTGTTCA+TGG | - | chr3_4:51057850-51057869 | Msa0505500:CDS | 50.0% |
| TGCGACAAAGAGGACGAAAG+AGG | - | chr3_4:51059072-51059091 | Msa0505500:intron | 50.0% | |
| AAGAGGACGAAAGAGGACCA+TGG | - | chr3_4:51059079-51059098 | Msa0505500:intron | 50.0% | |
| !!! | GGATTTTGGAGTAGGAGGCG+AGG | - | chr3_4:51057629-51057648 | Msa0505500:intron | 55.0% |
| ACAACCAAGGCAAGGCGACT+TGG | - | chr3_4:51057655-51057674 | Msa0505500:intron | 55.0% | |
| CAACCAAGGCAAGGCGACTT+GGG | - | chr3_4:51057656-51057675 | Msa0505500:intron | 55.0% | |
| AACCAAGGCAAGGCGACTTG+GGG | - | chr3_4:51057657-51057676 | Msa0505500:intron | 55.0% | |
| GGACGAAAGAGGACCATGGT+TGG | - | chr3_4:51059083-51059102 | Msa0505500:intron | 55.0% | |
| CGAGGTGCACAACCAAGGCA+AGG | - | chr3_4:51057647-51057666 | Msa0505500:intron | 60.0% | |
| AACCCCAAGTCGCCTTGCCT+TGG | + | chr3_4:51057662-51057681 | None:intergenic | 60.0% | |
| GGAGGCGAGGTGCACAACCA+AGG | - | chr3_4:51057642-51057661 | Msa0505500:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 51056333 | 51059319 | 51056333 | ID=Msa0505500;Name=Msa0505500 |
| chr3_4 | mRNA | 51056333 | 51059319 | 51056333 | ID=Msa0505500-mRNA-1;Parent=Msa0505500;Name=Msa0505500-mRNA-1;_AED=0.13;_eAED=0.13;_QI=97|1|1|1|0.83|0.71|7|210|226 |
| chr3_4 | exon | 51056333 | 51056580 | 51056333 | ID=Msa0505500-mRNA-1:exon:11127;Parent=Msa0505500-mRNA-1 |
| chr3_4 | exon | 51056664 | 51056736 | 51056664 | ID=Msa0505500-mRNA-1:exon:11126;Parent=Msa0505500-mRNA-1 |
| chr3_4 | exon | 51057503 | 51057616 | 51057503 | ID=Msa0505500-mRNA-1:exon:11125;Parent=Msa0505500-mRNA-1 |
| chr3_4 | exon | 51057731 | 51058009 | 51057731 | ID=Msa0505500-mRNA-1:exon:11124;Parent=Msa0505500-mRNA-1 |
| chr3_4 | exon | 51058418 | 51058531 | 51058418 | ID=Msa0505500-mRNA-1:exon:11123;Parent=Msa0505500-mRNA-1 |
| chr3_4 | exon | 51058927 | 51059026 | 51058927 | ID=Msa0505500-mRNA-1:exon:11122;Parent=Msa0505500-mRNA-1 |
| chr3_4 | exon | 51059260 | 51059319 | 51059260 | ID=Msa0505500-mRNA-1:exon:11121;Parent=Msa0505500-mRNA-1 |
| chr3_4 | five_prime_UTR | 51059260 | 51059319 | 51059260 | ID=Msa0505500-mRNA-1:five_prime_utr;Parent=Msa0505500-mRNA-1 |
| chr3_4 | five_prime_UTR | 51058990 | 51059026 | 51058990 | ID=Msa0505500-mRNA-1:five_prime_utr;Parent=Msa0505500-mRNA-1 |
| chr3_4 | CDS | 51058927 | 51058989 | 51058927 | ID=Msa0505500-mRNA-1:cds;Parent=Msa0505500-mRNA-1 |
| chr3_4 | CDS | 51058418 | 51058531 | 51058418 | ID=Msa0505500-mRNA-1:cds;Parent=Msa0505500-mRNA-1 |
| chr3_4 | CDS | 51057731 | 51058009 | 51057731 | ID=Msa0505500-mRNA-1:cds;Parent=Msa0505500-mRNA-1 |
| chr3_4 | CDS | 51057503 | 51057616 | 51057503 | ID=Msa0505500-mRNA-1:cds;Parent=Msa0505500-mRNA-1 |
| chr3_4 | CDS | 51056664 | 51056736 | 51056664 | ID=Msa0505500-mRNA-1:cds;Parent=Msa0505500-mRNA-1 |
| chr3_4 | CDS | 51056543 | 51056580 | 51056543 | ID=Msa0505500-mRNA-1:cds;Parent=Msa0505500-mRNA-1 |
| chr3_4 | three_prime_UTR | 51056333 | 51056542 | 51056333 | ID=Msa0505500-mRNA-1:three_prime_utr;Parent=Msa0505500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
