AlfalfaGEDB | Msa0414670

M. sativa cultivar zhongmu-4 / Msa0414670

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414670	XP_013460465.1	95.719	911	26	1	1	898	1	911	0.0	1795

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414670	sp\|Q8W4L5\|VAL1_ARATH	48.438	832	330	19	1	823	6	747	0.0	687

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414670	A0A072UZF3	95.719	911	26	1	1	898	1	911	0.0	1795

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TFs/TRs:

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Gene ID	Type	Classification
Msa0414670	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0414670	Msa0459580	0.832175	1.098276e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414670	MtrunA17_Chr3g0107701	95.719	911	26	1	1	898	1	911	0.0	1795
Msa0414670	MtrunA17_Chr5g0432721	55.381	827	312	13	1	819	1	778	0.0	832
Msa0414670	MtrunA17_Chr4g0012861	49.266	885	409	15	16	881	19	882	0.0	797
Msa0414670	MtrunA17_Chr2g0281191	42.599	831	389	15	17	815	43	817	0.0	586
Msa0414670	MtrunA17_Chr7g0244871	60.215	93	37	0	318	410	5	97	2.19e-34	127
Msa0414670	MtrunA17_Chr7g0251891	47.059	85	44	1	325	408	16	100	1.74e-19	87.8
Msa0414670	MtrunA17_Chr7g0237841	37.255	102	62	2	325	424	623	724	5.02e-16	82.8
Msa0414670	MtrunA17_Chr1g0178071	36.364	165	80	9	306	456	54	207	5.59e-14	74.3
Msa0414670	MtrunA17_Chr7g0276471	40.659	91	49	3	325	412	117	205	4.83e-13	72.4
Msa0414670	MtrunA17_Chr5g0422501	35.345	116	61	4	325	428	235	348	1.75e-12	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414670	AT2G30470.1	48.438	832	330	19	1	823	6	747	0.0	687
Msa0414670	AT4G32010.2	49.391	739	279	17	15	748	20	668	0.0	660
Msa0414670	AT4G32010.1	49.125	743	279	18	15	748	20	672	0.0	656
Msa0414670	AT4G21550.2	54.861	144	61	2	294	435	294	435	2.47e-45	172
Msa0414670	AT4G21550.2	46.575	73	39	0	17	89	31	103	7.56e-17	85.1
Msa0414670	AT4G21550.3	54.861	144	61	2	294	435	294	435	6.28e-45	171
Msa0414670	AT4G21550.3	46.575	73	39	0	17	89	31	103	1.39e-16	84.7
Msa0414670	AT4G21550.1	54.861	144	61	2	294	435	294	435	1.54e-44	172
Msa0414670	AT4G21550.1	46.575	73	39	0	17	89	31	103	6.04e-17	86.3
Msa0414670	AT4G21550.1	39.683	126	68	3	669	791	528	648	9.85e-12	69.3

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Find 251 sgRNAs with CRISPR-Local

Find 561 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTAGTGATCATATAT+GGG	0.502313	3_2:-60333109	Msa0414670:CDS
AAAAGTAAGAGATTGCTTAT+TGG	0.238596	3_2:-60335163	Msa0414670:CDS
AAAATGTCTGGGATACAAGC+AGG	0.570539	3_2:-60334022	Msa0414670:intron
AAACATCCTAGACACCGTCC+CGG	0.669264	3_2:-60333480	Msa0414670:CDS
AAAGGGTGGGGTTTACGATC+TGG	0.472704	3_2:-60340279	Msa0414670:CDS
AAAGTTAATGACTGAACAGG+CGG	0.651260	3_2:+60337199	None:intergenic
AAATACTTCCCAACTAAATA+TGG	0.354913	3_2:-60338611	Msa0414670:intron
AAATCCATGGCCTGTATACA+AGG	0.462450	3_2:+60335913	None:intergenic
AAATCGCGATGACTCGCAAG+TGG	0.598065	3_2:-60333142	Msa0414670:CDS
AAATGGATAGTGGTAAAGAC+AGG	0.529105	3_2:+60332666	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGAGTTATTAATGAGTTTG+AGG	-	chr3_2:60333075-60333094	Msa0414670:CDS	30.0%
TATATCCTTTCTTACCATTC+CGG	-	chr3_2:60333428-60333447	Msa0414670:CDS	30.0%
TATGTTGTGATTGTGTATTG+TGG	-	chr3_2:60333613-60333632	Msa0414670:CDS	30.0%
GAGGATCAATGTATCTAATT+TGG	-	chr3_2:60333681-60333700	Msa0414670:intron	30.0%
ATCCAGTCAACTTAATTAAG+AGG	-	chr3_2:60334059-60334078	Msa0414670:CDS	30.0%
TCCAGTCAACTTAATTAAGA+GGG	-	chr3_2:60334060-60334079	Msa0414670:CDS	30.0%
CAAAAAACTGAACTCTCAAA+GGG	+	chr3_2:60334643-60334662	None:intergenic	30.0%
ACAAAAAACTGAACTCTCAA+AGG	+	chr3_2:60334644-60334663	None:intergenic	30.0%
TCATTGAAATCTGTTTGACT+TGG	-	chr3_2:60334779-60334798	Msa0414670:intron	30.0%
CGTAATAACACAAAAATTGC+TGG	+	chr3_2:60335273-60335292	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	60332641	60340882	60332641	ID=Msa0414670;Name=Msa0414670
chr3_2	mRNA	60332641	60340882	60332641	ID=Msa0414670-mRNA-1;Parent=Msa0414670;Name=Msa0414670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=184\|0.91\|1\|1\|0.91\|0.84\|13\|259\|898
chr3_2	exon	60332641	60333642	60332641	ID=Msa0414670-mRNA-1:exon:12576;Parent=Msa0414670-mRNA-1
chr3_2	exon	60333847	60333914	60333847	ID=Msa0414670-mRNA-1:exon:12575;Parent=Msa0414670-mRNA-1
chr3_2	exon	60334023	60334136	60334023	ID=Msa0414670-mRNA-1:exon:12574;Parent=Msa0414670-mRNA-1
chr3_2	exon	60334836	60334885	60334836	ID=Msa0414670-mRNA-1:exon:12573;Parent=Msa0414670-mRNA-1
chr3_2	exon	60335042	60335464	60335042	ID=Msa0414670-mRNA-1:exon:12572;Parent=Msa0414670-mRNA-1
chr3_2	exon	60335576	60335652	60335576	ID=Msa0414670-mRNA-1:exon:12571;Parent=Msa0414670-mRNA-1
chr3_2	exon	60335896	60336070	60335896	ID=Msa0414670-mRNA-1:exon:12570;Parent=Msa0414670-mRNA-1
chr3_2	exon	60336236	60336332	60336236	ID=Msa0414670-mRNA-1:exon:12569;Parent=Msa0414670-mRNA-1
chr3_2	exon	60336830	60337491	60336830	ID=Msa0414670-mRNA-1:exon:12568;Parent=Msa0414670-mRNA-1
chr3_2	exon	60338612	60338713	60338612	ID=Msa0414670-mRNA-1:exon:12567;Parent=Msa0414670-mRNA-1
chr3_2	exon	60338806	60338887	60338806	ID=Msa0414670-mRNA-1:exon:12566;Parent=Msa0414670-mRNA-1
chr3_2	exon	60340249	60340374	60340249	ID=Msa0414670-mRNA-1:exon:12565;Parent=Msa0414670-mRNA-1
chr3_2	exon	60340721	60340882	60340721	ID=Msa0414670-mRNA-1:exon:12564;Parent=Msa0414670-mRNA-1
chr3_2	five_prime_UTR	60340721	60340882	60340721	ID=Msa0414670-mRNA-1:five_prime_utr;Parent=Msa0414670-mRNA-1
chr3_2	five_prime_UTR	60340353	60340374	60340353	ID=Msa0414670-mRNA-1:five_prime_utr;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60340249	60340352	60340249	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60338806	60338887	60338806	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60338612	60338713	60338612	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60336830	60337491	60336830	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60336236	60336332	60336236	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60335896	60336070	60335896	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60335576	60335652	60335576	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60335042	60335464	60335042	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60334836	60334885	60334836	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60334023	60334136	60334023	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60333847	60333914	60333847	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	CDS	60332900	60333642	60332900	ID=Msa0414670-mRNA-1:cds;Parent=Msa0414670-mRNA-1
chr3_2	three_prime_UTR	60332641	60332899	60332641	ID=Msa0414670-mRNA-1:three_prime_utr;Parent=Msa0414670-mRNA-1

Gene Sequence

>Msa0414670

ATGGGTTCTGACATTGGTATGGTAAATGGTTCGTGTGTTCATGAATGGAAGAAAGGGTGGGGTTTACGATCTGGTGGATTTGCTCAACTTTGCTTCAAGTGCGGATCTCCCTTTGAGAGTTCAGTTTTTTGTAATAAATTCCATCGTCAACAAACTGGTTGGCGAGAGTGTAACATTTGCAACAAGCCTATCCACAGTGGATGTGTAGTATCTAAATCTCTGTTCGAGTATCTTGACTTCGGCGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCAACTAAATATGATTCGTAATACTGAAAATCCTAAATGGCCCGTTTCATCGACCCAAAATAATGCAAGGGATATTCATTCCGCTCATTTTGACAGCGGACTGTTTATGAGTAATGTTGATGAAGGAAAGCTTATGCAATTATGCAGAGTTGTTGAAGCTAGTGAATCTATCCATATGAGTCATGCTCCGATAAACAACATGATTACATCTAATGGGAAAAACAATCAAGAAGTTAGGCCGTCATTCAGGGAAGGGGATACTGGATTTTCAAATGTGATTAAACCGCCTGTTCAGTCATTAACTTTTGCCACGTTAGAAAATAATAGACCAGCATGGGAGATTAAAAGCATGCATGAATCAAATGCGAGGCCGTCTTTGAATATGTGTTTGGGAAACCCGTCAGGGAACAACTCTTTCCCACCATCTGGTGGAGAGACTACAGACGGAAGACTTGAGGGAAAAGTATCTCCTCCCTTTCATCAAGGGCCGAGATCTCGTCCTATACTTCCCAAACTGTTAAAGACCGGCCTTACCATGAATATAGAAACTGAAAAAGGGACACTTTCTCAACCACGTATTGCTCGGCCTCCTGGTGATGGGAGGGGTAAGAATCAGTTACTTCCTAGATATTGGCCTAGGATTACGGACCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAGTCCACAGTAGTGCCATTGTTTGAGAAGGTGCTGAGTGCCAGTGATGCAGGTCGGATTGGTCGTCTTGTTCTCCCAAAAGCTTGTGCTGAGGCATATTTTCCTCATATTACACACTCTGAAGGTCTTCCTTTGCGGGTCCAAGATGTGAAGGGTAATGAATGGACTTTTCAATTCAGATTTTGGCCTAATAACAACAGCAGGATGTACGTATTGGAGGGTGTGACCCCTTGTATACAGGCCATGGATTTACGTGCTGGTGATACTGTTACATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATGGGTTTCAGAAAGTCATCAAATTCCGTAGACACACAGGATGCTTCTACATCTGCACATTCTAATGGCGGTTCTGCAAAGGGAGATACCTTTTCTGGTGGAAATGAGAATCTTCCATTGGGAAGTAATTGTGCCGATCTTCTCCGTTCACCAAATGGTAACGGGGAACTTCGCTTAAATGGACATCCCGAACCTTCACATTTGGTTACTGGACCCGCTGGTTTGCTTAAAGCCGAAAATGGCGAAATGACATGCAATAATTCACTGGACCAAAAAAATTCAGCTTCAGAGAAGAAGAGGACTCGAAATATTGGCCTTAAAAGTAAGAGATTGCTTATTGGTAATGATGATTCTATGGAGTTGAGACTTACATGGGAAGAAGCACAAGACTTGCTTCGTCCACCGCCCAGTGTCAAGCCAAGCATTGTCACAATCGAGGATCAAGTATTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACAATCTTCAGCGCCTCTTCATCTGGGGTGAAGGAACAGTGGGCTCAATGTGATGATTGCTCTAAATGGAGAAAGTTACCGGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCGGAAAATGTCTGGGATACAAGCAGATCTTCATGTTCCGCACCGGACGAGCTGAGCTCAAGGGAATTGGAAAATCTTTTGAAATCTAGCAAAGATTTTAAGAAGCGACGGATTGTAGAAAACAGCAAGTTGATCCAAGAACACGAGCCTTCTGGCTTAGACGCTCTCGCCAGTTTAGCCGTTTTAGGAGAAAATCTCTTGGGCCCTGCTGATTCCGCAGCTGGAGCCACCACGAAACATCCTAGACACCGTCCCGGCTGTTCTTGTATTGTGTGCATTCAGCCACCAAGCGGAAAAGGGAGACACAAGCCAACATGTACTTGCAACGTGTGTACGACCGTGAAGCGTCGGTTCAAAACGCTTATGCTACGCAAGAAGAAACGACAATCAGAGCGTGAAGCAGATGCCGCCGCCAAAAAAGAACACATTCACAACAGAGTTGACGAGTCAGATACCAATGGTGGAGCATCAAGAGAAGTTGCGAATCCTTTGGAAAACGAAGGAGGACTAAATAGAGGTCAAGTCGAGGTTGGCGAGTCCAGCGCTGGAAAGATAGATCTTAATTGTCATCCAAATCGCGATGACTCGCAAGTGGATAATGTCGCAAAACTTAGTGATCATATATGGGAACATATTAATATGAACCAAAATGGCGGTCCAAGAACCGTTAATACTGAAATGGAGGAAGGTCAACATTCTTCTTTGGCCACTCAATCTAATGGTGAGGATACGAGACACTTGTCGGATGAAAGATGCATTGCATCCAATGTTGGGAACAAAGAAAGAAGAGATGAGGTATTAAATCATTCAAATGAAAGTGAAAAGAATTTGTCTTGA

Protein sequence

>Msa0414670

MGSDIGMVNGSCVHEWKKGWGLRSGGFAQLCFKCGSPFESSVFCNKFHRQQTGWRECNICNKPIHSGCVVSKSLFEYLDFGGIGCVSCVNTSQLNMIRNTENPKWPVSSTQNNARDIHSAHFDSGLFMSNVDEGKLMQLCRVVEASESIHMSHAPINNMITSNGKNNQEVRPSFREGDTGFSNVIKPPVQSLTFATLENNRPAWEIKSMHESNARPSLNMCLGNPSGNNSFPPSGGETTDGRLEGKVSPPFHQGPRSRPILPKLLKTGLTMNIETEKGTLSQPRIARPPGDGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHITHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMDLRAGDTVTFSRIDPGGKLVMGFRKSSNSVDTQDASTSAHSNGGSAKGDTFSGGNENLPLGSNCADLLRSPNGNGELRLNGHPEPSHLVTGPAGLLKAENGEMTCNNSLDQKNSASEKKRTRNIGLKSKRLLIGNDDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGVKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCSAPDELSSRELENLLKSSKDFKKRRIVENSKLIQEHEPSGLDALASLAVLGENLLGPADSAAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKKEHIHNRVDESDTNGGASREVANPLENEGGLNRGQVEVGESSAGKIDLNCHPNRDDSQVDNVAKLSDHIWEHINMNQNGGPRTVNTEMEEGQHSSLATQSNGEDTRHLSDERCIASNVGNKERRDEVLNHSNESEKNLS*