AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0459580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459580 MtrunA17_Chr3g0107701 95.719 911 26 1 1 898 1 911 0.0 1796
Msa0459580 MtrunA17_Chr5g0432721 55.502 827 311 13 1 819 1 778 0.0 835
Msa0459580 MtrunA17_Chr4g0012861 49.212 888 405 16 16 881 19 882 0.0 792
Msa0459580 MtrunA17_Chr2g0281191 42.840 831 387 16 17 815 43 817 0.0 583
Msa0459580 MtrunA17_Chr7g0244871 60.215 93 37 0 318 410 5 97 2.19e-34 127
Msa0459580 MtrunA17_Chr7g0251891 47.059 85 44 1 325 408 16 100 1.63e-19 87.8
Msa0459580 MtrunA17_Chr7g0237841 37.255 102 62 2 325 424 623 724 4.77e-16 82.8
Msa0459580 MtrunA17_Chr1g0178071 36.364 165 80 9 306 456 54 207 5.85e-14 74.3
Msa0459580 MtrunA17_Chr7g0276471 40.659 91 49 3 325 412 117 205 5.32e-13 72.4
Msa0459580 MtrunA17_Chr5g0422501 35.345 116 61 4 325 428 235 348 1.93e-12 70.5
Msa0459580 MtrunA17_Chr8g0345771 38.462 91 51 3 325 412 171 259 2.23e-12 70.5
Msa0459580 MtrunA17_Chr7g0266821 30.645 186 99 7 330 508 65 227 3.06e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459580 AT2G30470.1 48.438 832 330 19 1 823 6 747 0.0 689
Msa0459580 AT4G32010.2 49.256 739 280 16 15 748 20 668 0.0 655
Msa0459580 AT4G32010.1 48.991 743 280 17 15 748 20 672 0.0 651
Msa0459580 AT4G21550.3 39.655 290 117 6 294 580 294 528 7.03e-55 200
Msa0459580 AT4G21550.3 46.575 73 39 0 17 89 31 103 1.34e-16 84.7
Msa0459580 AT4G21550.2 38.686 274 111 5 294 565 294 512 3.93e-50 186
Msa0459580 AT4G21550.2 46.575 73 39 0 17 89 31 103 7.97e-17 85.1
Msa0459580 AT4G21550.1 54.861 144 61 2 294 435 294 435 1.61e-44 172
Msa0459580 AT4G21550.1 46.575 73 39 0 17 89 31 103 6.20e-17 86.3
Msa0459580 AT4G21550.1 39.683 126 68 3 669 791 528 648 9.60e-12 69.3
Msa0459580 AT3G26790.1 42.308 104 59 1 325 427 91 194 4.34e-20 92.8
Msa0459580 AT3G24650.1 39.216 102 60 2 325 424 571 672 4.52e-16 83.6
Msa0459580 AT1G13260.1 39.091 110 60 4 325 429 187 294 1.74e-14 76.3
Msa0459580 AT2G36080.4 39.815 108 56 4 325 425 37 142 2.77e-14 72.4
Msa0459580 AT2G36080.2 39.815 108 56 4 325 425 37 142 2.77e-14 72.4
Msa0459580 AT1G28300.1 43.023 86 48 1 325 409 170 255 2.88e-14 75.9
Msa0459580 AT2G36080.1 39.815 108 56 4 325 425 37 142 6.07e-14 73.2
Msa0459580 AT4G01500.1 41.573 89 49 2 325 412 35 121 1.52e-13 73.6
Msa0459580 AT1G68840.2 41.935 93 47 3 325 412 187 277 1.53e-13 73.6
Msa0459580 AT1G68840.1 41.935 93 47 3 325 412 187 277 1.53e-13 73.6
Msa0459580 AT2G36080.3 39.815 108 56 4 325 425 37 142 5.76e-13 70.1
Msa0459580 AT5G06250.4 31.707 164 89 6 314 459 37 195 8.47e-13 70.5
Msa0459580 AT5G06250.5 33.557 149 76 6 314 444 37 180 8.61e-13 70.1
Msa0459580 AT5G06250.2 31.707 164 89 6 314 459 37 195 8.73e-13 70.5
Msa0459580 AT5G06250.3 33.557 149 76 6 314 444 37 180 9.36e-13 70.1
Msa0459580 AT5G06250.1 33.557 149 76 6 314 444 37 180 9.62e-13 70.1
Msa0459580 AT3G61970.1 39.362 94 49 3 325 412 22 113 1.04e-12 70.5
Msa0459580 AT2G46870.1 39.560 91 50 3 325 412 34 122 1.30e-12 70.1
Msa0459580 AT1G01030.2 39.560 91 50 3 325 412 55 143 6.06e-12 68.6
Msa0459580 AT1G25560.1 34.167 120 65 4 325 432 194 311 6.63e-12 68.6
Msa0459580 AT1G01030.1 39.560 91 50 3 325 412 55 143 6.85e-12 68.6
Msa0459580 AT3G11580.4 38.235 102 47 3 325 412 28 127 2.19e-11 65.1
Msa0459580 AT3G11580.2 38.235 102 47 3 325 412 28 127 2.19e-11 65.1
Msa0459580 AT3G11580.5 38.235 102 47 3 325 412 28 127 2.19e-11 65.1

Find 247 sgRNAs with CRISPR-Local

Find 571 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATATCCCTTGCATTATTT+TGG 0.089803 3_3:+56225357 None:intergenic
CGGTTCTTGGACCGCCATTT+TGG 0.204307 3_3:+56221003 None:intergenic
AACGGGGAACTTCGCTTAAA+TGG 0.226581 3_3:-56223251 Msa0459580:CDS
CAAACCTCAGCACAGGCTTT+TGG 0.248819 3_3:+56224160 None:intergenic
ATGAATATAGAAACTGAAAA+AGG 0.252818 3_3:-56224876 Msa0459580:CDS
AACAACATGATTACATCTAA+TGG 0.257026 3_3:-56225218 Msa0459580:CDS
AAAAGTAAGAGGTTGCTTAT+TGG 0.263528 3_3:-56223092 Msa0459580:CDS
CAAAACTTAGTGATCATATA+TGG 0.264606 3_3:-56221043 Msa0459580:CDS
ATCAGTTACTTCCTAGATAT+TGG 0.275669 3_3:-56224800 Msa0459580:CDS
GATGTAATCATGTTGTTTAT+CGG 0.277647 3_3:+56225224 None:intergenic
GAACCTTCACATTTGGTTAC+TGG 0.283547 3_3:-56223221 Msa0459580:CDS
AGCCAGAAGGCTCGTGTTCT+TGG 0.294965 3_3:+56221513 None:intergenic
CTCTGAAGGTCTTCCTTTGC+GGG 0.296256 3_3:-56223954 Msa0459580:CDS
GGAAGGTCAACATTCTTCTT+TGG 0.296343 3_3:-56220964 Msa0459580:CDS
TACATCCTGCTGTTGTTATT+AGG 0.296564 3_3:+56223884 None:intergenic
GGCCCTGCTGATTCCGCAGC+TGG 0.302776 3_3:-56221446 Msa0459580:CDS
TTCTCCTAAAACGGCTAAAC+TGG 0.304782 3_3:+56221478 None:intergenic
GGTTTGCTTAAAGCCGAAAA+TGG 0.307447 3_3:-56223191 Msa0459580:CDS
GTCGATGAAACGGGCCATTT+AGG 0.307880 3_3:+56225380 None:intergenic
ATCTTCAGCGCCTCTTCATC+TGG 0.309531 3_3:-56222764 Msa0459580:CDS
ATTTCAGTATTAACGGTTCT+TGG 0.327294 3_3:+56220990 None:intergenic
TAGATATTGGCCTAGGATTA+CGG 0.327990 3_3:-56224787 Msa0459580:CDS
TATTGGTAATGATGATTCTA+TGG 0.330411 3_3:-56223075 Msa0459580:CDS
CATATTAATATGAACCAAAA+TGG 0.335008 3_3:-56221017 Msa0459580:CDS
GTAATACTGAAAATCCTAAA+TGG 0.335624 3_3:-56225394 Msa0459580:CDS
GCCGTCTTTGAATATGTGTT+TGG 0.340861 3_3:-56225042 Msa0459580:CDS
TATCTTGACTTCGGCGGTAT+AGG 0.341914 3_3:-56226575 Msa0459580:CDS
TCTTTGGCCACTCAATCTAA+TGG 0.347543 3_3:-56220948 Msa0459580:CDS
ATCCAAGAACACGAGCCTTC+TGG 0.347833 3_3:-56221515 Msa0459580:CDS
CTCTAAATGGAGAAAGTTAC+CGG 0.350506 3_3:-56222011 Msa0459580:CDS
AAGGCCGGTCTTTAACAGTT+TGG 0.353568 3_3:+56224902 None:intergenic
AAATACTTCCCAACTAAATA+TGG 0.354913 3_3:-56226537 Msa0459580:intron
AAGAAGTTAGGCCGTCATTC+AGG 0.358196 3_3:-56225184 Msa0459580:CDS
ATTCATTACCCTTCACATCT+TGG 0.362672 3_3:+56223930 None:intergenic
CGAGCTGAGCTCAAGGGAAT+TGG 0.363584 3_3:-56221801 Msa0459580:CDS
TTCCTGCATTTCAGTATTAA+CGG 0.365173 3_3:+56220983 None:intergenic
CAGGAGCTGGAGCGTTTGTC+TGG 0.368698 3_3:-56224762 Msa0459580:CDS
AATGTGATGATTGCTCTAAA+TGG 0.377625 3_3:-56222024 Msa0459580:CDS
AAGAAGAGGACTCGAAATAT+TGG 0.381088 3_3:-56223119 Msa0459580:CDS
AGGCCGGTCTTTAACAGTTT+GGG 0.381417 3_3:+56224903 None:intergenic
TCCGTTCACCAAATGGTAAC+GGG 0.384737 3_3:-56223268 Msa0459580:CDS
GGACATGTTCGGAAAATGTC+TGG 0.386985 3_3:-56221964 Msa0459580:CDS
CGAAGTTCCCCGTTACCATT+TGG 0.389637 3_3:+56223260 None:intergenic
GCTCCAGCTGCGGAATCAGC+AGG 0.391479 3_3:+56221443 None:intergenic
TCATTCAGGGAAGGGGATAC+TGG 0.395233 3_3:-56225170 Msa0459580:CDS
CCGTCTTTGAATATGTGTTT+GGG 0.395837 3_3:-56225041 Msa0459580:CDS
ACAACATGATTACATCTAAT+GGG 0.396289 3_3:-56225217 Msa0459580:CDS
GAGAAAACGTGAAGTGGGTA+TGG 0.399165 3_3:+56228642 None:intergenic
AAGAGAAGTTGCGAATCCTT+TGG 0.400555 3_3:-56221177 Msa0459580:CDS
ACATCCCGAACCTTCACATT+TGG 0.405564 3_3:-56223228 Msa0459580:CDS
GATTTACGTGCTGGTGATAC+TGG 0.406488 3_3:-56223824 Msa0459580:intron
ACTCTGAAGGTCTTCCTTTG+CGG 0.407452 3_3:-56223955 Msa0459580:CDS
TCTTTCTTTGTTCCCAACAT+TGG 0.407495 3_3:+56220884 None:intergenic
TCCCTTGAGCTCAGCTCGTC+CGG 0.408864 3_3:+56221806 None:intergenic
TTATCGGAGCATGACTCATA+TGG 0.413523 3_3:+56225240 None:intergenic
TTTAACAGTTTGGGAAGTAT+AGG 0.414755 3_3:+56224912 None:intergenic
ATTCAGCCACCAAGCGGAAA+AGG 0.418817 3_3:-56221371 Msa0459580:CDS
CCACGTATTGCTCGGCCTCC+TGG 0.420064 3_3:-56224840 Msa0459580:CDS
GACAATGCTTGGCTTGACAC+TGG 0.420212 3_3:+56223004 None:intergenic
AGTAACCAAATGTGAAGGTT+CGG 0.423310 3_3:+56223223 None:intergenic
TTAAACTTACCATATTTAGT+TGG 0.425360 3_3:+56226528 None:intergenic
TCCTCGATTGTGACAATGCT+TGG 0.426368 3_3:+56222993 None:intergenic
ATGTGTTTGGGAAACCCGTC+AGG 0.426949 3_3:-56225029 Msa0459580:CDS
CTCAACTTTGCTTCAAGTGC+GGG 0.431608 3_3:-56228160 Msa0459580:intron
CTTCTCATTTCCACCAGAAA+AGG 0.433625 3_3:+56223322 None:intergenic
ATTGCTCGGCCTCCTGGTGA+TGG 0.435069 3_3:-56224834 Msa0459580:CDS
CATTTGGTTACTGGAGCTGC+TGG 0.436882 3_3:-56223212 Msa0459580:CDS
ACATTTAGTCGGATAGATCC+TGG 0.438208 3_3:-56223557 Msa0459580:CDS
GTAACCAAATGTGAAGGTTC+GGG 0.441449 3_3:+56223224 None:intergenic
TCCTCCCAAGTGGACATGTT+CGG 0.442585 3_3:-56221975 Msa0459580:CDS
TCGGCCTCCTGGTGATGGGA+GGG 0.451096 3_3:-56224829 Msa0459580:CDS
ACCAATCCGACCTGCATCAC+TGG 0.451773 3_3:+56224195 None:intergenic
GGGTGTGACCCCTTGTATAC+AGG 0.451818 3_3:-56223852 Msa0459580:CDS
AACAACTCTTTCCCACCATC+TGG 0.452851 3_3:-56225005 Msa0459580:CDS
CGGCCTCCTGGTGATGGGAG+GGG 0.454483 3_3:-56224828 Msa0459580:CDS
TAAACTTACCATATTTAGTT+GGG 0.454535 3_3:+56226529 None:intergenic
GCAAAAGTTAATGACTGAAC+AGG 0.455178 3_3:+56225125 None:intergenic
AAATCCATGGCCTGTATACA+AGG 0.462450 3_3:+56223842 None:intergenic
TTCTATATTCATGGTAAGGC+CGG 0.462900 3_3:+56224887 None:intergenic
AAATTCCATCGTCAACAAAC+TGG 0.467730 3_3:-56226760 Msa0459580:CDS
CAGTTTCTATATTCATGGTA+AGG 0.468963 3_3:+56224883 None:intergenic
GATCTCGGCCCTTGATGAAA+AGG 0.470611 3_3:+56224939 None:intergenic
TTCTCTTGATGCTCCACCAT+TGG 0.470671 3_3:+56221193 None:intergenic
CTCGGCCTCCTGGTGATGGG+AGG 0.470919 3_3:-56224830 Msa0459580:CDS
AAAGGGTGGGGTTTACGATC+TGG 0.472704 3_3:-56228191 Msa0459580:CDS
TAGGATTACGGACCAGGAGC+TGG 0.472738 3_3:-56224775 Msa0459580:CDS
AAGATCTATCTTTCCAGCGC+TGG 0.475080 3_3:+56221109 None:intergenic
GATGCATTGCATCCAATGTT+GGG 0.477504 3_3:-56220896 Msa0459580:CDS
GGAAAGAGTTGTTCCCTGAC+GGG 0.480170 3_3:+56225015 None:intergenic
GATCTTCTCCGTTCACCAAA+TGG 0.483108 3_3:-56223275 Msa0459580:CDS
CTATGGAGTTGAGACTTACA+TGG 0.484609 3_3:-56223058 Msa0459580:CDS
AGAAGTTAGGCCGTCATTCA+GGG 0.485967 3_3:-56225183 Msa0459580:CDS
CCTTCAGAGTGTGTAATATG+AGG 0.486209 3_3:+56223968 None:intergenic
CACTTGCGAGTCATCGCGAT+TGG 0.487038 3_3:+56221076 None:intergenic
CTTGGCTTGACACTGGGCGG+TGG 0.487076 3_3:+56223011 None:intergenic
CCCCGTTACCATTTGGTGAA+CGG 0.487521 3_3:+56223267 None:intergenic
TCTGACATTGGTATGGTGAA+TGG 0.488296 3_3:-56228236 Msa0459580:CDS
CAACAGCAGGATGTACGTAT+TGG 0.488320 3_3:-56223876 Msa0459580:CDS
GTGCTGAGTGCCAGTGATGC+AGG 0.488585 3_3:-56224205 Msa0459580:CDS
AACTATTTCGTCCAGGGTGA+AGG 0.490506 3_3:-56222059 Msa0459580:intron
TACTTCCTAGATATTGGCCT+AGG 0.490891 3_3:-56224794 Msa0459580:CDS
AGAGAGAGAAAACGTGAAGT+GGG 0.493467 3_3:+56228637 None:intergenic
ATATTGGCCTTAAAAGTAAG+AGG 0.494211 3_3:-56223103 Msa0459580:CDS
CACCGGACGAGCTGAGCTCA+AGG 0.494872 3_3:-56221808 Msa0459580:CDS
CAGACAAACGCTCCAGCTCC+TGG 0.495028 3_3:+56224763 None:intergenic
AACCGTTAATACTGAAATGC+AGG 0.496893 3_3:-56220985 Msa0459580:CDS
GAACAGCCGGGACGGTGTCT+AGG 0.499276 3_3:+56221407 None:intergenic
TTCAGCCACCAAGCGGAAAA+GGG 0.500074 3_3:-56221370 Msa0459580:CDS
CTCAGCACCTTCTCAAACAA+TGG 0.504763 3_3:+56224220 None:intergenic
AAAACTTAGTGATCATATAT+GGG 0.505964 3_3:-56221042 Msa0459580:CDS
GGGAAAGAGTTGTTCCCTGA+CGG 0.506096 3_3:+56225014 None:intergenic
TTGCTCGGCCTCCTGGTGAT+GGG 0.511113 3_3:-56224833 Msa0459580:CDS
TAGAGAGAGAAAACGTGAAG+TGG 0.511563 3_3:+56228636 None:intergenic
TTCTAACGGCGGTTCTGCAA+AGG 0.511887 3_3:-56223351 Msa0459580:CDS
TTCTTACCCCTCCCATCACC+AGG 0.513704 3_3:+56224822 None:intergenic
ATTCAGCTTCAGAGAAGAAG+AGG 0.515423 3_3:-56223133 Msa0459580:CDS
ACTACAGACGGAAGACTTGA+GGG 0.517542 3_3:-56224975 Msa0459580:CDS
AGAAAACGTGAAGTGGGTAT+GGG 0.519518 3_3:+56228643 None:intergenic
GCCAGTGATGCAGGTCGGAT+TGG 0.520413 3_3:-56224196 Msa0459580:CDS
CATGAATGGAAGAAAGGGTG+GGG 0.520502 3_3:-56228203 Msa0459580:CDS
GTAATCCTAGGCCAATATCT+AGG 0.520534 3_3:+56224789 None:intergenic
GTGACCAACCTGTGTATCTA+CGG 0.523264 3_3:+56223496 None:intergenic
TTTGGCCTAATAACAACAGC+AGG 0.525991 3_3:-56223889 Msa0459580:CDS
TTGGCCTAGGATTACGGACC+AGG 0.525994 3_3:-56224781 Msa0459580:CDS
ACAATGCTTGGCTTGACACT+GGG 0.526210 3_3:+56223005 None:intergenic
CATTTAGTCGGATAGATCCT+GGG 0.527144 3_3:-56223556 Msa0459580:CDS
GGAAATGAGAAGCTTCCATC+GGG 0.527147 3_3:-56223311 Msa0459580:CDS
ATGCTCTTCTTCCTCCCAAG+TGG 0.528369 3_3:-56221985 Msa0459580:CDS
AGAAAATAATAGACCAGCAT+GGG 0.528624 3_3:-56225096 Msa0459580:CDS
AAATGGATAGTGGTAAAGAC+AGG 0.529105 3_3:+56220599 None:intergenic
GCACACAATACAAGAACAGC+CGG 0.529568 3_3:+56221394 None:intergenic
AAGATGTGAAGGGTAATGAA+TGG 0.530191 3_3:-56223928 Msa0459580:CDS
AGATGCATTGCATCCAATGT+TGG 0.530925 3_3:-56220897 Msa0459580:CDS
TCTAACGGCGGTTCTGCAAA+GGG 0.532661 3_3:-56223350 Msa0459580:CDS
TTCATGAATGGAAGAAAGGG+TGG 0.533771 3_3:-56228205 Msa0459580:CDS
AACGAAGGAGGACTAAATAG+AGG 0.534232 3_3:-56221152 Msa0459580:CDS
GGATGCAATGCATCTTTCAT+CGG 0.534582 3_3:+56220905 None:intergenic
AGCTCCTGGTCCGTAATCCT+AGG 0.537010 3_3:+56224777 None:intergenic
TTTCTCAACCACGTATTGCT+CGG 0.537803 3_3:-56224848 Msa0459580:CDS
CTCCGTTCACCAAATGGTAA+CGG 0.539360 3_3:-56223269 Msa0459580:CDS
GACCCCTTGTATACAGGCCA+TGG 0.540366 3_3:-56223846 Msa0459580:CDS
GAGGTTGGCGAGTCCAGCGC+TGG 0.541207 3_3:-56221122 Msa0459580:CDS
TTTATGAGTAATGTTGATGA+AGG 0.541550 3_3:-56225308 Msa0459580:CDS
ATGGTTCGTGTGTTCATGAA+TGG 0.541588 3_3:-56228217 Msa0459580:CDS
CAGCAGGATGTACGTATTGG+AGG 0.545399 3_3:-56223873 Msa0459580:CDS
CAGGCCATGGATTTACGTGC+TGG 0.546070 3_3:-56223833 Msa0459580:CDS
GACTACAGACGGAAGACTTG+AGG 0.549307 3_3:-56224976 Msa0459580:CDS
ACTTGCGAGTCATCGCGATT+GGG 0.551611 3_3:+56221077 None:intergenic
GGAGGAAGAAGAGCATCAAC+CGG 0.553613 3_3:+56221992 None:intergenic
TTTGCTTGGTGAAGATCTCA+AGG 0.562797 3_3:-56220572 None:intergenic
AACTCTTTCCCACCATCTGG+TGG 0.563581 3_3:-56225002 Msa0459580:CDS
CATCGACCCAAAATAATGCA+AGG 0.564184 3_3:-56225364 Msa0459580:CDS
GCCAACCAGTTTGTTGACGA+TGG 0.565303 3_3:+56226755 None:intergenic
TGTGTTCATGAATGGAAGAA+AGG 0.567539 3_3:-56228209 Msa0459580:CDS
TCTTCAGCGCCTCTTCATCT+GGG 0.569422 3_3:-56222763 Msa0459580:intron
CCTCATATTACACACTCTGA+AGG 0.570324 3_3:-56223968 Msa0459580:CDS
TGATTGATGGGTTCTGACAT+TGG 0.570447 3_3:-56228248 Msa0459580:exon
AAAATGTCTGGGATACAAGC+AGG 0.570539 3_3:-56221952 Msa0459580:intron
GATGGGTTCTGACATTGGTA+TGG 0.572031 3_3:-56228243 Msa0459580:CDS
ATCCTCACCATTAGATTGAG+TGG 0.573526 3_3:+56220941 None:intergenic
TCTGTAGTCTCTCCACCAGA+TGG 0.577437 3_3:+56224990 None:intergenic
ATCAAATTCCGTAGATACAC+AGG 0.577616 3_3:-56223504 Msa0459580:intron
TCTACATCTGCACATTCTAA+CGG 0.578991 3_3:-56223365 Msa0459580:CDS
TCATGAATGGAAGAAAGGGT+GGG 0.579128 3_3:-56228204 Msa0459580:CDS
TAGAAAATAATAGACCAGCA+TGG 0.580283 3_3:-56225097 Msa0459580:CDS
CAGATCTTCATGTTCCGCAC+CGG 0.581032 3_3:-56221825 Msa0459580:CDS
ACTACGCATCCACTGTGGAT+AGG 0.582032 3_3:+56226617 None:intergenic
GAACAAAGAAAGAAGAGATG+AGG 0.583288 3_3:-56220874 Msa0459580:CDS
GGAAGTATAGGACGAGATCT+CGG 0.585045 3_3:+56224924 None:intergenic
AGTAGTGCCATTGTTTGAGA+AGG 0.585604 3_3:-56224227 Msa0459580:CDS
TTTCGTGGTGGCTCCAGCTG+CGG 0.585946 3_3:+56221433 None:intergenic
GACATGTTCGGAAAATGTCT+GGG 0.586198 3_3:-56221963 Msa0459580:CDS
TAGGCCGTCATTCAGGGAAG+GGG 0.586518 3_3:-56225177 Msa0459580:CDS
TTCACATCTTGGACCCGCAA+AGG 0.587006 3_3:+56223941 None:intergenic
CTATAAACAAACCTCAGCAC+AGG 0.588044 3_3:+56224153 None:intergenic
CACACGTTGCAAGTACATGT+TGG 0.588233 3_3:+56221338 None:intergenic
AATAGAGGTCAAGTTGAGGT+TGG 0.588262 3_3:-56221137 Msa0459580:CDS
GCTCAACTTTGCTTCAAGTG+CGG 0.588515 3_3:-56228161 Msa0459580:CDS
TTTGCGGGTCCAAGATGTGA+AGG 0.588681 3_3:-56223939 Msa0459580:CDS
TCTCCCAAAAGCCTGTGCTG+AGG 0.589766 3_3:-56224164 Msa0459580:intron
TTAGGCCGTCATTCAGGGAA+GGG 0.591509 3_3:-56225178 Msa0459580:CDS
CTTCCCAAACTGTTAAAGAC+CGG 0.592604 3_3:-56224906 Msa0459580:CDS
TCCATCGTCAACAAACTGGT+TGG 0.594004 3_3:-56226756 Msa0459580:CDS
CCCAAACACATATTCAAAGA+CGG 0.594377 3_3:+56225041 None:intergenic
GTAGTCTCTCCACCAGATGG+TGG 0.595253 3_3:+56224993 None:intergenic
TCCGAACATGTCCACTTGGG+AGG 0.595376 3_3:+56221974 None:intergenic
GTGTTCATGAATGGAAGAAA+GGG 0.600298 3_3:-56228208 Msa0459580:CDS
ATCACCAGCACGTAAATCCA+TGG 0.602400 3_3:+56223829 None:intergenic
CTCCAGCTGCGGAATCAGCA+GGG 0.603654 3_3:+56221444 None:intergenic
ATCGACCCAAAATAATGCAA+GGG 0.604714 3_3:-56225363 Msa0459580:CDS
GGACTCTTACCCAGATGAAG+AGG 0.605539 3_3:+56222754 None:intergenic
CTGTTCGAGTATCTTGACTT+CGG 0.606779 3_3:-56226584 Msa0459580:CDS
GTTAGGCCGTCATTCAGGGA+AGG 0.607605 3_3:-56225179 Msa0459580:CDS
CTCGGCCCTTGATGAAAAGG+AGG 0.609634 3_3:+56224942 None:intergenic
AGTGAAAAGAATCTGTCTTG+AGG 0.609919 3_3:-56220831 Msa0459580:exon
CAATCGCGATGACTCGCAAG+TGG 0.610051 3_3:-56221075 Msa0459580:CDS
GTCCAGGGTGAAGGAACAGT+GGG 0.610789 3_3:-56222050 Msa0459580:intron
ATTTAGTCGGATAGATCCTG+GGG 0.615648 3_3:-56223555 Msa0459580:CDS
TGGAAATGAGAAGCTTCCAT+CGG 0.616197 3_3:-56223312 Msa0459580:CDS
ACGGTGTCTAGGATGTTTCG+TGG 0.616806 3_3:+56221418 None:intergenic
TAGTCTCTCCACCAGATGGT+GGG 0.617495 3_3:+56224994 None:intergenic
ACCGGACGAGCTGAGCTCAA+GGG 0.618173 3_3:-56221807 Msa0459580:CDS
GGCCACTCAATCTAATGGTG+AGG 0.620775 3_3:-56220943 Msa0459580:CDS
TGAGCTCAGCTCGTCCGGTG+CGG 0.620796 3_3:+56221811 None:intergenic
AGCAGGATGTACGTATTGGA+GGG 0.621631 3_3:-56223872 Msa0459580:CDS
CAATACAAGAACAGCCGGGA+CGG 0.625906 3_3:+56221399 None:intergenic
TATGGAGTTGAGACTTACAT+GGG 0.625949 3_3:-56223057 Msa0459580:CDS
AGTGGGTATGGGATTTGATG+AGG 0.626012 3_3:+56228654 None:intergenic
TGTGTACGACCGTGAAGCGT+CGG 0.626839 3_3:-56221319 Msa0459580:CDS
GCGAATCCTTTGGAAAACGA+AGG 0.630328 3_3:-56221167 Msa0459580:CDS
CGTCCAGGGTGAAGGAACAG+TGG 0.639116 3_3:-56222051 Msa0459580:intron
GCCAAGCATTGTCACAATCG+AGG 0.639692 3_3:-56222994 Msa0459580:CDS
GCGAGAGCGTCTAAGCCAGA+AGG 0.639894 3_3:+56221500 None:intergenic
GGGTGGGGTTTACGATCTGG+TGG 0.639993 3_3:-56228188 Msa0459580:CDS
ATCCATGGCCTGTATACAAG+GGG 0.641805 3_3:+56223844 None:intergenic
CCAGGAGGCCGAGCAATACG+TGG 0.643456 3_3:+56224840 None:intergenic
TTCGAGTATCTTGACTTCGG+CGG 0.643639 3_3:-56226581 Msa0459580:CDS
GACGAGTCAGATACCAATGG+TGG 0.646113 3_3:-56221206 Msa0459580:CDS
TCGACACAATTACTTCCCGA+TGG 0.646900 3_3:+56223296 None:intergenic
AATCCTTTGGAAAACGAAGG+AGG 0.647862 3_3:-56221164 Msa0459580:CDS
AATCCATGGCCTGTATACAA+GGG 0.649731 3_3:+56223843 None:intergenic
ATGCTTGGCTTGACACTGGG+CGG 0.650343 3_3:+56223008 None:intergenic
GTATCCCCTTCCCTGAATGA+CGG 0.651045 3_3:+56225173 None:intergenic
AAAGTTAATGACTGAACAGG+CGG 0.651260 3_3:+56225128 None:intergenic
CAGTCCGCTGTCAAAATGAG+CGG 0.652887 3_3:+56225331 None:intergenic
AGAGTGTAACATTTGCAACA+AGG 0.654770 3_3:-56226731 Msa0459580:intron
GCTCCAGTAACCAAATGTGA+AGG 0.655029 3_3:+56223218 None:intergenic
ATTAATATGAACCAAAATGG+CGG 0.658414 3_3:-56221014 Msa0459580:CDS
ACTAAATAGAGGTCAAGTTG+AGG 0.658544 3_3:-56221141 Msa0459580:CDS
CTCAAACAATGGCACTACTG+TGG 0.661874 3_3:+56224231 None:intergenic
GTTAATACTGAAATGCAGGA+AGG 0.667799 3_3:-56220981 Msa0459580:CDS
AAACATCCTAGACACCGTCC+CGG 0.669264 3_3:-56221413 Msa0459580:CDS
TCTGGTGGAGAGACTACAGA+CGG 0.671314 3_3:-56224987 Msa0459580:CDS
TGTGTTTGGGAAACCCGTCA+GGG 0.671474 3_3:-56225028 Msa0459580:CDS
GCATGCATGAATCAAATGCG+AGG 0.672254 3_3:-56225064 Msa0459580:CDS
CCGTTCACCAAATGGTAACG+GGG 0.672434 3_3:-56223267 Msa0459580:CDS
TTGCGGGTCCAAGATGTGAA+GGG 0.674468 3_3:-56223938 Msa0459580:CDS
GTGTGCATTCAGCCACCAAG+CGG 0.679152 3_3:-56221377 Msa0459580:CDS
GTTCTGCAGCCTATCCACAG+TGG 0.681151 3_3:-56226626 Msa0459580:intron
CACACAATACAAGAACAGCC+GGG 0.682528 3_3:+56221395 None:intergenic
ACATCTGCACATTCTAACGG+CGG 0.694375 3_3:-56223362 Msa0459580:CDS
GTTGACGAGTCAGATACCAA+TGG 0.701417 3_3:-56221209 Msa0459580:CDS
TGAGTGCCAGTGATGCAGGT+CGG 0.705207 3_3:-56224201 Msa0459580:CDS
GTGTCTAGGATGTTTCGTGG+TGG 0.708007 3_3:+56221421 None:intergenic
TTACCCCTCCCATCACCAGG+AGG 0.730237 3_3:+56224825 None:intergenic
TAGATACTACGCATCCACTG+TGG 0.761062 3_3:+56226612 None:intergenic
TTTAGTCGGATAGATCCTGG+GGG 0.790573 3_3:-56223554 Msa0459580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTAAGTATAAAAATATA+TGG - chr3_3:56221830-56221849 Msa0459580:intron 10.0%
!! CAATTAATATAATCTAAAAA+AGG + chr3_3:56221888-56221907 None:intergenic 10.0%
!! AATTATAAATTTCAGTATAA+AGG + chr3_3:56224612-56224631 None:intergenic 10.0%
!! ATTAATATGATAATAATCAA+CGG + chr3_3:56224724-56224743 None:intergenic 10.0%
!! TTTACATCAAAAACAATAAA+GGG + chr3_3:56220955-56220974 None:intergenic 15.0%
!! ATTTACATCAAAAACAATAA+AGG + chr3_3:56220956-56220975 None:intergenic 15.0%
!!! TCATGAATCTTAATTTTTTT+TGG - chr3_3:56221288-56221307 Msa0459580:CDS 15.0%
!!! CATGAATCTTAATTTTTTTT+GGG - chr3_3:56221289-56221308 Msa0459580:CDS 15.0%
!! ATTAAACAAAAATTAACCAT+AGG + chr3_3:56222882-56222901 None:intergenic 15.0%
!! TAACAACTAATTACTAATAT+TGG - chr3_3:56223501-56223520 Msa0459580:intron 15.0%
!! TGAACATAATTAGAAAAATA+AGG + chr3_3:56223745-56223764 None:intergenic 15.0%
!!! ACTGAAATTTATAATTTTAG+AGG - chr3_3:56224616-56224635 Msa0459580:intron 15.0%
!!! CTGAAATTTATAATTTTAGA+GGG - chr3_3:56224617-56224636 Msa0459580:intron 15.0%
!!! TTTAAAATTTATGAAGTTTG+TGG - chr3_3:56224870-56224889 Msa0459580:CDS 15.0%
!!! TTTAAAACGAGTTATTAAAT+AGG - chr3_3:56224950-56224969 Msa0459580:CDS 15.0%
!! TTAAAACGAGTTATTAAATA+GGG - chr3_3:56224951-56224970 Msa0459580:CDS 15.0%
!!! CTTGGTTAATGTTTTTTTTT+TGG - chr3_3:56220910-56220929 Msa0459580:CDS 20.0%
!!! AAATTTTGAAACTTTATGCA+TGG - chr3_3:56220972-56220991 Msa0459580:CDS 20.0%
!!! TTTTGATTTGATTTTGACTT+TGG - chr3_3:56221037-56221056 Msa0459580:CDS 20.0%
!!! AAATTTGGAATTTTGATTGA+TGG - chr3_3:56221080-56221099 Msa0459580:CDS 20.0%
!!! AATTTGGAATTTTGATTGAT+GGG - chr3_3:56221081-56221100 Msa0459580:CDS 20.0%
!! TATCATCTAATTTAGTCATT+AGG + chr3_3:56221634-56221653 None:intergenic 20.0%
!! TAATGACTAAATTAGATGAT+AGG - chr3_3:56221633-56221652 Msa0459580:intron 20.0%
!! TATTAAATGCTTAACTGTAT+AGG - chr3_3:56221908-56221927 Msa0459580:intron 20.0%
!! ATCATAAATAAACCATTTGA+TGG + chr3_3:56222058-56222077 None:intergenic 20.0%
!! TCAAATGGTTTATTTATGAT+AGG - chr3_3:56222058-56222077 Msa0459580:intron 20.0%
!! TTAAGTTCTATTTGGATTAA+TGG + chr3_3:56222414-56222433 None:intergenic 20.0%
!! GAATATACTTAAGTTCTATT+TGG + chr3_3:56222422-56222441 None:intergenic 20.0%
!! TAAACTTACCATATTTAGTT+GGG + chr3_3:56222815-56222834 None:intergenic 20.0%
!! TTAAACTTACCATATTTAGT+TGG + chr3_3:56222816-56222835 None:intergenic 20.0%
!!! GTTTCGAAGATTTTTTTTAA+TGG - chr3_3:56223155-56223174 Msa0459580:CDS 20.0%
!! ATGTAAAAATGACAATTTCA+AGG - chr3_3:56223321-56223340 Msa0459580:CDS 20.0%
!! ATAAGTTCTTTATCCAAAAT+GGG + chr3_3:56223374-56223393 None:intergenic 20.0%
!! AATAAGTTCTTTATCCAAAA+TGG + chr3_3:56223375-56223394 None:intergenic 20.0%
!!! ATAATAAGAGCTTTATGTAT+AGG - chr3_3:56223406-56223425 Msa0459580:intron 20.0%
!!! TAATAAGAGCTTTATGTATA+GGG - chr3_3:56223407-56223426 Msa0459580:intron 20.0%
!! TAGTAATTAGTTGTTATGTT+CGG + chr3_3:56223497-56223516 None:intergenic 20.0%
!!! TAAACACTTTTTTTTTGCAA+CGG + chr3_3:56223527-56223546 None:intergenic 20.0%
!!! TTTTTCAGTTTCTATATTCA+TGG + chr3_3:56224466-56224485 None:intergenic 20.0%
!! ATGAATATAGAAACTGAAAA+AGG - chr3_3:56224465-56224484 Msa0459580:intron 20.0%
!! TGAATATAGAAACTGAAAAA+GGG - chr3_3:56224466-56224485 Msa0459580:intron 20.0%
!! TTCTGATTTATATGAAACTT+TGG + chr3_3:56224757-56224776 None:intergenic 20.0%
!!! AATAAGAGCATTTAATTTGA+TGG - chr3_3:56224906-56224925 Msa0459580:CDS 20.0%
!! TAAAGATAAAAAAGGAAACA+CGG + chr3_3:56225240-56225259 None:intergenic 20.0%
!! CATTCAGATAAAGATAAAAA+AGG + chr3_3:56225248-56225267 None:intergenic 20.0%
!! AAATATCATGAACAGTAAAA+TGG + chr3_3:56225880-56225899 None:intergenic 20.0%
!! CGGTTATTGTTTAAATAAAT+AGG - chr3_3:56225948-56225967 Msa0459580:intron 20.0%
!! TTTGTTTATTAGCTATTGTA+AGG - chr3_3:56226437-56226456 Msa0459580:intron 20.0%
!! GTTGCATTCATAATATTATT+TGG - chr3_3:56227650-56227669 Msa0459580:intron 20.0%
!! AAAACTTAGTGATCATATAT+GGG - chr3_3:56228299-56228318 Msa0459580:intron 20.0%
!! CATATTAATATGAACCAAAA+TGG - chr3_3:56228324-56228343 Msa0459580:intron 20.0%
!!! AGTTTGCTTTATTTTTCAAA+AGG - chr3_3:56228598-56228617 Msa0459580:intron 20.0%
!!! GTTTGCTTTATTTTTCAAAA+GGG - chr3_3:56228599-56228618 Msa0459580:intron 20.0%
!!! TTTTTATTCAAGAGTGAAAA+AGG - chr3_3:56228690-56228709 Msa0459580:five_prime_UTR 20.0%
!!! TTTTATTCAAGAGTGAAAAA+GGG - chr3_3:56228691-56228710 Msa0459580:five_prime_UTR 20.0%
! CTCAAATCTATGTATTCAAA+AGG + chr3_3:56220784-56220803 None:intergenic 25.0%
! ATTAATGAGTTTGAGGATTA+TGG - chr3_3:56221004-56221023 Msa0459580:CDS 25.0%
! TTAATGAGTTTGAGGATTAT+GGG - chr3_3:56221005-56221024 Msa0459580:CDS 25.0%
!!! TTTGATTTTGACTTTGGTTT+TGG - chr3_3:56221043-56221062 Msa0459580:CDS 25.0%
!!! TTGATTTTGACTTTGGTTTT+GGG - chr3_3:56221044-56221063 Msa0459580:CDS 25.0%
! CATAGCAAAATCAAAGAAAA+AGG + chr3_3:56221218-56221237 None:intergenic 25.0%
!! TATGATTAGATTCTCTAAGA+GGG - chr3_3:56221234-56221253 Msa0459580:CDS 25.0%
!!! TAAGAGGGTAATTTTAGTTT+TGG - chr3_3:56221249-56221268 Msa0459580:CDS 25.0%
!!! AAGAGGGTAATTTTAGTTTT+GGG - chr3_3:56221250-56221269 Msa0459580:CDS 25.0%
!!! TGGGATTTTGATAATCTAAT+TGG - chr3_3:56221308-56221327 Msa0459580:CDS 25.0%
! AGGATCAATGTATCTAATTT+GGG - chr3_3:56221601-56221620 Msa0459580:intron 25.0%
!!! TATTCTGTTGACTGATTTTT+CGG - chr3_3:56221752-56221771 Msa0459580:intron 25.0%
! TTTATACTTACAATGTGTCA+AGG + chr3_3:56221824-56221843 None:intergenic 25.0%
! AGGAAATATATTTGCCATAT+TGG + chr3_3:56221868-56221887 None:intergenic 25.0%
!! TTTTAGATACTTCCATCAAA+TGG - chr3_3:56222043-56222062 Msa0459580:CDS 25.0%
!! AAAACCAAAAGTATAAGAGA+AGG + chr3_3:56222463-56222482 None:intergenic 25.0%
! AAATACTTCCCAACTAAATA+TGG - chr3_3:56222804-56222823 Msa0459580:intron 25.0%
! GGAAAGAAAAAAAATCAACA+GGG + chr3_3:56222850-56222869 None:intergenic 25.0%
! ATTAACCATAGGTTACAAAT+GGG + chr3_3:56222871-56222890 None:intergenic 25.0%
! AATTAACCATAGGTTACAAA+TGG + chr3_3:56222872-56222891 None:intergenic 25.0%
! CACATTATTGTATACGATAT+TGG - chr3_3:56222989-56223008 Msa0459580:CDS 25.0%
! TATCACTAAAATAATCACGA+AGG + chr3_3:56223028-56223047 None:intergenic 25.0%
!!! TCGTGATTATTTTAGTGATA+TGG - chr3_3:56223028-56223047 Msa0459580:CDS 25.0%
!! TTTGTGTTATTACGTTTACT+TGG - chr3_3:56223190-56223209 Msa0459580:CDS 25.0%
! AGTAATTAGTTGTTATGTTC+GGG + chr3_3:56223496-56223515 None:intergenic 25.0%
! GTAATACTGAAAATCCTAAA+TGG - chr3_3:56223947-56223966 Msa0459580:CDS 25.0%
!! AATATCCCTTGCATTATTTT+GGG + chr3_3:56223986-56224005 None:intergenic 25.0%
!! TTTATGAGTAATGTTGATGA+AGG - chr3_3:56224033-56224052 Msa0459580:intron 25.0%
!! GATGTAATCATGTTGTTTAT+CGG + chr3_3:56224120-56224139 None:intergenic 25.0%
! AACAACATGATTACATCTAA+TGG - chr3_3:56224123-56224142 Msa0459580:intron 25.0%
! ACAACATGATTACATCTAAT+GGG - chr3_3:56224124-56224143 Msa0459580:intron 25.0%
! GATTTATATGAAACTTTGGA+TGG + chr3_3:56224753-56224772 None:intergenic 25.0%
! ATTAAATGCTCTTATTGAGT+AGG + chr3_3:56224902-56224921 None:intergenic 25.0%
! AGAACTATAAATTATGAGCA+GGG + chr3_3:56225013-56225032 None:intergenic 25.0%
! AAGAACTATAAATTATGAGC+AGG + chr3_3:56225014-56225033 None:intergenic 25.0%
! TATCTTTATCTGAATGAGTA+TGG - chr3_3:56225252-56225271 Msa0459580:CDS 25.0%
!! ATTTTGCAGTTACATTTAGT+CGG - chr3_3:56225773-56225792 Msa0459580:intron 25.0%
!!! ACATCTTTACTTTTTGTTGT+TGG - chr3_3:56225912-56225931 Msa0459580:intron 25.0%
!! TTGTTGGTGAATATGATTAA+CGG - chr3_3:56225928-56225947 Msa0459580:intron 25.0%
!!! TATTGGTAATGATGATTCTA+TGG - chr3_3:56226266-56226285 Msa0459580:intron 25.0%
! GAATGTAAACTGATATAGTT+TGG - chr3_3:56226463-56226482 Msa0459580:intron 25.0%
! ATCCAAATATGCAAAAAGTT+TGG + chr3_3:56226611-56226630 None:intergenic 25.0%
!! AACTTTTTGCATATTTGGAT+TGG - chr3_3:56226611-56226630 Msa0459580:CDS 25.0%
!! TTTTCATAAACTCTCATGTA+GGG + chr3_3:56226745-56226764 None:intergenic 25.0%
! TATTCTAGATACAACTAACA+TGG + chr3_3:56226942-56226961 None:intergenic 25.0%
! TATAAGTGCTTATGTATGAT+TGG - chr3_3:56226980-56226999 Msa0459580:intron 25.0%
!! AACTGTTTTCGGATTATTAT+AGG + chr3_3:56227086-56227105 None:intergenic 25.0%
!!! TTTTGAAAATTCCGTGAAAA+CGG + chr3_3:56227117-56227136 None:intergenic 25.0%
!! TAAGTTGAAATAAGCTCTTT+CGG - chr3_3:56227165-56227184 Msa0459580:intron 25.0%
! GGTAATACTGGTATTATTAA+TGG + chr3_3:56227419-56227438 None:intergenic 25.0%
!!! AATCTTTTGAAATCTAGCAA+AGG - chr3_3:56227565-56227584 Msa0459580:intron 25.0%
! CAAAGATCTTATCAAAAACA+CGG + chr3_3:56227605-56227624 None:intergenic 25.0%
! CAAAACTTAGTGATCATATA+TGG - chr3_3:56228298-56228317 Msa0459580:intron 25.0%
! ATTAATATGAACCAAAATGG+CGG - chr3_3:56228327-56228346 Msa0459580:intron 25.0%
!!! AAAAATTCTAGCTCAAACAA+GGG + chr3_3:56228548-56228567 None:intergenic 25.0%
!!! TAAAAATTCTAGCTCAAACA+AGG + chr3_3:56228549-56228568 None:intergenic 25.0%
! TTTATTCAAGAGTGAAAAAG+GGG - chr3_3:56228692-56228711 Msa0459580:five_prime_UTR 25.0%
! AGCAAAAATAAAATGGATAG+TGG + chr3_3:56228755-56228774 None:intergenic 25.0%
!!! CTATCCATTTTATTTTTGCT+TGG - chr3_3:56228755-56228774 Msa0459580:five_prime_UTR 25.0%
! TTCACCAAGCAAAAATAAAA+TGG + chr3_3:56228762-56228781 None:intergenic 25.0%
AATATAAGACATGAGCAATG+AGG + chr3_3:56220759-56220778 None:intergenic 30.0%
! AACCTAGGATTTAGGATAAT+GGG + chr3_3:56220858-56220877 None:intergenic 30.0%
! AAACCTAGGATTTAGGATAA+TGG + chr3_3:56220859-56220878 None:intergenic 30.0%
GTGAGTTATTAATGAGTTTG+AGG - chr3_3:56220997-56221016 Msa0459580:CDS 30.0%
!! GGTATTTTTCAGCTGAAATT+TGG - chr3_3:56221065-56221084 Msa0459580:CDS 30.0%
CTATGATTAGATTCTCTAAG+AGG - chr3_3:56221233-56221252 Msa0459580:CDS 30.0%
!!! AGAGGGTAATTTTAGTTTTG+GGG - chr3_3:56221251-56221270 Msa0459580:CDS 30.0%
TATATCCTTTCTTACCATTC+CGG - chr3_3:56221347-56221366 Msa0459580:CDS 30.0%
TATGTTGTGATTGTGTATTG+TGG - chr3_3:56221529-56221548 Msa0459580:CDS 30.0%
GAGGATCAATGTATCTAATT+TGG - chr3_3:56221600-56221619 Msa0459580:intron 30.0%
! GGTAATTTTAGATGCCAATA+TGG - chr3_3:56221851-56221870 Msa0459580:intron 30.0%
ATCCAGTCAACTTAATTAAG+AGG - chr3_3:56221973-56221992 Msa0459580:CDS 30.0%
TCCAGTCAACTTAATTAAGA+GGG - chr3_3:56221974-56221993 Msa0459580:CDS 30.0%
! CTTGCAATTTTGCAAATACA+GGG + chr3_3:56222369-56222388 None:intergenic 30.0%
! TCTTCCTTCTCTTATACTTT+TGG - chr3_3:56222456-56222475 Msa0459580:intron 30.0%
CAAAAAACTGAACTCTCAAA+GGG + chr3_3:56222557-56222576 None:intergenic 30.0%
ACAAAAAACTGAACTCTCAA+AGG + chr3_3:56222558-56222577 None:intergenic 30.0%
TCATTGAAATCTGTTTGACT+TGG - chr3_3:56222693-56222712 Msa0459580:intron 30.0%
GGGAAAGAAAAAAAATCAAC+AGG + chr3_3:56222851-56222870 None:intergenic 30.0%
CGGTTTATGATAGAACATTA+TGG - chr3_3:56223073-56223092 Msa0459580:CDS 30.0%
CGTAATAACACAAAAATTGC+TGG + chr3_3:56223184-56223203 None:intergenic 30.0%
!! TTACTTGGCTTTTGAATGTA+TGG - chr3_3:56223205-56223224 Msa0459580:CDS 30.0%
!! TACTTGGCTTTTGAATGTAT+GGG - chr3_3:56223206-56223225 Msa0459580:CDS 30.0%
!!! CTTTTTTTCGTAAGATCTCT+AGG + chr3_3:56223611-56223630 None:intergenic 30.0%
AAAAAGCTGAATACAGACTA+TGG - chr3_3:56223625-56223644 Msa0459580:intron 30.0%
AAACTGTTAAAGAGAGCTTA+AGG + chr3_3:56223677-56223696 None:intergenic 30.0%
!!! ATTATTTTGGGTCGATGAAA+CGG + chr3_3:56223974-56223993 None:intergenic 30.0%
! GAATATCCCTTGCATTATTT+TGG + chr3_3:56223987-56224006 None:intergenic 30.0%
GGAAAAACAATCAAGAAGTT+AGG - chr3_3:56224145-56224164 Msa0459580:intron 30.0%
! TGGTCTATTATTTTCTAACG+TGG + chr3_3:56224241-56224260 None:intergenic 30.0%
TAGAAAATAATAGACCAGCA+TGG - chr3_3:56224244-56224263 Msa0459580:intron 30.0%
AGAAAATAATAGACCAGCAT+GGG - chr3_3:56224245-56224264 Msa0459580:intron 30.0%
! TTTAACAGTTTGGGAAGTAT+AGG + chr3_3:56224432-56224451 None:intergenic 30.0%
CAGTTTCTATATTCATGGTA+AGG + chr3_3:56224461-56224480 None:intergenic 30.0%
ATCAGTTACTTCCTAGATAT+TGG - chr3_3:56224541-56224560 Msa0459580:intron 30.0%
TAGCTATGTAATATGACAAC+TGG - chr3_3:56224782-56224801 Msa0459580:CDS 30.0%
CGTCAAATTGATGCATAATA+AGG + chr3_3:56224826-56224845 None:intergenic 30.0%
! GACGTTACTTTATGAAGTAT+CGG - chr3_3:56224842-56224861 Msa0459580:CDS 30.0%
! ACGTTACTTTATGAAGTATC+GGG - chr3_3:56224843-56224862 Msa0459580:CDS 30.0%
!! AGAGCATTTAATTTGATGGT+TGG - chr3_3:56224910-56224929 Msa0459580:CDS 30.0%
AACTGTTATCGTTACATCAA+GGG + chr3_3:56225084-56225103 None:intergenic 30.0%
AAACTGTTATCGTTACATCA+AGG + chr3_3:56225085-56225104 None:intergenic 30.0%
CGAAAAACAACTACAGAAAT+TGG + chr3_3:56225280-56225299 None:intergenic 30.0%
TGAACTTCTTACAAAATTGC+AGG - chr3_3:56225342-56225361 Msa0459580:CDS 30.0%
! GGACTTTTCAATTCAGATTT+TGG - chr3_3:56225434-56225453 Msa0459580:intron 30.0%
GCAACAGATCAATTCTATAA+GGG + chr3_3:56225649-56225668 None:intergenic 30.0%
TGCAACAGATCAATTCTATA+AGG + chr3_3:56225650-56225669 None:intergenic 30.0%
!!! TCTCTGAAGCTGAATTTTTT+TGG + chr3_3:56226203-56226222 None:intergenic 30.0%
!! ATATTGGCCTTAAAAGTAAG+AGG - chr3_3:56226238-56226257 Msa0459580:intron 30.0%
!! TAAGCAACCTCTTACTTTTA+AGG + chr3_3:56226248-56226267 None:intergenic 30.0%
AAAAGTAAGAGGTTGCTTAT+TGG - chr3_3:56226249-56226268 Msa0459580:intron 30.0%
AACTGTGCTACATTACATTT+AGG - chr3_3:56226528-56226547 Msa0459580:intron 30.0%
TTGTTCTCTTTCCAAAAACT+GGG + chr3_3:56226558-56226577 None:intergenic 30.0%
ATTGTTCTCTTTCCAAAAAC+TGG + chr3_3:56226559-56226578 None:intergenic 30.0%
! GTCCAAACTTTTTGCATATT+TGG - chr3_3:56226606-56226625 Msa0459580:CDS 30.0%
! GTTTTCATAAACTCTCATGT+AGG + chr3_3:56226746-56226765 None:intergenic 30.0%
ATTAAGCTGTGTTTACAAAC+AGG - chr3_3:56226858-56226877 Msa0459580:intron 30.0%
TTAAGCTGTGTTTACAAACA+GGG - chr3_3:56226859-56226878 Msa0459580:intron 30.0%
AGCTGTTCGAAGAAATTTAT+AGG + chr3_3:56226893-56226912 None:intergenic 30.0%
!!! ACTACAGTTTGATTTTTTCC+TGG - chr3_3:56226914-56226933 Msa0459580:intron 30.0%
CTATAGTTGAAGAGAAAATG+AGG - chr3_3:56227006-56227025 Msa0459580:intron 30.0%
TATTGCATAACATAATCACG+TGG + chr3_3:56227147-56227166 None:intergenic 30.0%
TGAAGCATAAATAGGATCAA+AGG + chr3_3:56227196-56227215 None:intergenic 30.0%
TGCTTTCATGAAGCATAAAT+AGG + chr3_3:56227204-56227223 None:intergenic 30.0%
!! TTATGCTTCATGAAAGCATT+TGG - chr3_3:56227206-56227225 Msa0459580:intron 30.0%
! TTGGAATTATCATGATGATG+TGG - chr3_3:56227225-56227244 Msa0459580:intron 30.0%
! AATGTGATGATTGCTCTAAA+TGG - chr3_3:56227317-56227336 Msa0459580:intron 30.0%
!!! TACCAGTATTACCACTTTTT+TGG - chr3_3:56227426-56227445 Msa0459580:intron 30.0%
TTCCAAAAAAGTGGTAATAC+TGG + chr3_3:56227431-56227450 None:intergenic 30.0%
TGGTCTAAATTCCAAAAAAG+TGG + chr3_3:56227440-56227459 None:intergenic 30.0%
AATTTAGACCAGTCTTCATA+TGG - chr3_3:56227449-56227468 Msa0459580:intron 30.0%
ATTTAGACCAGTCTTCATAT+GGG - chr3_3:56227450-56227469 Msa0459580:intron 30.0%
TATTATTATACTCACCAGAG+AGG + chr3_3:56227728-56227747 None:intergenic 30.0%
TAATAATTCCTGAATCCTTC+TGG - chr3_3:56227746-56227765 Msa0459580:intron 30.0%
! CAAGAGATTTTCTCCTAAAA+CGG + chr3_3:56227875-56227894 None:intergenic 30.0%
!!! GTTTTAGGAGAAAATCTCTT+GGG - chr3_3:56227874-56227893 Msa0459580:intron 30.0%
!!! GTTGTGAATGTGTTCTTTTT+TGG + chr3_3:56228109-56228128 None:intergenic 30.0%
ATTTCAGTATTAACGGTTCT+TGG + chr3_3:56228354-56228373 None:intergenic 30.0%
TTCCTGCATTTCAGTATTAA+CGG + chr3_3:56228361-56228380 None:intergenic 30.0%
TTATTCAAGAGTGAAAAAGG+GGG - chr3_3:56228693-56228712 Msa0459580:five_prime_UTR 30.0%
!! TTTTCTCTCTCTAAAAACCC+AGG - chr3_3:56220715-56220734 Msa0459580:three_prime_UTR 35.0%
GTAGAAGAAGAAATTGACCT+GGG + chr3_3:56220735-56220754 None:intergenic 35.0%
TGTAGAAGAAGAAATTGACC+TGG + chr3_3:56220736-56220755 None:intergenic 35.0%
CAAAAGGAAACCTAGGATTT+AGG + chr3_3:56220866-56220885 None:intergenic 35.0%
! AAATCCTAGGTTTCCTTTTG+TGG - chr3_3:56220866-56220885 Msa0459580:CDS 35.0%
! AATCCTAGGTTTCCTTTTGT+GGG - chr3_3:56220867-56220886 Msa0459580:CDS 35.0%
TGTGTTCATGAATGGAAGAA+AGG - chr3_3:56221132-56221151 Msa0459580:CDS 35.0%
GTGTTCATGAATGGAAGAAA+GGG - chr3_3:56221133-56221152 Msa0459580:CDS 35.0%
ATATCCTTTCTTACCATTCC+GGG - chr3_3:56221348-56221367 Msa0459580:CDS 35.0%
TGACTAAAATGTGAGCTGTT+TGG + chr3_3:56221408-56221427 None:intergenic 35.0%
TGATTGTGTATTGTGGAAGT+AGG - chr3_3:56221536-56221555 Msa0459580:CDS 35.0%
!! CTTATTGTTGTTTGATGACG+AGG - chr3_3:56221581-56221600 Msa0459580:intron 35.0%
ATTCCTCCATAAATCTAGCA+TGG + chr3_3:56221788-56221807 None:intergenic 35.0%
ATGCTAGATTTATGGAGGAA+TGG - chr3_3:56221787-56221806 Msa0459580:CDS 35.0%
!! TCCCTCTTAATTAAGTTGAC+TGG + chr3_3:56221978-56221997 None:intergenic 35.0%
AGGTGTAGCTCATTAACTAA+TGG + chr3_3:56222203-56222222 None:intergenic 35.0%
TCTAACCAAGAATTGAACTC+AGG + chr3_3:56222248-56222267 None:intergenic 35.0%
CTCATAACCGTAGATTACTA+GGG - chr3_3:56222278-56222297 Msa0459580:intron 35.0%
AATACAGGGTACACATTACA+GGG + chr3_3:56222355-56222374 None:intergenic 35.0%
AAATACAGGGTACACATTAC+AGG + chr3_3:56222356-56222375 None:intergenic 35.0%
! GCTTGCAATTTTGCAAATAC+AGG + chr3_3:56222370-56222389 None:intergenic 35.0%
AAATTCCATCGTCAACAAAC+TGG - chr3_3:56222581-56222600 Msa0459580:intron 35.0%
AGAGTGTAACATTTGCAACA+AGG - chr3_3:56222610-56222629 Msa0459580:intron 35.0%
CAAACAGATTTCAATGAGTG+AGG + chr3_3:56222690-56222709 None:intergenic 35.0%
TCTTTCCCATTTGTAACCTA+TGG - chr3_3:56222863-56222882 Msa0459580:intron 35.0%
ATAATCACGAAGGATAATCC+TGG + chr3_3:56223018-56223037 None:intergenic 35.0%
! CAGCATTTTGTGAGTTGTAT+CGG - chr3_3:56223053-56223072 Msa0459580:CDS 35.0%
!!! GAAGCTTTTGCTTTAGAACT+TGG - chr3_3:56223348-56223367 Msa0459580:CDS 35.0%
GAATACAGACTATGGACAAT+TGG - chr3_3:56223633-56223652 Msa0459580:intron 35.0%
GCTTATTTGAGCTTATCTAC+TGG + chr3_3:56223714-56223733 None:intergenic 35.0%
!!! TTATTTTGGGTCGATGAAAC+GGG + chr3_3:56223973-56223992 None:intergenic 35.0%
ATCGACCCAAAATAATGCAA+GGG - chr3_3:56223978-56223997 Msa0459580:CDS 35.0%
AAAGTTAATGACTGAACAGG+CGG + chr3_3:56224216-56224235 None:intergenic 35.0%
GCAAAAGTTAATGACTGAAC+AGG + chr3_3:56224219-56224238 None:intergenic 35.0%
CCCAAACACATATTCAAAGA+CGG + chr3_3:56224303-56224322 None:intergenic 35.0%
CCGTCTTTGAATATGTGTTT+GGG - chr3_3:56224300-56224319 Msa0459580:intron 35.0%
! TATCTCCTCCTTTTCATCAA+GGG - chr3_3:56224394-56224413 Msa0459580:intron 35.0%
TTCTATATTCATGGTAAGGC+CGG + chr3_3:56224457-56224476 None:intergenic 35.0%
! TAGATATTGGCCTAGGATTA+CGG - chr3_3:56224554-56224573 Msa0459580:intron 35.0%
CAGTGTTTATAATGAGCAAG+TGG + chr3_3:56224685-56224704 None:intergenic 35.0%
AAAAGGAAACACGGAAAACA+AGG + chr3_3:56225231-56225250 None:intergenic 35.0%
ATTCATTACCCTTCACATCT+TGG + chr3_3:56225414-56225433 None:intergenic 35.0%
AAGATGTGAAGGGTAATGAA+TGG - chr3_3:56225413-56225432 Msa0459580:intron 35.0%
! TACATCCTGCTGTTGTTATT+AGG + chr3_3:56225460-56225479 None:intergenic 35.0%
ATACTGGTATGCATCAATCT+AGG - chr3_3:56225533-56225552 Msa0459580:intron 35.0%
TACTGGTATGCATCAATCTA+GGG - chr3_3:56225534-56225553 Msa0459580:intron 35.0%
ATCAAATTCCGTAGATACAC+AGG - chr3_3:56225837-56225856 Msa0459580:intron 35.0%
TCTACATCTGCACATTCTAA+CGG - chr3_3:56225976-56225995 Msa0459580:intron 35.0%
AGTAACCAAATGTGAAGGTT+CGG + chr3_3:56226121-56226140 None:intergenic 35.0%
!!! GAAGCTGAATTTTTTTGGTC+AGG + chr3_3:56226198-56226217 None:intergenic 35.0%
AAGAAGAGGACTCGAAATAT+TGG - chr3_3:56226222-56226241 Msa0459580:intron 35.0%
TATGGAGTTGAGACTTACAT+GGG - chr3_3:56226284-56226303 Msa0459580:intron 35.0%
CATGTTCGAATTATATCACG+TGG - chr3_3:56226491-56226510 Msa0459580:intron 35.0%
TGTTCTCTTTCCAAAAACTG+GGG + chr3_3:56226557-56226576 None:intergenic 35.0%
TCACCGAAATAGCTTATACA+TGG - chr3_3:56226813-56226832 Msa0459580:intron 35.0%
CACCGAAATAGCTTATACAT+GGG - chr3_3:56226814-56226833 Msa0459580:intron 35.0%
TGCCCATGTATAAGCTATTT+CGG + chr3_3:56226819-56226838 None:intergenic 35.0%
TCTGCATAAGCTTGTATATG+TGG - chr3_3:56227035-56227054 Msa0459580:intron 35.0%
TATGTCAACTATTTCGTCCA+GGG - chr3_3:56227276-56227295 Msa0459580:intron 35.0%
CTCTAAATGGAGAAAGTTAC+CGG - chr3_3:56227330-56227349 Msa0459580:intron 35.0%
TTATCAAAAACACGGACAGA+AGG + chr3_3:56227597-56227616 None:intergenic 35.0%
AAATGTAACCAGAAGGATTC+AGG + chr3_3:56227757-56227776 None:intergenic 35.0%
! TGAATCCTTCTGGTTACATT+TGG - chr3_3:56227756-56227775 Msa0459580:intron 35.0%
!! TCACAGATTTTAAGAAGCGA+CGG - chr3_3:56227782-56227801 Msa0459580:intron 35.0%
!!! CGTTTTAGGAGAAAATCTCT+TGG - chr3_3:56227873-56227892 Msa0459580:intron 35.0%
!!! GTGAATGTGTTCTTTTTTGG+CGG + chr3_3:56228106-56228125 None:intergenic 35.0%
! ACTAAATAGAGGTCAAGTTG+AGG - chr3_3:56228200-56228219 Msa0459580:CDS 35.0%
AACCGTTAATACTGAAATGC+AGG - chr3_3:56228356-56228375 Msa0459580:intron 35.0%
GTTAATACTGAAATGCAGGA+AGG - chr3_3:56228360-56228379 Msa0459580:intron 35.0%
TCTTTCTTTGTTCCCAACAT+TGG + chr3_3:56228460-56228479 None:intergenic 35.0%
GAACAAAGAAAGAAGAGATG+AGG - chr3_3:56228467-56228486 Msa0459580:intron 35.0%
AGTGAAAAGAATCTGTCTTG+AGG - chr3_3:56228510-56228529 Msa0459580:intron 35.0%
! AAATGGATAGTGGTAAAGAC+AGG + chr3_3:56228745-56228764 None:intergenic 35.0%
AGAAAACGTGAAGTGGGTAT+GGG + chr3_3:56220701-56220720 None:intergenic 40.0%
AGAGAGAGAAAACGTGAAGT+GGG + chr3_3:56220707-56220726 None:intergenic 40.0%
TAGAGAGAGAAAACGTGAAG+TGG + chr3_3:56220708-56220727 None:intergenic 40.0%
GACCCATTATCCTAAATCCT+AGG - chr3_3:56220853-56220872 Msa0459580:CDS 40.0%
AACCAAGTCAAAGGTTGTCT+TGG - chr3_3:56220892-56220911 Msa0459580:CDS 40.0%
AACCAAGACAACCTTTGACT+TGG + chr3_3:56220897-56220916 None:intergenic 40.0%
!! TGATTGATGGGTTCTGACAT+TGG - chr3_3:56221093-56221112 Msa0459580:CDS 40.0%
TCTGACATTGGTATGGTGAA+TGG - chr3_3:56221105-56221124 Msa0459580:CDS 40.0%
ATGGTTCGTGTGTTCATGAA+TGG - chr3_3:56221124-56221143 Msa0459580:CDS 40.0%
TTCATGAATGGAAGAAAGGG+TGG - chr3_3:56221136-56221155 Msa0459580:CDS 40.0%
TCATGAATGGAAGAAAGGGT+GGG - chr3_3:56221137-56221156 Msa0459580:CDS 40.0%
AAATCCCGGAATGGTAAGAA+AGG + chr3_3:56221355-56221374 None:intergenic 40.0%
CAAACACAACCAGAAAATCC+CGG + chr3_3:56221369-56221388 None:intergenic 40.0%
TGTATTGTGGAAGTAGGAGT+AGG - chr3_3:56221542-56221561 Msa0459580:CDS 40.0%
TTCCTGCCATGCTAGATTTA+TGG - chr3_3:56221779-56221798 Msa0459580:CDS 40.0%
TTTATGGAGGAATGGAAGAG+TGG - chr3_3:56221795-56221814 Msa0459580:CDS 40.0%
GGATCACATATCACACACAA+GGG + chr3_3:56221957-56221976 None:intergenic 40.0%
TGGATCACATATCACACACA+AGG + chr3_3:56221958-56221977 None:intergenic 40.0%
AATCACTTGGTTAGGTAGGT+TGG + chr3_3:56222175-56222194 None:intergenic 40.0%
ACTAATGGAGCTCAATCACT+TGG + chr3_3:56222188-56222207 None:intergenic 40.0%
GAGAACCTGAGTTCAATTCT+TGG - chr3_3:56222240-56222259 Msa0459580:intron 40.0%
CCTAGTAATCTACGGTTATG+AGG + chr3_3:56222280-56222299 None:intergenic 40.0%
CCTCATAACCGTAGATTACT+AGG - chr3_3:56222277-56222296 Msa0459580:intron 40.0%
CTGTTCGAGTATCTTGACTT+CGG - chr3_3:56222757-56222776 Msa0459580:intron 40.0%
ACGACTTGTCCTAATAAGTG+GGG + chr3_3:56223122-56223141 None:intergenic 40.0%
CACGACTTGTCCTAATAAGT+GGG + chr3_3:56223123-56223142 None:intergenic 40.0%
!!! CTTTAGAACTTGGCCCATTT+TGG - chr3_3:56223358-56223377 Msa0459580:CDS 40.0%
! AGAGCTTTATGTATAGGGAG+AGG - chr3_3:56223412-56223431 Msa0459580:intron 40.0%
! GAGCTTTATGTATAGGGAGA+GGG - chr3_3:56223413-56223432 Msa0459580:intron 40.0%
! AGCTTTATGTATAGGGAGAG+GGG - chr3_3:56223414-56223433 Msa0459580:intron 40.0%
! AATTATTGCTGCTTGCTCGT+TGG - chr3_3:56223768-56223787 Msa0459580:intron 40.0%
TCTTTAGTTGCTCTTAGCCT+TGG - chr3_3:56223794-56223813 Msa0459580:intron 40.0%
ACTGCACTAACAGAATACCA+AGG + chr3_3:56223814-56223833 None:intergenic 40.0%
CATCGACCCAAAATAATGCA+AGG - chr3_3:56223977-56223996 Msa0459580:CDS 40.0%
TTATCGGAGCATGACTCATA+TGG + chr3_3:56224104-56224123 None:intergenic 40.0%
! ATGCTTTTAATCTCCCATGC+TGG + chr3_3:56224261-56224280 None:intergenic 40.0%
GCCGTCTTTGAATATGTGTT+TGG - chr3_3:56224299-56224318 Msa0459580:intron 40.0%
! GTATCTCCTCCTTTTCATCA+AGG - chr3_3:56224393-56224412 Msa0459580:intron 40.0%
CTTCCCAAACTGTTAAAGAC+CGG - chr3_3:56224435-56224454 Msa0459580:intron 40.0%
TTTCTCAACCACGTATTGCT+CGG - chr3_3:56224493-56224512 Msa0459580:intron 40.0%
! TACTTCCTAGATATTGGCCT+AGG - chr3_3:56224547-56224566 Msa0459580:intron 40.0%
GTAATCCTAGGCCAATATCT+AGG + chr3_3:56224555-56224574 None:intergenic 40.0%
ACTAAGCTCAGAGTTAACCT+TGG - chr3_3:56224976-56224995 Msa0459580:CDS 40.0%
! AGTAGTGCCATTGTTTGAGA+AGG - chr3_3:56225114-56225133 Msa0459580:CDS 40.0%
CTATAAACAAACCTCAGCAC+AGG + chr3_3:56225191-56225210 None:intergenic 40.0%
CCTTCAGAGTGTGTAATATG+AGG + chr3_3:56225376-56225395 None:intergenic 40.0%
CCTCATATTACACACTCTGA+AGG - chr3_3:56225373-56225392 Msa0459580:CDS 40.0%
TTTGGCCTAATAACAACAGC+AGG - chr3_3:56225452-56225471 Msa0459580:intron 40.0%
AATCCATGGCCTGTATACAA+GGG + chr3_3:56225501-56225520 None:intergenic 40.0%
AAATCCATGGCCTGTATACA+AGG + chr3_3:56225502-56225521 None:intergenic 40.0%
CTCTCAAGTAAGAACGAATG+AGG + chr3_3:56225704-56225723 None:intergenic 40.0%
CTCATTCGTTCTTACTTGAG+AGG - chr3_3:56225702-56225721 Msa0459580:intron 40.0%
ACATTTAGTCGGATAGATCC+TGG - chr3_3:56225784-56225803 Msa0459580:intron 40.0%
CATTTAGTCGGATAGATCCT+GGG - chr3_3:56225785-56225804 Msa0459580:intron 40.0%
ATTTAGTCGGATAGATCCTG+GGG - chr3_3:56225786-56225805 Msa0459580:intron 40.0%
AATTCCGTAGATACACAGGT+TGG - chr3_3:56225841-56225860 Msa0459580:intron 40.0%
CTTCTCATTTCCACCAGAAA+AGG + chr3_3:56226022-56226041 None:intergenic 40.0%
TGGAAATGAGAAGCTTCCAT+CGG - chr3_3:56226029-56226048 Msa0459580:intron 40.0%
GTAACCAAATGTGAAGGTTC+GGG + chr3_3:56226120-56226139 None:intergenic 40.0%
GAACCTTCACATTTGGTTAC+TGG - chr3_3:56226120-56226139 Msa0459580:intron 40.0%
! GGTTTGCTTAAAGCCGAAAA+TGG - chr3_3:56226150-56226169 Msa0459580:intron 40.0%
ATTCAGCTTCAGAGAAGAAG+AGG - chr3_3:56226208-56226227 Msa0459580:intron 40.0%
CTATGGAGTTGAGACTTACA+TGG - chr3_3:56226283-56226302 Msa0459580:intron 40.0%
! ATTTAGGAACCCCCAGTTTT+TGG - chr3_3:56226544-56226563 Msa0459580:CDS 40.0%
GTTCTCTTTCCAAAAACTGG+GGG + chr3_3:56226556-56226575 None:intergenic 40.0%
GATACAACTAACATGGATCC+AGG + chr3_3:56226935-56226954 None:intergenic 40.0%
! CGGCTTACTCAAACTGTTTT+CGG + chr3_3:56227097-56227116 None:intergenic 40.0%
!! GTTTGAGTAAGCCGTTTTCA+CGG - chr3_3:56227103-56227122 Msa0459580:intron 40.0%
CATAACATAATCACGTGGCT+CGG + chr3_3:56227142-56227161 None:intergenic 40.0%
GTATGTCAACTATTTCGTCC+AGG - chr3_3:56227275-56227294 Msa0459580:intron 40.0%
! TTTTCCGAACATGTCCACTT+GGG + chr3_3:56227373-56227392 None:intergenic 40.0%
! ATTTTCCGAACATGTCCACT+TGG + chr3_3:56227374-56227393 None:intergenic 40.0%
GACATGTTCGGAAAATGTCT+GGG - chr3_3:56227378-56227397 Msa0459580:intron 40.0%
! AAAATGTCTGGGATACAAGC+AGG - chr3_3:56227389-56227408 Msa0459580:intron 40.0%
TCACTATCCCATATGAAGAC+TGG + chr3_3:56227460-56227479 None:intergenic 40.0%
ATGCTGATGCTGACACAATT+CGG + chr3_3:56227681-56227700 None:intergenic 40.0%
CTTATTCTGTTTGTCCTCTC+TGG - chr3_3:56227711-56227730 Msa0459580:intron 40.0%
GAACACCAAATGTAACCAGA+AGG + chr3_3:56227764-56227783 None:intergenic 40.0%
TTCTCCTAAAACGGCTAAAC+TGG + chr3_3:56227866-56227885 None:intergenic 40.0%
!!! AATGTGTTCTTTTTTGGCGG+CGG + chr3_3:56228103-56228122 None:intergenic 40.0%
AAGAGAAGTTGCGAATCCTT+TGG - chr3_3:56228164-56228183 Msa0459580:CDS 40.0%
! AATCCTTTGGAAAACGAAGG+AGG - chr3_3:56228177-56228196 Msa0459580:CDS 40.0%
AACGAAGGAGGACTAAATAG+AGG - chr3_3:56228189-56228208 Msa0459580:CDS 40.0%
!! AATAGAGGTCAAGTTGAGGT+TGG - chr3_3:56228204-56228223 Msa0459580:CDS 40.0%
GGAAGGTCAACATTCTTCTT+TGG - chr3_3:56228377-56228396 Msa0459580:intron 40.0%
TCTTTGGCCACTCAATCTAA+TGG - chr3_3:56228393-56228412 Msa0459580:intron 40.0%
ATCCTCACCATTAGATTGAG+TGG + chr3_3:56228403-56228422 None:intergenic 40.0%
GGATGCAATGCATCTTTCAT+CGG + chr3_3:56228439-56228458 None:intergenic 40.0%
AGATGCATTGCATCCAATGT+TGG - chr3_3:56228444-56228463 Msa0459580:intron 40.0%
GATGCATTGCATCCAATGTT+GGG - chr3_3:56228445-56228464 Msa0459580:intron 40.0%
AGTGGGTATGGGATTTGATG+AGG + chr3_3:56220690-56220709 None:intergenic 45.0%
GAGAAAACGTGAAGTGGGTA+TGG + chr3_3:56220702-56220721 None:intergenic 45.0%
TCACCCACAAAAGGAAACCT+AGG + chr3_3:56220873-56220892 None:intergenic 45.0%
!! TGACTTGGTTCACCCACAAA+AGG + chr3_3:56220882-56220901 None:intergenic 45.0%
TTGTGGGTGAACCAAGTCAA+AGG - chr3_3:56220883-56220902 Msa0459580:CDS 45.0%
! GATGGGTTCTGACATTGGTA+TGG - chr3_3:56221098-56221117 Msa0459580:CDS 45.0%
CATGAATGGAAGAAAGGGTG+GGG - chr3_3:56221138-56221157 Msa0459580:CDS 45.0%
GCTCAACTTTGCTTCAAGTG+CGG - chr3_3:56221180-56221199 Msa0459580:CDS 45.0%
CTCAACTTTGCTTCAAGTGC+GGG - chr3_3:56221181-56221200 Msa0459580:CDS 45.0%
! CTTACCATTCCGGGATTTTC+TGG - chr3_3:56221357-56221376 Msa0459580:CDS 45.0%
ACAACCAGAAAATCCCGGAA+TGG + chr3_3:56221364-56221383 None:intergenic 45.0%
TGTGGAAGTAGGAGTAGGAA+TGG - chr3_3:56221547-56221566 Msa0459580:CDS 45.0%
GTGGAAGTAGGAGTAGGAAT+GGG - chr3_3:56221548-56221567 Msa0459580:CDS 45.0%
CTCCATAAATCTAGCATGGC+AGG + chr3_3:56221784-56221803 None:intergenic 45.0%
CTGCCATGCTAGATTTATGG+AGG - chr3_3:56221782-56221801 Msa0459580:CDS 45.0%
GCTCAATCACTTGGTTAGGT+AGG + chr3_3:56222179-56222198 None:intergenic 45.0%
TGGAGCTCAATCACTTGGTT+AGG + chr3_3:56222183-56222202 None:intergenic 45.0%
!! AAGGGTGCCCTAGTAATCTA+CGG + chr3_3:56222288-56222307 None:intergenic 45.0%
AGAGAAGGAAGATGTGAGCA+GGG + chr3_3:56222448-56222467 None:intergenic 45.0%
AAGAGAAGGAAGATGTGAGC+AGG + chr3_3:56222449-56222468 None:intergenic 45.0%
TCCATCGTCAACAAACTGGT+TGG - chr3_3:56222585-56222604 Msa0459580:intron 45.0%
TAGATACTACGCATCCACTG+TGG + chr3_3:56222732-56222751 None:intergenic 45.0%
TTCGAGTATCTTGACTTCGG+CGG - chr3_3:56222760-56222779 Msa0459580:intron 45.0%
TATCTTGACTTCGGCGGTAT+AGG - chr3_3:56222766-56222785 Msa0459580:CDS 45.0%
TGTATACGATATTGGCCACC+AGG - chr3_3:56222997-56223016 Msa0459580:CDS 45.0%
ATCACGAAGGATAATCCTGG+TGG + chr3_3:56223015-56223034 None:intergenic 45.0%
TTGTCCTAATAAGTGGGGTC+GGG + chr3_3:56223117-56223136 None:intergenic 45.0%
CTTGTCCTAATAAGTGGGGT+CGG + chr3_3:56223118-56223137 None:intergenic 45.0%
CCACGACTTGTCCTAATAAG+TGG + chr3_3:56223124-56223143 None:intergenic 45.0%
CCACTTATTAGGACAAGTCG+TGG - chr3_3:56223121-56223140 Msa0459580:CDS 45.0%
CTTATTAGGACAAGTCGTGG+TGG - chr3_3:56223124-56223143 Msa0459580:CDS 45.0%
! TGGCTTTTGAATGTATGGGC+TGG - chr3_3:56223210-56223229 Msa0459580:CDS 45.0%
! GGCTTTTGAATGTATGGGCT+GGG - chr3_3:56223211-56223230 Msa0459580:CDS 45.0%
!! GCTTTTGAATGTATGGGCTG+GGG - chr3_3:56223212-56223231 Msa0459580:CDS 45.0%
GCTTTATGTATAGGGAGAGG+GGG - chr3_3:56223415-56223434 Msa0459580:intron 45.0%
CTTTATGTATAGGGAGAGGG+GGG - chr3_3:56223416-56223435 Msa0459580:intron 45.0%
! TGGGTTGAGCTAAGGGTTAA+AGG - chr3_3:56223449-56223468 Msa0459580:intron 45.0%
GAGCTAAGGGTTAAAGGAGT+TGG - chr3_3:56223455-56223474 Msa0459580:intron 45.0%
CTAAGGGTTAAAGGAGTTGG+AGG - chr3_3:56223458-56223477 Msa0459580:intron 45.0%
!! CATTCCGCTCATTTTGACAG+CGG - chr3_3:56224006-56224025 Msa0459580:intron 45.0%
AAGAAGTTAGGCCGTCATTC+AGG - chr3_3:56224157-56224176 Msa0459580:intron 45.0%
AGAAGTTAGGCCGTCATTCA+GGG - chr3_3:56224158-56224177 Msa0459580:intron 45.0%
GCATGCATGAATCAAATGCG+AGG - chr3_3:56224277-56224296 Msa0459580:intron 45.0%
AACAACTCTTTCCCACCATC+TGG - chr3_3:56224336-56224355 Msa0459580:intron 45.0%
ACTACAGACGGAAGACTTGA+GGG - chr3_3:56224366-56224385 Msa0459580:intron 45.0%
! GGAAGTATAGGACGAGATCT+CGG + chr3_3:56224420-56224439 None:intergenic 45.0%
AGGCCGGTCTTTAACAGTTT+GGG + chr3_3:56224441-56224460 None:intergenic 45.0%
AAGGCCGGTCTTTAACAGTT+TGG + chr3_3:56224442-56224461 None:intergenic 45.0%
GGGCAAGATCAAGATACTCT+AGG - chr3_3:56224637-56224656 Msa0459580:intron 45.0%
CTCAAACAATGGCACTACTG+TGG + chr3_3:56225113-56225132 None:intergenic 45.0%
CTCAGCACCTTCTCAAACAA+TGG + chr3_3:56225124-56225143 None:intergenic 45.0%
! AAACCTCAGCACAGGCTTTT+GGG + chr3_3:56225183-56225202 None:intergenic 45.0%
! ACTCTGAAGGTCTTCCTTTG+CGG - chr3_3:56225386-56225405 Msa0459580:CDS 45.0%
CAACAGCAGGATGTACGTAT+TGG - chr3_3:56225465-56225484 Msa0459580:intron 45.0%
AGCAGGATGTACGTATTGGA+GGG - chr3_3:56225469-56225488 Msa0459580:intron 45.0%
ATCCATGGCCTGTATACAAG+GGG + chr3_3:56225500-56225519 None:intergenic 45.0%
ATCACCAGCACGTAAATCCA+TGG + chr3_3:56225515-56225534 None:intergenic 45.0%
! GATTTACGTGCTGGTGATAC+TGG - chr3_3:56225517-56225536 Msa0459580:intron 45.0%
TTTAGTCGGATAGATCCTGG+GGG - chr3_3:56225787-56225806 Msa0459580:intron 45.0%
!! TCCTGGGGGAAAACTTGTTA+TGG - chr3_3:56225801-56225820 Msa0459580:intron 45.0%
!! CCTGGGGGAAAACTTGTTAT+GGG - chr3_3:56225802-56225821 Msa0459580:intron 45.0%
GTGACCAACCTGTGTATCTA+CGG + chr3_3:56225848-56225867 None:intergenic 45.0%
ACATCTGCACATTCTAACGG+CGG - chr3_3:56225979-56225998 Msa0459580:intron 45.0%
GGAAATGAGAAGCTTCCATC+GGG - chr3_3:56226030-56226049 Msa0459580:intron 45.0%
TCGACACAATTACTTCCCGA+TGG + chr3_3:56226048-56226067 None:intergenic 45.0%
GATCTTCTCCGTTCACCAAA+TGG - chr3_3:56226066-56226085 Msa0459580:intron 45.0%
CTCCGTTCACCAAATGGTAA+CGG - chr3_3:56226072-56226091 Msa0459580:intron 45.0%
TCCGTTCACCAAATGGTAAC+GGG - chr3_3:56226073-56226092 Msa0459580:intron 45.0%
AACGGGGAACTTCGCTTAAA+TGG - chr3_3:56226090-56226109 Msa0459580:intron 45.0%
ACATCCCGAACCTTCACATT+TGG - chr3_3:56226113-56226132 Msa0459580:intron 45.0%
GCTCCAGTAACCAAATGTGA+AGG + chr3_3:56226126-56226145 None:intergenic 45.0%
!! GCAAGTCATCTCGCCATTTT+CGG + chr3_3:56226166-56226185 None:intergenic 45.0%
! ACAATGCTTGGCTTGACACT+GGG + chr3_3:56226339-56226358 None:intergenic 45.0%
TCCTCGATTGTGACAATGCT+TGG + chr3_3:56226351-56226370 None:intergenic 45.0%
AACTATTTCGTCCAGGGTGA+AGG - chr3_3:56227282-56227301 Msa0459580:intron 45.0%
GGACATGTTCGGAAAATGTC+TGG - chr3_3:56227377-56227396 Msa0459580:intron 45.0%
CACACAATACAAGAACAGCC+GGG + chr3_3:56227949-56227968 None:intergenic 45.0%
GCACACAATACAAGAACAGC+CGG + chr3_3:56227950-56227969 None:intergenic 45.0%
CACACGTTGCAAGTACATGT+TGG + chr3_3:56228006-56228025 None:intergenic 45.0%
GTTGACGAGTCAGATACCAA+TGG - chr3_3:56228132-56228151 Msa0459580:intron 45.0%
TTCTCTTGATGCTCCACCAT+TGG + chr3_3:56228151-56228170 None:intergenic 45.0%
! GCGAATCCTTTGGAAAACGA+AGG - chr3_3:56228174-56228193 Msa0459580:CDS 45.0%
! AGTCCTCCTTCGTTTTCCAA+AGG + chr3_3:56228183-56228202 None:intergenic 45.0%
AAGATCTATCTTTCCAGCGC+TGG + chr3_3:56228235-56228254 None:intergenic 45.0%
!!! TTTTTATTATATATATCAAT+AGG + chr3_3:56223557-56223576 None:intergenic 5.0%
!! TAATAAACAAAATAAAAATA+TGG + chr3_3:56226428-56226447 None:intergenic 5.0%
AAAGGGTGGGGTTTACGATC+TGG - chr3_3:56221150-56221169 Msa0459580:CDS 50.0%
TGAACTCAGGTTCTCGCGAA+CGG + chr3_3:56222235-56222254 None:intergenic 50.0%
GTACACATTACAGGGCAGTG+TGG + chr3_3:56222347-56222366 None:intergenic 50.0%
GAGAAGGAAGATGTGAGCAG+GGG + chr3_3:56222447-56222466 None:intergenic 50.0%
!! GCCAACCAGTTTGTTGACGA+TGG + chr3_3:56222589-56222608 None:intergenic 50.0%
ACTACGCATCCACTGTGGAT+AGG + chr3_3:56222727-56222746 None:intergenic 50.0%
TGTACCCGACCCCACTTATT+AGG - chr3_3:56223110-56223129 Msa0459580:CDS 50.0%
! AGCTCAACTGGGTTGAGCTA+AGG - chr3_3:56223441-56223460 Msa0459580:intron 50.0%
! GCTCAACTGGGTTGAGCTAA+GGG - chr3_3:56223442-56223461 Msa0459580:intron 50.0%
GTTAAAGGAGTTGGAGGTCC+TGG - chr3_3:56223464-56223483 Msa0459580:intron 50.0%
GTTATGTTCGGGCTTGAACC+AGG + chr3_3:56223485-56223504 None:intergenic 50.0%
GTCGATGAAACGGGCCATTT+AGG + chr3_3:56223964-56223983 None:intergenic 50.0%
CAGTCCGCTGTCAAAATGAG+CGG + chr3_3:56224013-56224032 None:intergenic 50.0%
TTAGGCCGTCATTCAGGGAA+GGG - chr3_3:56224163-56224182 Msa0459580:intron 50.0%
GTATCCCCTTCCCTGAATGA+CGG + chr3_3:56224171-56224190 None:intergenic 50.0%
TCATTCAGGGAAGGGGATAC+TGG - chr3_3:56224171-56224190 Msa0459580:CDS 50.0%
ATGTGTTTGGGAAACCCGTC+AGG - chr3_3:56224312-56224331 Msa0459580:intron 50.0%
TGTGTTTGGGAAACCCGTCA+GGG - chr3_3:56224313-56224332 Msa0459580:intron 50.0%
GGAAAGAGTTGTTCCCTGAC+GGG + chr3_3:56224329-56224348 None:intergenic 50.0%
GGGAAAGAGTTGTTCCCTGA+CGG + chr3_3:56224330-56224349 None:intergenic 50.0%
AACTCTTTCCCACCATCTGG+TGG - chr3_3:56224339-56224358 Msa0459580:intron 50.0%
TAGTCTCTCCACCAGATGGT+GGG + chr3_3:56224350-56224369 None:intergenic 50.0%
TCTGTAGTCTCTCCACCAGA+TGG + chr3_3:56224354-56224373 None:intergenic 50.0%
TCTGGTGGAGAGACTACAGA+CGG - chr3_3:56224354-56224373 Msa0459580:intron 50.0%
GACTACAGACGGAAGACTTG+AGG - chr3_3:56224365-56224384 Msa0459580:intron 50.0%
GATCTCGGCCCTTGATGAAA+AGG + chr3_3:56224405-56224424 None:intergenic 50.0%
GCAGGGATCAAGTTACTCCA+AGG + chr3_3:56224996-56225015 None:intergenic 50.0%
! CAAACCTCAGCACAGGCTTT+TGG + chr3_3:56225184-56225203 None:intergenic 50.0%
! CTCTGAAGGTCTTCCTTTGC+GGG - chr3_3:56225387-56225406 Msa0459580:CDS 50.0%
TTCACATCTTGGACCCGCAA+AGG + chr3_3:56225403-56225422 None:intergenic 50.0%
TTTGCGGGTCCAAGATGTGA+AGG - chr3_3:56225402-56225421 Msa0459580:intron 50.0%
TTGCGGGTCCAAGATGTGAA+GGG - chr3_3:56225403-56225422 Msa0459580:intron 50.0%
CAGCAGGATGTACGTATTGG+AGG - chr3_3:56225468-56225487 Msa0459580:intron 50.0%
! CCCATAACAAGTTTTCCCCC+AGG + chr3_3:56225805-56225824 None:intergenic 50.0%
TTCTAACGGCGGTTCTGCAA+AGG - chr3_3:56225990-56226009 Msa0459580:intron 50.0%
TCTAACGGCGGTTCTGCAAA+GGG - chr3_3:56225991-56226010 Msa0459580:intron 50.0%
! GCAAAGGGAGACACCTTTTC+TGG - chr3_3:56226006-56226025 Msa0459580:intron 50.0%
! AAGGGAGACACCTTTTCTGG+TGG - chr3_3:56226009-56226028 Msa0459580:intron 50.0%
! CCCCGTTACCATTTGGTGAA+CGG + chr3_3:56226077-56226096 None:intergenic 50.0%
! CCGTTCACCAAATGGTAACG+GGG - chr3_3:56226074-56226093 Msa0459580:intron 50.0%
CGAAGTTCCCCGTTACCATT+TGG + chr3_3:56226084-56226103 None:intergenic 50.0%
CATTTGGTTACTGGAGCTGC+TGG - chr3_3:56226129-56226148 Msa0459580:intron 50.0%
! GACAATGCTTGGCTTGACAC+TGG + chr3_3:56226340-56226359 None:intergenic 50.0%
! GCCAAGCATTGTCACAATCG+AGG - chr3_3:56226347-56226366 Msa0459580:intron 50.0%
ATCTTCAGCGCCTCTTCATC+TGG - chr3_3:56226577-56226596 Msa0459580:CDS 50.0%
TCTTCAGCGCCTCTTCATCT+GGG - chr3_3:56226578-56226597 Msa0459580:CDS 50.0%
GGACTCTTACCCAGATGAAG+AGG + chr3_3:56226590-56226609 None:intergenic 50.0%
!! GGAGGAAGAAGAGCATCAAC+CGG + chr3_3:56227352-56227371 None:intergenic 50.0%
ATGCTCTTCTTCCTCCCAAG+TGG - chr3_3:56227356-56227375 Msa0459580:intron 50.0%
TCCTCCCAAGTGGACATGTT+CGG - chr3_3:56227366-56227385 Msa0459580:intron 50.0%
CAGATCTTCATGTTCCGCAC+CGG - chr3_3:56227516-56227535 Msa0459580:intron 50.0%
ATCCAAGAACACGAGCCTTC+TGG - chr3_3:56227826-56227845 Msa0459580:intron 50.0%
!! CTCGCCAGTTTAGCCGTTTT+AGG - chr3_3:56227859-56227878 Msa0459580:intron 50.0%
! GTGTCTAGGATGTTTCGTGG+TGG + chr3_3:56227923-56227942 None:intergenic 50.0%
! ACGGTGTCTAGGATGTTTCG+TGG + chr3_3:56227926-56227945 None:intergenic 50.0%
AAACATCCTAGACACCGTCC+CGG - chr3_3:56227928-56227947 Msa0459580:intron 50.0%
CAATACAAGAACAGCCGGGA+CGG + chr3_3:56227945-56227964 None:intergenic 50.0%
ATTCAGCCACCAAGCGGAAA+AGG - chr3_3:56227970-56227989 Msa0459580:intron 50.0%
TTCAGCCACCAAGCGGAAAA+GGG - chr3_3:56227971-56227990 Msa0459580:intron 50.0%
! TTGTGTCTCCCTTTTCCGCT+TGG + chr3_3:56227982-56228001 None:intergenic 50.0%
!! CGTTTTGAACCGACGCTTCA+CGG + chr3_3:56228034-56228053 None:intergenic 50.0%
GACGAGTCAGATACCAATGG+TGG - chr3_3:56228135-56228154 Msa0459580:intron 50.0%
ACTTGCGAGTCATCGCGATT+GGG + chr3_3:56228267-56228286 None:intergenic 50.0%
GGCCACTCAATCTAATGGTG+AGG - chr3_3:56228398-56228417 Msa0459580:intron 50.0%
GAACTCAGGTTCTCGCGAAC+GGG + chr3_3:56222234-56222253 None:intergenic 55.0%
GGCACCCTTCCTCTACGAAT+CGG - chr3_3:56222299-56222318 Msa0459580:intron 55.0%
ACCCTTCCTCTACGAATCGG+AGG - chr3_3:56222302-56222321 Msa0459580:intron 55.0%
! CCCTCCGATTCGTAGAGGAA+GGG + chr3_3:56222306-56222325 None:intergenic 55.0%
CCCTTCCTCTACGAATCGGA+GGG - chr3_3:56222303-56222322 Msa0459580:intron 55.0%
! ACCCTCCGATTCGTAGAGGA+AGG + chr3_3:56222307-56222326 None:intergenic 55.0%
! GCTAACCCTCCGATTCGTAG+AGG + chr3_3:56222311-56222330 None:intergenic 55.0%
GTTCTGCAGCCTATCCACAG+TGG - chr3_3:56222715-56222734 Msa0459580:intron 55.0%
AGAGGGGGGATAGCTCAACT+GGG - chr3_3:56223430-56223449 Msa0459580:intron 55.0%
GTTAGGCCGTCATTCAGGGA+AGG - chr3_3:56224162-56224181 Msa0459580:intron 55.0%
TAGGCCGTCATTCAGGGAAG+GGG - chr3_3:56224164-56224183 Msa0459580:intron 55.0%
GTAGTCTCTCCACCAGATGG+TGG + chr3_3:56224351-56224370 None:intergenic 55.0%
CTCGGCCCTTGATGAAAAGG+AGG + chr3_3:56224402-56224421 None:intergenic 55.0%
TTCTTACCCCTCCCATCACC+AGG + chr3_3:56224522-56224541 None:intergenic 55.0%
TTGGCCTAGGATTACGGACC+AGG - chr3_3:56224560-56224579 Msa0459580:intron 55.0%
AGCTCCTGGTCCGTAATCCT+AGG + chr3_3:56224567-56224586 None:intergenic 55.0%
TAGGATTACGGACCAGGAGC+TGG - chr3_3:56224566-56224585 Msa0459580:intron 55.0%
TGAGTGCCAGTGATGCAGGT+CGG - chr3_3:56225140-56225159 Msa0459580:CDS 55.0%
ACCAATCCGACCTGCATCAC+TGG + chr3_3:56225149-56225168 None:intergenic 55.0%
TCTCCCAAAAGCCTGTGCTG+AGG - chr3_3:56225177-56225196 Msa0459580:CDS 55.0%
GGGTGTGACCCCTTGTATAC+AGG - chr3_3:56225489-56225508 Msa0459580:intron 55.0%
GACCCCTTGTATACAGGCCA+TGG - chr3_3:56225495-56225514 Msa0459580:intron 55.0%
CAGGCCATGGATTTACGTGC+TGG - chr3_3:56225508-56225527 Msa0459580:intron 55.0%
! ATGCTTGGCTTGACACTGGG+CGG + chr3_3:56226336-56226355 None:intergenic 55.0%
GTCCAGGGTGAAGGAACAGT+GGG - chr3_3:56227291-56227310 Msa0459580:intron 55.0%
TCCGAACATGTCCACTTGGG+AGG + chr3_3:56227370-56227389 None:intergenic 55.0%
CGAGCTGAGCTCAAGGGAAT+TGG - chr3_3:56227540-56227559 Msa0459580:intron 55.0%
AGCCAGAAGGCTCGTGTTCT+TGG + chr3_3:56227831-56227850 None:intergenic 55.0%
GTGTGCATTCAGCCACCAAG+CGG - chr3_3:56227964-56227983 Msa0459580:intron 55.0%
! TGTCTCCCTTTTCCGCTTGG+TGG + chr3_3:56227979-56227998 None:intergenic 55.0%
TGTGTACGACCGTGAAGCGT+CGG - chr3_3:56228022-56228041 Msa0459580:intron 55.0%
CACTTGCGAGTCATCGCGAT+TGG + chr3_3:56228268-56228287 None:intergenic 55.0%
CAATCGCGATGACTCGCAAG+TGG - chr3_3:56228266-56228285 Msa0459580:five_prime_UTR 55.0%
! CGGTTCTTGGACCGCCATTT+TGG + chr3_3:56228341-56228360 None:intergenic 55.0%
GGGTGGGGTTTACGATCTGG+TGG - chr3_3:56221153-56221172 Msa0459580:CDS 60.0%
! CTCGCGAACGGGTCGACTTT+AGG + chr3_3:56222223-56222242 None:intergenic 60.0%
GAGAGGGGGGATAGCTCAAC+TGG - chr3_3:56223429-56223448 Msa0459580:intron 60.0%
ATTGCTCGGCCTCCTGGTGA+TGG - chr3_3:56224507-56224526 Msa0459580:intron 60.0%
TTGCTCGGCCTCCTGGTGAT+GGG - chr3_3:56224508-56224527 Msa0459580:intron 60.0%
TTACCCCTCCCATCACCAGG+AGG + chr3_3:56224519-56224538 None:intergenic 60.0%
CAGACAAACGCTCCAGCTCC+TGG + chr3_3:56224581-56224600 None:intergenic 60.0%
! CAGGAGCTGGAGCGTTTGTC+TGG - chr3_3:56224579-56224598 Msa0459580:intron 60.0%
GTGCTGAGTGCCAGTGATGC+AGG - chr3_3:56225136-56225155 Msa0459580:CDS 60.0%
GCCAGTGATGCAGGTCGGAT+TGG - chr3_3:56225145-56225164 Msa0459580:CDS 60.0%
CGTCCAGGGTGAAGGAACAG+TGG - chr3_3:56227290-56227309 Msa0459580:intron 60.0%
AGCCCACTGTTCCTTCACCC+TGG + chr3_3:56227296-56227315 None:intergenic 60.0%
ACCGGACGAGCTGAGCTCAA+GGG - chr3_3:56227534-56227553 Msa0459580:intron 60.0%
TCCCTTGAGCTCAGCTCGTC+CGG + chr3_3:56227538-56227557 None:intergenic 60.0%
!! GCGAGAGCGTCTAAGCCAGA+AGG + chr3_3:56227844-56227863 None:intergenic 60.0%
CTCCAGCTGCGGAATCAGCA+GGG + chr3_3:56227900-56227919 None:intergenic 60.0%
TTTCGTGGTGGCTCCAGCTG+CGG + chr3_3:56227911-56227930 None:intergenic 60.0%
CCAGGAGGCCGAGCAATACG+TGG + chr3_3:56224504-56224523 None:intergenic 65.0%
CCACGTATTGCTCGGCCTCC+TGG - chr3_3:56224501-56224520 Msa0459580:intron 65.0%
!! TCGGCCTCCTGGTGATGGGA+GGG - chr3_3:56224512-56224531 Msa0459580:intron 65.0%
! CTTGGCTTGACACTGGGCGG+TGG + chr3_3:56226333-56226352 None:intergenic 65.0%
TGAGCTCAGCTCGTCCGGTG+CGG + chr3_3:56227533-56227552 None:intergenic 65.0%
CACCGGACGAGCTGAGCTCA+AGG - chr3_3:56227533-56227552 Msa0459580:intron 65.0%
GCTCCAGCTGCGGAATCAGC+AGG + chr3_3:56227901-56227920 None:intergenic 65.0%
GAACAGCCGGGACGGTGTCT+AGG + chr3_3:56227937-56227956 None:intergenic 65.0%
!! CTCGGCCTCCTGGTGATGGG+AGG - chr3_3:56224511-56224530 Msa0459580:intron 70.0%
!! CGGCCTCCTGGTGATGGGAG+GGG - chr3_3:56224513-56224532 Msa0459580:intron 70.0%
!! GGCCCTGCTGATTCCGCAGC+TGG - chr3_3:56227895-56227914 Msa0459580:intron 70.0%
GAGGTTGGCGAGTCCAGCGC+TGG - chr3_3:56228219-56228238 Msa0459580:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 56220574 56228789 56220574 ID=Msa0459580;Name=Msa0459580
chr3_3 mRNA 56220574 56228789 56220574 ID=Msa0459580-mRNA-1;Parent=Msa0459580;Name=Msa0459580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=185|0.91|1|1|0.91|0.84|13|259|898
chr3_3 exon 56220574 56221575 56220574 ID=Msa0459580-mRNA-1:exon:11216;Parent=Msa0459580-mRNA-1
chr3_3 exon 56221777 56221844 56221777 ID=Msa0459580-mRNA-1:exon:11215;Parent=Msa0459580-mRNA-1
chr3_3 exon 56221953 56222066 56221953 ID=Msa0459580-mRNA-1:exon:11214;Parent=Msa0459580-mRNA-1
chr3_3 exon 56222764 56222813 56222764 ID=Msa0459580-mRNA-1:exon:11213;Parent=Msa0459580-mRNA-1
chr3_3 exon 56222971 56223393 56222971 ID=Msa0459580-mRNA-1:exon:11212;Parent=Msa0459580-mRNA-1
chr3_3 exon 56223505 56223581 56223505 ID=Msa0459580-mRNA-1:exon:11211;Parent=Msa0459580-mRNA-1
chr3_3 exon 56223825 56223999 56223825 ID=Msa0459580-mRNA-1:exon:11210;Parent=Msa0459580-mRNA-1
chr3_3 exon 56224165 56224261 56224165 ID=Msa0459580-mRNA-1:exon:11209;Parent=Msa0459580-mRNA-1
chr3_3 exon 56224759 56225420 56224759 ID=Msa0459580-mRNA-1:exon:11208;Parent=Msa0459580-mRNA-1
chr3_3 exon 56226538 56226639 56226538 ID=Msa0459580-mRNA-1:exon:11207;Parent=Msa0459580-mRNA-1
chr3_3 exon 56226732 56226813 56226732 ID=Msa0459580-mRNA-1:exon:11206;Parent=Msa0459580-mRNA-1
chr3_3 exon 56228161 56228286 56228161 ID=Msa0459580-mRNA-1:exon:11205;Parent=Msa0459580-mRNA-1
chr3_3 exon 56228627 56228789 56228627 ID=Msa0459580-mRNA-1:exon:11204;Parent=Msa0459580-mRNA-1
chr3_3 five_prime_UTR 56228627 56228789 56228627 ID=Msa0459580-mRNA-1:five_prime_utr;Parent=Msa0459580-mRNA-1
chr3_3 five_prime_UTR 56228265 56228286 56228265 ID=Msa0459580-mRNA-1:five_prime_utr;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56228161 56228264 56228161 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56226732 56226813 56226732 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56226538 56226639 56226538 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56224759 56225420 56224759 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56224165 56224261 56224165 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56223825 56223999 56223825 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56223505 56223581 56223505 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56222971 56223393 56222971 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56222764 56222813 56222764 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56221953 56222066 56221953 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56221777 56221844 56221777 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 CDS 56220833 56221575 56220833 ID=Msa0459580-mRNA-1:cds;Parent=Msa0459580-mRNA-1
chr3_3 three_prime_UTR 56220574 56220832 56220574 ID=Msa0459580-mRNA-1:three_prime_utr;Parent=Msa0459580-mRNA-1
Gene Sequence

>Msa0459580

ATGGGTTCTGACATTGGTATGGTGAATGGTTCGTGTGTTCATGAATGGAAGAAAGGGTGGGGTTTACGATCTGGTGGATTTGCTCAACTTTGCTTCAAGTGCGGATCTCCCTTTGAGAGTTCAGTTTTTTGTAATAAATTCCATCGTCAACAAACTGGTTGGCGAGAGTGTAACATTTGCAACAAGCCTATCCACAGTGGATGCGTAGTATCTAAATCTCTGTTCGAGTATCTTGACTTCGGCGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCAACTAAATATGATTCGTAATACTGAAAATCCTAAATGGCCCGTTTCATCGACCCAAAATAATGCAAGGGATATTCATTCCGCTCATTTTGACAGCGGACTGTTTATGAGTAATGTTGATGAAGGAAAGCTTATGCAATTATGCAGAGTTGTTGAAGCTAGTGAATCTATCCATATGAGTCATGCTCCGATAAACAACATGATTACATCTAATGGGAAAAACAATCAAGAAGTTAGGCCGTCATTCAGGGAAGGGGATACTGGATTTTCAAATGTGATTAAACCGCCTGTTCAGTCATTAACTTTTGCCACGTTAGAAAATAATAGACCAGCATGGGAGATTAAAAGCATGCATGAATCAAATGCGAGGCCGTCTTTGAATATGTGTTTGGGAAACCCGTCAGGGAACAACTCTTTCCCACCATCTGGTGGAGAGACTACAGACGGAAGACTTGAGGGAAAAGTATCTCCTCCTTTTCATCAAGGGCCGAGATCTCGTCCTATACTTCCCAAACTGTTAAAGACCGGCCTTACCATGAATATAGAAACTGAAAAAGGGACACTTTCTCAACCACGTATTGCTCGGCCTCCTGGTGATGGGAGGGGTAAGAATCAGTTACTTCCTAGATATTGGCCTAGGATTACGGACCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAGTCCACAGTAGTGCCATTGTTTGAGAAGGTGCTGAGTGCCAGTGATGCAGGTCGGATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCATATTTTCCTCATATTACACACTCTGAAGGTCTTCCTTTGCGGGTCCAAGATGTGAAGGGTAATGAATGGACTTTTCAATTCAGATTTTGGCCTAATAACAACAGCAGGATGTACGTATTGGAGGGTGTGACCCCTTGTATACAGGCCATGGATTTACGTGCTGGTGATACTGTTACATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATGGGTTTCAGAAAGTCATCAAATTCCGTAGATACACAGGATGCTTCTACATCTGCACATTCTAACGGCGGTTCTGCAAAGGGAGACACCTTTTCTGGTGGAAATGAGAAGCTTCCATCGGGAAGTAATTGTGTCGATCTTCTCCGTTCACCAAATGGTAACGGGGAACTTCGCTTAAATGGACATCCCGAACCTTCACATTTGGTTACTGGAGCTGCTGGTTTGCTTAAAGCCGAAAATGGCGAGATGACTTGCAATAATTCACCTGACCAAAAAAATTCAGCTTCAGAGAAGAAGAGGACTCGAAATATTGGCCTTAAAAGTAAGAGGTTGCTTATTGGTAATGATGATTCTATGGAGTTGAGACTTACATGGGAAGAAGCACAAGACTTGCTTCGTCCACCGCCCAGTGTCAAGCCAAGCATTGTCACAATCGAGGATCAAGTATTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACAATCTTCAGCGCCTCTTCATCTGGGGTGAAGGAACAGTGGGCTCAATGTGATGATTGCTCTAAATGGAGAAAGTTACCGGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCGGAAAATGTCTGGGATACAAGCAGATCTTCATGTTCCGCACCGGACGAGCTGAGCTCAAGGGAATTGGAAAATCTTTTGAAATCTAGCAAAGATTTTAAGAAGCGACGGATTGTAGAAAACAGCAAGTTGATCCAAGAACACGAGCCTTCTGGCTTAGACGCTCTCGCCAGTTTAGCCGTTTTAGGAGAAAATCTCTTGGGCCCTGCTGATTCCGCAGCTGGAGCCACCACGAAACATCCTAGACACCGTCCCGGCTGTTCTTGTATTGTGTGCATTCAGCCACCAAGCGGAAAAGGGAGACACAAGCCAACATGTACTTGCAACGTGTGTACGACCGTGAAGCGTCGGTTCAAAACGCTTATGCTACGCAAGAAGAAACGACAATCAGAGCGTGAAGCAGATGCCGCCGCCAAAAAAGAACACATTCACAACAGAGTTGACGAGTCAGATACCAATGGTGGAGCATCAAGAGAAGTTGCGAATCCTTTGGAAAACGAAGGAGGACTAAATAGAGGTCAAGTTGAGGTTGGCGAGTCCAGCGCTGGAAAGATAGATCTTAATTGTCATCCCAATCGCGATGACTCGCAAGTGGATAATGTAGCAAAACTTAGTGATCATATATGGGAACATATTAATATGAACCAAAATGGCGGTCCAAGAACCGTTAATACTGAAATGCAGGAAGGTCAACATTCTTCTTTGGCCACTCAATCTAATGGTGAGGATACGAGACACTTGTCCGATGAAAGATGCATTGCATCCAATGTTGGGAACAAAGAAAGAAGAGATGAGGTATTAAATCATTCAAATGAAAGTGAAAAGAATCTGTCTTGA
Protein sequence

>Msa0459580

MGSDIGMVNGSCVHEWKKGWGLRSGGFAQLCFKCGSPFESSVFCNKFHRQQTGWRECNICNKPIHSGCVVSKSLFEYLDFGGIGCVSCVNTSQLNMIRNTENPKWPVSSTQNNARDIHSAHFDSGLFMSNVDEGKLMQLCRVVEASESIHMSHAPINNMITSNGKNNQEVRPSFREGDTGFSNVIKPPVQSLTFATLENNRPAWEIKSMHESNARPSLNMCLGNPSGNNSFPPSGGETTDGRLEGKVSPPFHQGPRSRPILPKLLKTGLTMNIETEKGTLSQPRIARPPGDGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHITHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMDLRAGDTVTFSRIDPGGKLVMGFRKSSNSVDTQDASTSAHSNGGSAKGDTFSGGNEKLPSGSNCVDLLRSPNGNGELRLNGHPEPSHLVTGAAGLLKAENGEMTCNNSPDQKNSASEKKRTRNIGLKSKRLLIGNDDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGVKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCSAPDELSSRELENLLKSSKDFKKRRIVENSKLIQEHEPSGLDALASLAVLGENLLGPADSAAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKKEHIHNRVDESDTNGGASREVANPLENEGGLNRGQVEVGESSAGKIDLNCHPNRDDSQVDNVAKLSDHIWEHINMNQNGGPRTVNTEMQEGQHSSLATQSNGEDTRHLSDERCIASNVGNKERRDEVLNHSNESEKNLS*