Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415650 | AFK38440.1 | 94.220 | 173 | 10 | 0 | 1 | 173 | 1 | 173 | 9.53e-120 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415650 | sp|Q5XVC4|MDP60_ARATH | 47.273 | 110 | 56 | 1 | 52 | 159 | 365 | 474 | 6.00e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415650 | I3SDU8 | 94.220 | 173 | 10 | 0 | 1 | 173 | 1 | 173 | 4.55e-120 | 345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0415650 | Msa0460480 | 0.818830 | 1.597339e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415650 | MtrunA17_Chr3g0109961 | 95.376 | 173 | 8 | 0 | 1 | 173 | 1 | 173 | 2.71e-117 | 329 |
| Msa0415650 | MtrunA17_Chr4g0051971 | 86.614 | 127 | 17 | 0 | 46 | 172 | 6 | 132 | 4.72e-82 | 238 |
| Msa0415650 | MtrunA17_Chr6g0454541 | 47.863 | 117 | 59 | 1 | 49 | 163 | 366 | 482 | 1.17e-27 | 107 |
| Msa0415650 | MtrunA17_Chr7g0218721 | 53.012 | 83 | 39 | 0 | 49 | 131 | 337 | 419 | 3.50e-22 | 92.0 |
| Msa0415650 | MtrunA17_Chr4g0040361 | 41.250 | 80 | 45 | 2 | 56 | 134 | 640 | 718 | 3.39e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0415650 | AT5G37478.1 | 56.098 | 164 | 64 | 3 | 6 | 161 | 9 | 172 | 1.54e-55 | 173 |
| Msa0415650 | AT5G37478.2 | 59.712 | 139 | 48 | 3 | 31 | 161 | 1 | 139 | 4.51e-51 | 160 |
| Msa0415650 | AT5G37478.4 | 51.899 | 158 | 60 | 2 | 6 | 161 | 9 | 152 | 1.83e-48 | 154 |
| Msa0415650 | AT3G01015.1 | 47.273 | 110 | 56 | 1 | 52 | 159 | 365 | 474 | 6.10e-25 | 100 |
| Msa0415650 | AT5G15510.1 | 48.515 | 101 | 50 | 1 | 53 | 151 | 376 | 476 | 5.62e-24 | 97.8 |
| Msa0415650 | AT5G15510.4 | 52.564 | 78 | 37 | 0 | 53 | 130 | 376 | 453 | 6.08e-21 | 89.0 |
| Msa0415650 | AT5G15510.3 | 52.564 | 78 | 37 | 0 | 53 | 130 | 376 | 453 | 6.08e-21 | 89.0 |
| Msa0415650 | AT5G15510.2 | 51.807 | 83 | 39 | 1 | 53 | 134 | 376 | 458 | 6.53e-21 | 89.0 |
| Msa0415650 | AT5G37478.3 | 54.878 | 82 | 31 | 2 | 6 | 81 | 9 | 90 | 1.41e-17 | 75.1 |
| Msa0415650 | AT1G03780.3 | 45.570 | 79 | 41 | 2 | 56 | 133 | 642 | 719 | 1.10e-12 | 65.5 |
| Msa0415650 | AT1G03780.2 | 45.570 | 79 | 41 | 2 | 56 | 133 | 642 | 719 | 1.18e-12 | 65.5 |
Find 36 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAGCTTCTTCTATTTAA+TGG | 0.182331 | 3_2:+61980910 | None:intergenic |
| TAAAGCTTCTTCTATTTAAT+GGG | 0.260975 | 3_2:+61980911 | None:intergenic |
| TCCTTTGTTATTTACCTTTG+TGG | 0.298093 | 3_2:+61981684 | None:intergenic |
| TAGAATGGCTTATCAAAATA+AGG | 0.325849 | 3_2:+61981708 | None:intergenic |
| CCTTTGTTATTTACCTTTGT+GGG | 0.335145 | 3_2:+61981685 | None:intergenic |
| AAGTGCTGGAGCTGCACCTC+TGG | 0.428196 | 3_2:-61980983 | Msa0415650:CDS |
| ATTTACCTTTGTGGGTAGAA+TGG | 0.428333 | 3_2:+61981693 | None:intergenic |
| TTGCTCTCTCCATGTTTAAG+TGG | 0.437896 | 3_2:+61983743 | None:intergenic |
| CCGTTTGCTAAGGAAGGAAA+TGG | 0.439693 | 3_2:-61981751 | Msa0415650:CDS |
| CCATTTCCTTCCTTAGCAAA+CGG | 0.467636 | 3_2:+61981751 | None:intergenic |
| CCGTCTAATTAAGCGGAGCT+AGG | 0.479197 | 3_2:+61980772 | None:intergenic |
| CTTCACAATCTTCATCTCAA+TGG | 0.487090 | 3_2:-61983470 | Msa0415650:CDS |
| CAAAAGATGTACTCAAAGAA+AGG | 0.509955 | 3_2:-61982225 | Msa0415650:CDS |
| TGGAGCTGCACCTCTGGCAA+TGG | 0.510035 | 3_2:-61980977 | Msa0415650:CDS |
| GACAACAAAATTATATCTCA+TGG | 0.511192 | 3_2:-61981918 | Msa0415650:CDS |
| ACAAGAGGAGAAGTTGATGA+AGG | 0.523831 | 3_2:-61981882 | Msa0415650:intron |
| ATGTGAATGCATGATTCTCT+TGG | 0.533305 | 3_2:+61981016 | None:intergenic |
| ACATGATGAGTAGCAAGTGC+TGG | 0.534456 | 3_2:-61980997 | Msa0415650:CDS |
| GTATGAAGTTTGAATTCTTG+TGG | 0.536536 | 3_2:+61982058 | None:intergenic |
| AAGGTATTATGACAAGACTA+AGG | 0.541632 | 3_2:-61982206 | Msa0415650:intron |
| TGGAGTAGTACTGATTCTAA+AGG | 0.544697 | 3_2:-61983450 | Msa0415650:CDS |
| AATTAAGCGGAGCTAGGCTA+TGG | 0.551877 | 3_2:+61980778 | None:intergenic |
| AGGAAGAAATCCGTTTGCTA+AGG | 0.565674 | 3_2:-61981761 | Msa0415650:CDS |
| CCTAGCTCCGCTTAATTAGA+CGG | 0.565957 | 3_2:-61980772 | Msa0415650:three_prime_UTR |
| AGAAATCCGTTTGCTAAGGA+AGG | 0.569795 | 3_2:-61981757 | Msa0415650:CDS |
| TAAGGCATCAATTGAGCTCG+TGG | 0.570757 | 3_2:+61981726 | None:intergenic |
| TAGTACTGATTCTAAAGGAA+TGG | 0.572965 | 3_2:-61983445 | Msa0415650:intron |
| ACATTAATTCCACTTAAACA+TGG | 0.573030 | 3_2:-61983752 | Msa0415650:exon |
| AAAGCTTCTTCTATTTAATG+GGG | 0.585934 | 3_2:+61980912 | None:intergenic |
| AATCTCGCCGTCTAATTAAG+CGG | 0.613760 | 3_2:+61980765 | None:intergenic |
| TATGGAACAGATGATTGAAG+AGG | 0.620275 | 3_2:-61981781 | Msa0415650:intron |
| ACATGCATGAAATTAATACA+AGG | 0.623947 | 3_2:+61980846 | None:intergenic |
| GGAGTTGAGAAAGAGACAAG+AGG | 0.644836 | 3_2:-61981897 | Msa0415650:CDS |
| ATAAGCCATTCTACCCACAA+AGG | 0.650899 | 3_2:-61981698 | Msa0415650:intron |
| TAAGAGCTTGATGACCACAT+TGG | 0.682538 | 3_2:+61980939 | None:intergenic |
| GTTGTAAAATCCATTGCCAG+AGG | 0.687105 | 3_2:+61980967 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTAAATTATTTGAAAAT+AGG | + | chr3_2:61981870-61981889 | None:intergenic | 10.0% |
| !!! | TTTTCAAATAATTTAGAAAA+AGG | - | chr3_2:61981871-61981890 | Msa0415650:intron | 10.0% |
| !!! | TTTTACTAATTAATTCAATA+TGG | - | chr3_2:61982677-61982696 | Msa0415650:intron | 10.0% |
| !!! | ATTTTAACAAATATGTTAGA+GGG | + | chr3_2:61981082-61981101 | None:intergenic | 15.0% |
| !!! | AATTTTAACAAATATGTTAG+AGG | + | chr3_2:61981083-61981102 | None:intergenic | 15.0% |
| !!! | TATAAACTATTTTGAAATAG+CGG | + | chr3_2:61981139-61981158 | None:intergenic | 15.0% |
| !! | ACATATATAAAGTATATTGT+AGG | - | chr3_2:61981622-61981641 | Msa0415650:intron | 15.0% |
| !!! | AACTTTTGAAAAGATAAAAT+AGG | + | chr3_2:61981692-61981711 | None:intergenic | 15.0% |
| !! | TTAGACATGATATATATTAT+TGG | - | chr3_2:61981975-61981994 | Msa0415650:intron | 15.0% |
| !! | CTAATTATGTGATAATTATA+GGG | + | chr3_2:61982045-61982064 | None:intergenic | 15.0% |
| !! | AATAGTAATAATTGTAAAAG+AGG | + | chr3_2:61982078-61982097 | None:intergenic | 15.0% |
| !! | AGAAAATTAATAGTTATATG+AGG | - | chr3_2:61983001-61983020 | Msa0415650:intron | 15.0% |
| !!! | AAATAGAAGAATTTTATAGT+TGG | - | chr3_2:61983110-61983129 | Msa0415650:intron | 15.0% |
| !!! | AATGTTAGTTTTTAGTAATT+GGG | + | chr3_2:61983150-61983169 | None:intergenic | 15.0% |
| !!! | AAATGTTAGTTTTTAGTAAT+TGG | + | chr3_2:61983151-61983170 | None:intergenic | 15.0% |
| !!! | TATTTTTCATTAACTTCAAA+AGG | - | chr3_2:61983391-61983410 | Msa0415650:intron | 15.0% |
| !!! | NNNNNNNNTACTTTGAAGGT+TGG | - | chr3_2:61980858-61980877 | Msa0415650:three_prime_UTR | 20.0% |
| !! | CATTTCATTTACTATCATTA+AGG | + | chr3_2:61981383-61981402 | None:intergenic | 20.0% |
| !! | TCAAATAATTTAGAAAAAGG+TGG | - | chr3_2:61981874-61981893 | Msa0415650:intron | 20.0% |
| !! | ATACTTTAGATAGTTGTTAT+AGG | - | chr3_2:61981909-61981928 | Msa0415650:CDS | 20.0% |
| !! | GCTAATTATGTGATAATTAT+AGG | + | chr3_2:61982046-61982065 | None:intergenic | 20.0% |
| !! | TTTAACTAAACCAATCATTA+GGG | + | chr3_2:61982156-61982175 | None:intergenic | 20.0% |
| !!! | TTTTAACTAAACCAATCATT+AGG | + | chr3_2:61982157-61982176 | None:intergenic | 20.0% |
| !!! | TTTTCATTTATTGATGAATG+TGG | - | chr3_2:61982523-61982542 | Msa0415650:intron | 20.0% |
| !! | TTAGAATACATTTCACTAAA+TGG | - | chr3_2:61983055-61983074 | Msa0415650:intron | 20.0% |
| !! | AACTAACATTTGATATGTTA+AGG | - | chr3_2:61983160-61983179 | Msa0415650:intron | 20.0% |
| !!! | TATTACACATTGATTATCAT+TGG | + | chr3_2:61983304-61983323 | None:intergenic | 20.0% |
| !! | TAAAGCTTCTTCTATTTAAT+GGG | + | chr3_2:61983568-61983587 | None:intergenic | 20.0% |
| !! | ATAAAGCTTCTTCTATTTAA+TGG | + | chr3_2:61983569-61983588 | None:intergenic | 20.0% |
| ! | ACATTAATTCCACTTAAACA+TGG | - | chr3_2:61980724-61980743 | Msa0415650:three_prime_UTR | 25.0% |
| ! | CAAAAGAAAGTGAAACAATT+AGG | + | chr3_2:61980944-61980963 | None:intergenic | 25.0% |
| ! | AGTAAATGAAATGAGATTAG+TGG | - | chr3_2:61981390-61981409 | Msa0415650:intron | 25.0% |
| ! | GTAAATGAAATGAGATTAGT+GGG | - | chr3_2:61981391-61981410 | Msa0415650:intron | 25.0% |
| ! | TTGTGCTTATTTCAAAACAA+AGG | + | chr3_2:61981471-61981490 | None:intergenic | 25.0% |
| ! | TAAGCACAACTATTTATGTA+TGG | - | chr3_2:61981482-61981501 | Msa0415650:intron | 25.0% |
| ! | AACTTTGTTAAACCACTATT+TGG | - | chr3_2:61981806-61981825 | Msa0415650:intron | 25.0% |
| !!! | CTCAGATATTTCTTTTAAGT+TGG | - | chr3_2:61981952-61981971 | Msa0415650:intron | 25.0% |
| ! | ATCATTAGGGATAGAATAAA+AGG | + | chr3_2:61982143-61982162 | None:intergenic | 25.0% |
| ! | TTTATTCTATCCCTAATGAT+TGG | - | chr3_2:61982143-61982162 | Msa0415650:intron | 25.0% |
| ! | TCATGATTCATGTAGTAATA+AGG | + | chr3_2:61982192-61982211 | None:intergenic | 25.0% |
| !!! | CCATTTCATTTTTCACATTT+CGG | - | chr3_2:61982335-61982354 | Msa0415650:intron | 25.0% |
| !!! | AGTCATTTTTGTGTTTGTTT+AGG | - | chr3_2:61982360-61982379 | Msa0415650:intron | 25.0% |
| !!! | GTCATTTTTGTGTTTGTTTA+GGG | - | chr3_2:61982361-61982380 | Msa0415650:intron | 25.0% |
| !!! | GGTTTTGTATTTTCTTTTGT+AGG | + | chr3_2:61982400-61982419 | None:intergenic | 25.0% |
| ! | GACAACAAAATTATATCTCA+TGG | - | chr3_2:61982558-61982577 | Msa0415650:intron | 25.0% |
| ! | TAGAATGGCTTATCAAAATA+AGG | + | chr3_2:61982771-61982790 | None:intergenic | 25.0% |
| !!! | ACACTAAAGAAGTTTTAACT+AGG | - | chr3_2:61982919-61982938 | Msa0415650:intron | 25.0% |
| !!! | TTAGTAGTTGTGTTAGTTTT+TGG | + | chr3_2:61982962-61982981 | None:intergenic | 25.0% |
| !!! | ACATATTAAGTATTGAGAAG+TGG | + | chr3_2:61983209-61983228 | None:intergenic | 25.0% |
| ! | AAAGCTTCTTCTATTTAATG+GGG | + | chr3_2:61983567-61983586 | None:intergenic | 25.0% |
| ! | ACATGCATGAAATTAATACA+AGG | + | chr3_2:61983633-61983652 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTCTACTTCCTCT+TGG | - | chr3_2:61980902-61980921 | Msa0415650:three_prime_UTR | 30.0% |
| CATAGTACTAATTAACCAAG+AGG | + | chr3_2:61980920-61980939 | None:intergenic | 30.0% | |
| ! | GCATTTTCCTTAATTTTCCA+TGG | - | chr3_2:61980963-61980982 | Msa0415650:CDS | 30.0% |
| ! | CTTTTTGCCATGGAAAATTA+AGG | + | chr3_2:61980973-61980992 | None:intergenic | 30.0% |
| !! | TAGTACTGATTCTAAAGGAA+TGG | - | chr3_2:61981031-61981050 | Msa0415650:CDS | 30.0% |
| ! | CATGTGTTATTATAAGCACA+AGG | + | chr3_2:61981525-61981544 | None:intergenic | 30.0% |
| TTGCATGGATAAACTTTGTT+AGG | + | chr3_2:61981727-61981746 | None:intergenic | 30.0% | |
| AATCAACACTTACCAAATAG+TGG | + | chr3_2:61981821-61981840 | None:intergenic | 30.0% | |
| GCACTTGATCTAAATAATTG+TGG | + | chr3_2:61982002-61982021 | None:intergenic | 30.0% | |
| TGATTCATGTAGTAATAAGG+TGG | + | chr3_2:61982189-61982208 | None:intergenic | 30.0% | |
| CAAAAGATGTACTCAAAGAA+AGG | - | chr3_2:61982251-61982270 | Msa0415650:intron | 30.0% | |
| ! | AAGGTATTATGACAAGACTA+AGG | - | chr3_2:61982270-61982289 | Msa0415650:intron | 30.0% |
| ATTATGACAAGACTAAGGTA+AGG | - | chr3_2:61982275-61982294 | Msa0415650:intron | 30.0% | |
| CCGAAATGTGAAAAATGAAA+TGG | + | chr3_2:61982338-61982357 | None:intergenic | 30.0% | |
| GTATGAAGTTTGAATTCTTG+TGG | + | chr3_2:61982421-61982440 | None:intergenic | 30.0% | |
| ! | TGATGAATGTGGTTTTTCTT+AGG | - | chr3_2:61982534-61982553 | Msa0415650:intron | 30.0% |
| !! | CCTTTGTTATTTACCTTTGT+GGG | + | chr3_2:61982794-61982813 | None:intergenic | 30.0% |
| !! | TCCTTTGTTATTTACCTTTG+TGG | + | chr3_2:61982795-61982814 | None:intergenic | 30.0% |
| CAAAGGTAAATAACAAAGGA+TGG | - | chr3_2:61982795-61982814 | Msa0415650:intron | 30.0% | |
| ! | ACATTGGAAATCTTTTAAGC+AGG | - | chr3_2:61982859-61982878 | Msa0415650:intron | 30.0% |
| ! | CATTGGAAATCTTTTAAGCA+GGG | - | chr3_2:61982860-61982879 | Msa0415650:intron | 30.0% |
| ! | TCCTAAGTTTACAGTTTTCT+TGG | - | chr3_2:61982885-61982904 | Msa0415650:intron | 30.0% |
| !!! | CTAAAGAAGTTTTAACTAGG+AGG | - | chr3_2:61982922-61982941 | Msa0415650:intron | 30.0% |
| ATGAGGAAATTGAGAAAGAA+AGG | - | chr3_2:61983018-61983037 | Msa0415650:intron | 30.0% | |
| TTGTAGAATTGCACTACATT+TGG | - | chr3_2:61983268-61983287 | Msa0415650:intron | 30.0% | |
| ! | TCTTGACAAACTTTTTGCCA+TGG | + | chr3_2:61980983-61981002 | None:intergenic | 35.0% |
| CTTCACAATCTTCATCTCAA+TGG | - | chr3_2:61981006-61981025 | Msa0415650:CDS | 35.0% | |
| !! | TGGAGTAGTACTGATTCTAA+AGG | - | chr3_2:61981026-61981045 | Msa0415650:CDS | 35.0% |
| !! | GAGGGTACTGTAAAAAATCT+AGG | + | chr3_2:61981064-61981083 | None:intergenic | 35.0% |
| TTATACTAAACAACGTGTCG+TGG | - | chr3_2:61981154-61981173 | Msa0415650:intron | 35.0% | |
| GCTATAACGCTATAGCATAA+CGG | + | chr3_2:61981203-61981222 | None:intergenic | 35.0% | |
| ! | CAATAAGCGTCGTTAAATAG+CGG | + | chr3_2:61981227-61981246 | None:intergenic | 35.0% |
| ACGGTATGTATGAAGGATTT+GGG | - | chr3_2:61981251-61981270 | Msa0415650:intron | 35.0% | |
| AACTTGCATCACAATGTTGT+TGG | - | chr3_2:61981281-61981300 | Msa0415650:intron | 35.0% | |
| AATGAAATGAGATTAGTGGG+AGG | - | chr3_2:61981394-61981413 | Msa0415650:intron | 35.0% | |
| ! | GTGTTATTATAAGCACAAGG+TGG | + | chr3_2:61981522-61981541 | None:intergenic | 35.0% |
| CATGGATAAACTTTGTTAGG+TGG | + | chr3_2:61981724-61981743 | None:intergenic | 35.0% | |
| ATGACAAGTAGAATGTTGCA+TGG | + | chr3_2:61981742-61981761 | None:intergenic | 35.0% | |
| AAAGGACTAGAAACAGAGAA+AGG | + | chr3_2:61982125-61982144 | None:intergenic | 35.0% | |
| TCATGTAGTAATAAGGTGGA+AGG | + | chr3_2:61982185-61982204 | None:intergenic | 35.0% | |
| GACTAAGGTAAGGAATTACA+TGG | - | chr3_2:61982285-61982304 | Msa0415650:intron | 35.0% | |
| TATGGAACAGATGATTGAAG+AGG | - | chr3_2:61982695-61982714 | Msa0415650:intron | 35.0% | |
| ATTTACCTTTGTGGGTAGAA+TGG | + | chr3_2:61982786-61982805 | None:intergenic | 35.0% | |
| CCCACAAAGGTAAATAACAA+AGG | - | chr3_2:61982791-61982810 | Msa0415650:intron | 35.0% | |
| GCCAAGAAAACTGTAAACTT+AGG | + | chr3_2:61982889-61982908 | None:intergenic | 35.0% | |
| ACATTTGATATGTTAAGGCG+TGG | - | chr3_2:61983165-61983184 | Msa0415650:intron | 35.0% | |
| CATTTGATATGTTAAGGCGT+GGG | - | chr3_2:61983166-61983185 | Msa0415650:intron | 35.0% | |
| ! | CACATTGATTATCATTGGAC+CGG | + | chr3_2:61983299-61983318 | None:intergenic | 35.0% |
| ATGTGAATGCATGATTCTCT+TGG | + | chr3_2:61983463-61983482 | None:intergenic | 35.0% | |
| ! | TTTTACAACATGCACCAATG+TGG | - | chr3_2:61983523-61983542 | Msa0415650:intron | 35.0% |
| TTGCTCTCTCCATGTTTAAG+TGG | + | chr3_2:61980736-61980755 | None:intergenic | 40.0% | |
| TAACGACGCTTATTGTTCCA+CGG | - | chr3_2:61981232-61981251 | Msa0415650:intron | 40.0% | |
| TTGTTCCACGGTATGTATGA+AGG | - | chr3_2:61981244-61981263 | Msa0415650:intron | 40.0% | |
| CAAATCCTTCATACATACCG+TGG | + | chr3_2:61981252-61981271 | None:intergenic | 40.0% | |
| CACGGTATGTATGAAGGATT+TGG | - | chr3_2:61981250-61981269 | Msa0415650:intron | 40.0% | |
| TCTGAGTGCAAAATTAAGCG+TGG | + | chr3_2:61981938-61981957 | None:intergenic | 40.0% | |
| GTGCATTACCAACAACACTA+TGG | - | chr3_2:61982018-61982037 | Msa0415650:CDS | 40.0% | |
| TATAGGGTCCATAGTGTTGT+TGG | + | chr3_2:61982029-61982048 | None:intergenic | 40.0% | |
| !! | ACAAGAGGAGAAGTTGATGA+AGG | - | chr3_2:61982594-61982613 | Msa0415650:intron | 40.0% |
| ! | AGGAAGAAATCCGTTTGCTA+AGG | - | chr3_2:61982715-61982734 | Msa0415650:intron | 40.0% |
| ! | AGAAATCCGTTTGCTAAGGA+AGG | - | chr3_2:61982719-61982738 | Msa0415650:intron | 40.0% |
| CCATTTCCTTCCTTAGCAAA+CGG | + | chr3_2:61982728-61982747 | None:intergenic | 40.0% | |
| ATAAGCCATTCTACCCACAA+AGG | - | chr3_2:61982778-61982797 | Msa0415650:intron | 40.0% | |
| GTTGTAAAATCCATTGCCAG+AGG | + | chr3_2:61983512-61983531 | None:intergenic | 40.0% | |
| ! | TAAGAGCTTGATGACCACAT+TGG | + | chr3_2:61983540-61983559 | None:intergenic | 40.0% |
| ! | CAAGTTTTCTCTCTATGGCA+TGG | + | chr3_2:61983666-61983685 | None:intergenic | 40.0% |
| ! | GCTCTCAAGTTTTCTCTCTA+TGG | + | chr3_2:61983671-61983690 | None:intergenic | 40.0% |
| AATCTCGCCGTCTAATTAAG+CGG | + | chr3_2:61983714-61983733 | None:intergenic | 40.0% | |
| GGAGTTGAGAAAGAGACAAG+AGG | - | chr3_2:61982579-61982598 | Msa0415650:intron | 45.0% | |
| ! | CCGTTTGCTAAGGAAGGAAA+TGG | - | chr3_2:61982725-61982744 | Msa0415650:intron | 45.0% |
| ! | TAAGGCATCAATTGAGCTCG+TGG | + | chr3_2:61982753-61982772 | None:intergenic | 45.0% |
| GCATATGTGTGCAAGCACAT+TGG | - | chr3_2:61982843-61982862 | Msa0415650:intron | 45.0% | |
| ! | ACAGTTTTCTTGGCGAGCTT+AGG | - | chr3_2:61982895-61982914 | Msa0415650:intron | 45.0% |
| TGCACTACATTTGGCAAAGC+CGG | - | chr3_2:61983277-61983296 | Msa0415650:intron | 45.0% | |
| ACATGATGAGTAGCAAGTGC+TGG | - | chr3_2:61983479-61983498 | Msa0415650:CDS | 45.0% | |
| AATTAAGCGGAGCTAGGCTA+TGG | + | chr3_2:61983701-61983720 | None:intergenic | 45.0% | |
| CCTAGCTCCGCTTAATTAGA+CGG | - | chr3_2:61983704-61983723 | Msa0415650:intron | 45.0% | |
| TGTGCTTGCACACATATGCG+CGG | + | chr3_2:61982842-61982861 | None:intergenic | 50.0% | |
| CCGTCTAATTAAGCGGAGCT+AGG | + | chr3_2:61983707-61983726 | None:intergenic | 50.0% | |
| GTGCTTGCACACATATGCGC+GGG | + | chr3_2:61982841-61982860 | None:intergenic | 55.0% | |
| !! | AAGTGCTGGAGCTGCACCTC+TGG | - | chr3_2:61983493-61983512 | Msa0415650:intron | 60.0% |
| TGGAGCTGCACCTCTGGCAA+TGG | - | chr3_2:61983499-61983518 | Msa0415650:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 61980709 | 61983789 | 61980709 | ID=Msa0415650;Name=Msa0415650 |
| chr3_2 | mRNA | 61980709 | 61983789 | 61980709 | ID=Msa0415650-mRNA-1;Parent=Msa0415650;Name=Msa0415650-mRNA-1;_AED=0.15;_eAED=0.15;_QI=34|1|1|1|0.66|0.71|7|213|173 |
| chr3_2 | exon | 61980709 | 61981054 | 61980709 | ID=Msa0415650-mRNA-1:exon:13221;Parent=Msa0415650-mRNA-1 |
| chr3_2 | exon | 61981699 | 61981793 | 61981699 | ID=Msa0415650-mRNA-1:exon:13220;Parent=Msa0415650-mRNA-1 |
| chr3_2 | exon | 61981883 | 61981942 | 61981883 | ID=Msa0415650-mRNA-1:exon:13219;Parent=Msa0415650-mRNA-1 |
| chr3_2 | exon | 61982018 | 61982116 | 61982018 | ID=Msa0415650-mRNA-1:exon:13218;Parent=Msa0415650-mRNA-1 |
| chr3_2 | exon | 61982207 | 61982248 | 61982207 | ID=Msa0415650-mRNA-1:exon:13217;Parent=Msa0415650-mRNA-1 |
| chr3_2 | exon | 61983446 | 61983509 | 61983446 | ID=Msa0415650-mRNA-1:exon:13216;Parent=Msa0415650-mRNA-1 |
| chr3_2 | exon | 61983727 | 61983789 | 61983727 | ID=Msa0415650-mRNA-1:exon:13215;Parent=Msa0415650-mRNA-1 |
| chr3_2 | five_prime_UTR | 61983756 | 61983789 | 61983756 | ID=Msa0415650-mRNA-1:five_prime_utr;Parent=Msa0415650-mRNA-1 |
| chr3_2 | CDS | 61983727 | 61983755 | 61983727 | ID=Msa0415650-mRNA-1:cds;Parent=Msa0415650-mRNA-1 |
| chr3_2 | CDS | 61983446 | 61983509 | 61983446 | ID=Msa0415650-mRNA-1:cds;Parent=Msa0415650-mRNA-1 |
| chr3_2 | CDS | 61982207 | 61982248 | 61982207 | ID=Msa0415650-mRNA-1:cds;Parent=Msa0415650-mRNA-1 |
| chr3_2 | CDS | 61982018 | 61982116 | 61982018 | ID=Msa0415650-mRNA-1:cds;Parent=Msa0415650-mRNA-1 |
| chr3_2 | CDS | 61981883 | 61981942 | 61981883 | ID=Msa0415650-mRNA-1:cds;Parent=Msa0415650-mRNA-1 |
| chr3_2 | CDS | 61981699 | 61981793 | 61981699 | ID=Msa0415650-mRNA-1:cds;Parent=Msa0415650-mRNA-1 |
| chr3_2 | CDS | 61980922 | 61981054 | 61980922 | ID=Msa0415650-mRNA-1:cds;Parent=Msa0415650-mRNA-1 |
| chr3_2 | three_prime_UTR | 61980709 | 61980921 | 61980709 | ID=Msa0415650-mRNA-1:three_prime_utr;Parent=Msa0415650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
