Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460480 | XP_003600660.1 | 97.110 | 173 | 5 | 0 | 1 | 173 | 1 | 173 | 1.36e-123 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460480 | sp|Q5XVC4|MDP60_ARATH | 47.273 | 110 | 56 | 1 | 52 | 159 | 365 | 474 | 5.32e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460480 | G7J8N4 | 97.110 | 173 | 5 | 0 | 1 | 173 | 1 | 173 | 6.48e-124 | 355 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0415650 | Msa0460480 | 0.818830 | 1.597339e-52 | -8.615850e-47 |
| Msa0460480 | Msa1024740 | 0.811995 | 5.297547e-51 | -8.615850e-47 |
| Msa0460480 | Msa1063500 | 0.818055 | 2.393330e-52 | -8.615850e-47 |
| Msa0460480 | Msa1108790 | 0.803892 | 2.806775e-49 | -8.615850e-47 |
| Msa0460480 | Msa1152510 | 0.804929 | 1.705977e-49 | -8.615850e-47 |
| Msa0251080 | Msa0460480 | 0.801441 | 8.989515e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460480 | MtrunA17_Chr3g0109961 | 97.110 | 173 | 5 | 0 | 1 | 173 | 1 | 173 | 1.25e-127 | 355 |
| Msa0460480 | MtrunA17_Chr4g0051971 | 86.614 | 127 | 17 | 0 | 46 | 172 | 6 | 132 | 3.71e-82 | 239 |
| Msa0460480 | MtrunA17_Chr6g0454541 | 47.863 | 117 | 59 | 1 | 49 | 163 | 366 | 482 | 8.78e-28 | 107 |
| Msa0460480 | MtrunA17_Chr7g0218721 | 53.012 | 83 | 39 | 0 | 49 | 131 | 337 | 419 | 2.68e-22 | 92.4 |
| Msa0460480 | MtrunA17_Chr4g0040361 | 41.250 | 80 | 45 | 2 | 56 | 134 | 640 | 718 | 2.75e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460480 | AT5G37478.1 | 56.707 | 164 | 63 | 3 | 6 | 161 | 9 | 172 | 2.18e-56 | 175 |
| Msa0460480 | AT5G37478.2 | 59.712 | 139 | 48 | 3 | 31 | 161 | 1 | 139 | 3.43e-51 | 161 |
| Msa0460480 | AT5G37478.4 | 52.532 | 158 | 59 | 2 | 6 | 161 | 9 | 152 | 3.19e-49 | 156 |
| Msa0460480 | AT3G01015.1 | 47.273 | 110 | 56 | 1 | 52 | 159 | 365 | 474 | 5.41e-25 | 100 |
| Msa0460480 | AT5G15510.1 | 48.515 | 101 | 50 | 1 | 53 | 151 | 376 | 476 | 4.94e-24 | 97.8 |
| Msa0460480 | AT5G15510.4 | 52.564 | 78 | 37 | 0 | 53 | 130 | 376 | 453 | 5.14e-21 | 89.4 |
| Msa0460480 | AT5G15510.3 | 52.564 | 78 | 37 | 0 | 53 | 130 | 376 | 453 | 5.14e-21 | 89.4 |
| Msa0460480 | AT5G15510.2 | 51.807 | 83 | 39 | 1 | 53 | 134 | 376 | 458 | 5.17e-21 | 89.4 |
| Msa0460480 | AT5G37478.3 | 56.098 | 82 | 30 | 2 | 6 | 81 | 9 | 90 | 2.95e-18 | 77.0 |
| Msa0460480 | AT1G03780.3 | 45.570 | 79 | 41 | 2 | 56 | 133 | 642 | 719 | 8.35e-13 | 65.9 |
| Msa0460480 | AT1G03780.2 | 45.570 | 79 | 41 | 2 | 56 | 133 | 642 | 719 | 8.54e-13 | 65.9 |
Find 37 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAGTTTCTTCTATTTAA+TGG | 0.182331 | 3_3:+57841804 | None:intergenic |
| TAAAGTTTCTTCTATTTAAT+GGG | 0.263147 | 3_3:+57841805 | None:intergenic |
| TCCTTTGTTATTTACCTTTG+TGG | 0.298093 | 3_3:+57842580 | None:intergenic |
| TAGAATGGCTTATCAAAATA+AGG | 0.325849 | 3_3:+57842604 | None:intergenic |
| CCTTTGTTATTTACCTTTGT+GGG | 0.335145 | 3_3:+57842581 | None:intergenic |
| AAACACTAAATCTACTTTGA+AGG | 0.375816 | 3_3:-57844523 | Msa0460480:intron |
| AAGTGCTGGAGCTGCACCTC+TGG | 0.428196 | 3_3:-57841877 | Msa0460480:CDS |
| ATTTACCTTTGTGGGTAGAA+TGG | 0.428333 | 3_3:+57842589 | None:intergenic |
| TTGCTCTCTCCATGTTTAAG+TGG | 0.437896 | 3_3:+57844544 | None:intergenic |
| CCGTTTGCTAAGGAAGGAAA+TGG | 0.439693 | 3_3:-57842647 | Msa0460480:CDS |
| CCATTTCCTTCCTTAGCAAA+CGG | 0.467636 | 3_3:+57842647 | None:intergenic |
| CTTCACAATCTTCATCTCAA+TGG | 0.487090 | 3_3:-57844371 | Msa0460480:CDS |
| CCGTCTAAGTAAGCGGAGCT+AGG | 0.506419 | 3_3:+57841666 | None:intergenic |
| CAAAAGATGTACTCAAAGAA+AGG | 0.509955 | 3_3:-57843121 | Msa0460480:CDS |
| TGGAGCTGCACCTCTGGCAA+TGG | 0.510035 | 3_3:-57841871 | Msa0460480:CDS |
| GACAACAAAATTATATCTCA+TGG | 0.511192 | 3_3:-57842814 | Msa0460480:CDS |
| ACAAGAGGAGAAGTTGATGA+AGG | 0.523831 | 3_3:-57842778 | Msa0460480:intron |
| ATGTGAATGCATGATTCTCT+TGG | 0.533305 | 3_3:+57841910 | None:intergenic |
| ACATGATGAGTAGCAAGTGC+TGG | 0.534456 | 3_3:-57841891 | Msa0460480:CDS |
| GTATGAAGTTTGAATTCTTG+TGG | 0.536536 | 3_3:+57842954 | None:intergenic |
| CCTAGCTCCGCTTACTTAGA+CGG | 0.539579 | 3_3:-57841666 | Msa0460480:three_prime_UTR |
| AAGGTATTATGACAAGACTA+AGG | 0.541632 | 3_3:-57843102 | Msa0460480:intron |
| TGGAGTAGTACTGATTCTAA+AGG | 0.544697 | 3_3:-57844351 | Msa0460480:CDS |
| AAGTAAGCGGAGCTAGGCTA+TGG | 0.547846 | 3_3:+57841672 | None:intergenic |
| AGGAAGAAATCCGTTTGCTA+AGG | 0.565674 | 3_3:-57842657 | Msa0460480:CDS |
| AGAAATCCGTTTGCTAAGGA+AGG | 0.569795 | 3_3:-57842653 | Msa0460480:CDS |
| TAAGGCATCAATTGAGCTCG+TGG | 0.570757 | 3_3:+57842622 | None:intergenic |
| TAGTACTGATTCTAAAGGAA+TGG | 0.572965 | 3_3:-57844346 | Msa0460480:intron |
| ACATTAATTCCACTTAAACA+TGG | 0.573030 | 3_3:-57844553 | Msa0460480:exon |
| AAAGTTTCTTCTATTTAATG+GGG | 0.581591 | 3_3:+57841806 | None:intergenic |
| TATGGAACAGATGATTGAAG+AGG | 0.620275 | 3_3:-57842677 | Msa0460480:intron |
| ACATGCATGAAATTAATACA+AGG | 0.623947 | 3_3:+57841740 | None:intergenic |
| AATCTCGCCGTCTAAGTAAG+CGG | 0.634878 | 3_3:+57841659 | None:intergenic |
| GGAGTTGAGAAAGAGACAAG+AGG | 0.644836 | 3_3:-57842793 | Msa0460480:CDS |
| ATAAGCCATTCTACCCACAA+AGG | 0.650899 | 3_3:-57842594 | Msa0460480:intron |
| TAAGAGCTTGATGACCACAT+TGG | 0.682538 | 3_3:+57841833 | None:intergenic |
| GTTGTAAAATCCATTGCCAG+AGG | 0.687105 | 3_3:+57841861 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTAAATTATTTGAAAAT+AGG | + | chr3_3:57842675-57842694 | None:intergenic | 10.0% |
| !!! | TTTTCAAATAATTTAGAAAA+AGG | - | chr3_3:57842676-57842695 | Msa0460480:intron | 10.0% |
| !!! | TTTTACTAATTAATTCAATA+TGG | - | chr3_3:57843482-57843501 | Msa0460480:intron | 10.0% |
| !!! | ATTTTAACAAATATGTTAGA+GGG | + | chr3_3:57841882-57841901 | None:intergenic | 15.0% |
| !!! | AATTTTAACAAATATGTTAG+AGG | + | chr3_3:57841883-57841902 | None:intergenic | 15.0% |
| !!! | TATAAACTATTTTGAAATAG+CGG | + | chr3_3:57841939-57841958 | None:intergenic | 15.0% |
| !! | ACATATATAAAGTATATTGT+AGG | - | chr3_3:57842422-57842441 | Msa0460480:intron | 15.0% |
| !!! | AACTTTTGAAAAGATAAAAT+AGG | + | chr3_3:57842497-57842516 | None:intergenic | 15.0% |
| !! | TTAGACATGATATATATTAT+TGG | - | chr3_3:57842780-57842799 | Msa0460480:CDS | 15.0% |
| !! | CTAATTATGTGATAATTATA+GGG | + | chr3_3:57842850-57842869 | None:intergenic | 15.0% |
| !! | AATAGTAATAATTGTAAAAG+AGG | + | chr3_3:57842883-57842902 | None:intergenic | 15.0% |
| !! | AGAAAATTAATAGTTATATG+AGG | - | chr3_3:57843808-57843827 | Msa0460480:intron | 15.0% |
| !!! | AAATAGAAGAATTTTATAGT+TGG | - | chr3_3:57843917-57843936 | Msa0460480:intron | 15.0% |
| !!! | AAATGTTAGTTTTTAGTAAT+TGG | + | chr3_3:57843958-57843977 | None:intergenic | 15.0% |
| !!! | TATTTTTCATTAACTTCAAA+AGG | - | chr3_3:57844198-57844217 | Msa0460480:intron | 15.0% |
| !! | TAAAGTTTCTTCTATTTAAT+GGG | + | chr3_3:57844375-57844394 | None:intergenic | 15.0% |
| !! | ATAAAGTTTCTTCTATTTAA+TGG | + | chr3_3:57844376-57844395 | None:intergenic | 15.0% |
| !! | CATTTCATTTACTATCATTA+AGG | + | chr3_3:57842183-57842202 | None:intergenic | 20.0% |
| !! | TCAAATAATTTAGAAAAAGG+TGG | - | chr3_3:57842679-57842698 | Msa0460480:intron | 20.0% |
| !! | ATACTTTAGATAGTTGTTAT+AGG | - | chr3_3:57842714-57842733 | Msa0460480:intron | 20.0% |
| !! | GCTAATTATGTGATAATTAT+AGG | + | chr3_3:57842851-57842870 | None:intergenic | 20.0% |
| !! | TTTAACTAAACCAATCATTA+GGG | + | chr3_3:57842961-57842980 | None:intergenic | 20.0% |
| !!! | TTTTAACTAAACCAATCATT+AGG | + | chr3_3:57842962-57842981 | None:intergenic | 20.0% |
| !!! | TTTTCATTTATTGATGAATG+TGG | - | chr3_3:57843328-57843347 | Msa0460480:intron | 20.0% |
| !!! | TATTACACATTGATTATCAT+TGG | + | chr3_3:57844111-57844130 | None:intergenic | 20.0% |
| !! | AAAGTTTCTTCTATTTAATG+GGG | + | chr3_3:57844374-57844393 | None:intergenic | 20.0% |
| ! | ACATTAATTCCACTTAAACA+TGG | - | chr3_3:57841624-57841643 | Msa0460480:three_prime_UTR | 25.0% |
| ! | AAACACTAAATCTACTTTGA+AGG | - | chr3_3:57841654-57841673 | Msa0460480:three_prime_UTR | 25.0% |
| ! | CAAAAGAAAGTGAAACAATT+AGG | + | chr3_3:57841744-57841763 | None:intergenic | 25.0% |
| ! | AGTAAATGAAATGAGATTAG+TGG | - | chr3_3:57842190-57842209 | Msa0460480:intron | 25.0% |
| ! | GTAAATGAAATGAGATTAGT+GGG | - | chr3_3:57842191-57842210 | Msa0460480:intron | 25.0% |
| ! | TTGTGCTTATTTCAAAACAA+AGG | + | chr3_3:57842271-57842290 | None:intergenic | 25.0% |
| ! | TAAGCACAACTATTTATGTA+TGG | - | chr3_3:57842282-57842301 | Msa0460480:intron | 25.0% |
| ! | AACTTTGTTAAACCACTATT+TGG | - | chr3_3:57842611-57842630 | Msa0460480:CDS | 25.0% |
| !!! | CTCAGATATTTCTTTTAAGT+TGG | - | chr3_3:57842757-57842776 | Msa0460480:intron | 25.0% |
| ! | ATCATTAGGGATAGAATAAA+AGG | + | chr3_3:57842948-57842967 | None:intergenic | 25.0% |
| ! | TTTATTCTATCCCTAATGAT+TGG | - | chr3_3:57842948-57842967 | Msa0460480:CDS | 25.0% |
| ! | TCATGATTCATGTAGTAATA+AGG | + | chr3_3:57842997-57843016 | None:intergenic | 25.0% |
| !!! | CCATTTCATTTTTCACATTT+CGG | - | chr3_3:57843140-57843159 | Msa0460480:intron | 25.0% |
| !!! | AGTCATTTTTGTGTTTGTTT+AGG | - | chr3_3:57843165-57843184 | Msa0460480:intron | 25.0% |
| !!! | GTCATTTTTGTGTTTGTTTA+GGG | - | chr3_3:57843166-57843185 | Msa0460480:intron | 25.0% |
| !!! | GGTTTTGTATTTTCTTTTGT+AGG | + | chr3_3:57843205-57843224 | None:intergenic | 25.0% |
| ! | GACAACAAAATTATATCTCA+TGG | - | chr3_3:57843363-57843382 | Msa0460480:intron | 25.0% |
| ! | TAGAATGGCTTATCAAAATA+AGG | + | chr3_3:57843576-57843595 | None:intergenic | 25.0% |
| !!! | ACACTAAAGAAGTTTTAACT+AGG | - | chr3_3:57843726-57843745 | Msa0460480:intron | 25.0% |
| !!! | TTAGTAGTTGTGTTAGTTTT+TGG | + | chr3_3:57843769-57843788 | None:intergenic | 25.0% |
| !!! | ACATATTAAGTATTGAGAAG+TGG | + | chr3_3:57844016-57844035 | None:intergenic | 25.0% |
| ! | ACATGCATGAAATTAATACA+AGG | + | chr3_3:57844440-57844459 | None:intergenic | 25.0% |
| ! | ACTAAATCTACTTTGAAGGT+TGG | - | chr3_3:57841658-57841677 | Msa0460480:three_prime_UTR | 30.0% |
| !!! | TAGTTTTTTCTACTTCCTCT+TGG | - | chr3_3:57841702-57841721 | Msa0460480:three_prime_UTR | 30.0% |
| CATAGTACTAATTAACCAAG+AGG | + | chr3_3:57841720-57841739 | None:intergenic | 30.0% | |
| ! | GCATTTTCCTTAATTTTCCA+TGG | - | chr3_3:57841763-57841782 | Msa0460480:three_prime_UTR | 30.0% |
| ! | CTTTTTGCCATGGAAAATTA+AGG | + | chr3_3:57841773-57841792 | None:intergenic | 30.0% |
| !! | TAGTACTGATTCTAAAGGAA+TGG | - | chr3_3:57841831-57841850 | Msa0460480:CDS | 30.0% |
| ! | CATGTGTTATTATAAGCACA+AGG | + | chr3_3:57842325-57842344 | None:intergenic | 30.0% |
| TTGCATGGATAAACTTTGTT+AGG | + | chr3_3:57842532-57842551 | None:intergenic | 30.0% | |
| AATCAACACTTACCAAATAG+TGG | + | chr3_3:57842626-57842645 | None:intergenic | 30.0% | |
| GCACTTGATCTAAATAATTG+TGG | + | chr3_3:57842807-57842826 | None:intergenic | 30.0% | |
| TGATTCATGTAGTAATAAGG+TGG | + | chr3_3:57842994-57843013 | None:intergenic | 30.0% | |
| CAAAAGATGTACTCAAAGAA+AGG | - | chr3_3:57843056-57843075 | Msa0460480:intron | 30.0% | |
| ! | AAGGTATTATGACAAGACTA+AGG | - | chr3_3:57843075-57843094 | Msa0460480:intron | 30.0% |
| ATTATGACAAGACTAAGGTA+AGG | - | chr3_3:57843080-57843099 | Msa0460480:intron | 30.0% | |
| CCGAAATGTGAAAAATGAAA+TGG | + | chr3_3:57843143-57843162 | None:intergenic | 30.0% | |
| GTATGAAGTTTGAATTCTTG+TGG | + | chr3_3:57843226-57843245 | None:intergenic | 30.0% | |
| ! | TGATGAATGTGGTTTTTCTT+AGG | - | chr3_3:57843339-57843358 | Msa0460480:intron | 30.0% |
| !! | CCTTTGTTATTTACCTTTGT+GGG | + | chr3_3:57843599-57843618 | None:intergenic | 30.0% |
| !! | TCCTTTGTTATTTACCTTTG+TGG | + | chr3_3:57843600-57843619 | None:intergenic | 30.0% |
| CAAAGGTAAATAACAAAGGA+TGG | - | chr3_3:57843600-57843619 | Msa0460480:intron | 30.0% | |
| ! | ACATTGGAAATCTTTTAAGC+AGG | - | chr3_3:57843666-57843685 | Msa0460480:intron | 30.0% |
| ! | CATTGGAAATCTTTTAAGCA+GGG | - | chr3_3:57843667-57843686 | Msa0460480:intron | 30.0% |
| ! | TCCTAAGTTTACAGTTTTCT+TGG | - | chr3_3:57843692-57843711 | Msa0460480:intron | 30.0% |
| !!! | CTAAAGAAGTTTTAACTAGG+AGG | - | chr3_3:57843729-57843748 | Msa0460480:intron | 30.0% |
| ATGAGGAAATTGAGAAAGAA+AGG | - | chr3_3:57843825-57843844 | Msa0460480:intron | 30.0% | |
| TTGTAGAATTGCACTACATT+TGG | - | chr3_3:57844075-57844094 | Msa0460480:intron | 30.0% | |
| ! | TCTTGACAAACTTTTTGCCA+TGG | + | chr3_3:57841783-57841802 | None:intergenic | 35.0% |
| CTTCACAATCTTCATCTCAA+TGG | - | chr3_3:57841806-57841825 | Msa0460480:exon | 35.0% | |
| !! | TGGAGTAGTACTGATTCTAA+AGG | - | chr3_3:57841826-57841845 | Msa0460480:CDS | 35.0% |
| !! | GAGGGTACTGTAAAAAATCT+AGG | + | chr3_3:57841864-57841883 | None:intergenic | 35.0% |
| TTATACTAAACAACGTGTCG+TGG | - | chr3_3:57841954-57841973 | Msa0460480:intron | 35.0% | |
| GCTATAACGCTATAGCATAA+CGG | + | chr3_3:57842003-57842022 | None:intergenic | 35.0% | |
| ! | CAATAAGCGTCGTTAAATAG+CGG | + | chr3_3:57842027-57842046 | None:intergenic | 35.0% |
| ACGGAATGTATGAAGGATTT+GGG | - | chr3_3:57842051-57842070 | Msa0460480:intron | 35.0% | |
| AACTTGCATCACAATGTTGT+TGG | - | chr3_3:57842081-57842100 | Msa0460480:intron | 35.0% | |
| AATGAAATGAGATTAGTGGG+AGG | - | chr3_3:57842194-57842213 | Msa0460480:intron | 35.0% | |
| ! | GTGTTATTATAAGCACAAGG+TGG | + | chr3_3:57842322-57842341 | None:intergenic | 35.0% |
| CATGGATAAACTTTGTTAGG+TGG | + | chr3_3:57842529-57842548 | None:intergenic | 35.0% | |
| ATGACAAGTAGAATGTTGCA+TGG | + | chr3_3:57842547-57842566 | None:intergenic | 35.0% | |
| AAAGGACTAGAAACAGAGAA+AGG | + | chr3_3:57842930-57842949 | None:intergenic | 35.0% | |
| TCATGTAGTAATAAGGTGGA+AGG | + | chr3_3:57842990-57843009 | None:intergenic | 35.0% | |
| GACTAAGGTAAGGAATTACA+TGG | - | chr3_3:57843090-57843109 | Msa0460480:intron | 35.0% | |
| TATGGAACAGATGATTGAAG+AGG | - | chr3_3:57843500-57843519 | Msa0460480:intron | 35.0% | |
| ATTTACCTTTGTGGGTAGAA+TGG | + | chr3_3:57843591-57843610 | None:intergenic | 35.0% | |
| CCCACAAAGGTAAATAACAA+AGG | - | chr3_3:57843596-57843615 | Msa0460480:intron | 35.0% | |
| GCCAAGAAAACTGTAAACTT+AGG | + | chr3_3:57843696-57843715 | None:intergenic | 35.0% | |
| ACATTTGATATGTTGAAGCG+TGG | - | chr3_3:57843972-57843991 | Msa0460480:intron | 35.0% | |
| CATTTGATATGTTGAAGCGT+GGG | - | chr3_3:57843973-57843992 | Msa0460480:intron | 35.0% | |
| ! | CACATTGATTATCATTGGAC+CGG | + | chr3_3:57844106-57844125 | None:intergenic | 35.0% |
| ATGTGAATGCATGATTCTCT+TGG | + | chr3_3:57844270-57844289 | None:intergenic | 35.0% | |
| ! | TTTTACAACATGCACCAATG+TGG | - | chr3_3:57844330-57844349 | Msa0460480:intron | 35.0% |
| TTGCTCTCTCCATGTTTAAG+TGG | + | chr3_3:57841636-57841655 | None:intergenic | 40.0% | |
| TAACGACGCTTATTGTTCCA+CGG | - | chr3_3:57842032-57842051 | Msa0460480:intron | 40.0% | |
| TTGTTCCACGGAATGTATGA+AGG | - | chr3_3:57842044-57842063 | Msa0460480:intron | 40.0% | |
| CAAATCCTTCATACATTCCG+TGG | + | chr3_3:57842052-57842071 | None:intergenic | 40.0% | |
| CACGGAATGTATGAAGGATT+TGG | - | chr3_3:57842050-57842069 | Msa0460480:intron | 40.0% | |
| TCTGAGTGCAAAATTAAGCG+TGG | + | chr3_3:57842743-57842762 | None:intergenic | 40.0% | |
| GTGCATTACCAACAACACTA+TGG | - | chr3_3:57842823-57842842 | Msa0460480:intron | 40.0% | |
| TATAGGGTCCATAGTGTTGT+TGG | + | chr3_3:57842834-57842853 | None:intergenic | 40.0% | |
| !! | ACAAGAGGAGAAGTTGATGA+AGG | - | chr3_3:57843399-57843418 | Msa0460480:intron | 40.0% |
| ! | AGGAAGAAATCCGTTTGCTA+AGG | - | chr3_3:57843520-57843539 | Msa0460480:intron | 40.0% |
| ! | AGAAATCCGTTTGCTAAGGA+AGG | - | chr3_3:57843524-57843543 | Msa0460480:intron | 40.0% |
| CCATTTCCTTCCTTAGCAAA+CGG | + | chr3_3:57843533-57843552 | None:intergenic | 40.0% | |
| ATAAGCCATTCTACCCACAA+AGG | - | chr3_3:57843583-57843602 | Msa0460480:intron | 40.0% | |
| GTTGTAAAATCCATTGCCAG+AGG | + | chr3_3:57844319-57844338 | None:intergenic | 40.0% | |
| ! | TAAGAGCTTGATGACCACAT+TGG | + | chr3_3:57844347-57844366 | None:intergenic | 40.0% |
| ! | CAAGTTTTCTCTCTATGGCA+TGG | + | chr3_3:57844473-57844492 | None:intergenic | 40.0% |
| ! | GCTCTCAAGTTTTCTCTCTA+TGG | + | chr3_3:57844478-57844497 | None:intergenic | 40.0% |
| GGAGTTGAGAAAGAGACAAG+AGG | - | chr3_3:57843384-57843403 | Msa0460480:intron | 45.0% | |
| ! | CCGTTTGCTAAGGAAGGAAA+TGG | - | chr3_3:57843530-57843549 | Msa0460480:intron | 45.0% |
| ! | TAAGGCATCAATTGAGCTCG+TGG | + | chr3_3:57843558-57843577 | None:intergenic | 45.0% |
| GCATATGTGTGCAAGCACAT+TGG | - | chr3_3:57843650-57843669 | Msa0460480:intron | 45.0% | |
| ! | ACAGTTTTCTTGGCGAGCTT+AGG | - | chr3_3:57843702-57843721 | Msa0460480:intron | 45.0% |
| TGCACTACATTTGGCAAAGC+CGG | - | chr3_3:57844084-57844103 | Msa0460480:intron | 45.0% | |
| ACATGATGAGTAGCAAGTGC+TGG | - | chr3_3:57844286-57844305 | Msa0460480:intron | 45.0% | |
| AATCTCGCCGTCTAAGTAAG+CGG | + | chr3_3:57844521-57844540 | None:intergenic | 45.0% | |
| TGTGCTTGCACACATATGCG+CGG | + | chr3_3:57843649-57843668 | None:intergenic | 50.0% | |
| AAGTAAGCGGAGCTAGGCTA+TGG | + | chr3_3:57844508-57844527 | None:intergenic | 50.0% | |
| CCTAGCTCCGCTTACTTAGA+CGG | - | chr3_3:57844511-57844530 | Msa0460480:intron | 50.0% | |
| GTGCTTGCACACATATGCGC+GGG | + | chr3_3:57843648-57843667 | None:intergenic | 55.0% | |
| CCGTCTAAGTAAGCGGAGCT+AGG | + | chr3_3:57844514-57844533 | None:intergenic | 55.0% | |
| !! | AAGTGCTGGAGCTGCACCTC+TGG | - | chr3_3:57844300-57844319 | Msa0460480:intron | 60.0% |
| TGGAGCTGCACCTCTGGCAA+TGG | - | chr3_3:57844306-57844325 | Msa0460480:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 57841609 | 57844590 | 57841609 | ID=Msa0460480;Name=Msa0460480 |
| chr3_3 | mRNA | 57841609 | 57844590 | 57841609 | ID=Msa0460480-mRNA-1;Parent=Msa0460480;Name=Msa0460480-mRNA-1;_AED=0.15;_eAED=0.15;_QI=34|1|1|1|1|1|7|207|173 |
| chr3_3 | exon | 57841609 | 57841948 | 57841609 | ID=Msa0460480-mRNA-1:exon:11906;Parent=Msa0460480-mRNA-1 |
| chr3_3 | exon | 57842595 | 57842689 | 57842595 | ID=Msa0460480-mRNA-1:exon:11905;Parent=Msa0460480-mRNA-1 |
| chr3_3 | exon | 57842779 | 57842838 | 57842779 | ID=Msa0460480-mRNA-1:exon:11904;Parent=Msa0460480-mRNA-1 |
| chr3_3 | exon | 57842914 | 57843012 | 57842914 | ID=Msa0460480-mRNA-1:exon:11903;Parent=Msa0460480-mRNA-1 |
| chr3_3 | exon | 57843103 | 57843144 | 57843103 | ID=Msa0460480-mRNA-1:exon:11902;Parent=Msa0460480-mRNA-1 |
| chr3_3 | exon | 57844347 | 57844406 | 57844347 | ID=Msa0460480-mRNA-1:exon:11901;Parent=Msa0460480-mRNA-1 |
| chr3_3 | exon | 57844524 | 57844590 | 57844524 | ID=Msa0460480-mRNA-1:exon:11900;Parent=Msa0460480-mRNA-1 |
| chr3_3 | five_prime_UTR | 57844557 | 57844590 | 57844557 | ID=Msa0460480-mRNA-1:five_prime_utr;Parent=Msa0460480-mRNA-1 |
| chr3_3 | CDS | 57844524 | 57844556 | 57844524 | ID=Msa0460480-mRNA-1:cds;Parent=Msa0460480-mRNA-1 |
| chr3_3 | CDS | 57844347 | 57844406 | 57844347 | ID=Msa0460480-mRNA-1:cds;Parent=Msa0460480-mRNA-1 |
| chr3_3 | CDS | 57843103 | 57843144 | 57843103 | ID=Msa0460480-mRNA-1:cds;Parent=Msa0460480-mRNA-1 |
| chr3_3 | CDS | 57842914 | 57843012 | 57842914 | ID=Msa0460480-mRNA-1:cds;Parent=Msa0460480-mRNA-1 |
| chr3_3 | CDS | 57842779 | 57842838 | 57842779 | ID=Msa0460480-mRNA-1:cds;Parent=Msa0460480-mRNA-1 |
| chr3_3 | CDS | 57842595 | 57842689 | 57842595 | ID=Msa0460480-mRNA-1:cds;Parent=Msa0460480-mRNA-1 |
| chr3_3 | CDS | 57841816 | 57841948 | 57841816 | ID=Msa0460480-mRNA-1:cds;Parent=Msa0460480-mRNA-1 |
| chr3_3 | three_prime_UTR | 57841609 | 57841815 | 57841609 | ID=Msa0460480-mRNA-1:three_prime_utr;Parent=Msa0460480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
