Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416840 | XP_024634539.2 | 96.296 | 270 | 8 | 1 | 30 | 297 | 6 | 275 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416840 | sp|Q42440|PAI1_ARATH | 61.481 | 270 | 102 | 1 | 30 | 297 | 6 | 275 | 3.37e-119 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416840 | G7JBT1 | 95.941 | 271 | 9 | 1 | 29 | 297 | 5 | 275 | 0.0 | 527 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0369380 | Msa0416840 | 0.872239 | 3.705289e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416840 | MtrunA17_Chr3g0113661 | 95.941 | 271 | 9 | 1 | 29 | 297 | 5 | 275 | 0.0 | 527 |
| Msa0416840 | MtrunA17_Chr3g0095171 | 98.544 | 206 | 3 | 0 | 92 | 297 | 1 | 206 | 1.80e-148 | 414 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416840 | AT1G07780.5 | 61.481 | 270 | 102 | 1 | 30 | 297 | 6 | 275 | 3.42e-120 | 346 |
| Msa0416840 | AT1G07780.10 | 61.481 | 270 | 102 | 1 | 30 | 297 | 6 | 275 | 3.42e-120 | 346 |
| Msa0416840 | AT1G07780.13 | 61.481 | 270 | 102 | 1 | 30 | 297 | 6 | 275 | 3.42e-120 | 346 |
| Msa0416840 | AT1G07780.3 | 61.481 | 270 | 102 | 1 | 30 | 297 | 6 | 275 | 3.42e-120 | 346 |
| Msa0416840 | AT1G07780.12 | 61.481 | 270 | 102 | 1 | 30 | 297 | 6 | 275 | 3.42e-120 | 346 |
| Msa0416840 | AT1G07780.2 | 61.481 | 270 | 102 | 1 | 30 | 297 | 6 | 275 | 3.42e-120 | 346 |
| Msa0416840 | AT1G07780.1 | 61.481 | 270 | 102 | 1 | 30 | 297 | 6 | 275 | 3.42e-120 | 346 |
| Msa0416840 | AT1G07780.9 | 61.481 | 270 | 102 | 1 | 30 | 297 | 6 | 275 | 3.42e-120 | 346 |
| Msa0416840 | AT5G05590.1 | 61.481 | 270 | 102 | 1 | 30 | 297 | 6 | 275 | 4.70e-120 | 345 |
| Msa0416840 | AT1G07780.7 | 72.330 | 206 | 57 | 0 | 92 | 297 | 1 | 206 | 6.50e-111 | 320 |
| Msa0416840 | AT1G07780.6 | 53.241 | 216 | 97 | 2 | 30 | 241 | 6 | 221 | 1.60e-76 | 233 |
| Msa0416840 | AT1G07780.8 | 53.241 | 216 | 97 | 2 | 30 | 241 | 6 | 221 | 1.60e-76 | 233 |
| Msa0416840 | AT5G05590.4 | 53.241 | 216 | 97 | 2 | 30 | 241 | 6 | 221 | 2.45e-76 | 233 |
| Msa0416840 | AT1G07780.4 | 57.949 | 195 | 80 | 1 | 30 | 222 | 6 | 200 | 3.91e-76 | 231 |
| Msa0416840 | AT1G07780.11 | 57.949 | 195 | 80 | 1 | 30 | 222 | 6 | 200 | 3.91e-76 | 231 |
| Msa0416840 | AT5G05590.3 | 57.949 | 195 | 80 | 1 | 30 | 222 | 6 | 200 | 5.31e-76 | 231 |
| Msa0416840 | AT1G29410.1 | 56.585 | 205 | 84 | 2 | 34 | 236 | 10 | 211 | 2.74e-75 | 229 |
| Msa0416840 | AT1G29410.6 | 56.585 | 205 | 84 | 2 | 34 | 236 | 10 | 211 | 2.74e-75 | 229 |
| Msa0416840 | AT1G29410.4 | 58.639 | 191 | 77 | 1 | 34 | 222 | 10 | 200 | 6.65e-75 | 229 |
| Msa0416840 | AT1G29410.2 | 58.639 | 191 | 77 | 1 | 34 | 222 | 10 | 200 | 6.65e-75 | 229 |
| Msa0416840 | AT1G29410.7 | 57.895 | 190 | 75 | 2 | 49 | 236 | 4 | 190 | 7.30e-72 | 220 |
| Msa0416840 | AT1G29410.5 | 60.227 | 176 | 68 | 1 | 49 | 222 | 4 | 179 | 1.41e-71 | 220 |
| Msa0416840 | AT1G29410.3 | 60.227 | 176 | 68 | 1 | 49 | 222 | 4 | 179 | 1.41e-71 | 220 |
| Msa0416840 | AT5G05590.2 | 46.748 | 246 | 97 | 3 | 30 | 241 | 6 | 251 | 2.15e-70 | 218 |
Find 76 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAGGAATTGTGTTTAAA+AGG | 0.166323 | 3_2:-63888644 | None:intergenic |
| TTGAGGTTCACAATAATTTA+AGG | 0.183305 | 3_2:-63889054 | None:intergenic |
| CCGAATCTTATGCTAGAAAA+TGG | 0.273560 | 3_2:-63888127 | None:intergenic |
| GCTGGCTGATATATCATATA+TGG | 0.289604 | 3_2:+63889187 | Msa0416840:three_prime_UTR |
| TGCCAACTCATTAAGTTTGC+AGG | 0.289823 | 3_2:-63888167 | None:intergenic |
| GAAGCTGGAGCAAACTTTAT+TGG | 0.301502 | 3_2:+63888283 | Msa0416840:CDS |
| TCCTCTAGTTGATTGGGTTC+TGG | 0.309444 | 3_2:+63888674 | Msa0416840:CDS |
| AAATGGACTTGAAAACAAAA+TGG | 0.315640 | 3_2:-63889107 | None:intergenic |
| GTTTGAACAATGCAGCTTCA+TGG | 0.326335 | 3_2:+63888540 | Msa0416840:intron |
| AGCTTTCCCATCTTTGATTC+AGG | 0.337440 | 3_2:+63888578 | Msa0416840:CDS |
| GCTGCTATGGCGGCCGAAGC+TGG | 0.347935 | 3_2:+63888268 | Msa0416840:CDS |
| ATCAAGAATAGCTTCCTTCA+TGG | 0.376096 | 3_2:+63889001 | Msa0416840:CDS |
| TCTAAAGAAGAAAGAACTTT+GGG | 0.386103 | 3_2:-63889135 | None:intergenic |
| AAGAGTGTCCTCTAGTTGAT+TGG | 0.386882 | 3_2:+63888667 | Msa0416840:CDS |
| TTGCAGGAAATTTCATACTT+TGG | 0.387010 | 3_2:-63888151 | None:intergenic |
| CAGTGGGGAAGCATTTGATT+GGG | 0.387462 | 3_2:+63888821 | Msa0416840:intron |
| CTCTGTTCCACGACAGAACT+TGG | 0.395280 | 3_2:-63885756 | None:intergenic |
| TTCAACAACTGGGAGTTACT+TGG | 0.396508 | 3_2:+63887783 | Msa0416840:CDS |
| GCAGTGGGGAAGCATTTGAT+TGG | 0.399536 | 3_2:+63888820 | Msa0416840:intron |
| ACTTGAAAAGAGTAAACCTT+TGG | 0.418004 | 3_2:+63888213 | Msa0416840:CDS |
| ACAATGCAGCTTCATGGATC+TGG | 0.423857 | 3_2:+63888546 | Msa0416840:intron |
| AAGAACTTTGGGAATACAAA+TGG | 0.426464 | 3_2:-63889124 | None:intergenic |
| AATAAAGTTTGCTCCAGCTT+CGG | 0.453047 | 3_2:-63888281 | None:intergenic |
| GTCTAAAGAAGAAAGAACTT+TGG | 0.458275 | 3_2:-63889136 | None:intergenic |
| TTCCTGCAAACTTAATGAGT+TGG | 0.460023 | 3_2:+63888165 | Msa0416840:CDS |
| AGCTTCATGGATCTGGTTCG+CGG | 0.464460 | 3_2:+63888553 | Msa0416840:intron |
| TCATCCACAAATACTCCAAC+AGG | 0.465466 | 3_2:-63888394 | None:intergenic |
| TTCCACAAAAGACCGATTCC+AGG | 0.472417 | 3_2:+63887823 | Msa0416840:CDS |
| AAGCAAATATGGTTGGCTCT+TGG | 0.483948 | 3_2:+63888869 | Msa0416840:CDS |
| AGAGTGTCCTCTAGTTGATT+GGG | 0.483984 | 3_2:+63888668 | Msa0416840:CDS |
| ACTAGAGGACACTCTTCATC+AGG | 0.491260 | 3_2:-63888660 | None:intergenic |
| ATTATTGTGAACCTCAAGAA+AGG | 0.496990 | 3_2:+63889060 | Msa0416840:three_prime_UTR |
| AAATATGGTTGGCTCTTGGC+AGG | 0.497385 | 3_2:+63888873 | Msa0416840:CDS |
| TGTTTCACTTTCTGTTGCAA+AGG | 0.498388 | 3_2:+63888336 | Msa0416840:CDS |
| TTACAAAATCACCTTTCTTG+AGG | 0.504113 | 3_2:-63889071 | None:intergenic |
| AAAGCCTCACGAACATTCTC+AGG | 0.505756 | 3_2:-63888906 | None:intergenic |
| TCAAAAGTTGCAAGAGATTG+TGG | 0.507409 | 3_2:+63888364 | Msa0416840:CDS |
| GAGTCGATTGAGGTTGAGAC+GGG | 0.511237 | 3_2:+63885782 | Msa0416840:CDS |
| TAGATAGTGCAAAGGGTGGC+AGG | 0.516369 | 3_2:+63888697 | Msa0416840:CDS |
| AGAGCCTGTTGGAGTATTTG+TGG | 0.521575 | 3_2:+63888390 | Msa0416840:CDS |
| ACGGGCTTTGCGACGAAAGT+GGG | 0.522925 | 3_2:+63885800 | Msa0416840:CDS |
| ATCAAATCTTGAGTTTGTGC+AGG | 0.523243 | 3_2:+63888450 | Msa0416840:CDS |
| AAGACTAGACTACCTGGAAT+CGG | 0.524029 | 3_2:-63887835 | None:intergenic |
| AAATGTTTCATGTTCATCAA+AGG | 0.525170 | 3_2:+63888189 | Msa0416840:CDS |
| ATCAGCTAAAGATGCTGCTA+TGG | 0.526392 | 3_2:+63888255 | Msa0416840:CDS |
| GCTTCATGGATCTGGTTCGC+GGG | 0.535795 | 3_2:+63888554 | Msa0416840:intron |
| GCATGAGAATATTGTAATGC+TGG | 0.542730 | 3_2:+63889169 | Msa0416840:three_prime_UTR |
| GACGGGCTTTGCGACGAAAG+TGG | 0.546152 | 3_2:+63885799 | Msa0416840:CDS |
| GGCTCCCATCAGCATTTGCA+TGG | 0.555209 | 3_2:-63888623 | None:intergenic |
| CTACTGACATCCACTCCTCC+AGG | 0.559568 | 3_2:-63888942 | None:intergenic |
| GTTCTCCATGCAAATGCTGA+TGG | 0.559769 | 3_2:+63888618 | Msa0416840:CDS |
| AAATTAGAAGCAAATATGGT+TGG | 0.569037 | 3_2:+63888862 | Msa0416840:CDS |
| TAGTCTCAAACCTGGAGGAG+TGG | 0.574489 | 3_2:+63888932 | Msa0416840:CDS |
| AAACCTTTGGTTAAGATGTG+TGG | 0.574556 | 3_2:+63888226 | Msa0416840:intron |
| GATTGTGGAGCAGAGCCTGT+TGG | 0.580954 | 3_2:+63888379 | Msa0416840:CDS |
| GACGAAAGTGGGCTCTGTAG+TGG | 0.582345 | 3_2:+63885811 | Msa0416840:CDS |
| AACAGAGTTAGAGTCGATTG+AGG | 0.589202 | 3_2:+63885772 | Msa0416840:CDS |
| ATGGTTGGCTCTTGGCAGGA+GGG | 0.589722 | 3_2:+63888877 | Msa0416840:CDS |
| TTTGTACAGGTTCAACAACT+GGG | 0.593913 | 3_2:+63887773 | Msa0416840:intron |
| AGAGTCGATTGAGGTTGAGA+CGG | 0.598456 | 3_2:+63885781 | Msa0416840:CDS |
| AGAATGTACTGCATCCATGA+AGG | 0.601091 | 3_2:-63889015 | None:intergenic |
| ACTTTATTGGTATGATCGTG+TGG | 0.601436 | 3_2:+63888296 | Msa0416840:CDS |
| TGCATCAGATGGCATTCAGA+AGG | 0.604378 | 3_2:+63888974 | Msa0416840:CDS |
| TATGGTTGGCTCTTGGCAGG+AGG | 0.607292 | 3_2:+63888876 | Msa0416840:CDS |
| TTCTCCATGCAAATGCTGAT+GGG | 0.608881 | 3_2:+63888619 | Msa0416840:CDS |
| AATTAGACCAAGTTCTGTCG+TGG | 0.609405 | 3_2:+63885749 | None:intergenic |
| GTTCTGGTAGATAGTGCAAA+GGG | 0.610316 | 3_2:+63888690 | Msa0416840:CDS |
| AGCGGCATATGTGCATCAGA+TGG | 0.611930 | 3_2:+63888963 | Msa0416840:CDS |
| AGCTAAAGATGCTGCTATGG+CGG | 0.622801 | 3_2:+63888258 | Msa0416840:CDS |
| GCTTTGTCTAGTCTCAAACC+TGG | 0.631502 | 3_2:+63888924 | Msa0416840:CDS |
| GGTTCTGGTAGATAGTGCAA+AGG | 0.632272 | 3_2:+63888689 | Msa0416840:CDS |
| ACCAGAACCCAATCAACTAG+AGG | 0.654201 | 3_2:-63888675 | None:intergenic |
| CAATCCTGAGAATGTTCGTG+AGG | 0.659098 | 3_2:+63888902 | Msa0416840:CDS |
| GGAGGAGTGGATGTCAGTAG+CGG | 0.679932 | 3_2:+63888945 | Msa0416840:CDS |
| CTGGTAGATAGTGCAAAGGG+TGG | 0.687302 | 3_2:+63888693 | Msa0416840:CDS |
| TTGTCTAGTCTCAAACCTGG+AGG | 0.687383 | 3_2:+63888927 | Msa0416840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTATGTTATTATTAT+TGG | + | chr3_2:63887675-63887694 | Msa0416840:intron | 10.0% |
| !!! | CATTTAAATATAATTTTTGT+AGG | + | chr3_2:63888085-63888104 | Msa0416840:intron | 10.0% |
| !! | AATTAAGAGAAATTATTTAC+TGG | + | chr3_2:63886031-63886050 | Msa0416840:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAA+CGG | - | chr3_2:63886141-63886160 | None:intergenic | 15.0% |
| !!! | AATTTTTGGTAATTTAAACT+GGG | - | chr3_2:63888847-63888866 | None:intergenic | 15.0% |
| !!! | TAATTTTTGGTAATTTAAAC+TGG | - | chr3_2:63888848-63888867 | None:intergenic | 15.0% |
| !!! | AATTATTTGTTAATGCAGTT+AGG | - | chr3_2:63886579-63886598 | None:intergenic | 20.0% |
| !! | ATAGTCATAATAAAAGCAAT+TGG | - | chr3_2:63886975-63886994 | None:intergenic | 20.0% |
| !!! | AAAGATTAGTTAATGCATTT+AGG | - | chr3_2:63887624-63887643 | None:intergenic | 20.0% |
| !! | TTGAAGAACATAAAAATTCA+TGG | - | chr3_2:63887704-63887723 | None:intergenic | 20.0% |
| ! | CAAATCATAGTGATTATCAT+TGG | - | chr3_2:63886343-63886362 | None:intergenic | 25.0% |
| !! | TGATAATCACTATGATTTGT+AGG | + | chr3_2:63886344-63886363 | Msa0416840:intron | 25.0% |
| ! | AAACTGAATAGAACAAACTT+GGG | - | chr3_2:63886381-63886400 | None:intergenic | 25.0% |
| ! | AAAACTGAATAGAACAAACT+TGG | - | chr3_2:63886382-63886401 | None:intergenic | 25.0% |
| ! | TGTATAAAGCATAAACTCAA+TGG | - | chr3_2:63887302-63887321 | None:intergenic | 25.0% |
| ! | GCTTTATACACATAATTATG+AGG | + | chr3_2:63887312-63887331 | Msa0416840:intron | 25.0% |
| ! | TCTTGATTAGGATATCTTTA+TGG | - | chr3_2:63887499-63887518 | None:intergenic | 25.0% |
| !! | AAAAGAAAACATAACTTGCA+AGG | - | chr3_2:63887755-63887774 | None:intergenic | 25.0% |
| !! | GTTATGTTTTCTTTTTGTAC+AGG | + | chr3_2:63887760-63887779 | Msa0416840:intron | 25.0% |
| !! | ATAATTTTTGTAGGTTTGAG+AGG | + | chr3_2:63888094-63888113 | Msa0416840:intron | 25.0% |
| ! | AAATGTTTCATGTTCATCAA+AGG | + | chr3_2:63888189-63888208 | Msa0416840:CDS | 25.0% |
| !! | CCATATTTGCTTCTAATTTT+TGG | - | chr3_2:63888861-63888880 | None:intergenic | 25.0% |
| ! | CCAAAAATTAGAAGCAAATA+TGG | + | chr3_2:63888858-63888877 | Msa0416840:CDS | 25.0% |
| ! | AAATTAGAAGCAAATATGGT+TGG | + | chr3_2:63888862-63888881 | Msa0416840:CDS | 25.0% |
| ! | TTGAGGTTCACAATAATTTA+AGG | - | chr3_2:63889057-63889076 | None:intergenic | 25.0% |
| !! | AAATGGACTTGAAAACAAAA+TGG | - | chr3_2:63889110-63889129 | None:intergenic | 25.0% |
| ! | TCTAAAGAAGAAAGAACTTT+GGG | - | chr3_2:63889138-63889157 | None:intergenic | 25.0% |
| TGAAATTCATCAAACAAGTG+AGG | - | chr3_2:63885932-63885951 | None:intergenic | 30.0% | |
| TTGAATGTAATCACATGTGT+TGG | + | chr3_2:63886166-63886185 | Msa0416840:intron | 30.0% | |
| ! | TTATCATTGGCTGAAATGAA+GGG | - | chr3_2:63886330-63886349 | None:intergenic | 30.0% |
| ! | ATTATCATTGGCTGAAATGA+AGG | - | chr3_2:63886331-63886350 | None:intergenic | 30.0% |
| AACTGAATAGAACAAACTTG+GGG | - | chr3_2:63886380-63886399 | None:intergenic | 30.0% | |
| TTGTTAATGCAGTTAGGATA+CGG | - | chr3_2:63886573-63886592 | None:intergenic | 30.0% | |
| GATAATTCAACAACAGATTG+CGG | - | chr3_2:63886763-63886782 | None:intergenic | 30.0% | |
| ! | ATTTTCCTCGGAAGAAAATA+TGG | - | chr3_2:63887002-63887021 | None:intergenic | 30.0% |
| CACTTTAAGCTACTTGATAT+TGG | + | chr3_2:63887110-63887129 | Msa0416840:intron | 30.0% | |
| AAGATTAACTTCTGGTATCA+TGG | - | chr3_2:63887239-63887258 | None:intergenic | 30.0% | |
| ! | AAGCATTAGCTTACAATAAG+AGG | - | chr3_2:63887371-63887390 | None:intergenic | 30.0% |
| TGATTTCCATGCTAAGAAAT+TGG | + | chr3_2:63887390-63887409 | Msa0416840:intron | 30.0% | |
| AGCTCATTCTTGTTCAAATT+CGG | - | chr3_2:63887421-63887440 | None:intergenic | 30.0% | |
| TTTGAACAAGAATGAGCTTA+AGG | + | chr3_2:63887423-63887442 | Msa0416840:intron | 30.0% | |
| TAGTTAATGCATTTAGGAGT+CGG | - | chr3_2:63887618-63887637 | None:intergenic | 30.0% | |
| CACAAGAACAATAATGTACA+TGG | - | chr3_2:63887731-63887750 | None:intergenic | 30.0% | |
| TAAATAAAGACTAGACTACC+TGG | - | chr3_2:63887844-63887863 | None:intergenic | 30.0% | |
| ! | TGGTATATGTCTCAATTTTC+AGG | + | chr3_2:63887885-63887904 | Msa0416840:intron | 30.0% |
| !! | TGTATTGTTTGAAAGCATCA+TGG | + | chr3_2:63887959-63887978 | Msa0416840:intron | 30.0% |
| GCATCAAATTTCTAAGTACA+AGG | + | chr3_2:63888050-63888069 | Msa0416840:intron | 30.0% | |
| !! | CCATTTTCTAGCATAAGATT+CGG | + | chr3_2:63888127-63888146 | Msa0416840:CDS | 30.0% |
| TTGCAGGAAATTTCATACTT+TGG | - | chr3_2:63888154-63888173 | None:intergenic | 30.0% | |
| ACTTGAAAAGAGTAAACCTT+TGG | + | chr3_2:63888213-63888232 | Msa0416840:CDS | 30.0% | |
| ! | GATTTTCCTGAATCAAAGAT+GGG | - | chr3_2:63888587-63888606 | None:intergenic | 30.0% |
| CATCAGGAATTGTGTTTAAA+AGG | - | chr3_2:63888647-63888666 | None:intergenic | 30.0% | |
| !!! | AATGTTTTAGAACTCATGAG+AGG | + | chr3_2:63888792-63888811 | Msa0416840:intron | 30.0% |
| ATTATTGTGAACCTCAAGAA+AGG | + | chr3_2:63889060-63889079 | Msa0416840:three_prime_UTR | 30.0% | |
| TTACAAAATCACCTTTCTTG+AGG | - | chr3_2:63889074-63889093 | None:intergenic | 30.0% | |
| ! | AAGAACTTTGGGAATACAAA+TGG | - | chr3_2:63889127-63889146 | None:intergenic | 30.0% |
| GTCTAAAGAAGAAAGAACTT+TGG | - | chr3_2:63889139-63889158 | None:intergenic | 30.0% | |
| !!! | TCTTCTTTAGACTGCTTTTT+AGG | + | chr3_2:63889147-63889166 | Msa0416840:three_prime_UTR | 30.0% |
| CTGAGAACATTGTGAAACTT+TGG | - | chr3_2:63885846-63885865 | None:intergenic | 35.0% | |
| CAAAGTTTCACAATGTTCTC+AGG | + | chr3_2:63885844-63885863 | Msa0416840:intron | 35.0% | |
| CGCGAAGAGTAAAATGAAAT+GGG | - | chr3_2:63885882-63885901 | None:intergenic | 35.0% | |
| CACAATAAACAATTGCTCAG+GGG | - | chr3_2:63886296-63886315 | None:intergenic | 35.0% | |
| GCACAATAAACAATTGCTCA+GGG | - | chr3_2:63886297-63886316 | None:intergenic | 35.0% | |
| AGCACAATAAACAATTGCTC+AGG | - | chr3_2:63886298-63886317 | None:intergenic | 35.0% | |
| ! | GCAGAGCTATTTCACTATAA+AGG | - | chr3_2:63886431-63886450 | None:intergenic | 35.0% |
| AAGACAGACACTACGATATT+AGG | - | chr3_2:63886453-63886472 | None:intergenic | 35.0% | |
| TCAGGAGCTATTAATGTGAA+GGG | - | chr3_2:63886613-63886632 | None:intergenic | 35.0% | |
| !! | TAACCTCTTTGAGATTGACT+CGG | + | chr3_2:63886663-63886682 | Msa0416840:intron | 35.0% |
| ! | TTTTGTCGCAAGTGAAGTAT+GGG | + | chr3_2:63886817-63886836 | Msa0416840:intron | 35.0% |
| TGTTATCACGCTAGACATTT+AGG | + | chr3_2:63886866-63886885 | Msa0416840:intron | 35.0% | |
| GTTATCACGCTAGACATTTA+GGG | + | chr3_2:63886867-63886886 | Msa0416840:intron | 35.0% | |
| TTATCACGCTAGACATTTAG+GGG | + | chr3_2:63886868-63886887 | Msa0416840:intron | 35.0% | |
| !! | TATTTCCAGATCTAGCTTTG+AGG | - | chr3_2:63886951-63886970 | None:intergenic | 35.0% |
| GTAAATAGAAGGTTAACTGC+AGG | - | chr3_2:63887032-63887051 | None:intergenic | 35.0% | |
| TGCGTATTGTGATTTAACTG+GGG | - | chr3_2:63887064-63887083 | None:intergenic | 35.0% | |
| GTGCGTATTGTGATTTAACT+GGG | - | chr3_2:63887065-63887084 | None:intergenic | 35.0% | |
| CTCAAGGATGTGAAGAAAAT+TGG | - | chr3_2:63887087-63887106 | None:intergenic | 35.0% | |
| !! | AAGCTACTTGATATTGGCTT+TGG | + | chr3_2:63887116-63887135 | Msa0416840:intron | 35.0% |
| !! | AGCTACTTGATATTGGCTTT+GGG | + | chr3_2:63887117-63887136 | Msa0416840:intron | 35.0% |
| GTGATCATGCGTATCAAATT+CGG | - | chr3_2:63887173-63887192 | None:intergenic | 35.0% | |
| TCTCTCTTCTTCTCTTGATT+AGG | - | chr3_2:63887511-63887530 | None:intergenic | 35.0% | |
| AGAGAAGAAGAGAGAATTTG+TGG | + | chr3_2:63887516-63887535 | Msa0416840:intron | 35.0% | |
| GTAATGTTTACCAAGCACAT+TGG | - | chr3_2:63887546-63887565 | None:intergenic | 35.0% | |
| ACAGATCTGAGTGAGATATA+TGG | + | chr3_2:63887564-63887583 | Msa0416840:intron | 35.0% | |
| CTAAGTAGCTACATGAATTG+TGG | - | chr3_2:63887655-63887674 | None:intergenic | 35.0% | |
| ! | TTTTGTACAGGTTCAACAAC+TGG | + | chr3_2:63887772-63887791 | Msa0416840:intron | 35.0% |
| TTTGTACAGGTTCAACAACT+GGG | + | chr3_2:63887773-63887792 | Msa0416840:intron | 35.0% | |
| TGAGTATATTGTCTCTCTTC+TGG | + | chr3_2:63887865-63887884 | Msa0416840:intron | 35.0% | |
| AAACCTACATGAGGAATAAG+TGG | - | chr3_2:63887922-63887941 | None:intergenic | 35.0% | |
| CATGAAACTAAACCTACATG+AGG | - | chr3_2:63887931-63887950 | None:intergenic | 35.0% | |
| CGAGGCTTTCATTTAAATAG+TGG | - | chr3_2:63888009-63888028 | None:intergenic | 35.0% | |
| TTTAAATGAAAGCCTCGTGA+AGG | + | chr3_2:63888012-63888031 | Msa0416840:intron | 35.0% | |
| TTAAATGAAAGCCTCGTGAA+GGG | + | chr3_2:63888013-63888032 | Msa0416840:intron | 35.0% | |
| CCGAATCTTATGCTAGAAAA+TGG | - | chr3_2:63888130-63888149 | None:intergenic | 35.0% | |
| TTCCTGCAAACTTAATGAGT+TGG | + | chr3_2:63888165-63888184 | Msa0416840:CDS | 35.0% | |
| AAACCTTTGGTTAAGATGTG+TGG | + | chr3_2:63888226-63888245 | Msa0416840:intron | 35.0% | |
| ! | AATAAAGTTTGCTCCAGCTT+CGG | - | chr3_2:63888284-63888303 | None:intergenic | 35.0% |
| ACTTTATTGGTATGATCGTG+TGG | + | chr3_2:63888296-63888315 | Msa0416840:CDS | 35.0% | |
| !!! | GAAACAGAACGTTTTGAGTT+TGG | - | chr3_2:63888322-63888341 | None:intergenic | 35.0% |
| TGTTTCACTTTCTGTTGCAA+AGG | + | chr3_2:63888336-63888355 | Msa0416840:CDS | 35.0% | |
| TCAAAAGTTGCAAGAGATTG+TGG | + | chr3_2:63888364-63888383 | Msa0416840:CDS | 35.0% | |
| ATCAAATCTTGAGTTTGTGC+AGG | + | chr3_2:63888450-63888469 | Msa0416840:CDS | 35.0% | |
| GTTGAACATGCATAAAAGTC+AGG | - | chr3_2:63888486-63888505 | None:intergenic | 35.0% | |
| TTCAACGACAGTTAAATGCT+TGG | + | chr3_2:63888500-63888519 | Msa0416840:intron | 35.0% | |
| ! | CGATTTTCCTGAATCAAAGA+TGG | - | chr3_2:63888588-63888607 | None:intergenic | 35.0% |
| ATCAAGAATAGCTTCCTTCA+TGG | + | chr3_2:63889001-63889020 | Msa0416840:CDS | 35.0% | |
| GCATGAGAATATTGTAATGC+TGG | + | chr3_2:63889169-63889188 | Msa0416840:three_prime_UTR | 35.0% | |
| GCTGGCTGATATATCATATA+TGG | + | chr3_2:63889187-63889206 | Msa0416840:three_prime_UTR | 35.0% | |
| AACAGAGTTAGAGTCGATTG+AGG | + | chr3_2:63885772-63885791 | Msa0416840:CDS | 40.0% | |
| GCGCGAAGAGTAAAATGAAA+TGG | - | chr3_2:63885883-63885902 | None:intergenic | 40.0% | |
| ATTTCGTTATCGACAGGAGT+CGG | - | chr3_2:63886201-63886220 | None:intergenic | 40.0% | |
| ! | AAGGCTATTTCGTTATCGAC+AGG | - | chr3_2:63886207-63886226 | None:intergenic | 40.0% |
| GTCAGGAGCTATTAATGTGA+AGG | - | chr3_2:63886614-63886633 | None:intergenic | 40.0% | |
| ACTTCACCAACTTGATCTTG+AGG | - | chr3_2:63886643-63886662 | None:intergenic | 40.0% | |
| TATCCGAGTCAATCTCAAAG+AGG | - | chr3_2:63886669-63886688 | None:intergenic | 40.0% | |
| TTCACTTGCGACAAAACAGT+TGG | - | chr3_2:63886813-63886832 | None:intergenic | 40.0% | |
| ! | GTTTTGTCGCAAGTGAAGTA+TGG | + | chr3_2:63886816-63886835 | Msa0416840:intron | 40.0% |
| TTTGTCGCAAGTGAAGTATG+GGG | + | chr3_2:63886818-63886837 | Msa0416840:intron | 40.0% | |
| TTCCTCGGAAGAAAATATGG+TGG | - | chr3_2:63886999-63887018 | None:intergenic | 40.0% | |
| !! | GCAGGCTATTTCATTTTCCT+CGG | - | chr3_2:63887014-63887033 | None:intergenic | 40.0% |
| GGCTTATGCAGGTAAATAGA+AGG | - | chr3_2:63887043-63887062 | None:intergenic | 40.0% | |
| GGTGCGTATTGTGATTTAAC+TGG | - | chr3_2:63887066-63887085 | None:intergenic | 40.0% | |
| GTAGCTTAAAGTGCAACTCA+AGG | - | chr3_2:63887103-63887122 | None:intergenic | 40.0% | |
| !! | GATATTGGCTTTGGGTTAAG+AGG | + | chr3_2:63887125-63887144 | Msa0416840:intron | 40.0% |
| TATCAAATTCGGCAGAAGCT+AGG | - | chr3_2:63887162-63887181 | None:intergenic | 40.0% | |
| GGATCAGCAAGATTAACTTC+TGG | - | chr3_2:63887247-63887266 | None:intergenic | 40.0% | |
| ! | TGAGGAACTGCATTTTCACT+TGG | + | chr3_2:63887330-63887349 | Msa0416840:intron | 40.0% |
| GTGAAGCCAATTTCTTAGCA+TGG | - | chr3_2:63887399-63887418 | None:intergenic | 40.0% | |
| ATAGCTTCAGCCTCTATTGA+GGG | + | chr3_2:63887451-63887470 | Msa0416840:intron | 40.0% | |
| TTGTGGTAAACCAATGTGCT+TGG | + | chr3_2:63887533-63887552 | Msa0416840:intron | 40.0% | |
| TTCAACAACTGGGAGTTACT+TGG | + | chr3_2:63887783-63887802 | Msa0416840:CDS | 40.0% | |
| AAGACTAGACTACCTGGAAT+CGG | - | chr3_2:63887838-63887857 | None:intergenic | 40.0% | |
| GTACCACTTATTCCTCATGT+AGG | + | chr3_2:63887916-63887935 | Msa0416840:intron | 40.0% | |
| TGCCAACTCATTAAGTTTGC+AGG | - | chr3_2:63888170-63888189 | None:intergenic | 40.0% | |
| ATGCCACACATCTTAACCAA+AGG | - | chr3_2:63888232-63888251 | None:intergenic | 40.0% | |
| ATCAGCTAAAGATGCTGCTA+TGG | + | chr3_2:63888255-63888274 | Msa0416840:CDS | 40.0% | |
| GAAGCTGGAGCAAACTTTAT+TGG | + | chr3_2:63888283-63888302 | Msa0416840:CDS | 40.0% | |
| TCATCCACAAATACTCCAAC+AGG | - | chr3_2:63888397-63888416 | None:intergenic | 40.0% | |
| GTTTGAACAATGCAGCTTCA+TGG | + | chr3_2:63888540-63888559 | Msa0416840:intron | 40.0% | |
| AGCTTTCCCATCTTTGATTC+AGG | + | chr3_2:63888578-63888597 | Msa0416840:CDS | 40.0% | |
| TTCTCCATGCAAATGCTGAT+GGG | + | chr3_2:63888619-63888638 | Msa0416840:CDS | 40.0% | |
| !! | AAGAGTGTCCTCTAGTTGAT+TGG | + | chr3_2:63888667-63888686 | Msa0416840:CDS | 40.0% |
| ! | AGAGTGTCCTCTAGTTGATT+GGG | + | chr3_2:63888668-63888687 | Msa0416840:CDS | 40.0% |
| GTTCTGGTAGATAGTGCAAA+GGG | + | chr3_2:63888690-63888709 | Msa0416840:CDS | 40.0% | |
| ! | AAGCAAATATGGTTGGCTCT+TGG | + | chr3_2:63888869-63888888 | Msa0416840:CDS | 40.0% |
| AGAATGTACTGCATCCATGA+AGG | - | chr3_2:63889018-63889037 | None:intergenic | 40.0% | |
| AGAGTCGATTGAGGTTGAGA+CGG | + | chr3_2:63885781-63885800 | Msa0416840:CDS | 45.0% | |
| AAGTGAGGTGCACTACTTTC+AGG | - | chr3_2:63885917-63885936 | None:intergenic | 45.0% | |
| TAGCCTTCGATCAGAAATGC+TGG | + | chr3_2:63886220-63886239 | Msa0416840:intron | 45.0% | |
| ACACCAGCATTTCTGATCGA+AGG | - | chr3_2:63886226-63886245 | None:intergenic | 45.0% | |
| TCTCCACCTCAAGATCAAGT+TGG | + | chr3_2:63886634-63886653 | Msa0416840:intron | 45.0% | |
| TCACCAACTTGATCTTGAGG+TGG | - | chr3_2:63886640-63886659 | None:intergenic | 45.0% | |
| ! | GGTTTTGCAGCTAGAACACA+AGG | + | chr3_2:63886889-63886908 | Msa0416840:intron | 45.0% |
| CTTTGCCTCAAAGCTAGATC+TGG | + | chr3_2:63886943-63886962 | Msa0416840:intron | 45.0% | |
| ! | TGCCACCATATTTTCTTCCG+AGG | + | chr3_2:63886994-63887013 | Msa0416840:intron | 45.0% |
| GATTTAACTGGGGCTTATGC+AGG | - | chr3_2:63887054-63887073 | None:intergenic | 45.0% | |
| CTCTCACTGTTTCCATGGTA+AGG | - | chr3_2:63887197-63887216 | None:intergenic | 45.0% | |
| CTTACCATGGAAACAGTGAG+AGG | + | chr3_2:63887195-63887214 | Msa0416840:intron | 45.0% | |
| AGAACCTCTCACTGTTTCCA+TGG | - | chr3_2:63887202-63887221 | None:intergenic | 45.0% | |
| ATGGAAACAGTGAGAGGTTC+TGG | + | chr3_2:63887201-63887220 | Msa0416840:intron | 45.0% | |
| TAGTTTCGTGTAGCTCAGCT+GGG | - | chr3_2:63887273-63887292 | None:intergenic | 45.0% | |
| TTAGTTTCGTGTAGCTCAGC+TGG | - | chr3_2:63887274-63887293 | None:intergenic | 45.0% | |
| ! | GCATTTTCACTTGGCGAAGA+AGG | + | chr3_2:63887339-63887358 | Msa0416840:intron | 45.0% |
| CATAGCTTCAGCCTCTATTG+AGG | + | chr3_2:63887450-63887469 | Msa0416840:intron | 45.0% | |
| AGAGTTCAGACCCTCAATAG+AGG | - | chr3_2:63887464-63887483 | None:intergenic | 45.0% | |
| ! | TTCCACAAAAGACCGATTCC+AGG | + | chr3_2:63887823-63887842 | Msa0416840:CDS | 45.0% |
| ! | TACCTGGAATCGGTCTTTTG+TGG | - | chr3_2:63887828-63887847 | None:intergenic | 45.0% |
| AGCTAAAGATGCTGCTATGG+CGG | + | chr3_2:63888258-63888277 | Msa0416840:CDS | 45.0% | |
| ! | AGAGCCTGTTGGAGTATTTG+TGG | + | chr3_2:63888390-63888409 | Msa0416840:CDS | 45.0% |
| ACAATGCAGCTTCATGGATC+TGG | + | chr3_2:63888546-63888565 | Msa0416840:intron | 45.0% | |
| GTTCTCCATGCAAATGCTGA+TGG | + | chr3_2:63888618-63888637 | Msa0416840:CDS | 45.0% | |
| ACTAGAGGACACTCTTCATC+AGG | - | chr3_2:63888663-63888682 | None:intergenic | 45.0% | |
| TCCTCTAGTTGATTGGGTTC+TGG | + | chr3_2:63888674-63888693 | Msa0416840:CDS | 45.0% | |
| ACCAGAACCCAATCAACTAG+AGG | - | chr3_2:63888678-63888697 | None:intergenic | 45.0% | |
| ! | GGTTCTGGTAGATAGTGCAA+AGG | + | chr3_2:63888689-63888708 | Msa0416840:CDS | 45.0% |
| TCATGAGAGGTCTTTGCAGT+GGG | + | chr3_2:63888805-63888824 | Msa0416840:intron | 45.0% | |
| !! | CAGTGGGGAAGCATTTGATT+GGG | + | chr3_2:63888821-63888840 | Msa0416840:intron | 45.0% |
| ! | AAATATGGTTGGCTCTTGGC+AGG | + | chr3_2:63888873-63888892 | Msa0416840:CDS | 45.0% |
| CAATCCTGAGAATGTTCGTG+AGG | + | chr3_2:63888902-63888921 | Msa0416840:CDS | 45.0% | |
| AAAGCCTCACGAACATTCTC+AGG | - | chr3_2:63888909-63888928 | None:intergenic | 45.0% | |
| GCTTTGTCTAGTCTCAAACC+TGG | + | chr3_2:63888924-63888943 | Msa0416840:CDS | 45.0% | |
| TTGTCTAGTCTCAAACCTGG+AGG | + | chr3_2:63888927-63888946 | Msa0416840:CDS | 45.0% | |
| TGCATCAGATGGCATTCAGA+AGG | + | chr3_2:63888974-63888993 | Msa0416840:CDS | 45.0% | |
| !! | TTATAATTAAAAAAAATAGT+TGG | - | chr3_2:63886532-63886551 | None:intergenic | 5.0% |
| CTCTGTTCCACGACAGAACT+TGG | - | chr3_2:63885759-63885778 | None:intergenic | 50.0% | |
| GAGTCGATTGAGGTTGAGAC+GGG | + | chr3_2:63885782-63885801 | Msa0416840:CDS | 50.0% | |
| TAAGTGTCTCGTGTCTGCGT+CGG | - | chr3_2:63886108-63886127 | None:intergenic | 50.0% | |
| TGATCTTGAGGTGGAGAGTC+AGG | - | chr3_2:63886631-63886650 | None:intergenic | 50.0% | |
| !! | TGGCTTTGGGTTAAGAGGCA+AGG | + | chr3_2:63887130-63887149 | Msa0416840:intron | 50.0% |
| CGCATGATCACACCTTACCA+TGG | + | chr3_2:63887182-63887201 | Msa0416840:intron | 50.0% | |
| ! | CGGTCTTTTGTGGAAGTTCG+TGG | - | chr3_2:63887818-63887837 | None:intergenic | 50.0% |
| TTTCCTCTCATCCCTTCACG+AGG | - | chr3_2:63888027-63888046 | None:intergenic | 50.0% | |
| ! | AGCTTCATGGATCTGGTTCG+CGG | + | chr3_2:63888553-63888572 | Msa0416840:intron | 50.0% |
| CTGGTAGATAGTGCAAAGGG+TGG | + | chr3_2:63888693-63888712 | Msa0416840:CDS | 50.0% | |
| TAGATAGTGCAAAGGGTGGC+AGG | + | chr3_2:63888697-63888716 | Msa0416840:CDS | 50.0% | |
| CTCATGAGAGGTCTTTGCAG+TGG | + | chr3_2:63888804-63888823 | Msa0416840:intron | 50.0% | |
| CATGAGAGGTCTTTGCAGTG+GGG | + | chr3_2:63888806-63888825 | Msa0416840:intron | 50.0% | |
| !! | GCAGTGGGGAAGCATTTGAT+TGG | + | chr3_2:63888820-63888839 | Msa0416840:intron | 50.0% |
| TAGTCTCAAACCTGGAGGAG+TGG | + | chr3_2:63888932-63888951 | Msa0416840:CDS | 50.0% | |
| AGCGGCATATGTGCATCAGA+TGG | + | chr3_2:63888963-63888982 | Msa0416840:CDS | 50.0% | |
| ACGGGCTTTGCGACGAAAGT+GGG | + | chr3_2:63885800-63885819 | Msa0416840:CDS | 55.0% | |
| ! | GACGAAAGTGGGCTCTGTAG+TGG | + | chr3_2:63885811-63885830 | Msa0416840:CDS | 55.0% |
| TCGTGTAGCTCAGCTGGGAT+GGG | - | chr3_2:63887268-63887287 | None:intergenic | 55.0% | |
| TTCGTGTAGCTCAGCTGGGA+TGG | - | chr3_2:63887269-63887288 | None:intergenic | 55.0% | |
| AAGCCTCGTGAAGGGATGAG+AGG | + | chr3_2:63888021-63888040 | Msa0416840:intron | 55.0% | |
| GATTGTGGAGCAGAGCCTGT+TGG | + | chr3_2:63888379-63888398 | Msa0416840:CDS | 55.0% | |
| ! | GCTTCATGGATCTGGTTCGC+GGG | + | chr3_2:63888554-63888573 | Msa0416840:intron | 55.0% |
| GGCTCCCATCAGCATTTGCA+TGG | - | chr3_2:63888626-63888645 | None:intergenic | 55.0% | |
| AGGGTGGCAGGTAAAGACGT+AGG | + | chr3_2:63888709-63888728 | Msa0416840:intron | 55.0% | |
| ! | TATGGTTGGCTCTTGGCAGG+AGG | + | chr3_2:63888876-63888895 | Msa0416840:CDS | 55.0% |
| ! | ATGGTTGGCTCTTGGCAGGA+GGG | + | chr3_2:63888877-63888896 | Msa0416840:CDS | 55.0% |
| CTACTGACATCCACTCCTCC+AGG | - | chr3_2:63888945-63888964 | None:intergenic | 55.0% | |
| GGAGGAGTGGATGTCAGTAG+CGG | + | chr3_2:63888945-63888964 | Msa0416840:CDS | 55.0% | |
| ! | GACGGGCTTTGCGACGAAAG+TGG | + | chr3_2:63885799-63885818 | Msa0416840:CDS | 60.0% |
| GCTGCTATGGCGGCCGAAGC+TGG | + | chr3_2:63888268-63888287 | Msa0416840:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 63885755 | 63889246 | 63885755 | ID=Msa0416840;Name=Msa0416840 |
| chr3_2 | mRNA | 63885755 | 63889246 | 63885755 | ID=Msa0416840-mRNA-1;Parent=Msa0416840;Name=Msa0416840-mRNA-1;_AED=0.11;_eAED=0.16;_QI=0|0.6|0.5|1|0.6|0.5|6|197|297 |
| chr3_2 | exon | 63885755 | 63885836 | 63885755 | ID=Msa0416840-mRNA-1:exon:13989;Parent=Msa0416840-mRNA-1 |
| chr3_2 | exon | 63887782 | 63887844 | 63887782 | ID=Msa0416840-mRNA-1:exon:13990;Parent=Msa0416840-mRNA-1 |
| chr3_2 | exon | 63888107 | 63888234 | 63888107 | ID=Msa0416840-mRNA-1:exon:13991;Parent=Msa0416840-mRNA-1 |
| chr3_2 | exon | 63888241 | 63888471 | 63888241 | ID=Msa0416840-mRNA-1:exon:13992;Parent=Msa0416840-mRNA-1 |
| chr3_2 | exon | 63888555 | 63888718 | 63888555 | ID=Msa0416840-mRNA-1:exon:13993;Parent=Msa0416840-mRNA-1 |
| chr3_2 | exon | 63888824 | 63889246 | 63888824 | ID=Msa0416840-mRNA-1:exon:13994;Parent=Msa0416840-mRNA-1 |
| chr3_2 | CDS | 63885755 | 63885836 | 63885755 | ID=Msa0416840-mRNA-1:cds;Parent=Msa0416840-mRNA-1 |
| chr3_2 | CDS | 63887782 | 63887844 | 63887782 | ID=Msa0416840-mRNA-1:cds;Parent=Msa0416840-mRNA-1 |
| chr3_2 | CDS | 63888107 | 63888234 | 63888107 | ID=Msa0416840-mRNA-1:cds;Parent=Msa0416840-mRNA-1 |
| chr3_2 | CDS | 63888241 | 63888471 | 63888241 | ID=Msa0416840-mRNA-1:cds;Parent=Msa0416840-mRNA-1 |
| chr3_2 | CDS | 63888555 | 63888718 | 63888555 | ID=Msa0416840-mRNA-1:cds;Parent=Msa0416840-mRNA-1 |
| chr3_2 | CDS | 63888824 | 63889049 | 63888824 | ID=Msa0416840-mRNA-1:cds;Parent=Msa0416840-mRNA-1 |
| chr3_2 | three_prime_UTR | 63889050 | 63889246 | 63889050 | ID=Msa0416840-mRNA-1:three_prime_utr;Parent=Msa0416840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
