Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0369380 | XP_003600920.2 | 96.364 | 275 | 8 | 1 | 1 | 273 | 1 | 275 | 0.0 | 537 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0369380 | sp|Q42440|PAI1_ARATH | 61.091 | 275 | 105 | 1 | 1 | 273 | 1 | 275 | 1.11e-120 | 348 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0369380 | G7JBT1 | 96.364 | 275 | 8 | 1 | 1 | 273 | 1 | 275 | 0.0 | 537 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0046750 | Msa0369380 | 0.800144 | 1.654042e-48 | -8.615850e-47 |
Msa0369380 | Msa0376510 | 0.803982 | 2.687326e-49 | -8.615850e-47 |
Msa0369380 | Msa0392070 | 0.803017 | 4.260050e-49 | -8.615850e-47 |
Msa0369380 | Msa0416840 | 0.872239 | 3.705289e-67 | -8.615850e-47 |
Msa0369380 | Msa0480320 | 0.806891 | 6.601117e-50 | -8.615850e-47 |
Msa0369380 | Msa0521880 | 0.802733 | 4.877612e-49 | -8.615850e-47 |
Msa0369380 | Msa0535030 | 0.800758 | 1.240176e-48 | -8.615850e-47 |
Msa0369380 | Msa0591770 | 0.817860 | 2.649152e-52 | -8.615850e-47 |
Msa0369380 | Msa1237030 | 0.818557 | 1.841884e-52 | -8.615850e-47 |
Msa0369380 | Msa1280130 | 0.809100 | 2.235993e-50 | -8.615850e-47 |
Msa0369380 | Msa1323190 | 0.803959 | 2.718154e-49 | -8.615850e-47 |
Msa0315240 | Msa0369380 | 0.802852 | 4.607638e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0369380 | MtrunA17_Chr3g0113661 | 96.364 | 275 | 8 | 1 | 1 | 273 | 1 | 275 | 0.0 | 537 |
Msa0369380 | MtrunA17_Chr3g0095171 | 98.544 | 206 | 3 | 0 | 68 | 273 | 1 | 206 | 1.90e-148 | 413 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0369380 | AT1G07780.5 | 61.091 | 275 | 105 | 1 | 1 | 273 | 1 | 275 | 1.13e-121 | 348 |
Msa0369380 | AT1G07780.10 | 61.091 | 275 | 105 | 1 | 1 | 273 | 1 | 275 | 1.13e-121 | 348 |
Msa0369380 | AT1G07780.13 | 61.091 | 275 | 105 | 1 | 1 | 273 | 1 | 275 | 1.13e-121 | 348 |
Msa0369380 | AT1G07780.3 | 61.091 | 275 | 105 | 1 | 1 | 273 | 1 | 275 | 1.13e-121 | 348 |
Msa0369380 | AT1G07780.12 | 61.091 | 275 | 105 | 1 | 1 | 273 | 1 | 275 | 1.13e-121 | 348 |
Msa0369380 | AT1G07780.2 | 61.091 | 275 | 105 | 1 | 1 | 273 | 1 | 275 | 1.13e-121 | 348 |
Msa0369380 | AT1G07780.1 | 61.091 | 275 | 105 | 1 | 1 | 273 | 1 | 275 | 1.13e-121 | 348 |
Msa0369380 | AT1G07780.9 | 61.091 | 275 | 105 | 1 | 1 | 273 | 1 | 275 | 1.13e-121 | 348 |
Msa0369380 | AT5G05590.1 | 61.091 | 275 | 105 | 1 | 1 | 273 | 1 | 275 | 1.31e-121 | 348 |
Msa0369380 | AT1G07780.7 | 72.330 | 206 | 57 | 0 | 68 | 273 | 1 | 206 | 4.24e-111 | 319 |
Msa0369380 | AT1G07780.6 | 52.941 | 221 | 100 | 2 | 1 | 217 | 1 | 221 | 6.94e-78 | 236 |
Msa0369380 | AT1G07780.8 | 52.941 | 221 | 100 | 2 | 1 | 217 | 1 | 221 | 6.94e-78 | 236 |
Msa0369380 | AT1G07780.4 | 57.500 | 200 | 83 | 1 | 1 | 198 | 1 | 200 | 9.50e-78 | 235 |
Msa0369380 | AT1G07780.11 | 57.500 | 200 | 83 | 1 | 1 | 198 | 1 | 200 | 9.50e-78 | 235 |
Msa0369380 | AT5G05590.4 | 52.941 | 221 | 100 | 2 | 1 | 217 | 1 | 221 | 9.94e-78 | 235 |
Msa0369380 | AT5G05590.3 | 57.500 | 200 | 83 | 1 | 1 | 198 | 1 | 200 | 1.14e-77 | 234 |
Msa0369380 | AT1G29410.1 | 55.140 | 214 | 91 | 2 | 1 | 212 | 1 | 211 | 1.53e-76 | 232 |
Msa0369380 | AT1G29410.6 | 55.140 | 214 | 91 | 2 | 1 | 212 | 1 | 211 | 1.53e-76 | 232 |
Msa0369380 | AT1G29410.4 | 57.000 | 200 | 84 | 1 | 1 | 198 | 1 | 200 | 4.14e-76 | 232 |
Msa0369380 | AT1G29410.2 | 57.000 | 200 | 84 | 1 | 1 | 198 | 1 | 200 | 4.14e-76 | 232 |
Msa0369380 | AT1G29410.7 | 57.895 | 190 | 75 | 2 | 25 | 212 | 4 | 190 | 3.37e-72 | 220 |
Msa0369380 | AT5G05590.2 | 46.614 | 251 | 100 | 3 | 1 | 217 | 1 | 251 | 9.40e-72 | 221 |
Msa0369380 | AT1G29410.5 | 60.227 | 176 | 68 | 1 | 25 | 198 | 4 | 179 | 1.09e-71 | 220 |
Msa0369380 | AT1G29410.3 | 60.227 | 176 | 68 | 1 | 25 | 198 | 4 | 179 | 1.09e-71 | 220 |
Find 72 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATCAGGAATTGTGTTTAAA+AGG | 0.166323 | 3_1:-66589694 | None:intergenic |
TTGAGGTTCACAATAATTTA+AGG | 0.183305 | 3_1:-66590104 | None:intergenic |
GCTGGCTGATATATCATATA+TGG | 0.289604 | 3_1:+66590237 | Msa0369380:three_prime_UTR |
TGCCAACTCATTAAGTTTGC+AGG | 0.289823 | 3_1:-66589217 | None:intergenic |
GAAGCTGGAGCAAACTTTAT+TGG | 0.301502 | 3_1:+66589333 | Msa0369380:CDS |
TCCTCTAGTTGATTGGGTTC+TGG | 0.309444 | 3_1:+66589724 | Msa0369380:CDS |
GTTTGAACAATGCAGCTTCA+TGG | 0.326335 | 3_1:+66589590 | Msa0369380:intron |
AGCTTTCCCATCTTTGATTC+AGG | 0.337440 | 3_1:+66589628 | Msa0369380:CDS |
GCTGCTATGGCGGCCGAAGC+TGG | 0.347935 | 3_1:+66589318 | Msa0369380:CDS |
AAATGGACTAGAAAACAAAA+TGG | 0.357580 | 3_1:-66590157 | None:intergenic |
ATCAAGAATAGCTTCCTTCA+TGG | 0.376096 | 3_1:+66590051 | Msa0369380:CDS |
CTGAGAACATTGTGAAACTT+TGG | 0.381698 | 3_1:-66586898 | None:intergenic |
TCTAAAGAAGAAAGAACTTT+GGG | 0.386103 | 3_1:-66590185 | None:intergenic |
AAGAGTGTCCTCTAGTTGAT+TGG | 0.386882 | 3_1:+66589717 | Msa0369380:CDS |
TTGCAGGAAATTTCATACTT+TGG | 0.387010 | 3_1:-66589201 | None:intergenic |
CAGTGGGGAAGCATTTGATT+GGG | 0.387462 | 3_1:+66589871 | Msa0369380:intron |
CAAAGTTTCACAATGTTCTC+AGG | 0.389680 | 3_1:+66586899 | Msa0369380:exon |
TTCAACAACTGGGAGTTACT+TGG | 0.396508 | 3_1:+66588833 | Msa0369380:CDS |
GCAGTGGGGAAGCATTTGAT+TGG | 0.399536 | 3_1:+66589870 | Msa0369380:intron |
ACTTGAAAAGAGTAAACCTT+TGG | 0.418004 | 3_1:+66589263 | Msa0369380:CDS |
ACAATGCAGCTTCATGGATC+TGG | 0.423857 | 3_1:+66589596 | Msa0369380:intron |
AAGAACTTTGGGAATACAAA+TGG | 0.426464 | 3_1:-66590174 | None:intergenic |
AATAAAGTTTGCTCCAGCTT+CGG | 0.453047 | 3_1:-66589331 | None:intergenic |
GTCTAAAGAAGAAAGAACTT+TGG | 0.458275 | 3_1:-66590186 | None:intergenic |
TTCCTGCAAACTTAATGAGT+TGG | 0.460023 | 3_1:+66589215 | Msa0369380:CDS |
AGCTTCATGGATCTGGTTCG+CGG | 0.464460 | 3_1:+66589603 | Msa0369380:intron |
TCATCCACAAATACTCCAAC+AGG | 0.465466 | 3_1:-66589444 | None:intergenic |
TTCCACAAAAGACCGATTCC+AGG | 0.472417 | 3_1:+66588873 | Msa0369380:CDS |
AAGCAAATATGGTTGGCTCT+TGG | 0.483948 | 3_1:+66589919 | Msa0369380:CDS |
AGAGTGTCCTCTAGTTGATT+GGG | 0.483984 | 3_1:+66589718 | Msa0369380:CDS |
ACTAGAGGACACTCTTCATC+AGG | 0.491260 | 3_1:-66589710 | None:intergenic |
ATTATTGTGAACCTCAAGAA+AGG | 0.496990 | 3_1:+66590110 | Msa0369380:three_prime_UTR |
AAATATGGTTGGCTCTTGGC+AGG | 0.497385 | 3_1:+66589923 | Msa0369380:CDS |
TGTTTCACTTTCTGTTGCAA+AGG | 0.498388 | 3_1:+66589386 | Msa0369380:CDS |
TTACAAAATCACCTTTCTTG+AGG | 0.504113 | 3_1:-66590121 | None:intergenic |
AAAGCCTCACGAACATTCTC+AGG | 0.505756 | 3_1:-66589956 | None:intergenic |
TCAAAAGTTGCAAGAGATTG+TGG | 0.507409 | 3_1:+66589414 | Msa0369380:CDS |
GAGTCGATTGAGGTTGAGAC+GGG | 0.511237 | 3_1:+66586837 | None:intergenic |
TAGATAGTGCAAAGGGTGGC+AGG | 0.516369 | 3_1:+66589747 | Msa0369380:CDS |
AGAGCCTGTTGGAGTATTTG+TGG | 0.521575 | 3_1:+66589440 | Msa0369380:CDS |
ATCAAATCTTGAGTTTGTGC+AGG | 0.523243 | 3_1:+66589500 | Msa0369380:CDS |
AAGACTAGACTACCTGGAAT+CGG | 0.524029 | 3_1:-66588885 | None:intergenic |
AAATGTTTCATGTTCATCAA+AGG | 0.525170 | 3_1:+66589239 | Msa0369380:CDS |
ATCAGCTAAAGATGCTGCTA+TGG | 0.526392 | 3_1:+66589305 | Msa0369380:CDS |
GCTTCATGGATCTGGTTCGC+GGG | 0.535795 | 3_1:+66589604 | Msa0369380:intron |
GCATGAGAATATTGTAATGC+TGG | 0.542730 | 3_1:+66590219 | Msa0369380:three_prime_UTR |
GGCTCCCATCAGCATTTGCA+TGG | 0.555209 | 3_1:-66589673 | None:intergenic |
CTACTGACATCCACTCCTCC+AGG | 0.559568 | 3_1:-66589992 | None:intergenic |
GTTCTCCATGCAAATGCTGA+TGG | 0.559769 | 3_1:+66589668 | Msa0369380:CDS |
AAATTAGAAGCAAATATGGT+TGG | 0.569037 | 3_1:+66589912 | Msa0369380:CDS |
TAGTCTCAAACCTGGAGGAG+TGG | 0.574489 | 3_1:+66589982 | Msa0369380:CDS |
AAACCTTTGGTTAAGATGTG+TGG | 0.574556 | 3_1:+66589276 | Msa0369380:intron |
GATTGTGGAGCAGAGCCTGT+TGG | 0.580954 | 3_1:+66589429 | Msa0369380:CDS |
AACAGAGTTAGAGTCGATTG+AGG | 0.589202 | 3_1:+66586827 | None:intergenic |
ATGGTTGGCTCTTGGCAGGA+GGG | 0.589722 | 3_1:+66589927 | Msa0369380:CDS |
TTTGTACAGGTTCAACAACT+GGG | 0.593913 | 3_1:+66588823 | Msa0369380:intron |
AGAGTCGATTGAGGTTGAGA+CGG | 0.598456 | 3_1:+66586836 | None:intergenic |
AGAATGTACTGCATCCATGA+AGG | 0.601091 | 3_1:-66590065 | None:intergenic |
ACTTTATTGGTATGATCGTG+TGG | 0.601436 | 3_1:+66589346 | Msa0369380:CDS |
TGCATCAGATGGCATTCAGA+AGG | 0.604378 | 3_1:+66590024 | Msa0369380:CDS |
TATGGTTGGCTCTTGGCAGG+AGG | 0.607292 | 3_1:+66589926 | Msa0369380:CDS |
TTCTCCATGCAAATGCTGAT+GGG | 0.608881 | 3_1:+66589669 | Msa0369380:CDS |
GTTCTGGTAGATAGTGCAAA+GGG | 0.610316 | 3_1:+66589740 | Msa0369380:CDS |
AGCGGCATATGTGCATCAGA+TGG | 0.611930 | 3_1:+66590013 | Msa0369380:CDS |
AGCTAAAGATGCTGCTATGG+CGG | 0.622801 | 3_1:+66589308 | Msa0369380:CDS |
GCTTTGTCTAGTCTCAAACC+TGG | 0.631502 | 3_1:+66589974 | Msa0369380:CDS |
GGTTCTGGTAGATAGTGCAA+AGG | 0.632272 | 3_1:+66589739 | Msa0369380:CDS |
ACCAGAACCCAATCAACTAG+AGG | 0.654201 | 3_1:-66589725 | None:intergenic |
CAATCCTGAGAATGTTCGTG+AGG | 0.659098 | 3_1:+66589952 | Msa0369380:CDS |
GGAGGAGTGGATGTCAGTAG+CGG | 0.679932 | 3_1:+66589995 | Msa0369380:CDS |
CTGGTAGATAGTGCAAAGGG+TGG | 0.687302 | 3_1:+66589743 | Msa0369380:CDS |
TTGTCTAGTCTCAAACCTGG+AGG | 0.687383 | 3_1:+66589977 | Msa0369380:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CATTTAAATATAATTTTTGT+AGG | + | chr3_1:66589135-66589154 | Msa0369380:intron | 10.0% |
!! | AATTAAGAGAAATTATTTAC+TGG | + | chr3_1:66587080-66587099 | Msa0369380:intron | 15.0% |
!!! | TCATTTTCTCAAATTATTAA+CGG | - | chr3_1:66587190-66587209 | None:intergenic | 15.0% |
!! | ATAGTCATAATAAAAGAAAT+TGG | - | chr3_1:66588026-66588045 | None:intergenic | 15.0% |
!!! | CATTTTTATGATGTTATTAT+TGG | + | chr3_1:66588725-66588744 | Msa0369380:intron | 15.0% |
!!! | AATTTTTGGTAATTTAAACT+GGG | - | chr3_1:66589897-66589916 | None:intergenic | 15.0% |
!!! | TAATTTTTGGTAATTTAAAC+TGG | - | chr3_1:66589898-66589917 | None:intergenic | 15.0% |
!!! | AATTATTTGTTAATGCAGTT+AGG | - | chr3_1:66587628-66587647 | None:intergenic | 20.0% |
!!! | AAAGATTAGTTAATGCATTT+AGG | - | chr3_1:66588675-66588694 | None:intergenic | 20.0% |
!! | TTGAAGAACATAAAAATTCA+CGG | - | chr3_1:66588754-66588773 | None:intergenic | 20.0% |
! | ATGAAATTCATCAAACAAGT+GGG | - | chr3_1:66586988-66587007 | None:intergenic | 25.0% |
! | TATGAAATTCATCAAACAAG+TGG | - | chr3_1:66586989-66587008 | None:intergenic | 25.0% |
! | CAAATCATAGTGATTATCAT+TGG | - | chr3_1:66587392-66587411 | None:intergenic | 25.0% |
!! | TGATAATCACTATGATTTGT+AGG | + | chr3_1:66587393-66587412 | Msa0369380:intron | 25.0% |
! | AAACTGAATAGAACAAACTT+GGG | - | chr3_1:66587430-66587449 | None:intergenic | 25.0% |
! | AAAACTGAATAGAACAAACT+TGG | - | chr3_1:66587431-66587450 | None:intergenic | 25.0% |
! | TGTATAAAGCATAAACTCAA+TGG | - | chr3_1:66588353-66588372 | None:intergenic | 25.0% |
! | GCTTTATACACATAATTATG+AGG | + | chr3_1:66588363-66588382 | Msa0369380:intron | 25.0% |
! | TCTTGATTAGGATATCTTTA+TGG | - | chr3_1:66588550-66588569 | None:intergenic | 25.0% |
!! | AAAAGAAAACATAACTTGCA+AGG | - | chr3_1:66588805-66588824 | None:intergenic | 25.0% |
!! | GTTATGTTTTCTTTTTGTAC+AGG | + | chr3_1:66588810-66588829 | Msa0369380:intron | 25.0% |
!! | ATAATTTTTGTAGGTTTGAG+AGG | + | chr3_1:66589144-66589163 | Msa0369380:intron | 25.0% |
!!! | CAATTTTCTAGCATAAGATT+CGG | + | chr3_1:66589177-66589196 | Msa0369380:CDS | 25.0% |
! | AAATGTTTCATGTTCATCAA+AGG | + | chr3_1:66589239-66589258 | Msa0369380:CDS | 25.0% |
!! | CCATATTTGCTTCTAATTTT+TGG | - | chr3_1:66589911-66589930 | None:intergenic | 25.0% |
! | CCAAAAATTAGAAGCAAATA+TGG | + | chr3_1:66589908-66589927 | Msa0369380:CDS | 25.0% |
! | AAATTAGAAGCAAATATGGT+TGG | + | chr3_1:66589912-66589931 | Msa0369380:CDS | 25.0% |
! | TTGAGGTTCACAATAATTTA+AGG | - | chr3_1:66590107-66590126 | None:intergenic | 25.0% |
!!! | AAATGGACTAGAAAACAAAA+TGG | - | chr3_1:66590160-66590179 | None:intergenic | 25.0% |
! | TCTAAAGAAGAAAGAACTTT+GGG | - | chr3_1:66590188-66590207 | None:intergenic | 25.0% |
TGAAATTCATCAAACAAGTG+GGG | - | chr3_1:66586987-66587006 | None:intergenic | 30.0% | |
TTGAATGTAATCACATGTGT+TGG | + | chr3_1:66587215-66587234 | Msa0369380:intron | 30.0% | |
! | TTATCATTGGCTGAAATGAA+GGG | - | chr3_1:66587379-66587398 | None:intergenic | 30.0% |
! | ATTATCATTGGCTGAAATGA+AGG | - | chr3_1:66587380-66587399 | None:intergenic | 30.0% |
AACTGAATAGAACAAACTTG+GGG | - | chr3_1:66587429-66587448 | None:intergenic | 30.0% | |
TTGTTAATGCAGTTAGGATA+CGG | - | chr3_1:66587622-66587641 | None:intergenic | 30.0% | |
GATAATTCAACAACAGATTG+CGG | - | chr3_1:66587812-66587831 | None:intergenic | 30.0% | |
! | ATTTTCCTCGGAAGAAAATA+TGG | - | chr3_1:66588053-66588072 | None:intergenic | 30.0% |
ATAAATAGAAGGTTAACTGC+AGG | - | chr3_1:66588083-66588102 | None:intergenic | 30.0% | |
CACTTTAAGCTACTTGATAT+TGG | + | chr3_1:66588161-66588180 | Msa0369380:intron | 30.0% | |
AAGATTAACTTCTGGTATCA+TGG | - | chr3_1:66588290-66588309 | None:intergenic | 30.0% | |
AAGCATTAGCATACAATAAG+AGG | - | chr3_1:66588422-66588441 | None:intergenic | 30.0% | |
TGATTTCCATGCTAAGAAAT+TGG | + | chr3_1:66588441-66588460 | Msa0369380:intron | 30.0% | |
AGCTCATTCTTGTTCAAATT+CGG | - | chr3_1:66588472-66588491 | None:intergenic | 30.0% | |
TTTGAACAAGAATGAGCTTA+AGG | + | chr3_1:66588474-66588493 | Msa0369380:intron | 30.0% | |
TAGTTAATGCATTTAGGAGT+CGG | - | chr3_1:66588669-66588688 | None:intergenic | 30.0% | |
CACAAGAACAATAATGTACA+TGG | - | chr3_1:66588781-66588800 | None:intergenic | 30.0% | |
TAAATAAAGACTAGACTACC+TGG | - | chr3_1:66588894-66588913 | None:intergenic | 30.0% | |
! | TGGTATATGTCTCAATTTTC+AGG | + | chr3_1:66588935-66588954 | Msa0369380:intron | 30.0% |
!! | TGTATTGTTTGAAAGCATCA+TGG | + | chr3_1:66589009-66589028 | Msa0369380:intron | 30.0% |
GCATCAAATTTCTAAGTACA+AGG | + | chr3_1:66589100-66589119 | Msa0369380:intron | 30.0% | |
TTGCAGGAAATTTCATACTT+TGG | - | chr3_1:66589204-66589223 | None:intergenic | 30.0% | |
ACTTGAAAAGAGTAAACCTT+TGG | + | chr3_1:66589263-66589282 | Msa0369380:CDS | 30.0% | |
! | GATTTTCCTGAATCAAAGAT+GGG | - | chr3_1:66589637-66589656 | None:intergenic | 30.0% |
CATCAGGAATTGTGTTTAAA+AGG | - | chr3_1:66589697-66589716 | None:intergenic | 30.0% | |
!!! | AATGTTTTAGAACTCATGAG+AGG | + | chr3_1:66589842-66589861 | Msa0369380:intron | 30.0% |
ATTATTGTGAACCTCAAGAA+AGG | + | chr3_1:66590110-66590129 | Msa0369380:three_prime_UTR | 30.0% | |
TTACAAAATCACCTTTCTTG+AGG | - | chr3_1:66590124-66590143 | None:intergenic | 30.0% | |
! | AAGAACTTTGGGAATACAAA+TGG | - | chr3_1:66590177-66590196 | None:intergenic | 30.0% |
GTCTAAAGAAGAAAGAACTT+TGG | - | chr3_1:66590189-66590208 | None:intergenic | 30.0% | |
!!! | TCTTCTTTAGACTGCTTTTT+AGG | + | chr3_1:66590197-66590216 | Msa0369380:three_prime_UTR | 30.0% |
CTGAGAACATTGTGAAACTT+TGG | - | chr3_1:66586901-66586920 | None:intergenic | 35.0% | |
CAAAGTTTCACAATGTTCTC+AGG | + | chr3_1:66586899-66586918 | Msa0369380:exon | 35.0% | |
CGCGAAGAGTAAAATGAAAT+GGG | - | chr3_1:66586937-66586956 | None:intergenic | 35.0% | |
CACAATAAACAATTGCTCAG+GGG | - | chr3_1:66587345-66587364 | None:intergenic | 35.0% | |
GCACAATAAACAATTGCTCA+GGG | - | chr3_1:66587346-66587365 | None:intergenic | 35.0% | |
AGCACAATAAACAATTGCTC+AGG | - | chr3_1:66587347-66587366 | None:intergenic | 35.0% | |
! | GCAGAGCTATTTCACTATAA+AGG | - | chr3_1:66587480-66587499 | None:intergenic | 35.0% |
AAGACAGACACTACGATATT+AGG | - | chr3_1:66587502-66587521 | None:intergenic | 35.0% | |
TCAGGAGCTATTAATGTGAA+GGG | - | chr3_1:66587662-66587681 | None:intergenic | 35.0% | |
!! | TAACCTCTTTGAGATTGACT+CGG | + | chr3_1:66587712-66587731 | Msa0369380:intron | 35.0% |
! | TTTTGTCGCAAGTGAAGTAT+GGG | + | chr3_1:66587866-66587885 | Msa0369380:intron | 35.0% |
TGTTATCACGCTAGACATTT+AGG | + | chr3_1:66587915-66587934 | Msa0369380:intron | 35.0% | |
GTTATCACGCTAGACATTTA+GGG | + | chr3_1:66587916-66587935 | Msa0369380:intron | 35.0% | |
TTATCACGCTAGACATTTAG+GGG | + | chr3_1:66587917-66587936 | Msa0369380:intron | 35.0% | |
! | TTTCCAGATCTATAGCTTTG+AGG | - | chr3_1:66588000-66588019 | None:intergenic | 35.0% |
GGCTTATGCAGATAAATAGA+AGG | - | chr3_1:66588094-66588113 | None:intergenic | 35.0% | |
TAGCTTAAAGTGCAACTCAA+GGG | - | chr3_1:66588153-66588172 | None:intergenic | 35.0% | |
!! | AAGCTACTTGATATTGGCTT+TGG | + | chr3_1:66588167-66588186 | Msa0369380:intron | 35.0% |
!! | AGCTACTTGATATTGGCTTT+GGG | + | chr3_1:66588168-66588187 | Msa0369380:intron | 35.0% |
GTGATCATGCGTATCAAATT+CGG | - | chr3_1:66588224-66588243 | None:intergenic | 35.0% | |
TCTCTCTTCTTCTCTTGATT+AGG | - | chr3_1:66588562-66588581 | None:intergenic | 35.0% | |
AGAGAAGAAGAGAGAATTTG+TGG | + | chr3_1:66588567-66588586 | Msa0369380:intron | 35.0% | |
GTAATGTTTACCAAGCACAT+TGG | - | chr3_1:66588597-66588616 | None:intergenic | 35.0% | |
ACAGATCTGAGTGAGATATA+TGG | + | chr3_1:66588615-66588634 | Msa0369380:intron | 35.0% | |
! | TTTTGTACAGGTTCAACAAC+TGG | + | chr3_1:66588822-66588841 | Msa0369380:intron | 35.0% |
TTTGTACAGGTTCAACAACT+GGG | + | chr3_1:66588823-66588842 | Msa0369380:intron | 35.0% | |
TGAGTATATTGTCTCTCTTC+TGG | + | chr3_1:66588915-66588934 | Msa0369380:intron | 35.0% | |
AAACCTACATGAGGAATAAG+TGG | - | chr3_1:66588972-66588991 | None:intergenic | 35.0% | |
CATGAAACTAAACCTACATG+AGG | - | chr3_1:66588981-66589000 | None:intergenic | 35.0% | |
CGAGGCTTTCATTTAAATAG+TGG | - | chr3_1:66589059-66589078 | None:intergenic | 35.0% | |
TTTAAATGAAAGCCTCGTGA+AGG | + | chr3_1:66589062-66589081 | Msa0369380:intron | 35.0% | |
TTAAATGAAAGCCTCGTGAA+GGG | + | chr3_1:66589063-66589082 | Msa0369380:intron | 35.0% | |
TTCCTGCAAACTTAATGAGT+TGG | + | chr3_1:66589215-66589234 | Msa0369380:CDS | 35.0% | |
AAACCTTTGGTTAAGATGTG+TGG | + | chr3_1:66589276-66589295 | Msa0369380:intron | 35.0% | |
! | AATAAAGTTTGCTCCAGCTT+CGG | - | chr3_1:66589334-66589353 | None:intergenic | 35.0% |
ACTTTATTGGTATGATCGTG+TGG | + | chr3_1:66589346-66589365 | Msa0369380:CDS | 35.0% | |
!!! | GAAACAGAACGTTTTGAGTT+TGG | - | chr3_1:66589372-66589391 | None:intergenic | 35.0% |
TGTTTCACTTTCTGTTGCAA+AGG | + | chr3_1:66589386-66589405 | Msa0369380:CDS | 35.0% | |
TCAAAAGTTGCAAGAGATTG+TGG | + | chr3_1:66589414-66589433 | Msa0369380:CDS | 35.0% | |
ATCAAATCTTGAGTTTGTGC+AGG | + | chr3_1:66589500-66589519 | Msa0369380:CDS | 35.0% | |
GTTGAACATGCATAAAAGTC+AGG | - | chr3_1:66589536-66589555 | None:intergenic | 35.0% | |
TTCAACGACAGTTAAATGCT+TGG | + | chr3_1:66589550-66589569 | Msa0369380:intron | 35.0% | |
! | CGATTTTCCTGAATCAAAGA+TGG | - | chr3_1:66589638-66589657 | None:intergenic | 35.0% |
ATCAAGAATAGCTTCCTTCA+TGG | + | chr3_1:66590051-66590070 | Msa0369380:CDS | 35.0% | |
GCATGAGAATATTGTAATGC+TGG | + | chr3_1:66590219-66590238 | Msa0369380:three_prime_UTR | 35.0% | |
GCTGGCTGATATATCATATA+TGG | + | chr3_1:66590237-66590256 | Msa0369380:three_prime_UTR | 35.0% | |
GCGCGAAGAGTAAAATGAAA+TGG | - | chr3_1:66586938-66586957 | None:intergenic | 40.0% | |
ATTTCGTTATCGACAGGAGT+CGG | - | chr3_1:66587250-66587269 | None:intergenic | 40.0% | |
! | AAGGCTATTTCGTTATCGAC+AGG | - | chr3_1:66587256-66587275 | None:intergenic | 40.0% |
GTCAGGAGCTATTAATGTGA+AGG | - | chr3_1:66587663-66587682 | None:intergenic | 40.0% | |
ACTTCACCAACTTGATCTTG+AGG | - | chr3_1:66587692-66587711 | None:intergenic | 40.0% | |
TATCCGAGTCAATCTCAAAG+AGG | - | chr3_1:66587718-66587737 | None:intergenic | 40.0% | |
TTCACTTGCGACAAAACAGT+TGG | - | chr3_1:66587862-66587881 | None:intergenic | 40.0% | |
! | GTTTTGTCGCAAGTGAAGTA+TGG | + | chr3_1:66587865-66587884 | Msa0369380:intron | 40.0% |
TTTGTCGCAAGTGAAGTATG+GGG | + | chr3_1:66587867-66587886 | Msa0369380:intron | 40.0% | |
TTGCCTCAAAGCTATAGATC+TGG | + | chr3_1:66587994-66588013 | Msa0369380:intron | 40.0% | |
TTCCTCGGAAGAAAATATGG+TGG | - | chr3_1:66588050-66588069 | None:intergenic | 40.0% | |
!! | GCAGGCTATTTCATTTTCCT+CGG | - | chr3_1:66588065-66588084 | None:intergenic | 40.0% |
TGCGTATTGTGATTTGACTG+GGG | - | chr3_1:66588115-66588134 | None:intergenic | 40.0% | |
GTGCGTATTGTGATTTGACT+GGG | - | chr3_1:66588116-66588135 | None:intergenic | 40.0% | |
! | CTCAAGGGTGTGAAGAAAAT+TGG | - | chr3_1:66588138-66588157 | None:intergenic | 40.0% |
GTAGCTTAAAGTGCAACTCA+AGG | - | chr3_1:66588154-66588173 | None:intergenic | 40.0% | |
!! | GATATTGGCTTTGGGTTAAG+AGG | + | chr3_1:66588176-66588195 | Msa0369380:intron | 40.0% |
TATCAAATTCGGCAGAAGCT+AGG | - | chr3_1:66588213-66588232 | None:intergenic | 40.0% | |
GGATCAGCAAGATTAACTTC+TGG | - | chr3_1:66588298-66588317 | None:intergenic | 40.0% | |
TAGTTTCGTGTAGTTCAGCT+GGG | - | chr3_1:66588324-66588343 | None:intergenic | 40.0% | |
TTAGTTTCGTGTAGTTCAGC+TGG | - | chr3_1:66588325-66588344 | None:intergenic | 40.0% | |
! | TGAGGAACTGCATTTTCACT+TGG | + | chr3_1:66588381-66588400 | Msa0369380:intron | 40.0% |
GTGAAGCCAATTTCTTAGCA+TGG | - | chr3_1:66588450-66588469 | None:intergenic | 40.0% | |
ATAGCTTCAGCCTCTATTGA+GGG | + | chr3_1:66588502-66588521 | Msa0369380:intron | 40.0% | |
TTGTGGTAAACCAATGTGCT+TGG | + | chr3_1:66588584-66588603 | Msa0369380:intron | 40.0% | |
GCTAGTAGCTACATGAATTG+TGG | - | chr3_1:66588706-66588725 | None:intergenic | 40.0% | |
TTCAACAACTGGGAGTTACT+TGG | + | chr3_1:66588833-66588852 | Msa0369380:CDS | 40.0% | |
AAGACTAGACTACCTGGAAT+CGG | - | chr3_1:66588888-66588907 | None:intergenic | 40.0% | |
GTACCACTTATTCCTCATGT+AGG | + | chr3_1:66588966-66588985 | Msa0369380:intron | 40.0% | |
TGCCAACTCATTAAGTTTGC+AGG | - | chr3_1:66589220-66589239 | None:intergenic | 40.0% | |
ATGCCACACATCTTAACCAA+AGG | - | chr3_1:66589282-66589301 | None:intergenic | 40.0% | |
ATCAGCTAAAGATGCTGCTA+TGG | + | chr3_1:66589305-66589324 | Msa0369380:CDS | 40.0% | |
GAAGCTGGAGCAAACTTTAT+TGG | + | chr3_1:66589333-66589352 | Msa0369380:CDS | 40.0% | |
TCATCCACAAATACTCCAAC+AGG | - | chr3_1:66589447-66589466 | None:intergenic | 40.0% | |
GTTTGAACAATGCAGCTTCA+TGG | + | chr3_1:66589590-66589609 | Msa0369380:intron | 40.0% | |
AGCTTTCCCATCTTTGATTC+AGG | + | chr3_1:66589628-66589647 | Msa0369380:CDS | 40.0% | |
TTCTCCATGCAAATGCTGAT+GGG | + | chr3_1:66589669-66589688 | Msa0369380:CDS | 40.0% | |
!! | AAGAGTGTCCTCTAGTTGAT+TGG | + | chr3_1:66589717-66589736 | Msa0369380:CDS | 40.0% |
! | AGAGTGTCCTCTAGTTGATT+GGG | + | chr3_1:66589718-66589737 | Msa0369380:CDS | 40.0% |
GTTCTGGTAGATAGTGCAAA+GGG | + | chr3_1:66589740-66589759 | Msa0369380:CDS | 40.0% | |
! | AAGCAAATATGGTTGGCTCT+TGG | + | chr3_1:66589919-66589938 | Msa0369380:CDS | 40.0% |
AGAATGTACTGCATCCATGA+AGG | - | chr3_1:66590068-66590087 | None:intergenic | 40.0% | |
TAGCCTTCGATCAGAAATGC+TGG | + | chr3_1:66587269-66587288 | Msa0369380:intron | 45.0% | |
ACACCAGCATTTCTGATCGA+AGG | - | chr3_1:66587275-66587294 | None:intergenic | 45.0% | |
TCTCCACCTCAAGATCAAGT+TGG | + | chr3_1:66587683-66587702 | Msa0369380:intron | 45.0% | |
TCACCAACTTGATCTTGAGG+TGG | - | chr3_1:66587689-66587708 | None:intergenic | 45.0% | |
ACGCTAGACATTTAGGGGTT+TGG | + | chr3_1:66587922-66587941 | Msa0369380:intron | 45.0% | |
! | TGCCACCATATTTTCTTCCG+AGG | + | chr3_1:66588045-66588064 | Msa0369380:intron | 45.0% |
GGTGCGTATTGTGATTTGAC+TGG | - | chr3_1:66588117-66588136 | None:intergenic | 45.0% | |
CTCTCACTGTTTCCATGGTA+AGG | - | chr3_1:66588248-66588267 | None:intergenic | 45.0% | |
CTTACCATGGAAACAGTGAG+AGG | + | chr3_1:66588246-66588265 | Msa0369380:intron | 45.0% | |
AGAACCTCTCACTGTTTCCA+TGG | - | chr3_1:66588253-66588272 | None:intergenic | 45.0% | |
ATGGAAACAGTGAGAGGTTC+TGG | + | chr3_1:66588252-66588271 | Msa0369380:intron | 45.0% | |
! | GCATTTTCACTTGGCGAAGA+AGG | + | chr3_1:66588390-66588409 | Msa0369380:intron | 45.0% |
CATAGCTTCAGCCTCTATTG+AGG | + | chr3_1:66588501-66588520 | Msa0369380:intron | 45.0% | |
AGAGTTCAGACCCTCAATAG+AGG | - | chr3_1:66588515-66588534 | None:intergenic | 45.0% | |
! | TTCCACAAAAGACCGATTCC+AGG | + | chr3_1:66588873-66588892 | Msa0369380:CDS | 45.0% |
! | TACCTGGAATCGGTCTTTTG+TGG | - | chr3_1:66588878-66588897 | None:intergenic | 45.0% |
AGCTAAAGATGCTGCTATGG+CGG | + | chr3_1:66589308-66589327 | Msa0369380:CDS | 45.0% | |
! | AGAGCCTGTTGGAGTATTTG+TGG | + | chr3_1:66589440-66589459 | Msa0369380:CDS | 45.0% |
ACAATGCAGCTTCATGGATC+TGG | + | chr3_1:66589596-66589615 | Msa0369380:intron | 45.0% | |
GTTCTCCATGCAAATGCTGA+TGG | + | chr3_1:66589668-66589687 | Msa0369380:CDS | 45.0% | |
ACTAGAGGACACTCTTCATC+AGG | - | chr3_1:66589713-66589732 | None:intergenic | 45.0% | |
TCCTCTAGTTGATTGGGTTC+TGG | + | chr3_1:66589724-66589743 | Msa0369380:CDS | 45.0% | |
ACCAGAACCCAATCAACTAG+AGG | - | chr3_1:66589728-66589747 | None:intergenic | 45.0% | |
! | GGTTCTGGTAGATAGTGCAA+AGG | + | chr3_1:66589739-66589758 | Msa0369380:CDS | 45.0% |
TCATGAGAGGTCTTTGCAGT+GGG | + | chr3_1:66589855-66589874 | Msa0369380:intron | 45.0% | |
!! | CAGTGGGGAAGCATTTGATT+GGG | + | chr3_1:66589871-66589890 | Msa0369380:intron | 45.0% |
! | AAATATGGTTGGCTCTTGGC+AGG | + | chr3_1:66589923-66589942 | Msa0369380:CDS | 45.0% |
CAATCCTGAGAATGTTCGTG+AGG | + | chr3_1:66589952-66589971 | Msa0369380:CDS | 45.0% | |
AAAGCCTCACGAACATTCTC+AGG | - | chr3_1:66589959-66589978 | None:intergenic | 45.0% | |
GCTTTGTCTAGTCTCAAACC+TGG | + | chr3_1:66589974-66589993 | Msa0369380:CDS | 45.0% | |
TTGTCTAGTCTCAAACCTGG+AGG | + | chr3_1:66589977-66589996 | Msa0369380:CDS | 45.0% | |
TGCATCAGATGGCATTCAGA+AGG | + | chr3_1:66590024-66590043 | Msa0369380:CDS | 45.0% | |
!! | TTATAATTAAAAAAAATAGT+TGG | - | chr3_1:66587581-66587600 | None:intergenic | 5.0% |
AAGTGGGGTGCACTACTTTC+AGG | - | chr3_1:66586972-66586991 | None:intergenic | 50.0% | |
TAAGTGTCTCGTGTCTGCGT+CGG | - | chr3_1:66587157-66587176 | None:intergenic | 50.0% | |
TGATCTTGAGGTGGAGAGTC+AGG | - | chr3_1:66587680-66587699 | None:intergenic | 50.0% | |
GGTTTGGCAGCTAGAACACA+AGG | + | chr3_1:66587938-66587957 | Msa0369380:intron | 50.0% | |
!! | TGGCTTTGGGTTAAGAGGCA+AGG | + | chr3_1:66588181-66588200 | Msa0369380:intron | 50.0% |
CGCATGATCACACCTTACCA+TGG | + | chr3_1:66588233-66588252 | Msa0369380:intron | 50.0% | |
TCGTGTAGTTCAGCTGGGAT+GGG | - | chr3_1:66588319-66588338 | None:intergenic | 50.0% | |
TTCGTGTAGTTCAGCTGGGA+TGG | - | chr3_1:66588320-66588339 | None:intergenic | 50.0% | |
! | CGGTCTTTTGTGGAAGTTCG+TGG | - | chr3_1:66588868-66588887 | None:intergenic | 50.0% |
TTTCCTCTCATCCCTTCACG+AGG | - | chr3_1:66589077-66589096 | None:intergenic | 50.0% | |
! | AGCTTCATGGATCTGGTTCG+CGG | + | chr3_1:66589603-66589622 | Msa0369380:intron | 50.0% |
CTGGTAGATAGTGCAAAGGG+TGG | + | chr3_1:66589743-66589762 | Msa0369380:CDS | 50.0% | |
TAGATAGTGCAAAGGGTGGC+AGG | + | chr3_1:66589747-66589766 | Msa0369380:CDS | 50.0% | |
AGGGTGGCAGGTAAAGACAT+AGG | + | chr3_1:66589759-66589778 | Msa0369380:intron | 50.0% | |
CTCATGAGAGGTCTTTGCAG+TGG | + | chr3_1:66589854-66589873 | Msa0369380:intron | 50.0% | |
CATGAGAGGTCTTTGCAGTG+GGG | + | chr3_1:66589856-66589875 | Msa0369380:intron | 50.0% | |
!! | GCAGTGGGGAAGCATTTGAT+TGG | + | chr3_1:66589870-66589889 | Msa0369380:intron | 50.0% |
TAGTCTCAAACCTGGAGGAG+TGG | + | chr3_1:66589982-66590001 | Msa0369380:CDS | 50.0% | |
AGCGGCATATGTGCATCAGA+TGG | + | chr3_1:66590013-66590032 | Msa0369380:CDS | 50.0% | |
ACGGGCTTTGCGACGAAAGT+GGG | + | chr3_1:66586855-66586874 | Msa0369380:intron | 55.0% | |
! | GACGAAAGTGGGCTCTGTAG+TGG | + | chr3_1:66586866-66586885 | Msa0369380:intron | 55.0% |
AAGCCTCGTGAAGGGATGAG+AGG | + | chr3_1:66589071-66589090 | Msa0369380:intron | 55.0% | |
GATTGTGGAGCAGAGCCTGT+TGG | + | chr3_1:66589429-66589448 | Msa0369380:CDS | 55.0% | |
! | GCTTCATGGATCTGGTTCGC+GGG | + | chr3_1:66589604-66589623 | Msa0369380:intron | 55.0% |
GGCTCCCATCAGCATTTGCA+TGG | - | chr3_1:66589676-66589695 | None:intergenic | 55.0% | |
! | TATGGTTGGCTCTTGGCAGG+AGG | + | chr3_1:66589926-66589945 | Msa0369380:CDS | 55.0% |
! | ATGGTTGGCTCTTGGCAGGA+GGG | + | chr3_1:66589927-66589946 | Msa0369380:CDS | 55.0% |
CTACTGACATCCACTCCTCC+AGG | - | chr3_1:66589995-66590014 | None:intergenic | 55.0% | |
GGAGGAGTGGATGTCAGTAG+CGG | + | chr3_1:66589995-66590014 | Msa0369380:CDS | 55.0% | |
! | GACGGGCTTTGCGACGAAAG+TGG | + | chr3_1:66586854-66586873 | Msa0369380:intron | 60.0% |
GCTGCTATGGCGGCCGAAGC+TGG | + | chr3_1:66589318-66589337 | Msa0369380:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 66586842 | 66590296 | 66586842 | ID=Msa0369380;Name=Msa0369380 |
chr3_1 | mRNA | 66586842 | 66590296 | 66586842 | ID=Msa0369380-mRNA-1;Parent=Msa0369380;Name=Msa0369380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=43|0.83|0.71|1|0.5|0.57|7|197|273 |
chr3_1 | exon | 66586842 | 66586864 | 66586842 | ID=Msa0369380-mRNA-1:exon:13555;Parent=Msa0369380-mRNA-1 |
chr3_1 | exon | 66586891 | 66586920 | 66586891 | ID=Msa0369380-mRNA-1:exon:13556;Parent=Msa0369380-mRNA-1 |
chr3_1 | exon | 66588832 | 66588894 | 66588832 | ID=Msa0369380-mRNA-1:exon:13557;Parent=Msa0369380-mRNA-1 |
chr3_1 | exon | 66589157 | 66589284 | 66589157 | ID=Msa0369380-mRNA-1:exon:13558;Parent=Msa0369380-mRNA-1 |
chr3_1 | exon | 66589291 | 66589521 | 66589291 | ID=Msa0369380-mRNA-1:exon:13559;Parent=Msa0369380-mRNA-1 |
chr3_1 | exon | 66589605 | 66589768 | 66589605 | ID=Msa0369380-mRNA-1:exon:13560;Parent=Msa0369380-mRNA-1 |
chr3_1 | exon | 66589874 | 66590296 | 66589874 | ID=Msa0369380-mRNA-1:exon:13561;Parent=Msa0369380-mRNA-1 |
chr3_1 | five_prime_UTR | 66586842 | 66586864 | 66586842 | ID=Msa0369380-mRNA-1:five_prime_utr;Parent=Msa0369380-mRNA-1 |
chr3_1 | five_prime_UTR | 66586891 | 66586910 | 66586891 | ID=Msa0369380-mRNA-1:five_prime_utr;Parent=Msa0369380-mRNA-1 |
chr3_1 | CDS | 66586911 | 66586920 | 66586911 | ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1 |
chr3_1 | CDS | 66588832 | 66588894 | 66588832 | ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1 |
chr3_1 | CDS | 66589157 | 66589284 | 66589157 | ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1 |
chr3_1 | CDS | 66589291 | 66589521 | 66589291 | ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1 |
chr3_1 | CDS | 66589605 | 66589768 | 66589605 | ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1 |
chr3_1 | CDS | 66589874 | 66590099 | 66589874 | ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1 |
chr3_1 | three_prime_UTR | 66590100 | 66590296 | 66590100 | ID=Msa0369380-mRNA-1:three_prime_utr;Parent=Msa0369380-mRNA-1 |
Gene Sequence |
Protein sequence |