AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0369380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369380 MtrunA17_Chr3g0113661 96.364 275 8 1 1 273 1 275 0.0 537
Msa0369380 MtrunA17_Chr3g0095171 98.544 206 3 0 68 273 1 206 1.90e-148 413
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369380 AT1G07780.5 61.091 275 105 1 1 273 1 275 1.13e-121 348
Msa0369380 AT1G07780.10 61.091 275 105 1 1 273 1 275 1.13e-121 348
Msa0369380 AT1G07780.13 61.091 275 105 1 1 273 1 275 1.13e-121 348
Msa0369380 AT1G07780.3 61.091 275 105 1 1 273 1 275 1.13e-121 348
Msa0369380 AT1G07780.12 61.091 275 105 1 1 273 1 275 1.13e-121 348
Msa0369380 AT1G07780.2 61.091 275 105 1 1 273 1 275 1.13e-121 348
Msa0369380 AT1G07780.1 61.091 275 105 1 1 273 1 275 1.13e-121 348
Msa0369380 AT1G07780.9 61.091 275 105 1 1 273 1 275 1.13e-121 348
Msa0369380 AT5G05590.1 61.091 275 105 1 1 273 1 275 1.31e-121 348
Msa0369380 AT1G07780.7 72.330 206 57 0 68 273 1 206 4.24e-111 319
Msa0369380 AT1G07780.6 52.941 221 100 2 1 217 1 221 6.94e-78 236
Msa0369380 AT1G07780.8 52.941 221 100 2 1 217 1 221 6.94e-78 236
Msa0369380 AT1G07780.4 57.500 200 83 1 1 198 1 200 9.50e-78 235
Msa0369380 AT1G07780.11 57.500 200 83 1 1 198 1 200 9.50e-78 235
Msa0369380 AT5G05590.4 52.941 221 100 2 1 217 1 221 9.94e-78 235
Msa0369380 AT5G05590.3 57.500 200 83 1 1 198 1 200 1.14e-77 234
Msa0369380 AT1G29410.1 55.140 214 91 2 1 212 1 211 1.53e-76 232
Msa0369380 AT1G29410.6 55.140 214 91 2 1 212 1 211 1.53e-76 232
Msa0369380 AT1G29410.4 57.000 200 84 1 1 198 1 200 4.14e-76 232
Msa0369380 AT1G29410.2 57.000 200 84 1 1 198 1 200 4.14e-76 232
Msa0369380 AT1G29410.7 57.895 190 75 2 25 212 4 190 3.37e-72 220
Msa0369380 AT5G05590.2 46.614 251 100 3 1 217 1 251 9.40e-72 221
Msa0369380 AT1G29410.5 60.227 176 68 1 25 198 4 179 1.09e-71 220
Msa0369380 AT1G29410.3 60.227 176 68 1 25 198 4 179 1.09e-71 220

Find 72 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAGGAATTGTGTTTAAA+AGG 0.166323 3_1:-66589694 None:intergenic
TTGAGGTTCACAATAATTTA+AGG 0.183305 3_1:-66590104 None:intergenic
GCTGGCTGATATATCATATA+TGG 0.289604 3_1:+66590237 Msa0369380:three_prime_UTR
TGCCAACTCATTAAGTTTGC+AGG 0.289823 3_1:-66589217 None:intergenic
GAAGCTGGAGCAAACTTTAT+TGG 0.301502 3_1:+66589333 Msa0369380:CDS
TCCTCTAGTTGATTGGGTTC+TGG 0.309444 3_1:+66589724 Msa0369380:CDS
GTTTGAACAATGCAGCTTCA+TGG 0.326335 3_1:+66589590 Msa0369380:intron
AGCTTTCCCATCTTTGATTC+AGG 0.337440 3_1:+66589628 Msa0369380:CDS
GCTGCTATGGCGGCCGAAGC+TGG 0.347935 3_1:+66589318 Msa0369380:CDS
AAATGGACTAGAAAACAAAA+TGG 0.357580 3_1:-66590157 None:intergenic
ATCAAGAATAGCTTCCTTCA+TGG 0.376096 3_1:+66590051 Msa0369380:CDS
CTGAGAACATTGTGAAACTT+TGG 0.381698 3_1:-66586898 None:intergenic
TCTAAAGAAGAAAGAACTTT+GGG 0.386103 3_1:-66590185 None:intergenic
AAGAGTGTCCTCTAGTTGAT+TGG 0.386882 3_1:+66589717 Msa0369380:CDS
TTGCAGGAAATTTCATACTT+TGG 0.387010 3_1:-66589201 None:intergenic
CAGTGGGGAAGCATTTGATT+GGG 0.387462 3_1:+66589871 Msa0369380:intron
CAAAGTTTCACAATGTTCTC+AGG 0.389680 3_1:+66586899 Msa0369380:exon
TTCAACAACTGGGAGTTACT+TGG 0.396508 3_1:+66588833 Msa0369380:CDS
GCAGTGGGGAAGCATTTGAT+TGG 0.399536 3_1:+66589870 Msa0369380:intron
ACTTGAAAAGAGTAAACCTT+TGG 0.418004 3_1:+66589263 Msa0369380:CDS
ACAATGCAGCTTCATGGATC+TGG 0.423857 3_1:+66589596 Msa0369380:intron
AAGAACTTTGGGAATACAAA+TGG 0.426464 3_1:-66590174 None:intergenic
AATAAAGTTTGCTCCAGCTT+CGG 0.453047 3_1:-66589331 None:intergenic
GTCTAAAGAAGAAAGAACTT+TGG 0.458275 3_1:-66590186 None:intergenic
TTCCTGCAAACTTAATGAGT+TGG 0.460023 3_1:+66589215 Msa0369380:CDS
AGCTTCATGGATCTGGTTCG+CGG 0.464460 3_1:+66589603 Msa0369380:intron
TCATCCACAAATACTCCAAC+AGG 0.465466 3_1:-66589444 None:intergenic
TTCCACAAAAGACCGATTCC+AGG 0.472417 3_1:+66588873 Msa0369380:CDS
AAGCAAATATGGTTGGCTCT+TGG 0.483948 3_1:+66589919 Msa0369380:CDS
AGAGTGTCCTCTAGTTGATT+GGG 0.483984 3_1:+66589718 Msa0369380:CDS
ACTAGAGGACACTCTTCATC+AGG 0.491260 3_1:-66589710 None:intergenic
ATTATTGTGAACCTCAAGAA+AGG 0.496990 3_1:+66590110 Msa0369380:three_prime_UTR
AAATATGGTTGGCTCTTGGC+AGG 0.497385 3_1:+66589923 Msa0369380:CDS
TGTTTCACTTTCTGTTGCAA+AGG 0.498388 3_1:+66589386 Msa0369380:CDS
TTACAAAATCACCTTTCTTG+AGG 0.504113 3_1:-66590121 None:intergenic
AAAGCCTCACGAACATTCTC+AGG 0.505756 3_1:-66589956 None:intergenic
TCAAAAGTTGCAAGAGATTG+TGG 0.507409 3_1:+66589414 Msa0369380:CDS
GAGTCGATTGAGGTTGAGAC+GGG 0.511237 3_1:+66586837 None:intergenic
TAGATAGTGCAAAGGGTGGC+AGG 0.516369 3_1:+66589747 Msa0369380:CDS
AGAGCCTGTTGGAGTATTTG+TGG 0.521575 3_1:+66589440 Msa0369380:CDS
ATCAAATCTTGAGTTTGTGC+AGG 0.523243 3_1:+66589500 Msa0369380:CDS
AAGACTAGACTACCTGGAAT+CGG 0.524029 3_1:-66588885 None:intergenic
AAATGTTTCATGTTCATCAA+AGG 0.525170 3_1:+66589239 Msa0369380:CDS
ATCAGCTAAAGATGCTGCTA+TGG 0.526392 3_1:+66589305 Msa0369380:CDS
GCTTCATGGATCTGGTTCGC+GGG 0.535795 3_1:+66589604 Msa0369380:intron
GCATGAGAATATTGTAATGC+TGG 0.542730 3_1:+66590219 Msa0369380:three_prime_UTR
GGCTCCCATCAGCATTTGCA+TGG 0.555209 3_1:-66589673 None:intergenic
CTACTGACATCCACTCCTCC+AGG 0.559568 3_1:-66589992 None:intergenic
GTTCTCCATGCAAATGCTGA+TGG 0.559769 3_1:+66589668 Msa0369380:CDS
AAATTAGAAGCAAATATGGT+TGG 0.569037 3_1:+66589912 Msa0369380:CDS
TAGTCTCAAACCTGGAGGAG+TGG 0.574489 3_1:+66589982 Msa0369380:CDS
AAACCTTTGGTTAAGATGTG+TGG 0.574556 3_1:+66589276 Msa0369380:intron
GATTGTGGAGCAGAGCCTGT+TGG 0.580954 3_1:+66589429 Msa0369380:CDS
AACAGAGTTAGAGTCGATTG+AGG 0.589202 3_1:+66586827 None:intergenic
ATGGTTGGCTCTTGGCAGGA+GGG 0.589722 3_1:+66589927 Msa0369380:CDS
TTTGTACAGGTTCAACAACT+GGG 0.593913 3_1:+66588823 Msa0369380:intron
AGAGTCGATTGAGGTTGAGA+CGG 0.598456 3_1:+66586836 None:intergenic
AGAATGTACTGCATCCATGA+AGG 0.601091 3_1:-66590065 None:intergenic
ACTTTATTGGTATGATCGTG+TGG 0.601436 3_1:+66589346 Msa0369380:CDS
TGCATCAGATGGCATTCAGA+AGG 0.604378 3_1:+66590024 Msa0369380:CDS
TATGGTTGGCTCTTGGCAGG+AGG 0.607292 3_1:+66589926 Msa0369380:CDS
TTCTCCATGCAAATGCTGAT+GGG 0.608881 3_1:+66589669 Msa0369380:CDS
GTTCTGGTAGATAGTGCAAA+GGG 0.610316 3_1:+66589740 Msa0369380:CDS
AGCGGCATATGTGCATCAGA+TGG 0.611930 3_1:+66590013 Msa0369380:CDS
AGCTAAAGATGCTGCTATGG+CGG 0.622801 3_1:+66589308 Msa0369380:CDS
GCTTTGTCTAGTCTCAAACC+TGG 0.631502 3_1:+66589974 Msa0369380:CDS
GGTTCTGGTAGATAGTGCAA+AGG 0.632272 3_1:+66589739 Msa0369380:CDS
ACCAGAACCCAATCAACTAG+AGG 0.654201 3_1:-66589725 None:intergenic
CAATCCTGAGAATGTTCGTG+AGG 0.659098 3_1:+66589952 Msa0369380:CDS
GGAGGAGTGGATGTCAGTAG+CGG 0.679932 3_1:+66589995 Msa0369380:CDS
CTGGTAGATAGTGCAAAGGG+TGG 0.687302 3_1:+66589743 Msa0369380:CDS
TTGTCTAGTCTCAAACCTGG+AGG 0.687383 3_1:+66589977 Msa0369380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTAAATATAATTTTTGT+AGG + chr3_1:66589135-66589154 Msa0369380:intron 10.0%
!! AATTAAGAGAAATTATTTAC+TGG + chr3_1:66587080-66587099 Msa0369380:intron 15.0%
!!! TCATTTTCTCAAATTATTAA+CGG - chr3_1:66587190-66587209 None:intergenic 15.0%
!! ATAGTCATAATAAAAGAAAT+TGG - chr3_1:66588026-66588045 None:intergenic 15.0%
!!! CATTTTTATGATGTTATTAT+TGG + chr3_1:66588725-66588744 Msa0369380:intron 15.0%
!!! AATTTTTGGTAATTTAAACT+GGG - chr3_1:66589897-66589916 None:intergenic 15.0%
!!! TAATTTTTGGTAATTTAAAC+TGG - chr3_1:66589898-66589917 None:intergenic 15.0%
!!! AATTATTTGTTAATGCAGTT+AGG - chr3_1:66587628-66587647 None:intergenic 20.0%
!!! AAAGATTAGTTAATGCATTT+AGG - chr3_1:66588675-66588694 None:intergenic 20.0%
!! TTGAAGAACATAAAAATTCA+CGG - chr3_1:66588754-66588773 None:intergenic 20.0%
! ATGAAATTCATCAAACAAGT+GGG - chr3_1:66586988-66587007 None:intergenic 25.0%
! TATGAAATTCATCAAACAAG+TGG - chr3_1:66586989-66587008 None:intergenic 25.0%
! CAAATCATAGTGATTATCAT+TGG - chr3_1:66587392-66587411 None:intergenic 25.0%
!! TGATAATCACTATGATTTGT+AGG + chr3_1:66587393-66587412 Msa0369380:intron 25.0%
! AAACTGAATAGAACAAACTT+GGG - chr3_1:66587430-66587449 None:intergenic 25.0%
! AAAACTGAATAGAACAAACT+TGG - chr3_1:66587431-66587450 None:intergenic 25.0%
! TGTATAAAGCATAAACTCAA+TGG - chr3_1:66588353-66588372 None:intergenic 25.0%
! GCTTTATACACATAATTATG+AGG + chr3_1:66588363-66588382 Msa0369380:intron 25.0%
! TCTTGATTAGGATATCTTTA+TGG - chr3_1:66588550-66588569 None:intergenic 25.0%
!! AAAAGAAAACATAACTTGCA+AGG - chr3_1:66588805-66588824 None:intergenic 25.0%
!! GTTATGTTTTCTTTTTGTAC+AGG + chr3_1:66588810-66588829 Msa0369380:intron 25.0%
!! ATAATTTTTGTAGGTTTGAG+AGG + chr3_1:66589144-66589163 Msa0369380:intron 25.0%
!!! CAATTTTCTAGCATAAGATT+CGG + chr3_1:66589177-66589196 Msa0369380:CDS 25.0%
! AAATGTTTCATGTTCATCAA+AGG + chr3_1:66589239-66589258 Msa0369380:CDS 25.0%
!! CCATATTTGCTTCTAATTTT+TGG - chr3_1:66589911-66589930 None:intergenic 25.0%
! CCAAAAATTAGAAGCAAATA+TGG + chr3_1:66589908-66589927 Msa0369380:CDS 25.0%
! AAATTAGAAGCAAATATGGT+TGG + chr3_1:66589912-66589931 Msa0369380:CDS 25.0%
! TTGAGGTTCACAATAATTTA+AGG - chr3_1:66590107-66590126 None:intergenic 25.0%
!!! AAATGGACTAGAAAACAAAA+TGG - chr3_1:66590160-66590179 None:intergenic 25.0%
! TCTAAAGAAGAAAGAACTTT+GGG - chr3_1:66590188-66590207 None:intergenic 25.0%
TGAAATTCATCAAACAAGTG+GGG - chr3_1:66586987-66587006 None:intergenic 30.0%
TTGAATGTAATCACATGTGT+TGG + chr3_1:66587215-66587234 Msa0369380:intron 30.0%
! TTATCATTGGCTGAAATGAA+GGG - chr3_1:66587379-66587398 None:intergenic 30.0%
! ATTATCATTGGCTGAAATGA+AGG - chr3_1:66587380-66587399 None:intergenic 30.0%
AACTGAATAGAACAAACTTG+GGG - chr3_1:66587429-66587448 None:intergenic 30.0%
TTGTTAATGCAGTTAGGATA+CGG - chr3_1:66587622-66587641 None:intergenic 30.0%
GATAATTCAACAACAGATTG+CGG - chr3_1:66587812-66587831 None:intergenic 30.0%
! ATTTTCCTCGGAAGAAAATA+TGG - chr3_1:66588053-66588072 None:intergenic 30.0%
ATAAATAGAAGGTTAACTGC+AGG - chr3_1:66588083-66588102 None:intergenic 30.0%
CACTTTAAGCTACTTGATAT+TGG + chr3_1:66588161-66588180 Msa0369380:intron 30.0%
AAGATTAACTTCTGGTATCA+TGG - chr3_1:66588290-66588309 None:intergenic 30.0%
AAGCATTAGCATACAATAAG+AGG - chr3_1:66588422-66588441 None:intergenic 30.0%
TGATTTCCATGCTAAGAAAT+TGG + chr3_1:66588441-66588460 Msa0369380:intron 30.0%
AGCTCATTCTTGTTCAAATT+CGG - chr3_1:66588472-66588491 None:intergenic 30.0%
TTTGAACAAGAATGAGCTTA+AGG + chr3_1:66588474-66588493 Msa0369380:intron 30.0%
TAGTTAATGCATTTAGGAGT+CGG - chr3_1:66588669-66588688 None:intergenic 30.0%
CACAAGAACAATAATGTACA+TGG - chr3_1:66588781-66588800 None:intergenic 30.0%
TAAATAAAGACTAGACTACC+TGG - chr3_1:66588894-66588913 None:intergenic 30.0%
! TGGTATATGTCTCAATTTTC+AGG + chr3_1:66588935-66588954 Msa0369380:intron 30.0%
!! TGTATTGTTTGAAAGCATCA+TGG + chr3_1:66589009-66589028 Msa0369380:intron 30.0%
GCATCAAATTTCTAAGTACA+AGG + chr3_1:66589100-66589119 Msa0369380:intron 30.0%
TTGCAGGAAATTTCATACTT+TGG - chr3_1:66589204-66589223 None:intergenic 30.0%
ACTTGAAAAGAGTAAACCTT+TGG + chr3_1:66589263-66589282 Msa0369380:CDS 30.0%
! GATTTTCCTGAATCAAAGAT+GGG - chr3_1:66589637-66589656 None:intergenic 30.0%
CATCAGGAATTGTGTTTAAA+AGG - chr3_1:66589697-66589716 None:intergenic 30.0%
!!! AATGTTTTAGAACTCATGAG+AGG + chr3_1:66589842-66589861 Msa0369380:intron 30.0%
ATTATTGTGAACCTCAAGAA+AGG + chr3_1:66590110-66590129 Msa0369380:three_prime_UTR 30.0%
TTACAAAATCACCTTTCTTG+AGG - chr3_1:66590124-66590143 None:intergenic 30.0%
! AAGAACTTTGGGAATACAAA+TGG - chr3_1:66590177-66590196 None:intergenic 30.0%
GTCTAAAGAAGAAAGAACTT+TGG - chr3_1:66590189-66590208 None:intergenic 30.0%
!!! TCTTCTTTAGACTGCTTTTT+AGG + chr3_1:66590197-66590216 Msa0369380:three_prime_UTR 30.0%
CTGAGAACATTGTGAAACTT+TGG - chr3_1:66586901-66586920 None:intergenic 35.0%
CAAAGTTTCACAATGTTCTC+AGG + chr3_1:66586899-66586918 Msa0369380:exon 35.0%
CGCGAAGAGTAAAATGAAAT+GGG - chr3_1:66586937-66586956 None:intergenic 35.0%
CACAATAAACAATTGCTCAG+GGG - chr3_1:66587345-66587364 None:intergenic 35.0%
GCACAATAAACAATTGCTCA+GGG - chr3_1:66587346-66587365 None:intergenic 35.0%
AGCACAATAAACAATTGCTC+AGG - chr3_1:66587347-66587366 None:intergenic 35.0%
! GCAGAGCTATTTCACTATAA+AGG - chr3_1:66587480-66587499 None:intergenic 35.0%
AAGACAGACACTACGATATT+AGG - chr3_1:66587502-66587521 None:intergenic 35.0%
TCAGGAGCTATTAATGTGAA+GGG - chr3_1:66587662-66587681 None:intergenic 35.0%
!! TAACCTCTTTGAGATTGACT+CGG + chr3_1:66587712-66587731 Msa0369380:intron 35.0%
! TTTTGTCGCAAGTGAAGTAT+GGG + chr3_1:66587866-66587885 Msa0369380:intron 35.0%
TGTTATCACGCTAGACATTT+AGG + chr3_1:66587915-66587934 Msa0369380:intron 35.0%
GTTATCACGCTAGACATTTA+GGG + chr3_1:66587916-66587935 Msa0369380:intron 35.0%
TTATCACGCTAGACATTTAG+GGG + chr3_1:66587917-66587936 Msa0369380:intron 35.0%
! TTTCCAGATCTATAGCTTTG+AGG - chr3_1:66588000-66588019 None:intergenic 35.0%
GGCTTATGCAGATAAATAGA+AGG - chr3_1:66588094-66588113 None:intergenic 35.0%
TAGCTTAAAGTGCAACTCAA+GGG - chr3_1:66588153-66588172 None:intergenic 35.0%
!! AAGCTACTTGATATTGGCTT+TGG + chr3_1:66588167-66588186 Msa0369380:intron 35.0%
!! AGCTACTTGATATTGGCTTT+GGG + chr3_1:66588168-66588187 Msa0369380:intron 35.0%
GTGATCATGCGTATCAAATT+CGG - chr3_1:66588224-66588243 None:intergenic 35.0%
TCTCTCTTCTTCTCTTGATT+AGG - chr3_1:66588562-66588581 None:intergenic 35.0%
AGAGAAGAAGAGAGAATTTG+TGG + chr3_1:66588567-66588586 Msa0369380:intron 35.0%
GTAATGTTTACCAAGCACAT+TGG - chr3_1:66588597-66588616 None:intergenic 35.0%
ACAGATCTGAGTGAGATATA+TGG + chr3_1:66588615-66588634 Msa0369380:intron 35.0%
! TTTTGTACAGGTTCAACAAC+TGG + chr3_1:66588822-66588841 Msa0369380:intron 35.0%
TTTGTACAGGTTCAACAACT+GGG + chr3_1:66588823-66588842 Msa0369380:intron 35.0%
TGAGTATATTGTCTCTCTTC+TGG + chr3_1:66588915-66588934 Msa0369380:intron 35.0%
AAACCTACATGAGGAATAAG+TGG - chr3_1:66588972-66588991 None:intergenic 35.0%
CATGAAACTAAACCTACATG+AGG - chr3_1:66588981-66589000 None:intergenic 35.0%
CGAGGCTTTCATTTAAATAG+TGG - chr3_1:66589059-66589078 None:intergenic 35.0%
TTTAAATGAAAGCCTCGTGA+AGG + chr3_1:66589062-66589081 Msa0369380:intron 35.0%
TTAAATGAAAGCCTCGTGAA+GGG + chr3_1:66589063-66589082 Msa0369380:intron 35.0%
TTCCTGCAAACTTAATGAGT+TGG + chr3_1:66589215-66589234 Msa0369380:CDS 35.0%
AAACCTTTGGTTAAGATGTG+TGG + chr3_1:66589276-66589295 Msa0369380:intron 35.0%
! AATAAAGTTTGCTCCAGCTT+CGG - chr3_1:66589334-66589353 None:intergenic 35.0%
ACTTTATTGGTATGATCGTG+TGG + chr3_1:66589346-66589365 Msa0369380:CDS 35.0%
!!! GAAACAGAACGTTTTGAGTT+TGG - chr3_1:66589372-66589391 None:intergenic 35.0%
TGTTTCACTTTCTGTTGCAA+AGG + chr3_1:66589386-66589405 Msa0369380:CDS 35.0%
TCAAAAGTTGCAAGAGATTG+TGG + chr3_1:66589414-66589433 Msa0369380:CDS 35.0%
ATCAAATCTTGAGTTTGTGC+AGG + chr3_1:66589500-66589519 Msa0369380:CDS 35.0%
GTTGAACATGCATAAAAGTC+AGG - chr3_1:66589536-66589555 None:intergenic 35.0%
TTCAACGACAGTTAAATGCT+TGG + chr3_1:66589550-66589569 Msa0369380:intron 35.0%
! CGATTTTCCTGAATCAAAGA+TGG - chr3_1:66589638-66589657 None:intergenic 35.0%
ATCAAGAATAGCTTCCTTCA+TGG + chr3_1:66590051-66590070 Msa0369380:CDS 35.0%
GCATGAGAATATTGTAATGC+TGG + chr3_1:66590219-66590238 Msa0369380:three_prime_UTR 35.0%
GCTGGCTGATATATCATATA+TGG + chr3_1:66590237-66590256 Msa0369380:three_prime_UTR 35.0%
GCGCGAAGAGTAAAATGAAA+TGG - chr3_1:66586938-66586957 None:intergenic 40.0%
ATTTCGTTATCGACAGGAGT+CGG - chr3_1:66587250-66587269 None:intergenic 40.0%
! AAGGCTATTTCGTTATCGAC+AGG - chr3_1:66587256-66587275 None:intergenic 40.0%
GTCAGGAGCTATTAATGTGA+AGG - chr3_1:66587663-66587682 None:intergenic 40.0%
ACTTCACCAACTTGATCTTG+AGG - chr3_1:66587692-66587711 None:intergenic 40.0%
TATCCGAGTCAATCTCAAAG+AGG - chr3_1:66587718-66587737 None:intergenic 40.0%
TTCACTTGCGACAAAACAGT+TGG - chr3_1:66587862-66587881 None:intergenic 40.0%
! GTTTTGTCGCAAGTGAAGTA+TGG + chr3_1:66587865-66587884 Msa0369380:intron 40.0%
TTTGTCGCAAGTGAAGTATG+GGG + chr3_1:66587867-66587886 Msa0369380:intron 40.0%
TTGCCTCAAAGCTATAGATC+TGG + chr3_1:66587994-66588013 Msa0369380:intron 40.0%
TTCCTCGGAAGAAAATATGG+TGG - chr3_1:66588050-66588069 None:intergenic 40.0%
!! GCAGGCTATTTCATTTTCCT+CGG - chr3_1:66588065-66588084 None:intergenic 40.0%
TGCGTATTGTGATTTGACTG+GGG - chr3_1:66588115-66588134 None:intergenic 40.0%
GTGCGTATTGTGATTTGACT+GGG - chr3_1:66588116-66588135 None:intergenic 40.0%
! CTCAAGGGTGTGAAGAAAAT+TGG - chr3_1:66588138-66588157 None:intergenic 40.0%
GTAGCTTAAAGTGCAACTCA+AGG - chr3_1:66588154-66588173 None:intergenic 40.0%
!! GATATTGGCTTTGGGTTAAG+AGG + chr3_1:66588176-66588195 Msa0369380:intron 40.0%
TATCAAATTCGGCAGAAGCT+AGG - chr3_1:66588213-66588232 None:intergenic 40.0%
GGATCAGCAAGATTAACTTC+TGG - chr3_1:66588298-66588317 None:intergenic 40.0%
TAGTTTCGTGTAGTTCAGCT+GGG - chr3_1:66588324-66588343 None:intergenic 40.0%
TTAGTTTCGTGTAGTTCAGC+TGG - chr3_1:66588325-66588344 None:intergenic 40.0%
! TGAGGAACTGCATTTTCACT+TGG + chr3_1:66588381-66588400 Msa0369380:intron 40.0%
GTGAAGCCAATTTCTTAGCA+TGG - chr3_1:66588450-66588469 None:intergenic 40.0%
ATAGCTTCAGCCTCTATTGA+GGG + chr3_1:66588502-66588521 Msa0369380:intron 40.0%
TTGTGGTAAACCAATGTGCT+TGG + chr3_1:66588584-66588603 Msa0369380:intron 40.0%
GCTAGTAGCTACATGAATTG+TGG - chr3_1:66588706-66588725 None:intergenic 40.0%
TTCAACAACTGGGAGTTACT+TGG + chr3_1:66588833-66588852 Msa0369380:CDS 40.0%
AAGACTAGACTACCTGGAAT+CGG - chr3_1:66588888-66588907 None:intergenic 40.0%
GTACCACTTATTCCTCATGT+AGG + chr3_1:66588966-66588985 Msa0369380:intron 40.0%
TGCCAACTCATTAAGTTTGC+AGG - chr3_1:66589220-66589239 None:intergenic 40.0%
ATGCCACACATCTTAACCAA+AGG - chr3_1:66589282-66589301 None:intergenic 40.0%
ATCAGCTAAAGATGCTGCTA+TGG + chr3_1:66589305-66589324 Msa0369380:CDS 40.0%
GAAGCTGGAGCAAACTTTAT+TGG + chr3_1:66589333-66589352 Msa0369380:CDS 40.0%
TCATCCACAAATACTCCAAC+AGG - chr3_1:66589447-66589466 None:intergenic 40.0%
GTTTGAACAATGCAGCTTCA+TGG + chr3_1:66589590-66589609 Msa0369380:intron 40.0%
AGCTTTCCCATCTTTGATTC+AGG + chr3_1:66589628-66589647 Msa0369380:CDS 40.0%
TTCTCCATGCAAATGCTGAT+GGG + chr3_1:66589669-66589688 Msa0369380:CDS 40.0%
!! AAGAGTGTCCTCTAGTTGAT+TGG + chr3_1:66589717-66589736 Msa0369380:CDS 40.0%
! AGAGTGTCCTCTAGTTGATT+GGG + chr3_1:66589718-66589737 Msa0369380:CDS 40.0%
GTTCTGGTAGATAGTGCAAA+GGG + chr3_1:66589740-66589759 Msa0369380:CDS 40.0%
! AAGCAAATATGGTTGGCTCT+TGG + chr3_1:66589919-66589938 Msa0369380:CDS 40.0%
AGAATGTACTGCATCCATGA+AGG - chr3_1:66590068-66590087 None:intergenic 40.0%
TAGCCTTCGATCAGAAATGC+TGG + chr3_1:66587269-66587288 Msa0369380:intron 45.0%
ACACCAGCATTTCTGATCGA+AGG - chr3_1:66587275-66587294 None:intergenic 45.0%
TCTCCACCTCAAGATCAAGT+TGG + chr3_1:66587683-66587702 Msa0369380:intron 45.0%
TCACCAACTTGATCTTGAGG+TGG - chr3_1:66587689-66587708 None:intergenic 45.0%
ACGCTAGACATTTAGGGGTT+TGG + chr3_1:66587922-66587941 Msa0369380:intron 45.0%
! TGCCACCATATTTTCTTCCG+AGG + chr3_1:66588045-66588064 Msa0369380:intron 45.0%
GGTGCGTATTGTGATTTGAC+TGG - chr3_1:66588117-66588136 None:intergenic 45.0%
CTCTCACTGTTTCCATGGTA+AGG - chr3_1:66588248-66588267 None:intergenic 45.0%
CTTACCATGGAAACAGTGAG+AGG + chr3_1:66588246-66588265 Msa0369380:intron 45.0%
AGAACCTCTCACTGTTTCCA+TGG - chr3_1:66588253-66588272 None:intergenic 45.0%
ATGGAAACAGTGAGAGGTTC+TGG + chr3_1:66588252-66588271 Msa0369380:intron 45.0%
! GCATTTTCACTTGGCGAAGA+AGG + chr3_1:66588390-66588409 Msa0369380:intron 45.0%
CATAGCTTCAGCCTCTATTG+AGG + chr3_1:66588501-66588520 Msa0369380:intron 45.0%
AGAGTTCAGACCCTCAATAG+AGG - chr3_1:66588515-66588534 None:intergenic 45.0%
! TTCCACAAAAGACCGATTCC+AGG + chr3_1:66588873-66588892 Msa0369380:CDS 45.0%
! TACCTGGAATCGGTCTTTTG+TGG - chr3_1:66588878-66588897 None:intergenic 45.0%
AGCTAAAGATGCTGCTATGG+CGG + chr3_1:66589308-66589327 Msa0369380:CDS 45.0%
! AGAGCCTGTTGGAGTATTTG+TGG + chr3_1:66589440-66589459 Msa0369380:CDS 45.0%
ACAATGCAGCTTCATGGATC+TGG + chr3_1:66589596-66589615 Msa0369380:intron 45.0%
GTTCTCCATGCAAATGCTGA+TGG + chr3_1:66589668-66589687 Msa0369380:CDS 45.0%
ACTAGAGGACACTCTTCATC+AGG - chr3_1:66589713-66589732 None:intergenic 45.0%
TCCTCTAGTTGATTGGGTTC+TGG + chr3_1:66589724-66589743 Msa0369380:CDS 45.0%
ACCAGAACCCAATCAACTAG+AGG - chr3_1:66589728-66589747 None:intergenic 45.0%
! GGTTCTGGTAGATAGTGCAA+AGG + chr3_1:66589739-66589758 Msa0369380:CDS 45.0%
TCATGAGAGGTCTTTGCAGT+GGG + chr3_1:66589855-66589874 Msa0369380:intron 45.0%
!! CAGTGGGGAAGCATTTGATT+GGG + chr3_1:66589871-66589890 Msa0369380:intron 45.0%
! AAATATGGTTGGCTCTTGGC+AGG + chr3_1:66589923-66589942 Msa0369380:CDS 45.0%
CAATCCTGAGAATGTTCGTG+AGG + chr3_1:66589952-66589971 Msa0369380:CDS 45.0%
AAAGCCTCACGAACATTCTC+AGG - chr3_1:66589959-66589978 None:intergenic 45.0%
GCTTTGTCTAGTCTCAAACC+TGG + chr3_1:66589974-66589993 Msa0369380:CDS 45.0%
TTGTCTAGTCTCAAACCTGG+AGG + chr3_1:66589977-66589996 Msa0369380:CDS 45.0%
TGCATCAGATGGCATTCAGA+AGG + chr3_1:66590024-66590043 Msa0369380:CDS 45.0%
!! TTATAATTAAAAAAAATAGT+TGG - chr3_1:66587581-66587600 None:intergenic 5.0%
AAGTGGGGTGCACTACTTTC+AGG - chr3_1:66586972-66586991 None:intergenic 50.0%
TAAGTGTCTCGTGTCTGCGT+CGG - chr3_1:66587157-66587176 None:intergenic 50.0%
TGATCTTGAGGTGGAGAGTC+AGG - chr3_1:66587680-66587699 None:intergenic 50.0%
GGTTTGGCAGCTAGAACACA+AGG + chr3_1:66587938-66587957 Msa0369380:intron 50.0%
!! TGGCTTTGGGTTAAGAGGCA+AGG + chr3_1:66588181-66588200 Msa0369380:intron 50.0%
CGCATGATCACACCTTACCA+TGG + chr3_1:66588233-66588252 Msa0369380:intron 50.0%
TCGTGTAGTTCAGCTGGGAT+GGG - chr3_1:66588319-66588338 None:intergenic 50.0%
TTCGTGTAGTTCAGCTGGGA+TGG - chr3_1:66588320-66588339 None:intergenic 50.0%
! CGGTCTTTTGTGGAAGTTCG+TGG - chr3_1:66588868-66588887 None:intergenic 50.0%
TTTCCTCTCATCCCTTCACG+AGG - chr3_1:66589077-66589096 None:intergenic 50.0%
! AGCTTCATGGATCTGGTTCG+CGG + chr3_1:66589603-66589622 Msa0369380:intron 50.0%
CTGGTAGATAGTGCAAAGGG+TGG + chr3_1:66589743-66589762 Msa0369380:CDS 50.0%
TAGATAGTGCAAAGGGTGGC+AGG + chr3_1:66589747-66589766 Msa0369380:CDS 50.0%
AGGGTGGCAGGTAAAGACAT+AGG + chr3_1:66589759-66589778 Msa0369380:intron 50.0%
CTCATGAGAGGTCTTTGCAG+TGG + chr3_1:66589854-66589873 Msa0369380:intron 50.0%
CATGAGAGGTCTTTGCAGTG+GGG + chr3_1:66589856-66589875 Msa0369380:intron 50.0%
!! GCAGTGGGGAAGCATTTGAT+TGG + chr3_1:66589870-66589889 Msa0369380:intron 50.0%
TAGTCTCAAACCTGGAGGAG+TGG + chr3_1:66589982-66590001 Msa0369380:CDS 50.0%
AGCGGCATATGTGCATCAGA+TGG + chr3_1:66590013-66590032 Msa0369380:CDS 50.0%
ACGGGCTTTGCGACGAAAGT+GGG + chr3_1:66586855-66586874 Msa0369380:intron 55.0%
! GACGAAAGTGGGCTCTGTAG+TGG + chr3_1:66586866-66586885 Msa0369380:intron 55.0%
AAGCCTCGTGAAGGGATGAG+AGG + chr3_1:66589071-66589090 Msa0369380:intron 55.0%
GATTGTGGAGCAGAGCCTGT+TGG + chr3_1:66589429-66589448 Msa0369380:CDS 55.0%
! GCTTCATGGATCTGGTTCGC+GGG + chr3_1:66589604-66589623 Msa0369380:intron 55.0%
GGCTCCCATCAGCATTTGCA+TGG - chr3_1:66589676-66589695 None:intergenic 55.0%
! TATGGTTGGCTCTTGGCAGG+AGG + chr3_1:66589926-66589945 Msa0369380:CDS 55.0%
! ATGGTTGGCTCTTGGCAGGA+GGG + chr3_1:66589927-66589946 Msa0369380:CDS 55.0%
CTACTGACATCCACTCCTCC+AGG - chr3_1:66589995-66590014 None:intergenic 55.0%
GGAGGAGTGGATGTCAGTAG+CGG + chr3_1:66589995-66590014 Msa0369380:CDS 55.0%
! GACGGGCTTTGCGACGAAAG+TGG + chr3_1:66586854-66586873 Msa0369380:intron 60.0%
GCTGCTATGGCGGCCGAAGC+TGG + chr3_1:66589318-66589337 Msa0369380:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 66586842 66590296 66586842 ID=Msa0369380;Name=Msa0369380
chr3_1 mRNA 66586842 66590296 66586842 ID=Msa0369380-mRNA-1;Parent=Msa0369380;Name=Msa0369380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=43|0.83|0.71|1|0.5|0.57|7|197|273
chr3_1 exon 66586842 66586864 66586842 ID=Msa0369380-mRNA-1:exon:13555;Parent=Msa0369380-mRNA-1
chr3_1 exon 66586891 66586920 66586891 ID=Msa0369380-mRNA-1:exon:13556;Parent=Msa0369380-mRNA-1
chr3_1 exon 66588832 66588894 66588832 ID=Msa0369380-mRNA-1:exon:13557;Parent=Msa0369380-mRNA-1
chr3_1 exon 66589157 66589284 66589157 ID=Msa0369380-mRNA-1:exon:13558;Parent=Msa0369380-mRNA-1
chr3_1 exon 66589291 66589521 66589291 ID=Msa0369380-mRNA-1:exon:13559;Parent=Msa0369380-mRNA-1
chr3_1 exon 66589605 66589768 66589605 ID=Msa0369380-mRNA-1:exon:13560;Parent=Msa0369380-mRNA-1
chr3_1 exon 66589874 66590296 66589874 ID=Msa0369380-mRNA-1:exon:13561;Parent=Msa0369380-mRNA-1
chr3_1 five_prime_UTR 66586842 66586864 66586842 ID=Msa0369380-mRNA-1:five_prime_utr;Parent=Msa0369380-mRNA-1
chr3_1 five_prime_UTR 66586891 66586910 66586891 ID=Msa0369380-mRNA-1:five_prime_utr;Parent=Msa0369380-mRNA-1
chr3_1 CDS 66586911 66586920 66586911 ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1
chr3_1 CDS 66588832 66588894 66588832 ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1
chr3_1 CDS 66589157 66589284 66589157 ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1
chr3_1 CDS 66589291 66589521 66589291 ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1
chr3_1 CDS 66589605 66589768 66589605 ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1
chr3_1 CDS 66589874 66590099 66589874 ID=Msa0369380-mRNA-1:cds;Parent=Msa0369380-mRNA-1
chr3_1 three_prime_UTR 66590100 66590296 66590100 ID=Msa0369380-mRNA-1:three_prime_utr;Parent=Msa0369380-mRNA-1
Gene Sequence

>Msa0369380

ATGTTCTCAGGTTCAACAACTGGGAGTTACTTGGAACTTAGAGCCACGAACTTCCACAAAAGACCGATTCCAGGTTTGAGAGGAAATAAGCTTCAATTTTCTAGCATAAGATTCGGTCCAAAGTATGAAATTTCCTGCAAACTTAATGAGTTGGCAAATGTTTCATGTTCATCAAAGGAACTTGAAAAGAGTAAACCTTTGATGTGTGGCATTACATCAGCTAAAGATGCTGCTATGGCGGCCGAAGCTGGAGCAAACTTTATTGGTATGATCGTGTGGCCAAACTCAAAACGTTCTGTTTCACTTTCTGTTGCAAAGGAGATATCAAAAGTTGCAAGAGATTGTGGAGCAGAGCCTGTTGGAGTATTTGTGGATGATGATGCAGAAACAATATTAAGAGCTTCTGATGCATCAAATCTTGAGTTTGTGCAGCTTCATGGATCTGGTTCGCGGGCAGCTTTCCCATCTTTGATTCAGGAAAATCGTGTAATATATGTTCTCCATGCAAATGCTGATGGGAGCCTTTTAAACACAATTCCTGATGAAGAGTGTCCTCTAGTTGATTGGGTTCTGGTAGATAGTGCAAAGGGTGGCAGTGGGGAAGCATTTGATTGGGCCCAGTTTAAATTACCAAAAATTAGAAGCAAATATGGTTGGCTCTTGGCAGGAGGGATCAATCCTGAGAATGTTCGTGAGGCTTTGTCTAGTCTCAAACCTGGAGGAGTGGATGTCAGTAGCGGCATATGTGCATCAGATGGCATTCAGAAGGATCAATCAAGAATAGCTTCCTTCATGGATGCAGTACATTCTGTTCAGTACTGA

Protein sequence

>Msa0369380

MFSGSTTGSYLELRATNFHKRPIPGLRGNKLQFSSIRFGPKYEISCKLNELANVSCSSKELEKSKPLMCGITSAKDAAMAAEAGANFIGMIVWPNSKRSVSLSVAKEISKVARDCGAEPVGVFVDDDAETILRASDASNLEFVQLHGSGSRAAFPSLIQENRVIYVLHANADGSLLNTIPDEECPLVDWVLVDSAKGGSGEAFDWAQFKLPKIRSKYGWLLAGGINPENVREALSSLKPGGVDVSSGICASDGIQKDQSRIASFMDAVHSVQY*