Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416970 | XP_003600972.1 | 98.630 | 146 | 2 | 0 | 1 | 146 | 1 | 146 | 2.00e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416970 | sp|Q8LBW3|LBD12_ARATH | 76.978 | 139 | 26 | 2 | 1 | 135 | 1 | 137 | 2.27e-71 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416970 | G7J2B8 | 98.630 | 146 | 2 | 0 | 1 | 146 | 1 | 146 | 9.57e-103 | 300 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0416970 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0416970 | Msa0509170 | 0.940736 | 1.400274e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416970 | MtrunA17_Chr3g0114061 | 98.630 | 146 | 2 | 0 | 1 | 146 | 1 | 146 | 1.84e-106 | 300 |
| Msa0416970 | MtrunA17_Chr5g0437571 | 72.050 | 161 | 37 | 3 | 1 | 157 | 1 | 157 | 7.80e-80 | 233 |
| Msa0416970 | MtrunA17_Chr3g0106101 | 64.706 | 153 | 41 | 2 | 3 | 142 | 2 | 154 | 1.51e-68 | 205 |
| Msa0416970 | MtrunA17_Chr2g0311601 | 78.302 | 106 | 23 | 0 | 4 | 109 | 9 | 114 | 1.69e-58 | 179 |
| Msa0416970 | MtrunA17_Chr4g0043421 | 74.107 | 112 | 25 | 1 | 2 | 109 | 5 | 116 | 2.06e-56 | 174 |
| Msa0416970 | MtrunA17_Chr4g0030001 | 70.192 | 104 | 30 | 1 | 7 | 109 | 23 | 126 | 1.42e-49 | 157 |
| Msa0416970 | MtrunA17_Chr1g0200201 | 71.287 | 101 | 29 | 0 | 9 | 109 | 73 | 173 | 7.72e-49 | 157 |
| Msa0416970 | MtrunA17_Chr5g0438091 | 67.619 | 105 | 34 | 0 | 4 | 108 | 35 | 139 | 2.83e-48 | 154 |
| Msa0416970 | MtrunA17_Chr3g0129071 | 66.981 | 106 | 35 | 0 | 4 | 109 | 43 | 148 | 3.64e-47 | 153 |
| Msa0416970 | MtrunA17_Chr7g0227511 | 50.667 | 150 | 68 | 2 | 5 | 148 | 8 | 157 | 1.70e-46 | 149 |
| Msa0416970 | MtrunA17_Chr6g0449651 | 50.340 | 147 | 64 | 3 | 3 | 149 | 62 | 199 | 2.90e-46 | 149 |
| Msa0416970 | MtrunA17_Chr3g0117121 | 66.346 | 104 | 35 | 0 | 6 | 109 | 8 | 111 | 3.27e-46 | 149 |
| Msa0416970 | MtrunA17_Chr4g0058651 | 66.019 | 103 | 35 | 0 | 7 | 109 | 10 | 112 | 4.84e-46 | 148 |
| Msa0416970 | MtrunA17_Chr6g0449641 | 52.143 | 140 | 58 | 2 | 5 | 144 | 6 | 136 | 6.94e-46 | 147 |
| Msa0416970 | MtrunA17_Chr3g0115431 | 61.111 | 108 | 42 | 0 | 1 | 108 | 2 | 109 | 4.95e-45 | 147 |
| Msa0416970 | MtrunA17_Chr5g0432451 | 66.038 | 106 | 36 | 0 | 4 | 109 | 39 | 144 | 7.27e-43 | 142 |
| Msa0416970 | MtrunA17_Chr3g0113891 | 63.366 | 101 | 37 | 0 | 5 | 105 | 11 | 111 | 1.13e-42 | 140 |
| Msa0416970 | MtrunA17_Chr3g0097221 | 59.048 | 105 | 43 | 0 | 4 | 108 | 3 | 107 | 1.78e-42 | 142 |
| Msa0416970 | MtrunA17_Chr5g0402611 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 6.20e-42 | 142 |
| Msa0416970 | MtrunA17_Chr5g0437401 | 62.376 | 101 | 38 | 0 | 5 | 105 | 8 | 108 | 1.25e-41 | 137 |
| Msa0416970 | MtrunA17_Chr7g0260971 | 57.143 | 105 | 44 | 1 | 5 | 108 | 11 | 115 | 7.56e-38 | 128 |
| Msa0416970 | MtrunA17_Chr1g0184281 | 51.695 | 118 | 56 | 1 | 8 | 124 | 15 | 132 | 2.28e-37 | 127 |
| Msa0416970 | MtrunA17_Chr8g0353981 | 57.798 | 109 | 46 | 0 | 5 | 113 | 4 | 112 | 2.33e-37 | 127 |
| Msa0416970 | MtrunA17_Chr7g0245871 | 56.863 | 102 | 43 | 1 | 8 | 108 | 27 | 128 | 2.22e-36 | 125 |
| Msa0416970 | MtrunA17_Chr5g0444351 | 51.961 | 102 | 49 | 0 | 9 | 110 | 6 | 107 | 4.06e-36 | 122 |
| Msa0416970 | MtrunA17_Chr7g0225111 | 50.893 | 112 | 54 | 1 | 7 | 118 | 4 | 114 | 4.90e-36 | 120 |
| Msa0416970 | MtrunA17_Chr8g0351721 | 55.556 | 108 | 47 | 1 | 7 | 113 | 17 | 124 | 1.04e-35 | 123 |
| Msa0416970 | MtrunA17_Chr7g0261031 | 43.919 | 148 | 80 | 2 | 1 | 145 | 1 | 148 | 1.45e-35 | 123 |
| Msa0416970 | MtrunA17_Chr1g0184271 | 42.581 | 155 | 80 | 5 | 8 | 157 | 12 | 162 | 5.43e-35 | 122 |
| Msa0416970 | MtrunA17_Chr8g0351701 | 54.369 | 103 | 46 | 1 | 7 | 108 | 22 | 124 | 6.90e-35 | 121 |
| Msa0416970 | MtrunA17_Chr5g0435641 | 40.491 | 163 | 79 | 5 | 7 | 151 | 6 | 168 | 8.57e-34 | 117 |
| Msa0416970 | MtrunA17_Chr6g0460951 | 50.000 | 104 | 51 | 1 | 7 | 109 | 39 | 142 | 1.14e-33 | 118 |
| Msa0416970 | MtrunA17_Chr7g0245861 | 55.208 | 96 | 40 | 2 | 2 | 94 | 6 | 101 | 2.37e-30 | 107 |
| Msa0416970 | MtrunA17_Chr8g0374591 | 42.593 | 108 | 62 | 0 | 1 | 108 | 1 | 108 | 2.73e-30 | 106 |
| Msa0416970 | MtrunA17_Chr8g0374601 | 45.370 | 108 | 59 | 0 | 1 | 108 | 19 | 126 | 1.12e-29 | 109 |
| Msa0416970 | MtrunA17_Chr8g0374581 | 38.926 | 149 | 78 | 3 | 1 | 148 | 1 | 137 | 1.65e-28 | 105 |
| Msa0416970 | MtrunA17_Chr4g0059901 | 37.975 | 158 | 86 | 4 | 1 | 148 | 3 | 158 | 4.84e-27 | 102 |
| Msa0416970 | MtrunA17_Chr6g0460941 | 50.000 | 88 | 43 | 1 | 8 | 94 | 7 | 94 | 5.96e-27 | 97.1 |
| Msa0416970 | MtrunA17_Chr6g0452671 | 40.404 | 99 | 59 | 0 | 3 | 101 | 6 | 104 | 3.49e-26 | 98.2 |
| Msa0416970 | MtrunA17_Chr6g0452691 | 39.416 | 137 | 75 | 4 | 9 | 143 | 10 | 140 | 4.27e-26 | 97.4 |
| Msa0416970 | MtrunA17_Chr2g0330201 | 38.462 | 104 | 64 | 0 | 5 | 108 | 16 | 119 | 8.37e-23 | 91.7 |
| Msa0416970 | MtrunA17_Chr4g0040831 | 42.697 | 89 | 51 | 0 | 9 | 97 | 16 | 104 | 1.84e-22 | 88.6 |
| Msa0416970 | MtrunA17_Chr8g0342351 | 37.500 | 104 | 65 | 0 | 5 | 108 | 9 | 112 | 1.97e-22 | 89.7 |
| Msa0416970 | MtrunA17_Chr6g0452661 | 35.780 | 109 | 68 | 2 | 9 | 115 | 10 | 118 | 2.62e-22 | 89.4 |
| Msa0416970 | MtrunA17_Chr2g0326051 | 61.538 | 65 | 25 | 0 | 53 | 117 | 5 | 69 | 4.37e-22 | 85.5 |
| Msa0416970 | MtrunA17_Chr5g0439111 | 33.117 | 154 | 92 | 5 | 9 | 152 | 10 | 162 | 4.53e-21 | 85.9 |
| Msa0416970 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 7 | 54 | 32 | 79 | 1.33e-19 | 78.2 |
| Msa0416970 | MtrunA17_Chr4g0046201 | 39.080 | 87 | 53 | 0 | 9 | 95 | 7 | 93 | 3.00e-19 | 81.6 |
| Msa0416970 | MtrunA17_Chr4g0055441 | 39.362 | 94 | 52 | 2 | 9 | 97 | 3 | 96 | 7.07e-19 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416970 | AT2G30130.1 | 76.978 | 139 | 26 | 2 | 1 | 135 | 1 | 137 | 2.30e-72 | 216 |
| Msa0416970 | AT1G16530.1 | 67.544 | 114 | 36 | 1 | 3 | 115 | 9 | 122 | 1.08e-52 | 165 |
| Msa0416970 | AT1G07900.1 | 67.925 | 106 | 34 | 0 | 7 | 112 | 32 | 137 | 2.10e-50 | 160 |
| Msa0416970 | AT1G31320.1 | 76.923 | 91 | 21 | 0 | 4 | 94 | 9 | 99 | 4.50e-50 | 158 |
| Msa0416970 | AT2G28500.1 | 66.981 | 106 | 35 | 0 | 7 | 112 | 54 | 159 | 1.41e-49 | 159 |
| Msa0416970 | AT2G30340.1 | 64.151 | 106 | 38 | 0 | 4 | 109 | 48 | 153 | 1.07e-46 | 153 |
| Msa0416970 | AT2G30340.2 | 64.151 | 106 | 38 | 0 | 4 | 109 | 49 | 154 | 1.19e-46 | 153 |
| Msa0416970 | AT3G27650.1 | 62.385 | 109 | 41 | 0 | 1 | 109 | 32 | 140 | 2.30e-46 | 149 |
| Msa0416970 | AT5G63090.4 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 3.58e-46 | 149 |
| Msa0416970 | AT5G63090.3 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 3.58e-46 | 149 |
| Msa0416970 | AT5G63090.2 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 3.58e-46 | 149 |
| Msa0416970 | AT5G63090.1 | 66.990 | 103 | 34 | 0 | 6 | 108 | 9 | 111 | 3.58e-46 | 149 |
| Msa0416970 | AT2G40470.2 | 59.542 | 131 | 51 | 1 | 4 | 132 | 16 | 146 | 5.91e-46 | 149 |
| Msa0416970 | AT2G40470.1 | 59.542 | 131 | 51 | 1 | 4 | 132 | 41 | 171 | 1.09e-45 | 149 |
| Msa0416970 | AT3G26660.1 | 62.264 | 106 | 40 | 0 | 9 | 114 | 6 | 111 | 4.35e-45 | 144 |
| Msa0416970 | AT3G26620.1 | 62.264 | 106 | 40 | 0 | 9 | 114 | 6 | 111 | 5.41e-45 | 144 |
| Msa0416970 | AT2G23660.2 | 56.731 | 104 | 45 | 0 | 6 | 109 | 3 | 106 | 1.21e-42 | 144 |
| Msa0416970 | AT2G23660.3 | 56.731 | 104 | 45 | 0 | 6 | 109 | 3 | 106 | 1.21e-42 | 144 |
| Msa0416970 | AT2G23660.1 | 56.731 | 104 | 45 | 0 | 6 | 109 | 3 | 106 | 1.21e-42 | 144 |
| Msa0416970 | AT3G11090.1 | 56.000 | 125 | 53 | 1 | 5 | 127 | 8 | 132 | 1.93e-42 | 139 |
| Msa0416970 | AT5G66870.1 | 48.980 | 147 | 68 | 2 | 4 | 150 | 3 | 142 | 4.37e-42 | 142 |
| Msa0416970 | AT1G65620.1 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 4.78e-39 | 131 |
| Msa0416970 | AT1G65620.4 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 4.78e-39 | 131 |
| Msa0416970 | AT1G65620.3 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 4.78e-39 | 131 |
| Msa0416970 | AT1G65620.5 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 4.78e-39 | 131 |
| Msa0416970 | AT1G65620.2 | 61.905 | 105 | 40 | 0 | 4 | 108 | 5 | 109 | 4.78e-39 | 131 |
| Msa0416970 | AT4G00210.1 | 54.310 | 116 | 49 | 2 | 1 | 112 | 1 | 116 | 9.88e-38 | 129 |
| Msa0416970 | AT3G03760.1 | 55.769 | 104 | 45 | 1 | 7 | 109 | 50 | 153 | 2.64e-37 | 129 |
| Msa0416970 | AT2G42430.1 | 57.547 | 106 | 44 | 1 | 4 | 108 | 11 | 116 | 3.33e-37 | 128 |
| Msa0416970 | AT2G45410.1 | 56.731 | 104 | 44 | 1 | 11 | 113 | 19 | 122 | 3.81e-35 | 121 |
| Msa0416970 | AT2G42440.1 | 47.761 | 134 | 56 | 4 | 7 | 139 | 6 | 126 | 5.53e-35 | 122 |
| Msa0416970 | AT3G58190.1 | 54.639 | 97 | 43 | 1 | 8 | 103 | 11 | 107 | 1.83e-33 | 117 |
| Msa0416970 | AT2G31310.1 | 50.926 | 108 | 51 | 2 | 1 | 107 | 1 | 107 | 5.81e-33 | 115 |
| Msa0416970 | AT2G45420.1 | 52.427 | 103 | 48 | 1 | 11 | 112 | 40 | 142 | 1.71e-32 | 116 |
| Msa0416970 | AT4G00220.1 | 53.398 | 103 | 47 | 1 | 11 | 112 | 20 | 122 | 3.39e-32 | 114 |
| Msa0416970 | AT3G50510.1 | 43.902 | 123 | 67 | 1 | 6 | 126 | 10 | 132 | 1.14e-30 | 110 |
| Msa0416970 | AT3G50510.2 | 43.902 | 123 | 67 | 1 | 6 | 126 | 10 | 132 | 1.14e-30 | 110 |
| Msa0416970 | AT5G06080.1 | 36.842 | 152 | 84 | 2 | 7 | 157 | 6 | 146 | 1.77e-29 | 106 |
| Msa0416970 | AT5G35900.1 | 38.060 | 134 | 65 | 2 | 9 | 142 | 6 | 121 | 5.94e-26 | 98.2 |
| Msa0416970 | AT1G72980.1 | 41.509 | 106 | 62 | 0 | 3 | 108 | 8 | 113 | 7.02e-25 | 95.5 |
| Msa0416970 | AT3G47870.1 | 37.037 | 108 | 68 | 0 | 1 | 108 | 29 | 136 | 2.32e-24 | 96.7 |
| Msa0416970 | AT3G13850.1 | 35.537 | 121 | 74 | 1 | 9 | 125 | 37 | 157 | 4.95e-24 | 94.7 |
| Msa0416970 | AT1G06280.1 | 49.351 | 77 | 39 | 0 | 9 | 85 | 25 | 101 | 8.95e-21 | 84.7 |
| Msa0416970 | AT4G22700.1 | 35.821 | 134 | 72 | 4 | 9 | 141 | 6 | 126 | 6.19e-18 | 77.0 |
| Msa0416970 | AT2G19820.1 | 37.500 | 96 | 59 | 1 | 7 | 101 | 11 | 106 | 6.45e-17 | 72.8 |
| Msa0416970 | AT5G15060.1 | 40.000 | 80 | 44 | 2 | 3 | 79 | 12 | 90 | 2.35e-14 | 66.2 |
| Msa0416970 | AT1G36000.1 | 29.885 | 87 | 61 | 0 | 8 | 94 | 9 | 95 | 1.76e-12 | 61.2 |
| Msa0416970 | AT3G27940.3 | 36.364 | 66 | 42 | 0 | 7 | 72 | 4 | 69 | 2.07e-11 | 58.9 |
| Msa0416970 | AT3G27940.1 | 36.364 | 66 | 42 | 0 | 7 | 72 | 4 | 69 | 2.07e-11 | 58.9 |
| Msa0416970 | AT3G27940.2 | 36.364 | 66 | 42 | 0 | 7 | 72 | 4 | 69 | 2.07e-11 | 58.9 |
Find 22 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATCATCATGTTTCTTC+TGG | 0.220129 | 3_2:-64067441 | None:intergenic |
| CCTTAGCACAACGGCGTCTA+AGG | 0.285930 | 3_2:-64066627 | None:intergenic |
| GCATCAGCTCTTTGTTGAAT+AGG | 0.314081 | 3_2:-64067277 | None:intergenic |
| AGAGTTAAGGACCCTGTTTA+TGG | 0.329312 | 3_2:+64067331 | Msa0416970:CDS |
| GGATCATGTGAAGGGAAATA+AGG | 0.350330 | 3_2:-64066664 | None:intergenic |
| GCTCCAACACAACCATAAAC+AGG | 0.400328 | 3_2:-64067343 | None:intergenic |
| GCATTTGAAGCTCAGAAACT+TGG | 0.418459 | 3_2:-64067384 | None:intergenic |
| TGAAGCAAATGCAAGAGTTA+AGG | 0.446961 | 3_2:+64067318 | Msa0416970:CDS |
| TGAATTACATTGCTTGAAGA+AGG | 0.450118 | 3_2:-64067532 | None:intergenic |
| GACCCTGTTTATGGTTGTGT+TGG | 0.463653 | 3_2:+64067340 | Msa0416970:CDS |
| GATCATAAGATTTATGATCA+AGG | 0.495019 | 3_2:-64067489 | None:intergenic |
| CCTTAGACGCCGTTGTGCTA+AGG | 0.517412 | 3_2:+64066627 | Msa0416970:CDS |
| GAAGGAAAGTTGAAATACTG+AGG | 0.552181 | 3_2:-64067514 | None:intergenic |
| ATCATAAGATTTATGATCAA+GGG | 0.554510 | 3_2:-64067488 | None:intergenic |
| CAACGTTAGCAAAATGCTCC+AGG | 0.569502 | 3_2:+64066726 | Msa0416970:CDS |
| AAAATTTGCAATAGTTCACA+AGG | 0.586403 | 3_2:+64066690 | Msa0416970:CDS |
| AGGAGTTTGCATGAAGCACA+AGG | 0.592427 | 3_2:-64066607 | None:intergenic |
| GAGTTTGCATGAAGCACAAG+GGG | 0.629954 | 3_2:-64066605 | None:intergenic |
| CTCCAACACAACCATAAACA+GGG | 0.642977 | 3_2:-64067342 | None:intergenic |
| GGAGTTTGCATGAAGCACAA+GGG | 0.671143 | 3_2:-64066606 | None:intergenic |
| AGATACAATCCTTAGCACAA+CGG | 0.718268 | 3_2:-64066636 | None:intergenic |
| GAATTTATTAGAGTCAACTG+TGG | 0.719444 | 3_2:+64067681 | Msa0416970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCATATCATTTAAAAAT+TGG | + | chr3_2:64067043-64067062 | Msa0416970:intron | 15.0% |
| !!! | TCGTTTTTAAAATAGAATAT+TGG | - | chr3_2:64067105-64067124 | None:intergenic | 15.0% |
| !!! | GTTAACTTTTTTTTAAAGAA+AGG | + | chr3_2:64067215-64067234 | Msa0416970:intron | 15.0% |
| !!! | TTTTTTTTAAAGAAAGGAAA+TGG | + | chr3_2:64067221-64067240 | Msa0416970:intron | 15.0% |
| !!! | TTGGATTTTTTTTAATCATT+TGG | + | chr3_2:64067628-64067647 | Msa0416970:intron | 15.0% |
| !! | ATGTCATATCATTTAAAAAT+TGG | + | chr3_2:64067043-64067062 | Msa0416970:intron | 15.0% |
| !!! | TCGTTTTTAAAATAGAATAT+TGG | - | chr3_2:64067105-64067124 | None:intergenic | 15.0% |
| !!! | GTTAACTTTTTTTTAAAGAA+AGG | + | chr3_2:64067215-64067234 | Msa0416970:intron | 15.0% |
| !!! | TTTTTTTTAAAGAAAGGAAA+TGG | + | chr3_2:64067221-64067240 | Msa0416970:intron | 15.0% |
| !!! | TTGGATTTTTTTTAATCATT+TGG | + | chr3_2:64067628-64067647 | Msa0416970:intron | 15.0% |
| !!! | TGAACTATTGCAAATTTTTT+AGG | - | chr3_2:64066688-64066707 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCTTTTTCTTTCA+AGG | - | chr3_2:64066777-64066796 | None:intergenic | 20.0% |
| !!! | AAAACTTCGATTTTAAAATG+TGG | - | chr3_2:64066901-64066920 | None:intergenic | 20.0% |
| !! | AAATGATATGACATTAAACA+TGG | - | chr3_2:64067037-64067056 | None:intergenic | 20.0% |
| !!! | AAAAGTGCAATTTTCTTATT+GGG | + | chr3_2:64067161-64067180 | Msa0416970:intron | 20.0% |
| !! | ATCATAAGATTTATGATCAA+GGG | - | chr3_2:64067491-64067510 | None:intergenic | 20.0% |
| !!! | TGAACTATTGCAAATTTTTT+AGG | - | chr3_2:64066688-64066707 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCTTTTTCTTTCA+AGG | - | chr3_2:64066777-64066796 | None:intergenic | 20.0% |
| !!! | AAAACTTCGATTTTAAAATG+TGG | - | chr3_2:64066901-64066920 | None:intergenic | 20.0% |
| !! | AAATGATATGACATTAAACA+TGG | - | chr3_2:64067037-64067056 | None:intergenic | 20.0% |
| !!! | AAAAGTGCAATTTTCTTATT+GGG | + | chr3_2:64067161-64067180 | Msa0416970:intron | 20.0% |
| !! | ATCATAAGATTTATGATCAA+GGG | - | chr3_2:64067491-64067510 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGGATCATGTGAA+GGG | - | chr3_2:64066675-64066694 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATCATGTGA+AGG | - | chr3_2:64066676-64066695 | None:intergenic | 25.0% |
| ! | AAAATTTGCAATAGTTCACA+AGG | + | chr3_2:64066690-64066709 | Msa0416970:CDS | 25.0% |
| !! | AGAACAAAAGTACAATTAAG+CGG | - | chr3_2:64066849-64066868 | None:intergenic | 25.0% |
| ! | CAGATATTTGTTTCAAAAAG+TGG | - | chr3_2:64067074-64067093 | None:intergenic | 25.0% |
| !!! | CAAAAGTGCAATTTTCTTAT+TGG | + | chr3_2:64067160-64067179 | Msa0416970:intron | 25.0% |
| !! | ATTTCTTGATTTTGCATTAG+AGG | - | chr3_2:64067466-64067485 | None:intergenic | 25.0% |
| ! | GATCATAAGATTTATGATCA+AGG | - | chr3_2:64067492-64067511 | None:intergenic | 25.0% |
| ! | TTGAATGAAAAATGTTCACA+TGG | + | chr3_2:64067603-64067622 | Msa0416970:intron | 25.0% |
| !!! | ATTTTTTAGGATCATGTGAA+GGG | - | chr3_2:64066675-64066694 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATCATGTGA+AGG | - | chr3_2:64066676-64066695 | None:intergenic | 25.0% |
| ! | AAAATTTGCAATAGTTCACA+AGG | + | chr3_2:64066690-64066709 | Msa0416970:CDS | 25.0% |
| !! | AGAACAAAAGTACAATTAAG+CGG | - | chr3_2:64066849-64066868 | None:intergenic | 25.0% |
| ! | CAGATATTTGTTTCAAAAAG+TGG | - | chr3_2:64067074-64067093 | None:intergenic | 25.0% |
| !!! | CAAAAGTGCAATTTTCTTAT+TGG | + | chr3_2:64067160-64067179 | Msa0416970:intron | 25.0% |
| !! | ATTTCTTGATTTTGCATTAG+AGG | - | chr3_2:64067466-64067485 | None:intergenic | 25.0% |
| ! | GATCATAAGATTTATGATCA+AGG | - | chr3_2:64067492-64067511 | None:intergenic | 25.0% |
| ! | TTGAATGAAAAATGTTCACA+TGG | + | chr3_2:64067603-64067622 | Msa0416970:intron | 25.0% |
| !!! | GTATAAGAGAGCGTTATTTT+AGG | + | chr3_2:64066805-64066824 | Msa0416970:intron | 30.0% |
| ! | GAACAAAAGTACAATTAAGC+GGG | - | chr3_2:64066848-64066867 | None:intergenic | 30.0% |
| !!! | TATTGGGTTTTGAGTTTTGA+CGG | + | chr3_2:64067177-64067196 | Msa0416970:intron | 30.0% |
| !!! | TTTTGAGTTTTGACGGTTTT+GGG | + | chr3_2:64067184-64067203 | Msa0416970:intron | 30.0% |
| GACTTATTGTACAATGCTAT+AGG | + | chr3_2:64067249-64067268 | Msa0416970:intron | 30.0% | |
| TGAATTACATTGCTTGAAGA+AGG | - | chr3_2:64067535-64067554 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTTTGATGTGACA+TGG | + | chr3_2:64067576-64067595 | Msa0416970:intron | 30.0% |
| ! | GAAAAATGTTCACATGGTTT+TGG | + | chr3_2:64067609-64067628 | Msa0416970:intron | 30.0% |
| GAATTTATTAGAGTCAACTG+TGG | + | chr3_2:64067681-64067700 | Msa0416970:CDS | 30.0% | |
| !!! | GTATAAGAGAGCGTTATTTT+AGG | + | chr3_2:64066805-64066824 | Msa0416970:intron | 30.0% |
| ! | GAACAAAAGTACAATTAAGC+GGG | - | chr3_2:64066848-64066867 | None:intergenic | 30.0% |
| !!! | TATTGGGTTTTGAGTTTTGA+CGG | + | chr3_2:64067177-64067196 | Msa0416970:intron | 30.0% |
| !!! | TTTTGAGTTTTGACGGTTTT+GGG | + | chr3_2:64067184-64067203 | Msa0416970:intron | 30.0% |
| GACTTATTGTACAATGCTAT+AGG | + | chr3_2:64067249-64067268 | Msa0416970:intron | 30.0% | |
| TGAATTACATTGCTTGAAGA+AGG | - | chr3_2:64067535-64067554 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTTTGATGTGACA+TGG | + | chr3_2:64067576-64067595 | Msa0416970:intron | 30.0% |
| ! | GAAAAATGTTCACATGGTTT+TGG | + | chr3_2:64067609-64067628 | Msa0416970:intron | 30.0% |
| GAATTTATTAGAGTCAACTG+TGG | + | chr3_2:64067681-64067700 | Msa0416970:CDS | 30.0% | |
| AGATACAATCCTTAGCACAA+CGG | - | chr3_2:64066639-64066658 | None:intergenic | 35.0% | |
| ! | GCAATAGTTCACAAGGTTTT+TGG | + | chr3_2:64066697-64066716 | Msa0416970:CDS | 35.0% |
| ! | TATCAAACTCGTTGCAGTTT+TGG | + | chr3_2:64066931-64066950 | Msa0416970:intron | 35.0% |
| TTAGAGCAAAAATCTGGGTT+AGG | - | chr3_2:64066958-64066977 | None:intergenic | 35.0% | |
| ! | AACCCAGATTTTTGCTCTAA+TGG | + | chr3_2:64066958-64066977 | Msa0416970:intron | 35.0% |
| CACCATTAGAGCAAAAATCT+GGG | - | chr3_2:64066963-64066982 | None:intergenic | 35.0% | |
| ATTTGTTTCAAAAAGTGGCG+TGG | - | chr3_2:64067069-64067088 | None:intergenic | 35.0% | |
| !!! | GATGACTATTTTTGTGAACG+CGG | + | chr3_2:64067123-64067142 | Msa0416970:intron | 35.0% |
| !!! | GTTTTGAGTTTTGACGGTTT+TGG | + | chr3_2:64067183-64067202 | Msa0416970:intron | 35.0% |
| TGAAGCAAATGCAAGAGTTA+AGG | + | chr3_2:64067318-64067337 | Msa0416970:CDS | 35.0% | |
| GTTGATCATCATGTTTCTTC+TGG | - | chr3_2:64067444-64067463 | None:intergenic | 35.0% | |
| GAAGGAAAGTTGAAATACTG+AGG | - | chr3_2:64067517-64067536 | None:intergenic | 35.0% | |
| AGATACAATCCTTAGCACAA+CGG | - | chr3_2:64066639-64066658 | None:intergenic | 35.0% | |
| ! | GCAATAGTTCACAAGGTTTT+TGG | + | chr3_2:64066697-64066716 | Msa0416970:CDS | 35.0% |
| ! | TATCAAACTCGTTGCAGTTT+TGG | + | chr3_2:64066931-64066950 | Msa0416970:intron | 35.0% |
| TTAGAGCAAAAATCTGGGTT+AGG | - | chr3_2:64066958-64066977 | None:intergenic | 35.0% | |
| ! | AACCCAGATTTTTGCTCTAA+TGG | + | chr3_2:64066958-64066977 | Msa0416970:intron | 35.0% |
| CACCATTAGAGCAAAAATCT+GGG | - | chr3_2:64066963-64066982 | None:intergenic | 35.0% | |
| ATTTGTTTCAAAAAGTGGCG+TGG | - | chr3_2:64067069-64067088 | None:intergenic | 35.0% | |
| !!! | GATGACTATTTTTGTGAACG+CGG | + | chr3_2:64067123-64067142 | Msa0416970:intron | 35.0% |
| !!! | GTTTTGAGTTTTGACGGTTT+TGG | + | chr3_2:64067183-64067202 | Msa0416970:intron | 35.0% |
| TGAAGCAAATGCAAGAGTTA+AGG | + | chr3_2:64067318-64067337 | Msa0416970:CDS | 35.0% | |
| GTTGATCATCATGTTTCTTC+TGG | - | chr3_2:64067444-64067463 | None:intergenic | 35.0% | |
| GAAGGAAAGTTGAAATACTG+AGG | - | chr3_2:64067517-64067536 | None:intergenic | 35.0% | |
| GGATCATGTGAAGGGAAATA+AGG | - | chr3_2:64066667-64066686 | None:intergenic | 40.0% | |
| CCACCATTAGAGCAAAAATC+TGG | - | chr3_2:64066964-64066983 | None:intergenic | 40.0% | |
| ! | CCAGATTTTTGCTCTAATGG+TGG | + | chr3_2:64066961-64066980 | Msa0416970:intron | 40.0% |
| !! | TTTTTGCTCTAATGGTGGTG+TGG | + | chr3_2:64066966-64066985 | Msa0416970:intron | 40.0% |
| !!! | TTGACGGTTTTGGGTGAAAA+TGG | + | chr3_2:64067193-64067212 | Msa0416970:intron | 40.0% |
| GCATCAGCTCTTTGTTGAAT+AGG | - | chr3_2:64067280-64067299 | None:intergenic | 40.0% | |
| AGAGTTAAGGACCCTGTTTA+TGG | + | chr3_2:64067331-64067350 | Msa0416970:CDS | 40.0% | |
| CTCCAACACAACCATAAACA+GGG | - | chr3_2:64067345-64067364 | None:intergenic | 40.0% | |
| !!! | GCTCAGAAACTTGGTTTTGA+AGG | - | chr3_2:64067378-64067397 | None:intergenic | 40.0% |
| ! | GCATTTGAAGCTCAGAAACT+TGG | - | chr3_2:64067387-64067406 | None:intergenic | 40.0% |
| GGATCATGTGAAGGGAAATA+AGG | - | chr3_2:64066667-64066686 | None:intergenic | 40.0% | |
| CCACCATTAGAGCAAAAATC+TGG | - | chr3_2:64066964-64066983 | None:intergenic | 40.0% | |
| ! | CCAGATTTTTGCTCTAATGG+TGG | + | chr3_2:64066961-64066980 | Msa0416970:intron | 40.0% |
| !! | TTTTTGCTCTAATGGTGGTG+TGG | + | chr3_2:64066966-64066985 | Msa0416970:intron | 40.0% |
| !!! | TTGACGGTTTTGGGTGAAAA+TGG | + | chr3_2:64067193-64067212 | Msa0416970:intron | 40.0% |
| GCATCAGCTCTTTGTTGAAT+AGG | - | chr3_2:64067280-64067299 | None:intergenic | 40.0% | |
| AGAGTTAAGGACCCTGTTTA+TGG | + | chr3_2:64067331-64067350 | Msa0416970:CDS | 40.0% | |
| CTCCAACACAACCATAAACA+GGG | - | chr3_2:64067345-64067364 | None:intergenic | 40.0% | |
| !!! | GCTCAGAAACTTGGTTTTGA+AGG | - | chr3_2:64067378-64067397 | None:intergenic | 40.0% |
| ! | GCATTTGAAGCTCAGAAACT+TGG | - | chr3_2:64067387-64067406 | None:intergenic | 40.0% |
| GAGTTTGCATGAAGCACAAG+GGG | - | chr3_2:64066608-64066627 | None:intergenic | 45.0% | |
| GGAGTTTGCATGAAGCACAA+GGG | - | chr3_2:64066609-64066628 | None:intergenic | 45.0% | |
| AGGAGTTTGCATGAAGCACA+AGG | - | chr3_2:64066610-64066629 | None:intergenic | 45.0% | |
| ! | GAGCATTTTGCTAACGTTGC+TGG | - | chr3_2:64066725-64066744 | None:intergenic | 45.0% |
| CAACGTTAGCAAAATGCTCC+AGG | + | chr3_2:64066726-64066745 | Msa0416970:CDS | 45.0% | |
| ! | TCAAGGAAGCATAGAAAGCG+TGG | - | chr3_2:64066760-64066779 | None:intergenic | 45.0% |
| GACCCTGTTTATGGTTGTGT+TGG | + | chr3_2:64067340-64067359 | Msa0416970:CDS | 45.0% | |
| GCTCCAACACAACCATAAAC+AGG | - | chr3_2:64067346-64067365 | None:intergenic | 45.0% | |
| GAGTTTGCATGAAGCACAAG+GGG | - | chr3_2:64066608-64066627 | None:intergenic | 45.0% | |
| GGAGTTTGCATGAAGCACAA+GGG | - | chr3_2:64066609-64066628 | None:intergenic | 45.0% | |
| AGGAGTTTGCATGAAGCACA+AGG | - | chr3_2:64066610-64066629 | None:intergenic | 45.0% | |
| ! | GAGCATTTTGCTAACGTTGC+TGG | - | chr3_2:64066725-64066744 | None:intergenic | 45.0% |
| CAACGTTAGCAAAATGCTCC+AGG | + | chr3_2:64066726-64066745 | Msa0416970:CDS | 45.0% | |
| ! | TCAAGGAAGCATAGAAAGCG+TGG | - | chr3_2:64066760-64066779 | None:intergenic | 45.0% |
| GACCCTGTTTATGGTTGTGT+TGG | + | chr3_2:64067340-64067359 | Msa0416970:CDS | 45.0% | |
| GCTCCAACACAACCATAAAC+AGG | - | chr3_2:64067346-64067365 | None:intergenic | 45.0% | |
| ! | GAAAGCGTGGATGAAGTACC+TGG | - | chr3_2:64066747-64066766 | None:intergenic | 50.0% |
| ! | GAAAGCGTGGATGAAGTACC+TGG | - | chr3_2:64066747-64066766 | None:intergenic | 50.0% |
| CCTTAGCACAACGGCGTCTA+AGG | - | chr3_2:64066630-64066649 | None:intergenic | 55.0% | |
| CCTTAGACGCCGTTGTGCTA+AGG | + | chr3_2:64066627-64066646 | Msa0416970:CDS | 55.0% | |
| CCTTAGCACAACGGCGTCTA+AGG | - | chr3_2:64066630-64066649 | None:intergenic | 55.0% | |
| CCTTAGACGCCGTTGTGCTA+AGG | + | chr3_2:64066627-64066646 | Msa0416970:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 64066586 | 64067714 | 64066586 | ID=Msa0416970;Name=Msa0416970 |
| chr3_2 | mRNA | 64066586 | 64067714 | 64066586 | ID=Msa0416970-mRNA-1;Parent=Msa0416970;Name=Msa0416970-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|0.66|1|1|3|0|157 |
| chr3_2 | exon | 64066586 | 64066747 | 64066586 | ID=Msa0416970-mRNA-1:exon:14048;Parent=Msa0416970-mRNA-1 |
| chr3_2 | exon | 64067271 | 64067546 | 64067271 | ID=Msa0416970-mRNA-1:exon:14049;Parent=Msa0416970-mRNA-1 |
| chr3_2 | exon | 64067679 | 64067714 | 64067679 | ID=Msa0416970-mRNA-1:exon:14050;Parent=Msa0416970-mRNA-1 |
| chr3_2 | CDS | 64066586 | 64066747 | 64066586 | ID=Msa0416970-mRNA-1:cds;Parent=Msa0416970-mRNA-1 |
| chr3_2 | CDS | 64067271 | 64067546 | 64067271 | ID=Msa0416970-mRNA-1:cds;Parent=Msa0416970-mRNA-1 |
| chr3_2 | CDS | 64067679 | 64067714 | 64067679 | ID=Msa0416970-mRNA-1:cds;Parent=Msa0416970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
