Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509170 | XP_003600972.1 | 98.742 | 159 | 2 | 0 | 5 | 163 | 1 | 159 | 1.16e-112 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509170 | sp|Q8LBW3|LBD12_ARATH | 76.978 | 139 | 26 | 2 | 5 | 139 | 1 | 137 | 7.35e-71 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509170 | G7J2B8 | 98.742 | 159 | 2 | 0 | 5 | 163 | 1 | 159 | 5.56e-113 | 327 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0509170 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0416970 | Msa0509170 | 0.940736 | 1.400274e-100 | -8.615850e-47 |
| Msa0463670 | Msa0509170 | 0.805904 | 1.065670e-49 | -8.615850e-47 |
| Msa0300670 | Msa0509170 | -0.801359 | 9.344739e-49 | -8.615850e-47 |
| Msa0363020 | Msa0509170 | 0.803595 | 3.234484e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509170 | MtrunA17_Chr3g0114061 | 98.742 | 159 | 2 | 0 | 5 | 163 | 1 | 159 | 1.07e-116 | 327 |
| Msa0509170 | MtrunA17_Chr5g0437571 | 74.534 | 161 | 32 | 4 | 5 | 160 | 1 | 157 | 6.52e-80 | 234 |
| Msa0509170 | MtrunA17_Chr3g0106101 | 64.706 | 153 | 41 | 2 | 7 | 146 | 2 | 154 | 3.59e-68 | 204 |
| Msa0509170 | MtrunA17_Chr2g0311601 | 78.302 | 106 | 23 | 0 | 8 | 113 | 9 | 114 | 3.18e-58 | 179 |
| Msa0509170 | MtrunA17_Chr4g0043421 | 74.107 | 112 | 25 | 1 | 6 | 113 | 5 | 116 | 3.39e-56 | 174 |
| Msa0509170 | MtrunA17_Chr4g0030001 | 70.192 | 104 | 30 | 1 | 11 | 113 | 23 | 126 | 1.53e-49 | 157 |
| Msa0509170 | MtrunA17_Chr1g0200201 | 71.287 | 101 | 29 | 0 | 13 | 113 | 73 | 173 | 1.04e-48 | 157 |
| Msa0509170 | MtrunA17_Chr5g0438091 | 67.619 | 105 | 34 | 0 | 8 | 112 | 35 | 139 | 4.59e-48 | 154 |
| Msa0509170 | MtrunA17_Chr3g0129071 | 66.981 | 106 | 35 | 0 | 8 | 113 | 43 | 148 | 6.08e-47 | 152 |
| Msa0509170 | MtrunA17_Chr7g0227511 | 64.762 | 105 | 37 | 0 | 9 | 113 | 8 | 112 | 4.81e-46 | 148 |
| Msa0509170 | MtrunA17_Chr3g0117121 | 66.346 | 104 | 35 | 0 | 10 | 113 | 8 | 111 | 5.77e-46 | 149 |
| Msa0509170 | MtrunA17_Chr4g0058651 | 66.019 | 103 | 35 | 0 | 11 | 113 | 10 | 112 | 7.10e-46 | 148 |
| Msa0509170 | MtrunA17_Chr6g0449651 | 51.034 | 145 | 62 | 3 | 4 | 148 | 59 | 194 | 8.90e-46 | 148 |
| Msa0509170 | MtrunA17_Chr6g0449641 | 52.143 | 140 | 58 | 2 | 9 | 148 | 6 | 136 | 1.56e-45 | 146 |
| Msa0509170 | MtrunA17_Chr3g0115431 | 60.550 | 109 | 43 | 0 | 4 | 112 | 1 | 109 | 2.06e-45 | 148 |
| Msa0509170 | MtrunA17_Chr5g0432451 | 66.038 | 106 | 36 | 0 | 8 | 113 | 39 | 144 | 1.10e-42 | 141 |
| Msa0509170 | MtrunA17_Chr3g0113891 | 63.366 | 101 | 37 | 0 | 9 | 109 | 11 | 111 | 1.52e-42 | 140 |
| Msa0509170 | MtrunA17_Chr3g0097221 | 59.048 | 105 | 43 | 0 | 8 | 112 | 3 | 107 | 2.71e-42 | 142 |
| Msa0509170 | MtrunA17_Chr5g0402611 | 58.333 | 108 | 45 | 0 | 5 | 112 | 1 | 108 | 8.77e-42 | 141 |
| Msa0509170 | MtrunA17_Chr5g0437401 | 62.376 | 101 | 38 | 0 | 9 | 109 | 8 | 108 | 2.04e-41 | 136 |
| Msa0509170 | MtrunA17_Chr7g0260971 | 54.955 | 111 | 49 | 1 | 3 | 112 | 5 | 115 | 8.58e-38 | 129 |
| Msa0509170 | MtrunA17_Chr8g0353981 | 57.798 | 109 | 46 | 0 | 9 | 117 | 4 | 112 | 4.21e-37 | 127 |
| Msa0509170 | MtrunA17_Chr1g0184281 | 51.695 | 118 | 56 | 1 | 12 | 128 | 15 | 132 | 6.68e-37 | 126 |
| Msa0509170 | MtrunA17_Chr5g0444351 | 51.961 | 102 | 49 | 0 | 13 | 114 | 6 | 107 | 6.08e-36 | 121 |
| Msa0509170 | MtrunA17_Chr7g0245871 | 56.863 | 102 | 43 | 1 | 12 | 112 | 27 | 128 | 6.33e-36 | 124 |
| Msa0509170 | MtrunA17_Chr7g0225111 | 50.893 | 112 | 54 | 1 | 11 | 122 | 4 | 114 | 9.23e-36 | 120 |
| Msa0509170 | MtrunA17_Chr7g0261031 | 44.295 | 149 | 79 | 3 | 4 | 149 | 1 | 148 | 2.58e-35 | 122 |
| Msa0509170 | MtrunA17_Chr8g0351721 | 55.556 | 108 | 47 | 1 | 11 | 117 | 17 | 124 | 2.60e-35 | 122 |
| Msa0509170 | MtrunA17_Chr1g0184271 | 45.139 | 144 | 70 | 5 | 12 | 150 | 12 | 151 | 3.25e-34 | 120 |
| Msa0509170 | MtrunA17_Chr8g0351701 | 54.369 | 103 | 46 | 1 | 11 | 112 | 22 | 124 | 3.64e-34 | 119 |
| Msa0509170 | MtrunA17_Chr5g0435641 | 54.082 | 98 | 44 | 1 | 11 | 107 | 6 | 103 | 2.13e-33 | 116 |
| Msa0509170 | MtrunA17_Chr6g0460951 | 50.000 | 104 | 51 | 1 | 11 | 113 | 39 | 142 | 2.25e-33 | 117 |
| Msa0509170 | MtrunA17_Chr7g0245861 | 55.208 | 96 | 40 | 2 | 6 | 98 | 6 | 101 | 4.82e-30 | 106 |
| Msa0509170 | MtrunA17_Chr8g0374591 | 42.593 | 108 | 62 | 0 | 5 | 112 | 1 | 108 | 5.49e-30 | 106 |
| Msa0509170 | MtrunA17_Chr8g0374601 | 44.954 | 109 | 60 | 0 | 4 | 112 | 18 | 126 | 9.24e-30 | 109 |
| Msa0509170 | MtrunA17_Chr8g0374581 | 44.545 | 110 | 60 | 1 | 5 | 113 | 1 | 110 | 1.11e-27 | 103 |
| Msa0509170 | MtrunA17_Chr6g0452671 | 39.423 | 104 | 63 | 0 | 2 | 105 | 1 | 104 | 9.54e-27 | 100 |
| Msa0509170 | MtrunA17_Chr6g0460941 | 50.000 | 88 | 43 | 1 | 12 | 98 | 7 | 94 | 9.90e-27 | 96.7 |
| Msa0509170 | MtrunA17_Chr6g0452691 | 38.514 | 148 | 81 | 5 | 2 | 147 | 1 | 140 | 1.14e-26 | 99.4 |
| Msa0509170 | MtrunA17_Chr4g0059901 | 38.776 | 147 | 81 | 3 | 5 | 144 | 3 | 147 | 1.54e-26 | 100 |
| Msa0509170 | MtrunA17_Chr2g0330201 | 38.462 | 104 | 64 | 0 | 9 | 112 | 16 | 119 | 1.40e-22 | 91.3 |
| Msa0509170 | MtrunA17_Chr4g0040831 | 42.697 | 89 | 51 | 0 | 13 | 101 | 16 | 104 | 1.93e-22 | 89.0 |
| Msa0509170 | MtrunA17_Chr8g0342351 | 37.500 | 104 | 65 | 0 | 9 | 112 | 9 | 112 | 3.47e-22 | 89.4 |
| Msa0509170 | MtrunA17_Chr2g0326051 | 61.538 | 65 | 25 | 0 | 57 | 121 | 5 | 69 | 4.27e-22 | 85.9 |
| Msa0509170 | MtrunA17_Chr6g0452661 | 43.750 | 80 | 44 | 1 | 13 | 91 | 10 | 89 | 4.29e-22 | 89.0 |
| Msa0509170 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 11 | 58 | 32 | 79 | 2.09e-19 | 77.8 |
| Msa0509170 | MtrunA17_Chr4g0046201 | 38.202 | 89 | 55 | 0 | 11 | 99 | 5 | 93 | 2.52e-19 | 82.0 |
| Msa0509170 | MtrunA17_Chr5g0439111 | 33.784 | 148 | 87 | 5 | 13 | 150 | 10 | 156 | 3.17e-19 | 81.3 |
| Msa0509170 | MtrunA17_Chr4g0055441 | 39.362 | 94 | 52 | 2 | 13 | 101 | 3 | 96 | 1.10e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509170 | AT2G30130.1 | 76.978 | 139 | 26 | 2 | 5 | 139 | 1 | 137 | 7.47e-72 | 214 |
| Msa0509170 | AT1G16530.1 | 67.544 | 114 | 36 | 1 | 7 | 119 | 9 | 122 | 3.30e-52 | 164 |
| Msa0509170 | AT1G07900.1 | 67.925 | 106 | 34 | 0 | 11 | 116 | 32 | 137 | 3.98e-50 | 159 |
| Msa0509170 | AT1G31320.1 | 76.923 | 91 | 21 | 0 | 8 | 98 | 9 | 99 | 1.05e-49 | 158 |
| Msa0509170 | AT2G28500.1 | 66.981 | 106 | 35 | 0 | 11 | 116 | 54 | 159 | 2.10e-49 | 159 |
| Msa0509170 | AT2G30340.1 | 64.151 | 106 | 38 | 0 | 8 | 113 | 48 | 153 | 2.65e-46 | 152 |
| Msa0509170 | AT2G30340.2 | 64.151 | 106 | 38 | 0 | 8 | 113 | 49 | 154 | 2.84e-46 | 152 |
| Msa0509170 | AT3G27650.1 | 62.385 | 109 | 41 | 0 | 5 | 113 | 32 | 140 | 4.89e-46 | 148 |
| Msa0509170 | AT5G63090.4 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 9.04e-46 | 148 |
| Msa0509170 | AT5G63090.3 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 9.04e-46 | 148 |
| Msa0509170 | AT5G63090.2 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 9.04e-46 | 148 |
| Msa0509170 | AT5G63090.1 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 9.04e-46 | 148 |
| Msa0509170 | AT2G40470.2 | 59.542 | 131 | 51 | 1 | 8 | 136 | 16 | 146 | 1.10e-45 | 148 |
| Msa0509170 | AT2G40470.1 | 59.542 | 131 | 51 | 1 | 8 | 136 | 41 | 171 | 2.41e-45 | 148 |
| Msa0509170 | AT3G26660.1 | 62.264 | 106 | 40 | 0 | 13 | 118 | 6 | 111 | 5.78e-45 | 144 |
| Msa0509170 | AT3G26620.1 | 62.264 | 106 | 40 | 0 | 13 | 118 | 6 | 111 | 6.23e-45 | 144 |
| Msa0509170 | AT3G11090.1 | 56.000 | 125 | 53 | 1 | 9 | 131 | 8 | 132 | 2.31e-42 | 139 |
| Msa0509170 | AT2G23660.2 | 56.731 | 104 | 45 | 0 | 10 | 113 | 3 | 106 | 3.13e-42 | 143 |
| Msa0509170 | AT2G23660.3 | 56.731 | 104 | 45 | 0 | 10 | 113 | 3 | 106 | 3.13e-42 | 143 |
| Msa0509170 | AT2G23660.1 | 56.731 | 104 | 45 | 0 | 10 | 113 | 3 | 106 | 3.13e-42 | 143 |
| Msa0509170 | AT5G66870.1 | 51.587 | 126 | 61 | 0 | 7 | 132 | 2 | 127 | 1.69e-41 | 141 |
| Msa0509170 | AT1G65620.1 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 7.19e-39 | 131 |
| Msa0509170 | AT1G65620.4 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 7.19e-39 | 131 |
| Msa0509170 | AT1G65620.3 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 7.19e-39 | 131 |
| Msa0509170 | AT1G65620.5 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 7.19e-39 | 131 |
| Msa0509170 | AT1G65620.2 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 7.19e-39 | 131 |
| Msa0509170 | AT4G00210.1 | 54.310 | 116 | 49 | 2 | 5 | 116 | 1 | 116 | 2.72e-37 | 127 |
| Msa0509170 | AT2G42430.1 | 55.856 | 111 | 48 | 1 | 3 | 112 | 6 | 116 | 9.05e-37 | 127 |
| Msa0509170 | AT3G03760.1 | 55.769 | 104 | 45 | 1 | 11 | 113 | 50 | 153 | 1.16e-36 | 127 |
| Msa0509170 | AT2G45410.1 | 56.731 | 104 | 44 | 1 | 15 | 117 | 19 | 122 | 1.11e-34 | 120 |
| Msa0509170 | AT2G42440.1 | 46.715 | 137 | 59 | 4 | 8 | 143 | 3 | 126 | 1.85e-34 | 121 |
| Msa0509170 | AT3G58190.1 | 54.639 | 97 | 43 | 1 | 12 | 107 | 11 | 107 | 4.74e-33 | 117 |
| Msa0509170 | AT2G31310.1 | 44.366 | 142 | 76 | 3 | 5 | 144 | 1 | 141 | 1.81e-32 | 114 |
| Msa0509170 | AT2G45420.1 | 52.427 | 103 | 48 | 1 | 15 | 116 | 40 | 142 | 6.04e-32 | 115 |
| Msa0509170 | AT4G00220.1 | 53.398 | 103 | 47 | 1 | 15 | 116 | 20 | 122 | 1.37e-31 | 113 |
| Msa0509170 | AT3G50510.1 | 43.902 | 123 | 67 | 1 | 10 | 130 | 10 | 132 | 1.72e-30 | 109 |
| Msa0509170 | AT3G50510.2 | 43.902 | 123 | 67 | 1 | 10 | 130 | 10 | 132 | 1.72e-30 | 109 |
| Msa0509170 | AT5G06080.1 | 53.125 | 96 | 44 | 1 | 11 | 105 | 6 | 101 | 6.02e-29 | 105 |
| Msa0509170 | AT5G35900.1 | 36.429 | 140 | 71 | 2 | 13 | 152 | 6 | 127 | 8.11e-26 | 98.2 |
| Msa0509170 | AT1G72980.1 | 39.640 | 111 | 67 | 0 | 2 | 112 | 3 | 113 | 8.32e-25 | 95.5 |
| Msa0509170 | AT3G47870.1 | 37.500 | 112 | 69 | 1 | 1 | 112 | 26 | 136 | 1.51e-24 | 97.4 |
| Msa0509170 | AT3G13850.1 | 35.537 | 121 | 74 | 1 | 13 | 129 | 37 | 157 | 1.42e-23 | 93.6 |
| Msa0509170 | AT1G06280.1 | 49.351 | 77 | 39 | 0 | 13 | 89 | 25 | 101 | 1.02e-20 | 84.7 |
| Msa0509170 | AT4G22700.1 | 35.821 | 134 | 72 | 4 | 13 | 145 | 6 | 126 | 1.34e-17 | 76.3 |
| Msa0509170 | AT2G19820.1 | 40.449 | 89 | 52 | 1 | 11 | 98 | 11 | 99 | 7.29e-17 | 72.8 |
| Msa0509170 | AT5G15060.1 | 40.000 | 80 | 44 | 2 | 7 | 83 | 12 | 90 | 5.51e-14 | 65.5 |
| Msa0509170 | AT1G36000.1 | 29.885 | 87 | 61 | 0 | 12 | 98 | 9 | 95 | 2.15e-12 | 60.8 |
| Msa0509170 | AT3G27940.3 | 36.364 | 66 | 42 | 0 | 11 | 76 | 4 | 69 | 4.11e-11 | 58.2 |
| Msa0509170 | AT3G27940.1 | 36.364 | 66 | 42 | 0 | 11 | 76 | 4 | 69 | 4.11e-11 | 58.2 |
| Msa0509170 | AT3G27940.2 | 36.364 | 66 | 42 | 0 | 11 | 76 | 4 | 69 | 4.11e-11 | 58.2 |
Find 21 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATCATCATGTTTCTTC+TGG | 0.220129 | 3_4:-57499087 | None:intergenic |
| CCTTAGCACAACGGCGTCTA+AGG | 0.285930 | 3_4:-57498271 | None:intergenic |
| GCATCAGCTCTTTGTTGAAT+AGG | 0.314081 | 3_4:-57498923 | None:intergenic |
| AGAGTTAAGGACCCTGTTTA+TGG | 0.329312 | 3_4:+57498977 | Msa0509170:CDS |
| GGATCATGTGAAGGGAAATA+AGG | 0.350330 | 3_4:-57498308 | None:intergenic |
| GCTCCAACACAACCATAAAC+AGG | 0.400328 | 3_4:-57498989 | None:intergenic |
| GCATTTGAAGCTCAGAAACT+TGG | 0.418459 | 3_4:-57499030 | None:intergenic |
| TGAAGCAAATGCAAGAGTTA+AGG | 0.446961 | 3_4:+57498964 | Msa0509170:CDS |
| TGAATTACATTGCTTGAAGA+AGG | 0.450118 | 3_4:-57499178 | None:intergenic |
| GACCCTGTTTATGGTTGTGT+TGG | 0.463653 | 3_4:+57498986 | Msa0509170:CDS |
| GATCATAAGATTTATGATCA+AGG | 0.495019 | 3_4:-57499135 | None:intergenic |
| CCTTAGACGCCGTTGTGCTA+AGG | 0.517412 | 3_4:+57498271 | Msa0509170:CDS |
| GAAGGAAAGTTGAAATACTG+AGG | 0.552181 | 3_4:-57499160 | None:intergenic |
| ATCATAAGATTTATGATCAA+GGG | 0.554510 | 3_4:-57499134 | None:intergenic |
| CAACGTTAGCAAAATGCTCC+AGG | 0.569502 | 3_4:+57498370 | Msa0509170:CDS |
| AAAATTTGCAATAGTTCACA+AGG | 0.586403 | 3_4:+57498334 | Msa0509170:CDS |
| AGGAGTTTGCATGAAGCACA+AGG | 0.592427 | 3_4:-57498251 | None:intergenic |
| GAGTTTGCATGAAGCACAAG+GGG | 0.629954 | 3_4:-57498249 | None:intergenic |
| CTCCAACACAACCATAAACA+GGG | 0.642977 | 3_4:-57498988 | None:intergenic |
| GGAGTTTGCATGAAGCACAA+GGG | 0.671143 | 3_4:-57498250 | None:intergenic |
| AGATACAATCCTTAGCACAA+CGG | 0.718268 | 3_4:-57498280 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTTTTTTTTTTAAAGAA+AGG | + | chr3_4:57498861-57498880 | Msa0509170:intron | 10.0% |
| !!! | TAACTTTTTTTTTTAAAGAA+AGG | + | chr3_4:57498861-57498880 | Msa0509170:intron | 10.0% |
| !!! | TCGTTTTTAAAATAGAATAT+TGG | - | chr3_4:57498749-57498768 | None:intergenic | 15.0% |
| !!! | AAAAGTACAATTTTCTTATT+GGG | + | chr3_4:57498805-57498824 | Msa0509170:intron | 15.0% |
| !!! | TTTTTTTTAAAGAAAGGAAA+TGG | + | chr3_4:57498867-57498886 | Msa0509170:intron | 15.0% |
| !!! | TCGTTTTTAAAATAGAATAT+TGG | - | chr3_4:57498749-57498768 | None:intergenic | 15.0% |
| !!! | AAAAGTACAATTTTCTTATT+GGG | + | chr3_4:57498805-57498824 | Msa0509170:intron | 15.0% |
| !!! | TTTTTTTTAAAGAAAGGAAA+TGG | + | chr3_4:57498867-57498886 | Msa0509170:intron | 15.0% |
| !!! | TGAACTATTGCAAATTTTTT+AGG | - | chr3_4:57498332-57498351 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCTTTTTCTTTCA+AGG | - | chr3_4:57498421-57498440 | None:intergenic | 20.0% |
| !!! | AAAACTTCGATTTTAAAATG+TGG | - | chr3_4:57498545-57498564 | None:intergenic | 20.0% |
| !! | AAATGATATGACATTAAACA+TGG | - | chr3_4:57498681-57498700 | None:intergenic | 20.0% |
| !! | ATGTCATATCATTTAACAAT+TGG | + | chr3_4:57498687-57498706 | Msa0509170:intron | 20.0% |
| !!! | CAAAAGTACAATTTTCTTAT+TGG | + | chr3_4:57498804-57498823 | Msa0509170:intron | 20.0% |
| !! | ATCATAAGATTTATGATCAA+GGG | - | chr3_4:57499137-57499156 | None:intergenic | 20.0% |
| !!! | TGAACTATTGCAAATTTTTT+AGG | - | chr3_4:57498332-57498351 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCTTTTTCTTTCA+AGG | - | chr3_4:57498421-57498440 | None:intergenic | 20.0% |
| !!! | AAAACTTCGATTTTAAAATG+TGG | - | chr3_4:57498545-57498564 | None:intergenic | 20.0% |
| !! | AAATGATATGACATTAAACA+TGG | - | chr3_4:57498681-57498700 | None:intergenic | 20.0% |
| !! | ATGTCATATCATTTAACAAT+TGG | + | chr3_4:57498687-57498706 | Msa0509170:intron | 20.0% |
| !!! | CAAAAGTACAATTTTCTTAT+TGG | + | chr3_4:57498804-57498823 | Msa0509170:intron | 20.0% |
| !! | ATCATAAGATTTATGATCAA+GGG | - | chr3_4:57499137-57499156 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGGATCATGTGAA+GGG | - | chr3_4:57498319-57498338 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATCATGTGA+AGG | - | chr3_4:57498320-57498339 | None:intergenic | 25.0% |
| ! | AAAATTTGCAATAGTTCACA+AGG | + | chr3_4:57498334-57498353 | Msa0509170:CDS | 25.0% |
| !! | AGAACAAAAGTACAATTAAG+CGG | - | chr3_4:57498493-57498512 | None:intergenic | 25.0% |
| ! | CAGATATTTGTTTCAAAAAG+TGG | - | chr3_4:57498718-57498737 | None:intergenic | 25.0% |
| !! | ATTTCTTGATTTTGCATTAG+AGG | - | chr3_4:57499112-57499131 | None:intergenic | 25.0% |
| ! | GATCATAAGATTTATGATCA+AGG | - | chr3_4:57499138-57499157 | None:intergenic | 25.0% |
| !!! | ATTTTTTAGGATCATGTGAA+GGG | - | chr3_4:57498319-57498338 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATCATGTGA+AGG | - | chr3_4:57498320-57498339 | None:intergenic | 25.0% |
| ! | AAAATTTGCAATAGTTCACA+AGG | + | chr3_4:57498334-57498353 | Msa0509170:CDS | 25.0% |
| !! | AGAACAAAAGTACAATTAAG+CGG | - | chr3_4:57498493-57498512 | None:intergenic | 25.0% |
| ! | CAGATATTTGTTTCAAAAAG+TGG | - | chr3_4:57498718-57498737 | None:intergenic | 25.0% |
| !! | ATTTCTTGATTTTGCATTAG+AGG | - | chr3_4:57499112-57499131 | None:intergenic | 25.0% |
| ! | GATCATAAGATTTATGATCA+AGG | - | chr3_4:57499138-57499157 | None:intergenic | 25.0% |
| !!! | GTATAAGAGAGCGTTATTTT+AGG | + | chr3_4:57498449-57498468 | Msa0509170:intron | 30.0% |
| ! | GAACAAAAGTACAATTAAGC+GGG | - | chr3_4:57498492-57498511 | None:intergenic | 30.0% |
| !!! | TATTGGGTTTTGAGTTTTGA+CGG | + | chr3_4:57498821-57498840 | Msa0509170:intron | 30.0% |
| !!! | TTTTGAGTTTTGACGGTTTT+GGG | + | chr3_4:57498828-57498847 | Msa0509170:intron | 30.0% |
| GACTTATTGTACAATGCTAT+AGG | + | chr3_4:57498895-57498914 | Msa0509170:intron | 30.0% | |
| TGAATTACATTGCTTGAAGA+AGG | - | chr3_4:57499181-57499200 | None:intergenic | 30.0% | |
| !!! | GTATAAGAGAGCGTTATTTT+AGG | + | chr3_4:57498449-57498468 | Msa0509170:intron | 30.0% |
| ! | GAACAAAAGTACAATTAAGC+GGG | - | chr3_4:57498492-57498511 | None:intergenic | 30.0% |
| !!! | TATTGGGTTTTGAGTTTTGA+CGG | + | chr3_4:57498821-57498840 | Msa0509170:intron | 30.0% |
| !!! | TTTTGAGTTTTGACGGTTTT+GGG | + | chr3_4:57498828-57498847 | Msa0509170:intron | 30.0% |
| GACTTATTGTACAATGCTAT+AGG | + | chr3_4:57498895-57498914 | Msa0509170:intron | 30.0% | |
| TGAATTACATTGCTTGAAGA+AGG | - | chr3_4:57499181-57499200 | None:intergenic | 30.0% | |
| AGATACAATCCTTAGCACAA+CGG | - | chr3_4:57498283-57498302 | None:intergenic | 35.0% | |
| ! | GCAATAGTTCACAAGGTTTT+TGG | + | chr3_4:57498341-57498360 | Msa0509170:CDS | 35.0% |
| ! | TATCAAACTCGTTGCAGTTT+TGG | + | chr3_4:57498575-57498594 | Msa0509170:intron | 35.0% |
| TTAGAGCAAAAATCTGGGTT+AGG | - | chr3_4:57498602-57498621 | None:intergenic | 35.0% | |
| ! | AACCCAGATTTTTGCTCTAA+TGG | + | chr3_4:57498602-57498621 | Msa0509170:intron | 35.0% |
| CACCATTAGAGCAAAAATCT+GGG | - | chr3_4:57498607-57498626 | None:intergenic | 35.0% | |
| ATTTGTTTCAAAAAGTGGCG+TGG | - | chr3_4:57498713-57498732 | None:intergenic | 35.0% | |
| !!! | GTTTTGAGTTTTGACGGTTT+TGG | + | chr3_4:57498827-57498846 | Msa0509170:intron | 35.0% |
| TGAAGCAAATGCAAGAGTTA+AGG | + | chr3_4:57498964-57498983 | Msa0509170:CDS | 35.0% | |
| GTTGATCATCATGTTTCTTC+TGG | - | chr3_4:57499090-57499109 | None:intergenic | 35.0% | |
| GAAGGAAAGTTGAAATACTG+AGG | - | chr3_4:57499163-57499182 | None:intergenic | 35.0% | |
| AGATACAATCCTTAGCACAA+CGG | - | chr3_4:57498283-57498302 | None:intergenic | 35.0% | |
| ! | GCAATAGTTCACAAGGTTTT+TGG | + | chr3_4:57498341-57498360 | Msa0509170:CDS | 35.0% |
| ! | TATCAAACTCGTTGCAGTTT+TGG | + | chr3_4:57498575-57498594 | Msa0509170:intron | 35.0% |
| TTAGAGCAAAAATCTGGGTT+AGG | - | chr3_4:57498602-57498621 | None:intergenic | 35.0% | |
| ! | AACCCAGATTTTTGCTCTAA+TGG | + | chr3_4:57498602-57498621 | Msa0509170:intron | 35.0% |
| CACCATTAGAGCAAAAATCT+GGG | - | chr3_4:57498607-57498626 | None:intergenic | 35.0% | |
| ATTTGTTTCAAAAAGTGGCG+TGG | - | chr3_4:57498713-57498732 | None:intergenic | 35.0% | |
| !!! | GTTTTGAGTTTTGACGGTTT+TGG | + | chr3_4:57498827-57498846 | Msa0509170:intron | 35.0% |
| TGAAGCAAATGCAAGAGTTA+AGG | + | chr3_4:57498964-57498983 | Msa0509170:CDS | 35.0% | |
| GTTGATCATCATGTTTCTTC+TGG | - | chr3_4:57499090-57499109 | None:intergenic | 35.0% | |
| GAAGGAAAGTTGAAATACTG+AGG | - | chr3_4:57499163-57499182 | None:intergenic | 35.0% | |
| GGATCATGTGAAGGGAAATA+AGG | - | chr3_4:57498311-57498330 | None:intergenic | 40.0% | |
| CCACCATTAGAGCAAAAATC+TGG | - | chr3_4:57498608-57498627 | None:intergenic | 40.0% | |
| ! | CCAGATTTTTGCTCTAATGG+TGG | + | chr3_4:57498605-57498624 | Msa0509170:intron | 40.0% |
| !! | TTTTTGCTCTAATGGTGGTG+TGG | + | chr3_4:57498610-57498629 | Msa0509170:intron | 40.0% |
| !!! | TTGACGGTTTTGGGTGAAAA+TGG | + | chr3_4:57498837-57498856 | Msa0509170:intron | 40.0% |
| GCATCAGCTCTTTGTTGAAT+AGG | - | chr3_4:57498926-57498945 | None:intergenic | 40.0% | |
| AGAGTTAAGGACCCTGTTTA+TGG | + | chr3_4:57498977-57498996 | Msa0509170:CDS | 40.0% | |
| CTCCAACACAACCATAAACA+GGG | - | chr3_4:57498991-57499010 | None:intergenic | 40.0% | |
| !!! | GCTCAGAAACTTGGTTTTGA+AGG | - | chr3_4:57499024-57499043 | None:intergenic | 40.0% |
| ! | GCATTTGAAGCTCAGAAACT+TGG | - | chr3_4:57499033-57499052 | None:intergenic | 40.0% |
| GGATCATGTGAAGGGAAATA+AGG | - | chr3_4:57498311-57498330 | None:intergenic | 40.0% | |
| CCACCATTAGAGCAAAAATC+TGG | - | chr3_4:57498608-57498627 | None:intergenic | 40.0% | |
| ! | CCAGATTTTTGCTCTAATGG+TGG | + | chr3_4:57498605-57498624 | Msa0509170:intron | 40.0% |
| !! | TTTTTGCTCTAATGGTGGTG+TGG | + | chr3_4:57498610-57498629 | Msa0509170:intron | 40.0% |
| !!! | TTGACGGTTTTGGGTGAAAA+TGG | + | chr3_4:57498837-57498856 | Msa0509170:intron | 40.0% |
| GCATCAGCTCTTTGTTGAAT+AGG | - | chr3_4:57498926-57498945 | None:intergenic | 40.0% | |
| AGAGTTAAGGACCCTGTTTA+TGG | + | chr3_4:57498977-57498996 | Msa0509170:CDS | 40.0% | |
| CTCCAACACAACCATAAACA+GGG | - | chr3_4:57498991-57499010 | None:intergenic | 40.0% | |
| !!! | GCTCAGAAACTTGGTTTTGA+AGG | - | chr3_4:57499024-57499043 | None:intergenic | 40.0% |
| ! | GCATTTGAAGCTCAGAAACT+TGG | - | chr3_4:57499033-57499052 | None:intergenic | 40.0% |
| GAGTTTGCATGAAGCACAAG+GGG | - | chr3_4:57498252-57498271 | None:intergenic | 45.0% | |
| GGAGTTTGCATGAAGCACAA+GGG | - | chr3_4:57498253-57498272 | None:intergenic | 45.0% | |
| AGGAGTTTGCATGAAGCACA+AGG | - | chr3_4:57498254-57498273 | None:intergenic | 45.0% | |
| ! | GAGCATTTTGCTAACGTTGC+TGG | - | chr3_4:57498369-57498388 | None:intergenic | 45.0% |
| CAACGTTAGCAAAATGCTCC+AGG | + | chr3_4:57498370-57498389 | Msa0509170:CDS | 45.0% | |
| ! | TCAAGGAAGCATAGAAAGCG+TGG | - | chr3_4:57498404-57498423 | None:intergenic | 45.0% |
| GACCCTGTTTATGGTTGTGT+TGG | + | chr3_4:57498986-57499005 | Msa0509170:CDS | 45.0% | |
| GCTCCAACACAACCATAAAC+AGG | - | chr3_4:57498992-57499011 | None:intergenic | 45.0% | |
| GAGTTTGCATGAAGCACAAG+GGG | - | chr3_4:57498252-57498271 | None:intergenic | 45.0% | |
| GGAGTTTGCATGAAGCACAA+GGG | - | chr3_4:57498253-57498272 | None:intergenic | 45.0% | |
| AGGAGTTTGCATGAAGCACA+AGG | - | chr3_4:57498254-57498273 | None:intergenic | 45.0% | |
| ! | GAGCATTTTGCTAACGTTGC+TGG | - | chr3_4:57498369-57498388 | None:intergenic | 45.0% |
| CAACGTTAGCAAAATGCTCC+AGG | + | chr3_4:57498370-57498389 | Msa0509170:CDS | 45.0% | |
| ! | TCAAGGAAGCATAGAAAGCG+TGG | - | chr3_4:57498404-57498423 | None:intergenic | 45.0% |
| GACCCTGTTTATGGTTGTGT+TGG | + | chr3_4:57498986-57499005 | Msa0509170:CDS | 45.0% | |
| GCTCCAACACAACCATAAAC+AGG | - | chr3_4:57498992-57499011 | None:intergenic | 45.0% | |
| ! | GAAAGCGTGGATGAAGTACC+TGG | - | chr3_4:57498391-57498410 | None:intergenic | 50.0% |
| ! | GAAAGCGTGGATGAAGTACC+TGG | - | chr3_4:57498391-57498410 | None:intergenic | 50.0% |
| CCTTAGCACAACGGCGTCTA+AGG | - | chr3_4:57498274-57498293 | None:intergenic | 55.0% | |
| CCTTAGACGCCGTTGTGCTA+AGG | + | chr3_4:57498271-57498290 | Msa0509170:CDS | 55.0% | |
| CCTTAGCACAACGGCGTCTA+AGG | - | chr3_4:57498274-57498293 | None:intergenic | 55.0% | |
| CCTTAGACGCCGTTGTGCTA+AGG | + | chr3_4:57498271-57498290 | Msa0509170:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 57498218 | 57499234 | 57498218 | ID=Msa0509170;Name=Msa0509170 |
| chr3_4 | mRNA | 57498218 | 57499234 | 57498218 | ID=Msa0509170-mRNA-1;Parent=Msa0509170;Name=Msa0509170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|2|0|163 |
| chr3_4 | exon | 57498218 | 57498391 | 57498218 | ID=Msa0509170-mRNA-1:exon:13157;Parent=Msa0509170-mRNA-1 |
| chr3_4 | exon | 57498917 | 57499234 | 57498917 | ID=Msa0509170-mRNA-1:exon:13158;Parent=Msa0509170-mRNA-1 |
| chr3_4 | CDS | 57498218 | 57498391 | 57498218 | ID=Msa0509170-mRNA-1:cds;Parent=Msa0509170-mRNA-1 |
| chr3_4 | CDS | 57498917 | 57499234 | 57498917 | ID=Msa0509170-mRNA-1:cds;Parent=Msa0509170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
