AlfalfaGEDB | Msa0509170

M. sativa cultivar zhongmu-4 / Msa0509170

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509170	XP_003600972.1	98.742	159	2	0	5	163	1	159	1.16e-112	327

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509170	sp\|Q8LBW3\|LBD12_ARATH	76.978	139	26	2	5	139	1	137	7.35e-71	214

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509170	G7J2B8	98.742	159	2	0	5	163	1	159	5.56e-113	327

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TFs/TRs:

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Gene ID	Type	Classification
Msa0509170	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0300670	Msa0509170	-0.801359	9.344739e-49	-8.615850e-47
Msa0363020	Msa0509170	0.803595	3.234484e-49	-8.615850e-47
Msa0416970	Msa0509170	0.940736	1.400274e-100	-8.615850e-47
Msa0463670	Msa0509170	0.805904	1.065670e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509170	MtrunA17_Chr3g0114061	98.742	159	2	0	5	163	1	159	1.07e-116	327
Msa0509170	MtrunA17_Chr5g0437571	74.534	161	32	4	5	160	1	157	6.52e-80	234
Msa0509170	MtrunA17_Chr3g0106101	64.706	153	41	2	7	146	2	154	3.59e-68	204
Msa0509170	MtrunA17_Chr2g0311601	78.302	106	23	0	8	113	9	114	3.18e-58	179
Msa0509170	MtrunA17_Chr4g0043421	74.107	112	25	1	6	113	5	116	3.39e-56	174
Msa0509170	MtrunA17_Chr4g0030001	70.192	104	30	1	11	113	23	126	1.53e-49	157
Msa0509170	MtrunA17_Chr1g0200201	71.287	101	29	0	13	113	73	173	1.04e-48	157
Msa0509170	MtrunA17_Chr5g0438091	67.619	105	34	0	8	112	35	139	4.59e-48	154
Msa0509170	MtrunA17_Chr3g0129071	66.981	106	35	0	8	113	43	148	6.08e-47	152
Msa0509170	MtrunA17_Chr7g0227511	64.762	105	37	0	9	113	8	112	4.81e-46	148

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509170	AT2G30130.1	76.978	139	26	2	5	139	1	137	7.47e-72	214
Msa0509170	AT1G16530.1	67.544	114	36	1	7	119	9	122	3.30e-52	164
Msa0509170	AT1G07900.1	67.925	106	34	0	11	116	32	137	3.98e-50	159
Msa0509170	AT1G31320.1	76.923	91	21	0	8	98	9	99	1.05e-49	158
Msa0509170	AT2G28500.1	66.981	106	35	0	11	116	54	159	2.10e-49	159
Msa0509170	AT2G30340.1	64.151	106	38	0	8	113	48	153	2.65e-46	152
Msa0509170	AT2G30340.2	64.151	106	38	0	8	113	49	154	2.84e-46	152
Msa0509170	AT3G27650.1	62.385	109	41	0	5	113	32	140	4.89e-46	148
Msa0509170	AT5G63090.4	66.990	103	34	0	10	112	9	111	9.04e-46	148
Msa0509170	AT5G63090.3	66.990	103	34	0	10	112	9	111	9.04e-46	148

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Find 21 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGCAATAGTTCACA+AGG	0.586403	3_4:+57498334	Msa0509170:CDS
AGAGTTAAGGACCCTGTTTA+TGG	0.329312	3_4:+57498977	Msa0509170:CDS
AGATACAATCCTTAGCACAA+CGG	0.718268	3_4:-57498280	None:intergenic
AGGAGTTTGCATGAAGCACA+AGG	0.592427	3_4:-57498251	None:intergenic
ATCATAAGATTTATGATCAA+GGG	0.554510	3_4:-57499134	None:intergenic
CAACGTTAGCAAAATGCTCC+AGG	0.569502	3_4:+57498370	Msa0509170:CDS
CCTTAGACGCCGTTGTGCTA+AGG	0.517412	3_4:+57498271	Msa0509170:CDS
CCTTAGCACAACGGCGTCTA+AGG	0.285930	3_4:-57498271	None:intergenic
CTCCAACACAACCATAAACA+GGG	0.642977	3_4:-57498988	None:intergenic
GAAGGAAAGTTGAAATACTG+AGG	0.552181	3_4:-57499160	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACTTATTGTACAATGCTAT+AGG	+	chr3_4:57498895-57498914	Msa0509170:intron	30.0%
TGAATTACATTGCTTGAAGA+AGG	-	chr3_4:57499181-57499200	None:intergenic	30.0%
GACTTATTGTACAATGCTAT+AGG	+	chr3_4:57498895-57498914	Msa0509170:intron	30.0%
TGAATTACATTGCTTGAAGA+AGG	-	chr3_4:57499181-57499200	None:intergenic	30.0%
AGATACAATCCTTAGCACAA+CGG	-	chr3_4:57498283-57498302	None:intergenic	35.0%
TTAGAGCAAAAATCTGGGTT+AGG	-	chr3_4:57498602-57498621	None:intergenic	35.0%
CACCATTAGAGCAAAAATCT+GGG	-	chr3_4:57498607-57498626	None:intergenic	35.0%
ATTTGTTTCAAAAAGTGGCG+TGG	-	chr3_4:57498713-57498732	None:intergenic	35.0%
TGAAGCAAATGCAAGAGTTA+AGG	+	chr3_4:57498964-57498983	Msa0509170:CDS	35.0%
GTTGATCATCATGTTTCTTC+TGG	-	chr3_4:57499090-57499109	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	57498218	57499234	57498218	ID=Msa0509170;Name=Msa0509170
chr3_4	mRNA	57498218	57499234	57498218	ID=Msa0509170-mRNA-1;Parent=Msa0509170;Name=Msa0509170-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0\|0\|1\|1\|1\|2\|0\|163
chr3_4	exon	57498218	57498391	57498218	ID=Msa0509170-mRNA-1:exon:13157;Parent=Msa0509170-mRNA-1
chr3_4	exon	57498917	57499234	57498917	ID=Msa0509170-mRNA-1:exon:13158;Parent=Msa0509170-mRNA-1
chr3_4	CDS	57498218	57498391	57498218	ID=Msa0509170-mRNA-1:cds;Parent=Msa0509170-mRNA-1
chr3_4	CDS	57498917	57499234	57498917	ID=Msa0509170-mRNA-1:cds;Parent=Msa0509170-mRNA-1

Gene Sequence

>Msa0509170

TTCATAAATCTAATGGGTGGTAATACTACTTCCCCTTGTGCTTCATGCAAACTCCTTAGACGCCGTTGTGCTAAGGATTGTATCTTTGCTCCTTATTTCCCTTCACATGATCCTAAAAAATTTGCAATAGTTCACAAGGTTTTTGGTGCCAGCAACGTTAGCAAAATGCTCCAGGAACTTCCTATTCAACAAAGAGCTGATGCAGTAAGCAGCTTAGTGTATGAAGCAAATGCAAGAGTTAAGGACCCTGTTTATGGTTGTGTTGGAGCAATATCATACCTTCAAAACCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTAGCACAAGCAGAAATACTTTGCATCCAGAAGAAACATGATGATCAACCTCTAATGCAAAATCAAGAAATAGCCCTTGATCATAAATCTTATGATCTTCCTCAGTATTTCAACTTTCCTTCTTCAAGCAATGTAATTCATCATGATTCTTTCTCAAGAGAGAGAATTTTTTGA

Protein sequence

>Msa0509170

FINLMGGNTTSPCASCKLLRRRCAKDCIFAPYFPSHDPKKFAIVHKVFGASNVSKMLQELPIQQRADAVSSLVYEANARVKDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQKKHDDQPLMQNQEIALDHKSYDLPQYFNFPSSSNVIHHDSFSRERIF*