AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417280 MtrunA17_Chr3g0114691 97.208 394 11 0 1 394 1 394 0.0 790
Msa0417280 MtrunA17_Chr1g0160171 77.688 372 77 5 9 380 7 372 0.0 595
Msa0417280 MtrunA17_Chr7g0263101 54.599 337 143 4 20 352 13 343 5.07e-128 373
Msa0417280 MtrunA17_Chr3g0114711 46.020 402 168 5 1 361 1 394 5.94e-125 366
Msa0417280 MtrunA17_Chr1g0182291 51.437 348 161 3 16 362 11 351 6.67e-124 362
Msa0417280 MtrunA17_Chr7g0255561 50.602 332 160 2 14 342 8 338 2.66e-122 359
Msa0417280 MtrunA17_Chr7g0255581 50.602 332 160 2 14 342 8 338 2.66e-122 359
Msa0417280 MtrunA17_Chr3g0081421 47.472 356 178 4 16 367 13 363 5.69e-118 348
Msa0417280 MtrunA17_Chr3g0114731 46.296 378 196 3 20 394 18 391 8.15e-118 348
Msa0417280 MtrunA17_Chr1g0160181 49.254 335 169 1 14 347 12 346 1.35e-113 337
Msa0417280 MtrunA17_Chr8g0354121 45.093 377 194 5 16 389 9 375 9.24e-113 335
Msa0417280 MtrunA17_Chr3g0081511 45.989 374 193 5 20 390 17 384 1.37e-112 334
Msa0417280 MtrunA17_Chr3g0114701 40.827 387 218 3 13 389 2 387 6.59e-99 299
Msa0417280 MtrunA17_Chr1g0186611 40.058 342 198 3 17 355 13 350 7.71e-87 267
Msa0417280 MtrunA17_Chr1g0171301 38.968 349 196 4 17 356 13 353 3.14e-86 266
Msa0417280 MtrunA17_Chr1g0186641 40.120 334 187 3 16 344 9 334 9.61e-86 264
Msa0417280 MtrunA17_Chr1g0186601 38.182 330 199 3 16 344 12 337 3.67e-83 258
Msa0417280 MtrunA17_Chr1g0186571 39.697 330 194 3 16 344 9 334 1.76e-82 256
Msa0417280 MtrunA17_Chr1g0186561 38.905 347 202 3 17 362 13 350 4.34e-82 255
Msa0417280 MtrunA17_Chr3g0142131 37.092 337 201 2 17 342 17 353 7.34e-79 248
Msa0417280 MtrunA17_Chr1g0184221 35.593 354 190 4 17 347 13 351 2.28e-78 246
Msa0417280 MtrunA17_Chr1g0155761 33.062 369 231 2 17 369 18 386 4.08e-75 238
Msa0417280 MtrunA17_Chr6g0463971 33.429 347 226 3 15 357 11 356 1.48e-73 233
Msa0417280 MtrunA17_Chr2g0278561 35.844 385 226 5 9 389 4 371 3.52e-72 231
Msa0417280 MtrunA17_Chr3g0129601 33.140 344 229 1 5 347 14 357 2.14e-71 228
Msa0417280 MtrunA17_Chr6g0483401 33.803 355 219 4 29 378 19 362 5.51e-70 224
Msa0417280 MtrunA17_Chr3g0129571 31.933 357 230 4 16 368 3 350 8.25e-70 224
Msa0417280 MtrunA17_Chr1g0177221 40.234 256 149 2 14 268 12 264 2.52e-69 219
Msa0417280 MtrunA17_Chr4g0050881 34.758 351 222 3 13 357 2 351 6.63e-68 218
Msa0417280 MtrunA17_Chr2g0278551 35.780 327 210 0 19 345 11 337 2.80e-67 218
Msa0417280 MtrunA17_Chr3g0129591 33.152 368 229 5 18 381 3 357 1.93e-66 215
Msa0417280 MtrunA17_Chr2g0284261 33.242 364 228 5 20 376 8 363 2.07e-66 215
Msa0417280 MtrunA17_Chr8g0383731 33.134 335 220 1 16 346 1 335 3.52e-65 211
Msa0417280 MtrunA17_Chr2g0290611 33.233 331 221 0 15 345 7 337 8.81e-65 211
Msa0417280 MtrunA17_Chr2g0310441 34.711 363 219 5 21 381 11 357 1.87e-64 210
Msa0417280 MtrunA17_Chr4g0050891 34.056 323 210 1 16 335 9 331 5.92e-64 208
Msa0417280 MtrunA17_Chr2g0278541 33.596 381 240 5 19 390 11 387 6.03e-64 209
Msa0417280 MtrunA17_Chr1g0164831 33.628 339 214 4 20 352 3 336 2.96e-62 203
Msa0417280 MtrunA17_Chr8g0334761 33.956 321 209 2 21 340 11 329 3.21e-62 204
Msa0417280 MtrunA17_Chr3g0129581 32.880 368 230 4 18 381 3 357 3.95e-62 204
Msa0417280 MtrunA17_Chr8g0334771 34.521 365 220 6 21 381 11 360 5.68e-62 204
Msa0417280 MtrunA17_Chr7g0271561 34.211 342 206 4 18 347 5 339 8.14e-62 203
Msa0417280 MtrunA17_Chr3g0126101 36.482 307 184 4 44 347 30 328 1.07e-61 202
Msa0417280 MtrunA17_Chr4g0051021 32.320 362 242 1 9 367 3 364 5.96e-61 201
Msa0417280 MtrunA17_Chr4g0050941 35.015 337 213 3 16 346 8 344 1.86e-60 200
Msa0417280 MtrunA17_Chr4g0059311 32.923 325 204 2 45 363 37 353 1.05e-58 194
Msa0417280 MtrunA17_Chr5g0413961 32.448 339 220 5 7 344 2 332 2.02e-56 189
Msa0417280 MtrunA17_Chr2g0332001 32.448 339 224 4 19 356 37 371 2.86e-56 189
Msa0417280 MtrunA17_Chr5g0413941 35.168 327 203 5 24 347 11 331 5.10e-56 187
Msa0417280 MtrunA17_Chr5g0408031 33.431 341 211 2 17 342 7 346 1.40e-55 187
Msa0417280 MtrunA17_Chr8g0334751 33.956 321 209 2 21 340 12 330 1.34e-54 184
Msa0417280 MtrunA17_Chr5g0408001 31.978 369 233 4 20 372 10 376 7.24e-54 183
Msa0417280 MtrunA17_Chr5g0408041 32.615 371 231 4 19 372 10 378 1.27e-53 182
Msa0417280 MtrunA17_Chr4g0073241 29.706 340 229 4 21 356 9 342 8.17e-53 179
Msa0417280 MtrunA17_Chr1g0160111 31.250 336 211 3 29 353 16 342 1.64e-52 179
Msa0417280 MtrunA17_Chr7g0227921 35.644 303 189 4 46 346 37 335 2.10e-52 178
Msa0417280 MtrunA17_Chr5g0413921 32.407 324 205 4 25 342 12 327 7.83e-52 176
Msa0417280 MtrunA17_Chr5g0407971 31.638 354 222 4 20 357 11 360 8.81e-52 177
Msa0417280 MtrunA17_Chr5g0413951 33.667 300 195 3 44 342 31 327 4.49e-51 174
Msa0417280 MtrunA17_Chr5g0407991 31.548 336 216 2 20 342 9 343 2.05e-49 171
Msa0417280 MtrunA17_Chr4g0050931 30.240 334 189 3 16 344 8 302 2.10e-49 169
Msa0417280 MtrunA17_Chr5g0413931 33.962 318 195 6 44 358 30 335 4.89e-49 169
Msa0417280 MtrunA17_Chr1g0150151 28.490 351 242 3 17 365 8 351 1.79e-47 165
Msa0417280 MtrunA17_Chr8g0369841 29.464 336 223 2 20 342 9 343 1.65e-43 155
Msa0417280 MtrunA17_Chr5g0428881 27.273 319 231 1 23 340 21 339 2.77e-43 155
Msa0417280 MtrunA17_Chr6g0451211 30.631 333 217 6 44 371 36 359 5.09e-40 145
Msa0417280 MtrunA17_Chr3g0126091 25.145 346 253 3 18 359 9 352 9.76e-40 145
Msa0417280 MtrunA17_Chr4g0051001 27.961 304 218 1 16 318 27 330 1.28e-39 144
Msa0417280 MtrunA17_Chr5g0441761 25.672 335 239 4 24 358 18 342 2.07e-39 144
Msa0417280 MtrunA17_Chr6g0451201 31.494 308 202 4 45 352 37 335 9.21e-39 142
Msa0417280 MtrunA17_Chr5g0404811 32.906 234 149 4 128 357 1 230 9.28e-39 139
Msa0417280 MtrunA17_Chr6g0451171 28.902 346 237 5 21 364 13 351 2.81e-38 141
Msa0417280 MtrunA17_Chr1g0182261 45.033 151 79 4 211 358 78 227 5.56e-37 134
Msa0417280 MtrunA17_Chr1g0182261 36.585 82 52 0 9 90 3 84 3.12e-13 68.9
Msa0417280 MtrunA17_Chr6g0451251 33.003 303 193 5 45 344 37 332 9.81e-36 134
Msa0417280 MtrunA17_Chr3g0084091 29.098 244 164 2 101 340 11 249 2.60e-35 131
Msa0417280 MtrunA17_Chr6g0451261 25.876 371 256 6 17 371 8 375 3.68e-34 134
Msa0417280 MtrunA17_Chr1g0211801 28.175 252 172 3 20 268 11 256 5.13e-33 124
Msa0417280 MtrunA17_Chr5g0399281 27.941 340 237 6 24 359 12 347 5.15e-33 126
Msa0417280 MtrunA17_Chr2g0278021 33.790 219 136 3 134 345 1 217 4.64e-32 122
Msa0417280 MtrunA17_Chr5g0429001 24.585 301 220 3 72 365 3 303 5.31e-32 123
Msa0417280 MtrunA17_Chr6g0451191 31.466 232 142 3 134 359 1 221 5.58e-32 121
Msa0417280 MtrunA17_Chr4g0056081 27.576 330 233 6 24 348 18 346 1.07e-30 120
Msa0417280 MtrunA17_Chr8g0334711 33.668 199 128 3 21 218 11 206 2.00e-27 108
Msa0417280 MtrunA17_Chr1g0177231 52.128 94 43 1 266 359 26 117 1.82e-26 102
Msa0417280 MtrunA17_Chr1g0172891 52.809 89 40 1 271 359 9 95 1.13e-24 97.4
Msa0417280 MtrunA17_Chr1g0172881 32.099 162 96 3 108 268 1 149 2.85e-24 97.8
Msa0417280 MtrunA17_Chr8g0334721 38.532 109 67 0 232 340 1 109 4.62e-21 89.4
Msa0417280 MtrunA17_Chr8g0334731 31.000 200 113 5 21 217 12 189 3.11e-19 85.1
Msa0417280 MtrunA17_Chr4g0050911 39.683 126 69 2 97 215 8 133 3.15e-19 84.3
Msa0417280 MtrunA17_Chr5g0404801 34.483 116 76 0 18 133 5 120 5.35e-19 82.4
Msa0417280 MtrunA17_Chr2g0278031 33.621 116 77 0 16 131 10 125 2.12e-16 75.1
Msa0417280 MtrunA17_Chr4g0050921 33.333 99 66 0 220 318 3 101 4.77e-15 71.6
Msa0417280 MtrunA17_Chr6g0451241 51.667 60 29 0 285 344 24 83 4.23e-14 68.2
Msa0417280 MtrunA17_Chr1g0211811 39.437 71 43 0 273 343 4 74 9.35e-14 66.6
Msa0417280 MtrunA17_Chr8g0372571 44.444 63 28 1 248 303 2 64 7.09e-12 60.8
Msa0417280 MtrunA17_Chr4g0021721 55.556 45 20 0 248 292 2 46 9.53e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417280 AT4G08300.1 66.097 351 115 2 12 361 2 349 2.24e-168 476
Msa0417280 AT1G44800.1 61.944 360 132 3 12 369 2 358 6.67e-161 457
Msa0417280 AT1G21890.1 58.290 386 147 4 15 392 5 384 2.97e-156 446
Msa0417280 AT1G21890.2 62.701 311 109 1 15 318 5 315 1.48e-139 402
Msa0417280 AT4G08290.1 45.528 369 197 1 14 378 6 374 2.14e-122 359
Msa0417280 AT2G39510.1 51.811 359 165 3 16 368 3 359 4.01e-122 358
Msa0417280 AT2G37460.1 49.014 355 175 4 16 368 10 360 1.25e-121 357
Msa0417280 AT5G07050.1 44.156 385 197 3 14 392 11 383 1.23e-111 333
Msa0417280 AT5G13670.1 46.809 329 170 4 16 341 3 329 5.99e-102 307
Msa0417280 AT2G40900.1 43.976 332 173 3 20 345 10 334 1.28e-100 304
Msa0417280 AT3G56620.1 44.654 318 170 1 20 337 10 321 1.23e-99 301
Msa0417280 AT2G37450.2 46.667 345 153 6 14 354 2 319 3.49e-95 288
Msa0417280 AT4G08290.2 46.275 255 137 0 14 268 6 260 6.65e-84 258
Msa0417280 AT3G18200.2 36.628 344 214 2 4 347 18 357 5.06e-79 248
Msa0417280 AT1G75500.1 35.526 380 225 9 1 365 1 375 5.17e-78 246
Msa0417280 AT1G75500.2 35.526 380 225 9 1 365 1 375 5.17e-78 246
Msa0417280 AT3G53210.1 37.309 327 202 2 17 342 6 330 2.76e-74 236
Msa0417280 AT2G37450.3 52.941 238 103 4 106 340 1 232 8.95e-74 231
Msa0417280 AT4G30420.2 33.537 328 213 2 16 340 4 329 2.61e-66 216
Msa0417280 AT5G64700.1 33.807 352 210 3 20 361 7 345 1.14e-64 211
Msa0417280 AT4G30420.1 33.645 321 208 2 23 340 1 319 1.54e-64 211
Msa0417280 AT3G30340.1 35.048 311 198 2 45 355 35 341 1.91e-63 207
Msa0417280 AT1G09380.1 33.780 373 234 4 21 389 8 371 1.52e-62 206
Msa0417280 AT1G43650.1 34.018 341 212 3 20 357 6 336 7.62e-62 202
Msa0417280 AT2G37450.1 45.221 272 129 9 78 340 5 265 7.86e-61 199
Msa0417280 AT3G53210.2 40.081 247 145 2 97 342 29 273 2.53e-58 192
Msa0417280 AT4G28040.1 30.812 357 223 6 16 369 3 338 4.54e-54 183
Msa0417280 AT4G28040.5 30.812 357 223 6 16 369 3 338 4.54e-54 183
Msa0417280 AT4G28040.3 30.812 357 223 6 16 369 3 338 4.54e-54 183
Msa0417280 AT4G28040.4 30.812 357 223 6 16 369 3 338 4.54e-54 183
Msa0417280 AT4G28040.2 30.812 357 223 6 16 369 3 338 4.54e-54 183
Msa0417280 AT3G53210.3 35.798 257 162 2 17 272 6 260 5.34e-54 180
Msa0417280 AT1G25270.1 31.781 365 224 4 19 369 1 354 1.01e-53 182
Msa0417280 AT3G18200.1 39.301 229 135 2 119 347 3 227 3.19e-53 177
Msa0417280 AT4G01440.1 29.703 303 209 2 46 347 35 334 3.03e-51 176
Msa0417280 AT5G40240.1 29.859 355 239 5 17 367 16 364 6.13e-51 175
Msa0417280 AT5G40240.3 29.859 355 239 5 17 367 16 364 6.13e-51 175
Msa0417280 AT5G40240.2 29.859 355 239 5 17 367 30 378 6.45e-51 175
Msa0417280 AT1G01070.1 33.333 330 203 7 46 365 41 363 1.55e-50 174
Msa0417280 AT1G68170.2 30.199 351 236 2 17 358 9 359 8.58e-48 167
Msa0417280 AT4G01430.1 29.552 335 230 4 46 378 34 364 1.92e-47 166
Msa0417280 AT1G68170.1 30.086 349 235 2 19 358 1 349 8.08e-47 164
Msa0417280 AT5G40230.1 28.736 348 232 6 17 357 17 355 1.31e-46 164
Msa0417280 AT3G28050.1 30.904 343 226 6 17 355 8 343 1.34e-44 158
Msa0417280 AT4G01440.3 29.927 274 188 2 46 318 35 305 2.07e-44 156
Msa0417280 AT5G45370.2 30.488 328 210 4 34 346 33 357 2.69e-44 158
Msa0417280 AT5G45370.4 30.488 328 210 4 34 346 33 357 2.69e-44 158
Msa0417280 AT5G45370.1 31.310 313 203 3 34 346 33 333 6.19e-44 156
Msa0417280 AT1G11450.3 30.380 316 209 4 46 356 41 350 1.45e-42 152
Msa0417280 AT1G01070.2 32.686 309 191 7 67 365 15 316 1.74e-42 151
Msa0417280 AT3G45870.1 30.769 325 215 2 20 335 11 334 8.61e-42 151
Msa0417280 AT5G40210.1 28.902 346 220 7 24 365 16 339 1.64e-41 149
Msa0417280 AT1G70260.1 26.866 335 239 2 18 346 9 343 4.16e-41 149
Msa0417280 AT1G11450.5 30.225 311 206 4 51 356 2 306 6.62e-41 147
Msa0417280 AT1G11460.1 30.897 301 195 5 46 340 41 334 1.55e-40 147
Msa0417280 AT3G28070.2 30.000 260 178 3 104 361 8 265 5.89e-40 143
Msa0417280 AT3G28100.1 29.412 289 198 4 72 359 66 349 8.69e-40 145
Msa0417280 AT5G64700.2 32.171 258 160 2 20 267 7 259 2.92e-39 141
Msa0417280 AT3G28070.1 30.249 281 191 4 83 361 80 357 3.49e-39 144
Msa0417280 AT4G19185.1 28.796 382 250 5 22 386 22 398 3.65e-39 144
Msa0417280 AT3G30340.2 33.929 224 147 1 45 268 35 257 4.00e-39 141
Msa0417280 AT3G28080.1 28.328 293 196 5 72 359 66 349 4.16e-39 143
Msa0417280 AT1G11450.2 30.033 303 201 4 59 356 3 299 5.82e-39 142
Msa0417280 AT3G28080.5 29.183 257 177 3 104 359 8 260 6.18e-39 140
Msa0417280 AT3G28080.7 29.183 257 177 3 104 359 8 260 6.18e-39 140
Msa0417280 AT3G28080.8 29.183 257 177 3 104 359 8 260 6.18e-39 140
Msa0417280 AT3G28080.6 29.183 257 177 3 104 359 8 260 6.18e-39 140
Msa0417280 AT4G15540.1 28.280 343 230 4 17 358 13 340 9.00e-39 142
Msa0417280 AT4G15540.2 28.280 343 230 4 17 358 13 340 9.00e-39 142
Msa0417280 AT3G28130.5 32.917 240 159 2 104 342 10 248 1.06e-38 140
Msa0417280 AT3G28130.1 32.917 240 159 2 104 342 10 248 1.06e-38 140
Msa0417280 AT3G28080.2 29.183 257 177 3 104 359 89 341 5.56e-38 140
Msa0417280 AT3G28130.2 32.645 242 161 2 104 344 96 336 1.10e-37 139
Msa0417280 AT4G01430.2 30.249 281 194 2 46 324 34 314 1.18e-37 139
Msa0417280 AT5G47470.2 29.518 332 216 6 28 354 65 383 1.52e-37 140
Msa0417280 AT5G47470.1 29.518 332 216 6 28 354 37 355 1.62e-37 139
Msa0417280 AT1G43650.2 34.263 251 154 2 20 267 6 248 3.95e-37 135
Msa0417280 AT5G47470.3 29.697 330 214 6 28 352 65 381 4.30e-37 139
Msa0417280 AT4G24980.1 32.248 307 140 6 35 341 1 239 1.26e-36 134
Msa0417280 AT3G45870.8 29.545 308 207 2 20 318 11 317 3.47e-35 132
Msa0417280 AT4G01440.5 29.515 227 156 2 122 347 3 226 4.05e-35 130
Msa0417280 AT4G01440.2 29.515 227 156 2 122 347 3 226 4.05e-35 130
Msa0417280 AT4G01440.4 30.172 232 142 4 46 268 35 255 2.79e-34 128
Msa0417280 AT4G19185.2 29.085 306 195 5 98 386 20 320 4.55e-33 126
Msa0417280 AT1G11450.4 29.964 277 184 3 46 318 41 311 5.81e-32 123
Msa0417280 AT1G11450.1 29.658 263 174 4 99 356 2 258 8.30e-32 121
Msa0417280 AT5G45370.6 30.620 258 161 4 104 346 1 255 2.60e-31 120
Msa0417280 AT5G45370.5 30.620 258 161 4 104 346 1 255 2.60e-31 120
Msa0417280 AT1G60050.1 23.782 349 256 4 17 357 9 355 6.11e-31 122
Msa0417280 AT4G01450.2 28.763 299 205 2 46 343 35 326 1.66e-30 120
Msa0417280 AT3G28070.3 29.787 235 160 4 86 318 83 314 1.29e-29 117
Msa0417280 AT4G01450.1 27.372 274 191 2 46 318 35 301 6.80e-29 115
Msa0417280 AT3G28070.5 27.391 230 163 3 134 361 1 228 7.25e-29 112
Msa0417280 AT3G45870.9 29.658 263 173 3 20 273 11 270 1.12e-28 113
Msa0417280 AT4G16620.1 26.426 333 236 4 29 357 20 347 2.34e-28 114
Msa0417280 AT3G28080.9 26.872 227 161 3 134 359 1 223 2.46e-28 111
Msa0417280 AT3G28130.3 30.476 210 144 2 134 342 1 209 7.60e-28 110
Msa0417280 AT4G01450.4 27.830 212 145 2 46 256 35 239 1.63e-25 104
Msa0417280 AT3G28080.3 25.000 292 153 6 72 359 66 295 1.26e-24 103
Msa0417280 AT3G45870.5 32.075 212 134 2 133 335 49 259 1.52e-24 102
Msa0417280 AT5G45370.3 27.986 293 184 7 72 346 14 297 1.63e-24 103
Msa0417280 AT3G28080.4 25.391 256 134 4 104 359 8 206 2.16e-24 100
Msa0417280 AT3G28100.3 31.633 196 132 2 72 266 66 260 1.25e-22 96.7
Msa0417280 AT4G01430.3 25.108 231 168 3 149 378 1 227 2.66e-22 94.7
Msa0417280 AT4G01450.3 28.125 192 130 2 46 236 35 219 6.14e-22 94.4
Msa0417280 AT4G16620.4 27.451 255 177 3 106 357 1 250 8.58e-21 91.7
Msa0417280 AT4G16620.2 27.451 255 177 3 106 357 1 250 8.58e-21 91.7
Msa0417280 AT3G28130.4 32.143 168 112 2 104 270 96 262 1.80e-19 87.8
Msa0417280 AT3G45870.2 33.803 142 93 1 194 335 43 183 3.56e-18 83.6
Msa0417280 AT3G45870.6 30.256 195 126 2 133 318 49 242 4.94e-18 83.6
Msa0417280 AT3G45870.7 30.256 195 126 2 133 318 49 242 4.94e-18 83.6
Msa0417280 AT4G16620.3 26.316 209 149 2 29 236 20 224 2.59e-17 81.6
Msa0417280 AT3G28100.2 32.716 162 108 1 74 235 68 228 5.97e-17 80.5
Msa0417280 AT3G28130.6 46.875 64 34 0 104 167 96 159 1.16e-12 67.4
Msa0417280 AT3G45870.4 30.405 148 91 3 135 273 4 148 1.21e-11 62.8
Msa0417280 AT3G45870.3 30.667 150 92 3 133 273 49 195 1.84e-11 63.5

Find 110 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAACCATCTGACCAAAAT+TGG 0.153454 3_2:-64401161 Msa0417280:CDS
GGAACGGTTGTAACCGTTTC+AGG 0.162387 3_2:-64401273 Msa0417280:CDS
TTATAATGGCTCTCACTTTC+AGG 0.165762 3_2:-64401782 Msa0417280:intron
TCAACTTACCATTAGCATTT+TGG 0.208587 3_2:+64403709 None:intergenic
CACAGCGTAGCCAAAGTAAT+TGG 0.236548 3_2:-64401294 Msa0417280:CDS
GCTATATTGTCCCTTCAATT+TGG 0.246893 3_2:-64403648 Msa0417280:CDS
GGAGCTATTATCATCGTTAT+TGG 0.253163 3_2:-64400252 Msa0417280:CDS
CTGTGCCCATCACCCAATTT+TGG 0.276542 3_2:+64401148 None:intergenic
CTCTTGGTCTATGGAAGCAC+TGG 0.303108 3_2:+64403744 None:intergenic
CCCTGCCTATCAAATCATAA+AGG 0.351442 3_2:-64401223 Msa0417280:CDS
ATCAAGAATGGTACAAAATC+AGG 0.362733 3_2:-64400141 Msa0417280:CDS
GGCGGAGGCGTGGTGGTTGA+TGG 0.372027 3_2:+64401191 None:intergenic
TTGGTCTTTACACTGTGGTA+TGG 0.372386 3_2:-64400233 Msa0417280:CDS
TGGTCTTTACACTGTGGTAT+GGG 0.383227 3_2:-64400232 Msa0417280:CDS
TCTTGATTGGCAATTGATCC+TGG 0.385333 3_2:+64400157 None:intergenic
AACAGCATGGATTTGCTTGA+TGG 0.386644 3_2:-64400770 Msa0417280:CDS
GTCCCTTCAATTTGGTTACT+CGG 0.389202 3_2:-64403640 Msa0417280:CDS
CCCTTTATGATTTGATAGGC+AGG 0.393432 3_2:+64401222 None:intergenic
TGGTTGCTCGGTTGCGGCGG+AGG 0.396032 3_2:+64401176 None:intergenic
TATATCAAGTTGTTGTAGTT+GGG 0.408362 3_2:-64401118 Msa0417280:CDS
GGGGATGTACATCATTACTA+TGG 0.409950 3_2:-64403619 Msa0417280:CDS
TTATATCAAGTTGTTGTAGT+TGG 0.418246 3_2:-64401119 Msa0417280:CDS
TCCCTTCAATTTGGTTACTC+GGG 0.419264 3_2:-64403639 Msa0417280:CDS
GTCAGATGGTTGCTCGGTTG+CGG 0.424987 3_2:+64401170 None:intergenic
CCTGCCTATCAAATCATAAA+GGG 0.428868 3_2:-64401222 Msa0417280:CDS
TTATGTGAATTGTGAGTTTG+TGG 0.433308 3_2:+64403806 None:intergenic
TACAACCGTTCCAATTACTT+TGG 0.433847 3_2:+64401284 None:intergenic
TTGCTTGATGGGTATAATTG+AGG 0.438551 3_2:-64400758 Msa0417280:CDS
TGCTTGATGGGTATAATTGA+GGG 0.441349 3_2:-64400757 Msa0417280:CDS
ATGGAGGACCAAAATGCTAA+TGG 0.457402 3_2:-64403717 Msa0417280:CDS
CCCCATCTTCCTGAGGATAG+TGG 0.460250 3_2:-64403207 Msa0417280:CDS
TTAGCTGAACAAGTTCATCT+TGG 0.461729 3_2:-64400408 Msa0417280:CDS
CGTGAAGACACATCAGAGAT+AGG 0.464860 3_2:-64400192 Msa0417280:CDS
AAGCACACACACAAAACTAT+AGG 0.466762 3_2:+64403783 None:intergenic
TCAAGTTGTTGTAGTTGGGC+TGG 0.467278 3_2:-64401114 Msa0417280:CDS
GCCACTATCCTCAGGAAGAT+GGG 0.467307 3_2:+64403206 None:intergenic
TCAAACATGGTATGAGCCAT+TGG 0.469056 3_2:-64403590 Msa0417280:CDS
GCCATTATAAAAGTAATAGC+TGG 0.469113 3_2:+64401795 None:intergenic
GATAGGAAAAGGTGAAGGCC+AGG 0.472166 3_2:-64400175 Msa0417280:CDS
TTTCATAACCTCTAGCAGAT+AGG 0.473104 3_2:+64399983 None:intergenic
TGCCACTATCCTCAGGAAGA+TGG 0.473679 3_2:+64403205 None:intergenic
GCTGTTAGTGATAGCTCTGC+TGG 0.478245 3_2:+64400787 None:intergenic
GCAACCATCTGACCAAAATT+GGG 0.481594 3_2:-64401160 Msa0417280:CDS
AAGATGGGGAGAGTCATCTT+TGG 0.484154 3_2:+64403221 None:intergenic
GGGTCATAGGTTGGGACTCA+AGG 0.484228 3_2:-64400693 Msa0417280:CDS
ATGATTATCACTGCTGCATT+GGG 0.487028 3_2:-64400441 Msa0417280:CDS
TCAGGTTAGAGTCAGTGAAC+TGG 0.496846 3_2:-64401326 Msa0417280:intron
TTCATCCATCATGCTTGTGT+TGG 0.500581 3_2:+64400045 None:intergenic
AACCAGGGTGTGATATGCTC+TGG 0.500988 3_2:-64400540 Msa0417280:intron
GCTCGGTTGCGGCGGAGGCG+TGG 0.507173 3_2:+64401181 None:intergenic
GACACATCAGAGATAGGAAA+AGG 0.507769 3_2:-64400186 Msa0417280:CDS
TTTCAATTTACCTTCCTAAG+TGG 0.511236 3_2:-64399936 Msa0417280:three_prime_UTR
TTCCTGAGGATAGTGGCACT+TGG 0.515982 3_2:-64403200 Msa0417280:CDS
CTGAACAAGTTCATCTTGGA+AGG 0.517537 3_2:-64400404 Msa0417280:intron
GATCAATTGCCAATCAAGAA+TGG 0.518861 3_2:-64400153 Msa0417280:CDS
CTTTCGCGCTTGTGCTCGAA+AGG 0.520412 3_2:-64403521 Msa0417280:intron
AAATAAAAGTAAAGCCACTT+AGG 0.522073 3_2:+64399922 None:intergenic
TGTAACCGTTTCAGGAGCTA+TGG 0.524366 3_2:-64401265 Msa0417280:CDS
TCCCCGAGTAACCAAATTGA+AGG 0.524768 3_2:+64403637 None:intergenic
ATCTGACCAAAATTGGGTGA+TGG 0.525209 3_2:-64401154 Msa0417280:CDS
CCTTTATGATTTGATAGGCA+GGG 0.526071 3_2:+64401223 None:intergenic
AGAAATCAGAAGTATTAGAA+AGG 0.532359 3_2:+64399817 None:intergenic
TATGATTATCACTGCTGCAT+TGG 0.533858 3_2:-64400442 Msa0417280:CDS
GACATGAGTGTGTGGGTCAT+AGG 0.533991 3_2:-64400706 Msa0417280:CDS
TCTGACCAAAATTGGGTGAT+GGG 0.541178 3_2:-64401153 Msa0417280:CDS
CTTTCGAGCACAAGCGCGAA+AGG 0.544006 3_2:+64403522 None:intergenic
CATAACCATAGCTCCTGAAA+CGG 0.545710 3_2:+64401260 None:intergenic
TATGTGAATTGTGAGTTTGT+GGG 0.548106 3_2:+64403807 None:intergenic
GAGTGTGTGGGTCATAGGTT+GGG 0.550997 3_2:-64400701 Msa0417280:CDS
AGGGACAATATAGCAAGGTA+TGG 0.553205 3_2:+64403657 None:intergenic
AAAAGTAAAGCCACTTAGGA+AGG 0.554820 3_2:+64399926 None:intergenic
AACCAAGTGCCACTATCCTC+AGG 0.556943 3_2:+64403198 None:intergenic
TCTTGGTCTATGGAAGCACT+GGG 0.562257 3_2:+64403745 None:intergenic
CCCTTCAATTTGGTTACTCG+GGG 0.562657 3_2:-64403638 Msa0417280:CDS
ATAACATTATACTTTGAGAA+CGG 0.564806 3_2:+64399882 None:intergenic
ATGTTCCAACACAAGCATGA+TGG 0.565333 3_2:-64400050 Msa0417280:exon
TGAGTGTGTGGGTCATAGGT+TGG 0.566678 3_2:-64400702 Msa0417280:CDS
ACAGCATGGATTTGCTTGAT+GGG 0.567939 3_2:-64400769 Msa0417280:CDS
CTCCGTGTACCGTCATGTTG+TGG 0.575393 3_2:-64403562 Msa0417280:CDS
AGATCAAAACTTGTACAACA+TGG 0.577118 3_2:-64401868 Msa0417280:CDS
AGATGGTTGCTCGGTTGCGG+CGG 0.579960 3_2:+64401173 None:intergenic
CGGTTGCGGCGGAGGCGTGG+TGG 0.587210 3_2:+64401184 None:intergenic
GCTAATGGTAAGTTGAACAA+TGG 0.587597 3_2:-64403702 Msa0417280:CDS
ACTATGGTTTCTTTCAAACA+TGG 0.599226 3_2:-64403603 Msa0417280:CDS
GGTCTTTACACTGTGGTATG+GGG 0.600754 3_2:-64400231 Msa0417280:CDS
GCAGTGATAATCATACATAG+TGG 0.600906 3_2:+64400450 None:intergenic
CAGAGCTATCACTAACAGCA+TGG 0.605816 3_2:-64400783 Msa0417280:CDS
GGCCACAACATGACGGTACA+CGG 0.607059 3_2:+64403560 None:intergenic
GATCAAAACTTGTACAACAT+GGG 0.613658 3_2:-64401867 Msa0417280:CDS
GGAATGGCATATTATGTACA+AGG 0.617837 3_2:-64400519 Msa0417280:CDS
TGCCTATCAAATCATAAAGG+GGG 0.626849 3_2:-64401220 Msa0417280:CDS
CGTTATTGGTCTTTACACTG+TGG 0.630311 3_2:-64400238 Msa0417280:CDS
TTATAAAAGTAATAGCTGGA+AGG 0.634915 3_2:+64401799 None:intergenic
CCACTATCCTCAGGAAGATG+GGG 0.640156 3_2:+64403207 None:intergenic
GAAAGGAGTAATTATAATTG+CGG 0.640420 3_2:+64403539 None:intergenic
GGGTGTGATATGCTCTGGAA+TGG 0.640880 3_2:-64400535 Msa0417280:CDS
CTGCCTATCAAATCATAAAG+GGG 0.644691 3_2:-64401221 Msa0417280:CDS
CCCCGAGTAACCAAATTGAA+GGG 0.651140 3_2:+64403638 None:intergenic
GCCTATCAAATCATAAAGGG+GGG 0.651579 3_2:-64401219 Msa0417280:CDS
TTGAAAGAGACATGAGTGTG+TGG 0.655962 3_2:-64400714 Msa0417280:CDS
ATTGAAGGGACAATATAGCA+AGG 0.656111 3_2:+64403652 None:intergenic
ATGGTTATGACTTTGTACAA+AGG 0.661239 3_2:-64401246 Msa0417280:CDS
TAATTGCGGCCACAACATGA+CGG 0.665558 3_2:+64403553 None:intergenic
TCAGAGATAGGAAAAGGTGA+AGG 0.669132 3_2:-64400180 Msa0417280:CDS
TGACTCTCCCCATCTTCCTG+AGG 0.673443 3_2:-64403214 Msa0417280:CDS
CGTAGCCAAAGTAATTGGAA+CGG 0.674504 3_2:-64401289 Msa0417280:CDS
TGAAAGAGACATGAGTGTGT+GGG 0.686987 3_2:-64400713 Msa0417280:CDS
AGCTGGAAGGACATTAACAG+TGG 0.704261 3_2:+64401812 None:intergenic
GGAGTTGTAACTAGAGAACG+TGG 0.726192 3_2:-64400498 Msa0417280:CDS
GGTACACGGAGAGAATCCAA+TGG 0.752925 3_2:+64403574 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAATAAATAGTAAAAAT+TGG + chr3_2:64401555-64401574 None:intergenic 10.0%
!! TTTACTATTTATTTAGTAAA+AGG - chr3_2:64401558-64401577 Msa0417280:intron 10.0%
!!! TTGTTTTTTGTTTTTTTTTT+CGG - chr3_2:64401646-64401665 Msa0417280:intron 10.0%
!! TATTATAAAAAAAGATTCAT+TGG + chr3_2:64402220-64402239 None:intergenic 10.0%
!! CTCTAATTTAATTAAAATAT+TGG - chr3_2:64403302-64403321 Msa0417280:intron 10.0%
!!! TTTTCATTTTATAGTATATT+TGG - chr3_2:64403351-64403370 Msa0417280:intron 10.0%
!! TTTATATTTACAGAAAAACA+AGG - chr3_2:64400380-64400399 Msa0417280:intron 15.0%
!!! AAGAAAGATTATGAATTTTA+TGG + chr3_2:64400655-64400674 None:intergenic 15.0%
!! ATAAAATTCATAATCTTTCT+TGG - chr3_2:64400654-64400673 Msa0417280:intron 15.0%
!!! AAAGAAGATTTAACATTTTT+CGG - chr3_2:64400848-64400867 Msa0417280:intron 15.0%
!!! AGTTTTTTGTAACAAAAAAA+AGG + chr3_2:64400935-64400954 None:intergenic 15.0%
!!! TTTTTTTTGTTACAAAAAAC+TGG - chr3_2:64400934-64400953 Msa0417280:intron 15.0%
!!! ATTCATTTCTATTTACTTTT+AGG + chr3_2:64400976-64400995 None:intergenic 15.0%
!!! ATAGTTTAAACATTTTTCTA+TGG - chr3_2:64401616-64401635 Msa0417280:intron 15.0%
!! ATAAAAGATTAGAAAATTAG+AGG + chr3_2:64402165-64402184 None:intergenic 15.0%
!!! TATTGTTTTACTAATTAATC+AGG - chr3_2:64402280-64402299 Msa0417280:intron 15.0%
!!! ATAAAATAGATTATTTTGCA+CGG - chr3_2:64402597-64402616 Msa0417280:intron 15.0%
!! TTTATGATAATTATATAACC+AGG - chr3_2:64403068-64403087 Msa0417280:intron 15.0%
!! TTATGATAATTATATAACCA+GGG - chr3_2:64403069-64403088 Msa0417280:intron 15.0%
!! TTATTGATAGAGATTAGAAA+CGG - chr3_2:64400180-64400199 Msa0417280:CDS 20.0%
!!! ACCTCTAAAAAAACATTTTT+CGG - chr3_2:64400876-64400895 Msa0417280:intron 20.0%
!! TTTGTAACAAAAAAAAGGTA+AGG + chr3_2:64400930-64400949 None:intergenic 20.0%
!! TCATTTCTTAGGATAATATA+TGG - chr3_2:64401115-64401134 Msa0417280:CDS 20.0%
!! ATATATGAATTGAAGTGATT+AGG + chr3_2:64401399-64401418 None:intergenic 20.0%
!!! TAATATATAAATTGACTCGA+TGG + chr3_2:64401430-64401449 None:intergenic 20.0%
!!! GATGTGATAATATAATTTTC+TGG - chr3_2:64401469-64401488 Msa0417280:intron 20.0%
!!! AGTTTTTGTTTTTGTTTTCA+TGG + chr3_2:64401888-64401907 None:intergenic 20.0%
!! AGAATATATATGTTGATGTT+TGG + chr3_2:64402570-64402589 None:intergenic 20.0%
!!! AAGATTTTTTTTCCCTATAA+CGG - chr3_2:64402663-64402682 Msa0417280:intron 20.0%
!!! TGACATATTTCTTTGAAAAA+TGG + chr3_2:64402727-64402746 None:intergenic 20.0%
!! TTCACTAAGTAAATAAATAG+AGG + chr3_2:64402987-64403006 None:intergenic 20.0%
!!! TGTTACATATTTTAAGAGAA+GGG + chr3_2:64403252-64403271 None:intergenic 20.0%
!!! TTGTTACATATTTTAAGAGA+AGG + chr3_2:64403253-64403272 None:intergenic 20.0%
!!! ATAACATTATACTTTGAGAA+CGG + chr3_2:64403745-64403764 None:intergenic 20.0%
! GAAAGGAGTAATTATAATTG+CGG + chr3_2:64400088-64400107 None:intergenic 25.0%
! ATTAGGAATATTGTAGAGAT+AGG + chr3_2:64400608-64400627 None:intergenic 25.0%
! AATTCATAATCTTTCTTGGT+TGG - chr3_2:64400658-64400677 Msa0417280:intron 25.0%
! ATTCATAATCTTTCTTGGTT+GGG - chr3_2:64400659-64400678 Msa0417280:intron 25.0%
! AGGAAATCAAAAAGATTCAT+AGG - chr3_2:64400685-64400704 Msa0417280:CDS 25.0%
!!! TTTTTTTAAAACCTTCTGCT+TGG - chr3_2:64400758-64400777 Msa0417280:CDS 25.0%
!!! ACCGAAAAATGTTTTTTTAG+AGG + chr3_2:64400880-64400899 None:intergenic 25.0%
!!! ATTTCTATTTACTTTTAGGC+TGG + chr3_2:64400972-64400991 None:intergenic 25.0%
! AAGAAATGAAATCACACAAT+GGG + chr3_2:64401104-64401123 None:intergenic 25.0%
! TAAGAAATGAAATCACACAA+TGG + chr3_2:64401105-64401124 None:intergenic 25.0%
! ATTGTGTGATTTCATTTCTT+AGG - chr3_2:64401104-64401123 Msa0417280:CDS 25.0%
!!! GGATAATATATGGTTTTATG+AGG - chr3_2:64401125-64401144 Msa0417280:CDS 25.0%
! AATAGCACGAATTAAGATAA+GGG + chr3_2:64401330-64401349 None:intergenic 25.0%
! TTAGCGAGAAAAATAAATTG+CGG - chr3_2:64401361-64401380 Msa0417280:intron 25.0%
! AAAAATTGGTCCTAATTCAT+GGG + chr3_2:64401541-64401560 None:intergenic 25.0%
! TAAAAATTGGTCCTAATTCA+TGG + chr3_2:64401542-64401561 None:intergenic 25.0%
!! TTAAACATTTTTCTATGGCT+AGG - chr3_2:64401621-64401640 Msa0417280:intron 25.0%
!! TGTTGTTGATAAAATGAAAC+AGG - chr3_2:64401725-64401744 Msa0417280:intron 25.0%
! TTATAAAAGTAATAGCTGGA+AGG + chr3_2:64401828-64401847 None:intergenic 25.0%
!!! TCCAGCTATTACTTTTATAA+TGG - chr3_2:64401828-64401847 Msa0417280:CDS 25.0%
!! TGCTTATCTTAATTCAAGTT+TGG + chr3_2:64402105-64402124 None:intergenic 25.0%
!! TTATATCAAGTTGTTGTAGT+TGG - chr3_2:64402505-64402524 Msa0417280:intron 25.0%
!! TATATCAAGTTGTTGTAGTT+GGG - chr3_2:64402506-64402525 Msa0417280:intron 25.0%
! TATGTTGATGTTTGGTTAAT+TGG + chr3_2:64402562-64402581 None:intergenic 25.0%
! AAATCTTTAGCCATATCTAA+CGG + chr3_2:64402650-64402669 None:intergenic 25.0%
!!! GTTACATATTTTAAGAGAAG+GGG + chr3_2:64403251-64403270 None:intergenic 25.0%
! AAATAAAAGTAAAGCCACTT+AGG + chr3_2:64403705-64403724 None:intergenic 25.0%
! TCAACTTACCATTAGCATTT+TGG + chr3_2:64399918-64399937 None:intergenic 30.0%
ACTATGGTTTCTTTCAAACA+TGG - chr3_2:64400021-64400040 Msa0417280:three_prime_UTR 30.0%
GTTGAAAGAGACATAAAAAG+AGG + chr3_2:64400151-64400170 None:intergenic 30.0%
CTTGACAACAAAATTTGAGA+CGG - chr3_2:64400249-64400268 Msa0417280:CDS 30.0%
AAACCTTGTTAAGCTTATGA+AGG + chr3_2:64400349-64400368 None:intergenic 30.0%
TATCTTCATGATCATGAGTT+AGG - chr3_2:64400533-64400552 Msa0417280:CDS 30.0%
!! ACTTTTAGGCTGGTTAAATA+AGG + chr3_2:64400962-64400981 None:intergenic 30.0%
! TTTCGTCCTTATGATTTTTG+TGG + chr3_2:64401076-64401095 None:intergenic 30.0%
AGAAATGAAATCACACAATG+GGG + chr3_2:64401103-64401122 None:intergenic 30.0%
!!! ATATGGTTTTATGAGGCATT+TGG - chr3_2:64401132-64401151 Msa0417280:CDS 30.0%
!!! TATGGTTTTATGAGGCATTT+GGG - chr3_2:64401133-64401152 Msa0417280:CDS 30.0%
ATTGTGTAACTTGAAGAGTT+TGG + chr3_2:64401215-64401234 None:intergenic 30.0%
CAATAGCACGAATTAAGATA+AGG + chr3_2:64401331-64401350 None:intergenic 30.0%
CTTATCTTAATTCGTGCTAT+TGG - chr3_2:64401329-64401348 Msa0417280:intron 30.0%
AAAATTGGTCCTAATTCATG+GGG + chr3_2:64401540-64401559 None:intergenic 30.0%
AGATCAAAACTTGTACAACA+TGG - chr3_2:64401756-64401775 Msa0417280:intron 30.0%
GATCAAAACTTGTACAACAT+GGG - chr3_2:64401757-64401776 Msa0417280:intron 30.0%
GCCATTATAAAAGTAATAGC+TGG + chr3_2:64401832-64401851 None:intergenic 30.0%
GTGTTCCTGGAAAAAATAAT+TGG - chr3_2:64401949-64401968 Msa0417280:intron 30.0%
!!! GGATTCCAATTATTTTTTCC+AGG + chr3_2:64401957-64401976 None:intergenic 30.0%
ATGGTTATGACTTTGTACAA+AGG - chr3_2:64402378-64402397 Msa0417280:intron 30.0%
!! TAACTTATGTTGCTACTTTG+TGG - chr3_2:64402787-64402806 Msa0417280:intron 30.0%
!! AACTTATGTTGCTACTTTGT+GGG - chr3_2:64402788-64402807 Msa0417280:intron 30.0%
! GATTTTGTACCATTCTTGAT+TGG + chr3_2:64403483-64403502 None:intergenic 30.0%
ATCAAGAATGGTACAAAATC+AGG - chr3_2:64403483-64403502 Msa0417280:intron 30.0%
!!! CCTTTTTTCAATTTTTCAGC+TGG + chr3_2:64403543-64403562 None:intergenic 30.0%
CCAGCTGAAAAATTGAAAAA+AGG - chr3_2:64403540-64403559 Msa0417280:CDS 30.0%
! AGGTTATGAAAGATTTTCTG+CGG - chr3_2:64403653-64403672 Msa0417280:CDS 30.0%
TTTCAATTTACCTTCCTAAG+TGG - chr3_2:64403688-64403707 Msa0417280:CDS 30.0%
TTTGAGAACGGAAAAAGTTA+AGG + chr3_2:64403733-64403752 None:intergenic 30.0%
AAGCACACACACAAAACTAT+AGG + chr3_2:64399844-64399863 None:intergenic 35.0%
TCCATAGACCAAGAGAAAAA+TGG - chr3_2:64399888-64399907 Msa0417280:three_prime_UTR 35.0%
!! TCCATTTTTCTCTTGGTCTA+TGG + chr3_2:64399892-64399911 None:intergenic 35.0%
ATAGACCAAGAGAAAAATGG+AGG - chr3_2:64399891-64399910 Msa0417280:three_prime_UTR 35.0%
! GCTAATGGTAAGTTGAACAA+TGG - chr3_2:64399922-64399941 Msa0417280:three_prime_UTR 35.0%
ATTGAAGGGACAATATAGCA+AGG + chr3_2:64399975-64399994 None:intergenic 35.0%
GCTATATTGTCCCTTCAATT+TGG - chr3_2:64399976-64399995 Msa0417280:three_prime_UTR 35.0%
AAAGAGGAAGAAAATGATCG+AGG + chr3_2:64400135-64400154 None:intergenic 35.0%
TTGCCTTCATAAGCTTAACA+AGG - chr3_2:64400343-64400362 Msa0417280:intron 35.0%
GATACTGCGAATATAGCATT+AGG + chr3_2:64400483-64400502 None:intergenic 35.0%
! CTTATGATTTTTGTGGTGGT+GGG + chr3_2:64401069-64401088 None:intergenic 35.0%
AATTTCACAACACGAGAGTA+TGG - chr3_2:64401185-64401204 Msa0417280:CDS 35.0%
TTTAGCAATCCCCATGAATT+AGG - chr3_2:64401528-64401547 Msa0417280:intron 35.0%
!! TACAAGTTTTGATCTAGCAC+TGG + chr3_2:64401751-64401770 None:intergenic 35.0%
TTATAATGGCTCTCACTTTC+AGG - chr3_2:64401842-64401861 Msa0417280:CDS 35.0%
AAACTAATGTGCTTACGCAA+AGG - chr3_2:64401903-64401922 Msa0417280:intron 35.0%
TCCTCGTCCACTAATTAATA+TGG + chr3_2:64402000-64402019 None:intergenic 35.0%
GTGTGACAAACTAGTAGTAA+GGG + chr3_2:64402034-64402053 None:intergenic 35.0%
AGTGTGACAAACTAGTAGTA+AGG + chr3_2:64402035-64402054 None:intergenic 35.0%
TACAACCGTTCCAATTACTT+TGG + chr3_2:64402343-64402362 None:intergenic 35.0%
CCTTTATGATTTGATAGGCA+GGG + chr3_2:64402404-64402423 None:intergenic 35.0%
CCTGCCTATCAAATCATAAA+GGG - chr3_2:64402402-64402421 Msa0417280:intron 35.0%
CTGCCTATCAAATCATAAAG+GGG - chr3_2:64402403-64402422 Msa0417280:intron 35.0%
TGCCTATCAAATCATAAAGG+GGG - chr3_2:64402404-64402423 Msa0417280:intron 35.0%
! TTGCTTGATGGGTATAATTG+AGG - chr3_2:64402866-64402885 Msa0417280:intron 35.0%
! TGCTTGATGGGTATAATTGA+GGG - chr3_2:64402867-64402886 Msa0417280:intron 35.0%
GGAATGGCATATTATGTACA+AGG - chr3_2:64403105-64403124 Msa0417280:intron 35.0%
CTGAAAGATGTGACAAAAAC+TGG + chr3_2:64403153-64403172 None:intergenic 35.0%
GCAGTGATAATCATACATAG+TGG + chr3_2:64403177-64403196 None:intergenic 35.0%
TATGATTATCACTGCTGCAT+TGG - chr3_2:64403182-64403201 Msa0417280:intron 35.0%
ATGATTATCACTGCTGCATT+GGG - chr3_2:64403183-64403202 Msa0417280:intron 35.0%
TTAGCTGAACAAGTTCATCT+TGG - chr3_2:64403216-64403235 Msa0417280:CDS 35.0%
GGAGCTATTATCATCGTTAT+TGG - chr3_2:64403372-64403391 Msa0417280:intron 35.0%
GATCAATTGCCAATCAAGAA+TGG - chr3_2:64403471-64403490 Msa0417280:intron 35.0%
! TCAGGATCAGACATTTTTGA+TGG - chr3_2:64403501-64403520 Msa0417280:intron 35.0%
! CAATTTTTCCTATCTGCTAG+AGG - chr3_2:64403633-64403652 Msa0417280:CDS 35.0%
TTTCATAACCTCTAGCAGAT+AGG + chr3_2:64403644-64403663 None:intergenic 35.0%
AAAAGTAAAGCCACTTAGGA+AGG + chr3_2:64403701-64403720 None:intergenic 35.0%
!! TTGGTCCTCCATTTTTCTCT+TGG + chr3_2:64399899-64399918 None:intergenic 40.0%
ATGGAGGACCAAAATGCTAA+TGG - chr3_2:64399907-64399926 Msa0417280:three_prime_UTR 40.0%
AGGGACAATATAGCAAGGTA+TGG + chr3_2:64399970-64399989 None:intergenic 40.0%
GTCCCTTCAATTTGGTTACT+CGG - chr3_2:64399984-64400003 Msa0417280:three_prime_UTR 40.0%
TCCCTTCAATTTGGTTACTC+GGG - chr3_2:64399985-64400004 Msa0417280:three_prime_UTR 40.0%
GGGGATGTACATCATTACTA+TGG - chr3_2:64400005-64400024 Msa0417280:three_prime_UTR 40.0%
TCAAACATGGTATGAGCCAT+TGG - chr3_2:64400034-64400053 Msa0417280:exon 40.0%
AGGAAGAAAATGATCGAGGA+AGG + chr3_2:64400131-64400150 None:intergenic 40.0%
TTTCCTTGAGTAAGGCTCTT+CGG - chr3_2:64400447-64400466 Msa0417280:CDS 40.0%
ACTGCGAATATAGCATTAGG+TGG + chr3_2:64400480-64400499 None:intergenic 40.0%
CATAATCTTTCTTGGTTGGG+TGG - chr3_2:64400662-64400681 Msa0417280:intron 40.0%
AAATTGCAAGACCAAGCAGA+AGG + chr3_2:64400772-64400791 None:intergenic 40.0%
GAAAATGCAGGGCAATATGA+GGG + chr3_2:64401017-64401036 None:intergenic 40.0%
AGAAAATGCAGGGCAATATG+AGG + chr3_2:64401018-64401037 None:intergenic 40.0%
! TATTGCCCTGCATTTTCTAG+CGG - chr3_2:64401020-64401039 Msa0417280:intron 40.0%
! CCTTATGATTTTTGTGGTGG+TGG + chr3_2:64401070-64401089 None:intergenic 40.0%
CCACCACCACAAAAATCATA+AGG - chr3_2:64401067-64401086 Msa0417280:intron 40.0%
! CGTCCTTATGATTTTTGTGG+TGG + chr3_2:64401073-64401092 None:intergenic 40.0%
GCGAGAAAAATAAATTGCGG+AGG - chr3_2:64401364-64401383 Msa0417280:intron 40.0%
TAGCTAGAATTGTGTGTTCC+TGG - chr3_2:64401936-64401955 Msa0417280:intron 40.0%
AATCCGACAATTTCGAACCA+TGG - chr3_2:64401972-64401991 Msa0417280:intron 40.0%
ATCCGACAATTTCGAACCAT+GGG - chr3_2:64401973-64401992 Msa0417280:intron 40.0%
CACTAATTAATATGGCCCCA+TGG + chr3_2:64401992-64402011 None:intergenic 40.0%
CATGGGGCCATATTAATTAG+TGG - chr3_2:64401990-64402009 Msa0417280:intron 40.0%
! GCCATATTAATTAGTGGACG+AGG - chr3_2:64401996-64402015 Msa0417280:intron 40.0%
CGTAGCCAAAGTAATTGGAA+CGG - chr3_2:64402335-64402354 Msa0417280:intron 40.0%
CATAACCATAGCTCCTGAAA+CGG + chr3_2:64402367-64402386 None:intergenic 40.0%
CCCTGCCTATCAAATCATAA+AGG - chr3_2:64402401-64402420 Msa0417280:intron 40.0%
CCCTTTATGATTTGATAGGC+AGG + chr3_2:64402405-64402424 None:intergenic 40.0%
GCCTATCAAATCATAAAGGG+GGG - chr3_2:64402405-64402424 Msa0417280:intron 40.0%
TCCCCCCTTTATGATTTGAT+AGG + chr3_2:64402409-64402428 None:intergenic 40.0%
TATCAAATCATAAAGGGGGG+AGG - chr3_2:64402408-64402427 Msa0417280:intron 40.0%
!! ATTTTGGTCAGATGGTTGCT+CGG + chr3_2:64402463-64402482 None:intergenic 40.0%
AGCAACCATCTGACCAAAAT+TGG - chr3_2:64402463-64402482 Msa0417280:intron 40.0%
GCAACCATCTGACCAAAATT+GGG - chr3_2:64402464-64402483 Msa0417280:intron 40.0%
!! ATCACCCAATTTTGGTCAGA+TGG + chr3_2:64402471-64402490 None:intergenic 40.0%
ATCTGACCAAAATTGGGTGA+TGG - chr3_2:64402470-64402489 Msa0417280:intron 40.0%
TCTGACCAAAATTGGGTGAT+GGG - chr3_2:64402471-64402490 Msa0417280:intron 40.0%
! AACAGCATGGATTTGCTTGA+TGG - chr3_2:64402854-64402873 Msa0417280:intron 40.0%
! ACAGCATGGATTTGCTTGAT+GGG - chr3_2:64402855-64402874 Msa0417280:intron 40.0%
TTGAAAGAGACATGAGTGTG+TGG - chr3_2:64402910-64402929 Msa0417280:intron 40.0%
TGAAAGAGACATGAGTGTGT+GGG - chr3_2:64402911-64402930 Msa0417280:intron 40.0%
CTGAACAAGTTCATCTTGGA+AGG - chr3_2:64403220-64403239 Msa0417280:CDS 40.0%
!! CGTTATTGGTCTTTACACTG+TGG - chr3_2:64403386-64403405 Msa0417280:intron 40.0%
! TTGGTCTTTACACTGTGGTA+TGG - chr3_2:64403391-64403410 Msa0417280:intron 40.0%
TGGTCTTTACACTGTGGTAT+GGG - chr3_2:64403392-64403411 Msa0417280:intron 40.0%
GACACATCAGAGATAGGAAA+AGG - chr3_2:64403438-64403457 Msa0417280:intron 40.0%
TCAGAGATAGGAAAAGGTGA+AGG - chr3_2:64403444-64403463 Msa0417280:intron 40.0%
TCTTGATTGGCAATTGATCC+TGG + chr3_2:64403470-64403489 None:intergenic 40.0%
ATGTTCCAACACAAGCATGA+TGG - chr3_2:64403574-64403593 Msa0417280:CDS 40.0%
TTCATCCATCATGCTTGTGT+TGG + chr3_2:64403582-64403601 None:intergenic 40.0%
!! TCTTGGTCTATGGAAGCACT+GGG + chr3_2:64399882-64399901 None:intergenic 45.0%
CCCCGAGTAACCAAATTGAA+GGG + chr3_2:64399989-64400008 None:intergenic 45.0%
CCCTTCAATTTGGTTACTCG+GGG - chr3_2:64399986-64400005 Msa0417280:three_prime_UTR 45.0%
TCCCCGAGTAACCAAATTGA+AGG + chr3_2:64399990-64400009 None:intergenic 45.0%
TAATTGCGGCCACAACATGA+CGG + chr3_2:64400074-64400093 None:intergenic 45.0%
AAGATGGGGAGAGTCATCTT+TGG + chr3_2:64400406-64400425 None:intergenic 45.0%
GCACTTGGTTTCCTTGAGTA+AGG - chr3_2:64400439-64400458 Msa0417280:CDS 45.0%
TTCCTTGAGTAAGGCTCTTC+GGG - chr3_2:64400448-64400467 Msa0417280:CDS 45.0%
AATCTTTCTTGGTTGGGTGG+AGG - chr3_2:64400665-64400684 Msa0417280:intron 45.0%
TGAGTCCGCTAGAAAATGCA+GGG + chr3_2:64401028-64401047 None:intergenic 45.0%
ATGAGTCCGCTAGAAAATGC+AGG + chr3_2:64401029-64401048 None:intergenic 45.0%
GGTCTTCTACCTCTATTGCA+CGG - chr3_2:64401154-64401173 Msa0417280:CDS 45.0%
GTCTTCTACCTCTATTGCAC+GGG - chr3_2:64401155-64401174 Msa0417280:CDS 45.0%
TCATTGTACCCGTGCAATAG+AGG + chr3_2:64401166-64401185 None:intergenic 45.0%
GGGGATTGCTAAACAGCTAT+TGG + chr3_2:64401521-64401540 None:intergenic 45.0%
AGCTGGAAGGACATTAACAG+TGG + chr3_2:64401815-64401834 None:intergenic 45.0%
TCCGACAATTTCGAACCATG+GGG - chr3_2:64401974-64401993 Msa0417280:intron 45.0%
TCAGGTTAGAGTCAGTGAAC+TGG - chr3_2:64402298-64402317 Msa0417280:intron 45.0%
CACAGCGTAGCCAAAGTAAT+TGG - chr3_2:64402330-64402349 Msa0417280:intron 45.0%
TGTAACCGTTTCAGGAGCTA+TGG - chr3_2:64402359-64402378 Msa0417280:intron 45.0%
! TCAAGTTGTTGTAGTTGGGC+TGG - chr3_2:64402510-64402529 Msa0417280:intron 45.0%
! GTTGTGCTGACCGTTAGATA+TGG - chr3_2:64402637-64402656 Msa0417280:intron 45.0%
CAATTGTGGGGACCGTTATA+GGG + chr3_2:64402678-64402697 None:intergenic 45.0%
ACAATTGTGGGGACCGTTAT+AGG + chr3_2:64402679-64402698 None:intergenic 45.0%
ATAACGGTCCCCACAATTGT+TGG - chr3_2:64402679-64402698 Msa0417280:intron 45.0%
CAGAGCTATCACTAACAGCA+TGG - chr3_2:64402841-64402860 Msa0417280:intron 45.0%
GGAGTTGTAACTAGAGAACG+TGG - chr3_2:64403126-64403145 Msa0417280:intron 45.0%
GGTCTTTACACTGTGGTATG+GGG - chr3_2:64403393-64403412 Msa0417280:intron 45.0%
CGTGAAGACACATCAGAGAT+AGG - chr3_2:64403432-64403451 Msa0417280:intron 45.0%
!! AATAGATAAATAAATATATT+AGG + chr3_2:64400625-64400644 None:intergenic 5.0%
!!! TATATATTATTTTAAAGTTT+TGG - chr3_2:64401441-64401460 Msa0417280:intron 5.0%
! CTCTTGGTCTATGGAAGCAC+TGG + chr3_2:64399883-64399902 None:intergenic 50.0%
GGTACACGGAGAGAATCCAA+TGG + chr3_2:64400053-64400072 None:intergenic 50.0%
CCACTATCCTCAGGAAGATG+GGG + chr3_2:64400420-64400439 None:intergenic 50.0%
GCCACTATCCTCAGGAAGAT+GGG + chr3_2:64400421-64400440 None:intergenic 50.0%
TGCCACTATCCTCAGGAAGA+TGG + chr3_2:64400422-64400441 None:intergenic 50.0%
! TTCCTGAGGATAGTGGCACT+TGG - chr3_2:64400424-64400443 Msa0417280:CDS 50.0%
! AACCAAGTGCCACTATCCTC+AGG + chr3_2:64400429-64400448 None:intergenic 50.0%
ATCCCGAAGAGCCTTACTCA+AGG + chr3_2:64400453-64400472 None:intergenic 50.0%
GCCCCATGGTTCGAAATTGT+CGG + chr3_2:64401978-64401997 None:intergenic 50.0%
GGAACGGTTGTAACCGTTTC+AGG - chr3_2:64402351-64402370 Msa0417280:intron 50.0%
! CTGTGCCCATCACCCAATTT+TGG + chr3_2:64402479-64402498 None:intergenic 50.0%
CGGTCAGCACAACTGTTGTA+CGG + chr3_2:64402630-64402649 None:intergenic 50.0%
AGCACGGTCCAACAATTGTG+GGG + chr3_2:64402690-64402709 None:intergenic 50.0%
CAGCACGGTCCAACAATTGT+GGG + chr3_2:64402691-64402710 None:intergenic 50.0%
GGATCTCTTGTGAAGCAGCA+CGG + chr3_2:64402706-64402725 None:intergenic 50.0%
! GCTGTTAGTGATAGCTCTGC+TGG + chr3_2:64402840-64402859 None:intergenic 50.0%
GACATGAGTGTGTGGGTCAT+AGG - chr3_2:64402918-64402937 Msa0417280:intron 50.0%
TGAGTGTGTGGGTCATAGGT+TGG - chr3_2:64402922-64402941 Msa0417280:intron 50.0%
GAGTGTGTGGGTCATAGGTT+GGG - chr3_2:64402923-64402942 Msa0417280:intron 50.0%
AACCAGGGTGTGATATGCTC+TGG - chr3_2:64403084-64403103 Msa0417280:intron 50.0%
TTCCAGAGCATATCACACCC+TGG + chr3_2:64403089-64403108 None:intergenic 50.0%
!! GGGTGTGATATGCTCTGGAA+TGG - chr3_2:64403089-64403108 Msa0417280:intron 50.0%
GATAGGAAAAGGTGAAGGCC+AGG - chr3_2:64403449-64403468 Msa0417280:intron 50.0%
CTCCGTGTACCGTCATGTTG+TGG - chr3_2:64400062-64400081 Msa0417280:CDS 55.0%
GGCCACAACATGACGGTACA+CGG + chr3_2:64400067-64400086 None:intergenic 55.0%
CTTTCGAGCACAAGCGCGAA+AGG + chr3_2:64400105-64400124 None:intergenic 55.0%
CTTTCGCGCTTGTGCTCGAA+AGG - chr3_2:64400103-64400122 Msa0417280:CDS 55.0%
TGACTCTCCCCATCTTCCTG+AGG - chr3_2:64400410-64400429 Msa0417280:CDS 55.0%
CCCCATCTTCCTGAGGATAG+TGG - chr3_2:64400417-64400436 Msa0417280:CDS 55.0%
GTCAGATGGTTGCTCGGTTG+CGG + chr3_2:64402457-64402476 None:intergenic 55.0%
GCAGCACGGTCCAACAATTG+TGG + chr3_2:64402692-64402711 None:intergenic 55.0%
! GGGTCATAGGTTGGGACTCA+AGG - chr3_2:64402931-64402950 Msa0417280:intron 55.0%
AGATGGTTGCTCGGTTGCGG+CGG + chr3_2:64402454-64402473 None:intergenic 60.0%
! GGCGGAGGCGTGGTGGTTGA+TGG + chr3_2:64402436-64402455 None:intergenic 70.0%
TGGTTGCTCGGTTGCGGCGG+AGG + chr3_2:64402451-64402470 None:intergenic 70.0%
!! CGGTTGCGGCGGAGGCGTGG+TGG + chr3_2:64402443-64402462 None:intergenic 80.0%
! GCTCGGTTGCGGCGGAGGCG+TGG + chr3_2:64402446-64402465 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 64399819 64403827 64399819 ID=Msa0417280;Name=Msa0417280
chr3_2 mRNA 64399819 64403827 64399819 ID=Msa0417280-mRNA-1;Parent=Msa0417280;Name=Msa0417280-mRNA-1;_AED=0.31;_eAED=0.31;_QI=88|1|1|1|1|1|7|234|394
chr3_2 exon 64399819 64400281 64399819 ID=Msa0417280-mRNA-1:exon:14308;Parent=Msa0417280-mRNA-1
chr3_2 exon 64400405 64400556 64400405 ID=Msa0417280-mRNA-1:exon:14307;Parent=Msa0417280-mRNA-1
chr3_2 exon 64400672 64400830 64400672 ID=Msa0417280-mRNA-1:exon:14306;Parent=Msa0417280-mRNA-1
chr3_2 exon 64401098 64401344 64401098 ID=Msa0417280-mRNA-1:exon:14305;Parent=Msa0417280-mRNA-1
chr3_2 exon 64401783 64401899 64401783 ID=Msa0417280-mRNA-1:exon:14304;Parent=Msa0417280-mRNA-1
chr3_2 exon 64403191 64403253 64403191 ID=Msa0417280-mRNA-1:exon:14303;Parent=Msa0417280-mRNA-1
chr3_2 exon 64403522 64403827 64403522 ID=Msa0417280-mRNA-1:exon:14302;Parent=Msa0417280-mRNA-1
chr3_2 five_prime_UTR 64403740 64403827 64403740 ID=Msa0417280-mRNA-1:five_prime_utr;Parent=Msa0417280-mRNA-1
chr3_2 CDS 64403522 64403739 64403522 ID=Msa0417280-mRNA-1:cds;Parent=Msa0417280-mRNA-1
chr3_2 CDS 64403191 64403253 64403191 ID=Msa0417280-mRNA-1:cds;Parent=Msa0417280-mRNA-1
chr3_2 CDS 64401783 64401899 64401783 ID=Msa0417280-mRNA-1:cds;Parent=Msa0417280-mRNA-1
chr3_2 CDS 64401098 64401344 64401098 ID=Msa0417280-mRNA-1:cds;Parent=Msa0417280-mRNA-1
chr3_2 CDS 64400672 64400830 64400672 ID=Msa0417280-mRNA-1:cds;Parent=Msa0417280-mRNA-1
chr3_2 CDS 64400405 64400556 64400405 ID=Msa0417280-mRNA-1:cds;Parent=Msa0417280-mRNA-1
chr3_2 CDS 64400053 64400281 64400053 ID=Msa0417280-mRNA-1:cds;Parent=Msa0417280-mRNA-1
chr3_2 three_prime_UTR 64399819 64400052 64399819 ID=Msa0417280-mRNA-1:three_prime_utr;Parent=Msa0417280-mRNA-1
Gene Sequence

>Msa0417280

ATGGAGGACCAAAATGCTAATGGTAAGTTGAACAATGGAGCACTGCTTCGCAAGATTAAACCATACCTTGCTATATTGTCCCTTCAATTTGGTTACTCGGGGATGTACATCATTACTATGGTTTCTTTCAAACATGGTATGAGCCATTGGATTCTCTCCGTGTACCGTCATGTTGTGGCCGCAATTATAATTACTCCTTTCGCGCTTGTGCTCGAAAGAAAAACAAGGCCAAAGATGACTCTCCCCATCTTCCTGAGGATAGTGGCACTTGGTTTCCTTGAGCCAGTGCTAGATCAAAACTTGTACAACATGGGAATGAAGATGACATCAACAACGTTTGCATCTGCCACTGTTAATGTCCTTCCAGCTATTACTTTTATAATGGCTCTCACTTTCAGGTTAGAGTCAGTGAACTGGAGAAAATTTCACAGCGTAGCCAAAGTAATTGGAACGGTTGTAACCGTTTCAGGAGCTATGGTTATGACTTTGTACAAAGGCCCTGCCTATCAAATCATAAAGGGGGGAGGTGCCATCAACCACCACGCCTCCGCCGCAACCGAGCAACCATCTGACCAAAATTGGGTGATGGGCACAGTAATGCTTATATCAAGTTGTTGTAGTTGGGCTGGATTCTTTATTTTGCAATCATTCACTTTGAAGAAGTATCCAGCAGAGCTATCACTAACAGCATGGATTTGCTTGATGGGTATAATTGAGGGTTCAATTGCATCACTTATATTTGAAAGAGACATGAGTGTGTGGGTCATAGGTTGGGACTCAAGGCTTCTTGCTTGTGTTTATTCTGGTGTGATATGCTCTGGAATGGCATATTATGTACAAGGAGTTGTAACTAGAGAACGTGGACCAGTTTTTGTCACATCTTTCAGTCCACTATGTATGATTATCACTGCTGCATTGGGTTCTCTTGTCTTAGCTGAACAAGTTCATCTTGGAAGTATATTTGGAGCTATTATCATCGTTATTGGTCTTTACACTGTGGTATGGGGTAAAAGCAAAGATCGTCGTGAAGACACATCAGAGATAGGAAAAGGTGAAGGCCAGGATCAATTGCCAATCAAGAATGGTACAAAATCAGGATCAGACATTTTTGATGGCATTGAGATTAATGTTCCAGCTGAAAAATTGAAAAAAGGAGAAGCAAAAAATGTTCCAACACAAGCATGA
Protein sequence

>Msa0417280

MEDQNANGKLNNGALLRKIKPYLAILSLQFGYSGMYIITMVSFKHGMSHWILSVYRHVVAAIIITPFALVLERKTRPKMTLPIFLRIVALGFLEPVLDQNLYNMGMKMTSTTFASATVNVLPAITFIMALTFRLESVNWRKFHSVAKVIGTVVTVSGAMVMTLYKGPAYQIIKGGGAINHHASAATEQPSDQNWVMGTVMLISSCCSWAGFFILQSFTLKKYPAELSLTAWICLMGIIEGSIASLIFERDMSVWVIGWDSRLLACVYSGVICSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSLVLAEQVHLGSIFGAIIIVIGLYTVVWGKSKDRREDTSEIGKGEGQDQLPIKNGTKSGSDIFDGIEINVPAEKLKKGEAKNVPTQA*