Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417660 | XP_003601125.1 | 100.000 | 125 | 0 | 0 | 1 | 125 | 1 | 125 | 7.81e-83 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417660 | sp|Q54T60|TMM50_DICDI | 30.081 | 123 | 71 | 3 | 12 | 119 | 10 | 132 | 2.87e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417660 | B7FGM3 | 100.000 | 125 | 0 | 0 | 1 | 125 | 1 | 125 | 3.73e-83 | 249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092450 | Msa0417660 | 0.829800 | 4.204091e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417660 | MtrunA17_Chr3g0115201 | 100.000 | 125 | 0 | 0 | 1 | 125 | 1 | 125 | 7.18e-87 | 249 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417660 | AT1G36980.1 | 83.200 | 125 | 21 | 0 | 1 | 125 | 1 | 125 | 4.46e-74 | 217 |
| Msa0417660 | AT1G36980.2 | 83.200 | 125 | 21 | 0 | 1 | 125 | 1 | 125 | 4.46e-74 | 217 |
Find 41 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGACTTAATCGAATTA+TGG | 0.237793 | 3_2:+64938878 | Msa0417660:exon |
| GTGTCCTTTGTTTCTTTAGC+TGG | 0.292476 | 3_2:+64942294 | Msa0417660:CDS |
| CCATTTCTTCACTACCTTCC+TGG | 0.294772 | 3_2:+64938991 | Msa0417660:CDS |
| TCGGTGCCGGCTGGTGGATC+TGG | 0.314660 | 3_2:+64938935 | Msa0417660:CDS |
| GTGTAACGGAGAACCGAAAA+TGG | 0.315182 | 3_2:+64938861 | Msa0417660:exon |
| TGAGTACAACGTTTCCTCTT+TGG | 0.345709 | 3_2:-64943444 | None:intergenic |
| AAGATTTGTCAAGTGAATCT+TGG | 0.381108 | 3_2:-64942335 | None:intergenic |
| AATGGACTTAATCGAATTAT+GGG | 0.397303 | 3_2:+64938879 | Msa0417660:exon |
| CCAGGAAGGTAGTGAAGAAA+TGG | 0.405204 | 3_2:-64938991 | None:intergenic |
| GATTATTCTCCTTATGATGA+AGG | 0.411873 | 3_2:+64939163 | Msa0417660:CDS |
| TCAGTGTGGACTGGAATTGC+AGG | 0.434993 | 3_2:+64942363 | Msa0417660:CDS |
| CTCCACTCCCCTTCATCATA+AGG | 0.448612 | 3_2:-64939172 | None:intergenic |
| AATGTGTATTTGTCTTGATC+AGG | 0.469326 | 3_2:+64942394 | Msa0417660:CDS |
| GTTTCTTTAGCTGGATCAGC+GGG | 0.479953 | 3_2:+64942303 | Msa0417660:CDS |
| CAATTCCAGTCCACACTGAT+GGG | 0.488024 | 3_2:-64942359 | None:intergenic |
| AAAACTGCTCCGGCGACGCC+AGG | 0.490397 | 3_2:-64938913 | None:intergenic |
| CGTAAACCCAACAACAGAAA+AGG | 0.490546 | 3_2:-64938839 | None:intergenic |
| ATTATTCTCCTTATGATGAA+GGG | 0.506748 | 3_2:+64939164 | Msa0417660:CDS |
| TCTCAAAGTAACACCAACAC+TGG | 0.515230 | 3_2:+64938802 | None:intergenic |
| GCAATTCCAGTCCACACTGA+TGG | 0.522479 | 3_2:-64942360 | None:intergenic |
| GTGAAGAAATGGAACGGTGG+TGG | 0.524494 | 3_2:-64938980 | None:intergenic |
| GTTGTTGGGTTTACGTGTAA+CGG | 0.540400 | 3_2:+64938847 | Msa0417660:five_prime_UTR |
| CTCCTTATGATGAAGGGGAG+TGG | 0.556644 | 3_2:+64939170 | Msa0417660:CDS |
| TCTTCCCCATCAGTGTGGAC+TGG | 0.560606 | 3_2:+64942354 | Msa0417660:CDS |
| GCCGGCACCGAAAACTGCTC+CGG | 0.565156 | 3_2:-64938923 | None:intergenic |
| CTCAAAGTAACACCAACACT+GGG | 0.588307 | 3_2:+64938803 | None:intergenic |
| TTATTCTCCTTATGATGAAG+GGG | 0.589905 | 3_2:+64939165 | Msa0417660:CDS |
| GTCAAGCCAGATCCACCAGC+CGG | 0.610609 | 3_2:-64938941 | None:intergenic |
| TGTTTCTTTAGCTGGATCAG+CGG | 0.614958 | 3_2:+64942302 | Msa0417660:CDS |
| CTTATGATGAAGGGGAGTGG+AGG | 0.618994 | 3_2:+64939173 | Msa0417660:CDS |
| ACGTTGTACTCACTCGAAGT+TGG | 0.621038 | 3_2:+64943455 | Msa0417660:CDS |
| TTGAACTCAGCAAACCAAAG+AGG | 0.627225 | 3_2:+64943430 | Msa0417660:intron |
| AGATGTGAAACTGACCAGGA+AGG | 0.635158 | 3_2:-64939005 | None:intergenic |
| AATCTCGCGTATCCCAGTGT+TGG | 0.636730 | 3_2:-64938815 | None:intergenic |
| TGATCCAGCTAAAGAAACAA+AGG | 0.642275 | 3_2:-64942298 | None:intergenic |
| TTGTTAACAGACTGAAGCTG+TGG | 0.644695 | 3_2:+64942253 | Msa0417660:intron |
| ACAAATCTTCCCCATCAGTG+TGG | 0.656630 | 3_2:+64942349 | Msa0417660:CDS |
| AATTCCAGTCCACACTGATG+GGG | 0.663062 | 3_2:-64942358 | None:intergenic |
| AAGGTAGTGAAGAAATGGAA+CGG | 0.682128 | 3_2:-64938986 | None:intergenic |
| GTAGTGAAGAAATGGAACGG+TGG | 0.714297 | 3_2:-64938983 | None:intergenic |
| GGTGGTGGAGCTACATACGA+CGG | 0.768981 | 3_2:-64938965 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAGAATTTAAAATTCT+AGG | + | chr3_2:64940299-64940318 | Msa0417660:intron | 10.0% |
| !! | ATTCAAAACATATAAATAAA+AGG | - | chr3_2:64941723-64941742 | None:intergenic | 10.0% |
| !!! | TTTATTTATATGTTTTGAAT+TGG | + | chr3_2:64941723-64941742 | Msa0417660:intron | 10.0% |
| !!! | TTATTTATATGTTTTGAATT+GGG | + | chr3_2:64941724-64941743 | Msa0417660:intron | 10.0% |
| !! | TAAATATTTACTAATATGAT+TGG | - | chr3_2:64942543-64942562 | None:intergenic | 10.0% |
| !!! | TATTTTAGTTTTAGACTTTT+AGG | + | chr3_2:64939043-64939062 | Msa0417660:intron | 15.0% |
| !!! | AACTTAATTTTATCTTTTTC+TGG | - | chr3_2:64939353-64939372 | None:intergenic | 15.0% |
| !!! | ATTTAGTTGTTTTTAGATAA+AGG | + | chr3_2:64940865-64940884 | Msa0417660:intron | 15.0% |
| !! | TCAATAAGCAAAAAAAAAAA+AGG | + | chr3_2:64941190-64941209 | Msa0417660:intron | 15.0% |
| !!! | TATTTATATGTTTTGAATTG+GGG | + | chr3_2:64941725-64941744 | Msa0417660:intron | 15.0% |
| !!! | ATTTTTAATAGTTTTCAACA+CGG | - | chr3_2:64942504-64942523 | None:intergenic | 15.0% |
| !!! | ATTTCAAATAATGTTTCTTT+TGG | + | chr3_2:64942634-64942653 | Msa0417660:intron | 15.0% |
| !! | AGGAATTTAAATACAAATAA+TGG | - | chr3_2:64942961-64942980 | None:intergenic | 15.0% |
| !!! | TCATTTGATTTGTTAATTGT+TGG | + | chr3_2:64939215-64939234 | Msa0417660:intron | 20.0% |
| !!! | AACTCTTACAATTTTATGAT+CGG | + | chr3_2:64941062-64941081 | Msa0417660:intron | 20.0% |
| !! | ATAAGCAAAAAAAAAAAAGG+TGG | + | chr3_2:64941193-64941212 | Msa0417660:intron | 20.0% |
| !! | TAAGCAAAAAAAAAAAAGGT+GGG | + | chr3_2:64941194-64941213 | Msa0417660:intron | 20.0% |
| !! | ATTTCTTTAAATTTGTGAGT+GGG | - | chr3_2:64941624-64941643 | None:intergenic | 20.0% |
| !! | AATTTCTTTAAATTTGTGAG+TGG | - | chr3_2:64941625-64941644 | None:intergenic | 20.0% |
| !!! | ATTTATATGTTTTGAATTGG+GGG | + | chr3_2:64941726-64941745 | Msa0417660:intron | 20.0% |
| !! | TAAACTTTCAATTTGACATT+AGG | - | chr3_2:64942766-64942785 | None:intergenic | 20.0% |
| !! | TGTCAAATTGAAAGTTTAAA+AGG | + | chr3_2:64942768-64942787 | Msa0417660:intron | 20.0% |
| !!! | CTATGAAAAACTTCTAATTT+TGG | - | chr3_2:64942879-64942898 | None:intergenic | 20.0% |
| !!! | TGACTTTAAAAAATTGACTA+AGG | + | chr3_2:64942914-64942933 | Msa0417660:intron | 20.0% |
| !!! | TATTTTTCAAGTTTTTGACT+TGG | - | chr3_2:64943018-64943037 | None:intergenic | 20.0% |
| !! | AATTTGAAGATTGACATAAA+AGG | - | chr3_2:64943050-64943069 | None:intergenic | 20.0% |
| !!! | TTTTATGTCAATCTTCAAAT+TGG | + | chr3_2:64943049-64943068 | Msa0417660:intron | 20.0% |
| !! | AAAATAATCATCAAACAAGT+AGG | - | chr3_2:64943097-64943116 | None:intergenic | 20.0% |
| !! | TTTATCACCACATTAAATAA+AGG | - | chr3_2:64943247-64943266 | None:intergenic | 20.0% |
| !! | AATTCGATTAAGTCCATTTT+CGG | - | chr3_2:64938877-64938896 | None:intergenic | 25.0% |
| !! | AAATGGACTTAATCGAATTA+TGG | + | chr3_2:64938878-64938897 | Msa0417660:exon | 25.0% |
| !! | AATGGACTTAATCGAATTAT+GGG | + | chr3_2:64938879-64938898 | Msa0417660:exon | 25.0% |
| ! | ATTATTCTCCTTATGATGAA+GGG | + | chr3_2:64939164-64939183 | Msa0417660:CDS | 25.0% |
| ! | AATCAAATGAGCAATAAAGT+AGG | - | chr3_2:64939205-64939224 | None:intergenic | 25.0% |
| !! | ATGTTGTTTGACTTCAAAAT+CGG | + | chr3_2:64939258-64939277 | Msa0417660:intron | 25.0% |
| ! | TTGTCGTAACTCATAAATAT+AGG | - | chr3_2:64939293-64939312 | None:intergenic | 25.0% |
| ! | ATGAAAACAATTTCTGACAT+TGG | - | chr3_2:64939466-64939485 | None:intergenic | 25.0% |
| !!! | GCTTATTTTAGTTTATCTAC+TGG | - | chr3_2:64939524-64939543 | None:intergenic | 25.0% |
| ! | TTCAAAATAGTCACTTCTTA+GGG | - | chr3_2:64939560-64939579 | None:intergenic | 25.0% |
| ! | ATTCAAAATAGTCACTTCTT+AGG | - | chr3_2:64939561-64939580 | None:intergenic | 25.0% |
| ! | AAGACTGTTACATAAACAAA+AGG | - | chr3_2:64940515-64940534 | None:intergenic | 25.0% |
| !!! | TTTATTTTGGTCAAACAATG+TGG | + | chr3_2:64940805-64940824 | Msa0417660:intron | 25.0% |
| !!! | TTGTTATTGTGGTTTTTTGA+TGG | + | chr3_2:64940943-64940962 | Msa0417660:intron | 25.0% |
| ! | AAGTCTGACAAATTTACAAT+TGG | + | chr3_2:64941840-64941859 | Msa0417660:intron | 25.0% |
| ! | ACAAATTTACAATTGGTGTA+TGG | + | chr3_2:64941847-64941866 | Msa0417660:intron | 25.0% |
| ! | TTGACTATCTCAATTTAAGA+GGG | + | chr3_2:64941928-64941947 | Msa0417660:intron | 25.0% |
| ! | AAAATAGATTGGAAAATTGC+TGG | - | chr3_2:64942044-64942063 | None:intergenic | 25.0% |
| ! | AACTGGTCAAAAAAATAGAT+TGG | - | chr3_2:64942055-64942074 | None:intergenic | 25.0% |
| !!! | CTATTTTTTTGACCAGTTAT+TGG | + | chr3_2:64942057-64942076 | Msa0417660:intron | 25.0% |
| ! | CCTAGAAAATAAACATACAA+GGG | - | chr3_2:64942088-64942107 | None:intergenic | 25.0% |
| ! | ACCTAGAAAATAAACATACA+AGG | - | chr3_2:64942089-64942108 | None:intergenic | 25.0% |
| ! | TTCCTTCAATGATAAATTCA+AGG | - | chr3_2:64942481-64942500 | None:intergenic | 25.0% |
| ! | ATTCCATCATTTAAGTCAAA+AGG | + | chr3_2:64942813-64942832 | Msa0417660:intron | 25.0% |
| ! | TTCCATCATTTAAGTCAAAA+GGG | + | chr3_2:64942814-64942833 | Msa0417660:intron | 25.0% |
| ! | ACCACATTAAATAAAGGAAA+TGG | - | chr3_2:64943241-64943260 | None:intergenic | 25.0% |
| ! | AGATTACCTTTTCTGTTGTT+GGG | + | chr3_2:64938833-64938852 | Msa0417660:five_prime_UTR | 30.0% |
| !!! | CTTTTGATTGTTGTTTTCGA+AGG | + | chr3_2:64939085-64939104 | Msa0417660:intron | 30.0% |
| GATTATTCTCCTTATGATGA+AGG | + | chr3_2:64939163-64939182 | Msa0417660:CDS | 30.0% | |
| TTATTCTCCTTATGATGAAG+GGG | + | chr3_2:64939165-64939184 | Msa0417660:CDS | 30.0% | |
| AAATGAGCAATAAAGTAGGT+AGG | - | chr3_2:64939201-64939220 | None:intergenic | 30.0% | |
| CAACATCACAATAATCAACA+AGG | - | chr3_2:64939244-64939263 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCATAAGCTGTAT+TGG | + | chr3_2:64939397-64939416 | Msa0417660:intron | 30.0% |
| TTCTTAGGGAATGTTTGAAT+TGG | - | chr3_2:64939546-64939565 | None:intergenic | 30.0% | |
| GTGACTGTTTGACTAATTTA+CGG | - | chr3_2:64939690-64939709 | None:intergenic | 30.0% | |
| ATCAATGCTTACAAGTTTAC+TGG | + | chr3_2:64939743-64939762 | Msa0417660:intron | 30.0% | |
| GAATTTATTGGCAAATTCTC+TGG | - | chr3_2:64939779-64939798 | None:intergenic | 30.0% | |
| GAGATGTCAATGGAATTTAT+TGG | - | chr3_2:64939791-64939810 | None:intergenic | 30.0% | |
| ATTGATGCTAGTAAGTCTAT+AGG | + | chr3_2:64939818-64939837 | Msa0417660:intron | 30.0% | |
| !! | TAGGCATCATTTTTCTAACT+AGG | + | chr3_2:64939837-64939856 | Msa0417660:intron | 30.0% |
| ATACTGACATGTCAAAGATT+TGG | + | chr3_2:64939868-64939887 | Msa0417660:intron | 30.0% | |
| AAAATAATTCACTGAGGTAG+TGG | - | chr3_2:64940135-64940154 | None:intergenic | 30.0% | |
| AAGCACAAAATAATTCACTG+AGG | - | chr3_2:64940141-64940160 | None:intergenic | 30.0% | |
| TAGAGTAATTCTCTTAGAAG+CGG | + | chr3_2:64940217-64940236 | Msa0417660:intron | 30.0% | |
| GAGGAAATGTAATGTTATGA+GGG | - | chr3_2:64940350-64940369 | None:intergenic | 30.0% | |
| TGAGGAAATGTAATGTTATG+AGG | - | chr3_2:64940351-64940370 | None:intergenic | 30.0% | |
| AACATTTGATTCATCTCTTG+TGG | - | chr3_2:64940750-64940769 | None:intergenic | 30.0% | |
| ACAAGAGATGAATCAAATGT+TGG | + | chr3_2:64940749-64940768 | Msa0417660:intron | 30.0% | |
| TTGTTTGACCAAAATAAACC+AGG | - | chr3_2:64940803-64940822 | None:intergenic | 30.0% | |
| ATAAAGGAAGTCTTTCTTTG+AGG | + | chr3_2:64940881-64940900 | Msa0417660:intron | 30.0% | |
| ! | CGAGTCTTAAATTGTTATTG+TGG | + | chr3_2:64940932-64940951 | Msa0417660:intron | 30.0% |
| ! | AATTTTATGATCGGAGTCTA+TGG | + | chr3_2:64941071-64941090 | Msa0417660:intron | 30.0% |
| !! | GACCAAGAAGTATTTATTTG+AGG | + | chr3_2:64941335-64941354 | Msa0417660:intron | 30.0% |
| CTCCTCAAATAAATACTTCT+TGG | - | chr3_2:64941340-64941359 | None:intergenic | 30.0% | |
| AGTATTTATTTGAGGAGTTG+AGG | + | chr3_2:64941343-64941362 | Msa0417660:intron | 30.0% | |
| ! | ACTCATTTTACGCAATTTGA+GGG | - | chr3_2:64941395-64941414 | None:intergenic | 30.0% |
| ACTTGCATGAACAAATTACT+AGG | - | chr3_2:64941570-64941589 | None:intergenic | 30.0% | |
| CATGCAAATGATTTAACGAA+AGG | - | chr3_2:64941676-64941695 | None:intergenic | 30.0% | |
| CTTTCGTTAAATCATTTGCA+TGG | + | chr3_2:64941674-64941693 | Msa0417660:intron | 30.0% | |
| !! | GTCAAGTTGATAGATATATG+TGG | - | chr3_2:64941913-64941932 | None:intergenic | 30.0% |
| CTTGACTATCTCAATTTAAG+AGG | + | chr3_2:64941927-64941946 | Msa0417660:intron | 30.0% | |
| AAACCAGCAAATTCATAACA+TGG | - | chr3_2:64942014-64942033 | None:intergenic | 30.0% | |
| !! | TTTTTGACCAGTTATTGGTT+TGG | + | chr3_2:64942062-64942081 | Msa0417660:intron | 30.0% |
| !! | CCCTTGTATGTTTATTTTCT+AGG | + | chr3_2:64942085-64942104 | Msa0417660:intron | 30.0% |
| !! | TTAAGAAGCTTTGAACTAAG+GGG | - | chr3_2:64942176-64942195 | None:intergenic | 30.0% |
| !! | CTTAAGAAGCTTTGAACTAA+GGG | - | chr3_2:64942177-64942196 | None:intergenic | 30.0% |
| !! | TCTTAAGAAGCTTTGAACTA+AGG | - | chr3_2:64942178-64942197 | None:intergenic | 30.0% |
| AAAGCTTCTTAAGAATCACA+TGG | + | chr3_2:64942184-64942203 | Msa0417660:intron | 30.0% | |
| AGTCTGTTAACAAGAGTAAA+AGG | - | chr3_2:64942246-64942265 | None:intergenic | 30.0% | |
| AAGATTTGTCAAGTGAATCT+TGG | - | chr3_2:64942338-64942357 | None:intergenic | 30.0% | |
| AATGTGTATTTGTCTTGATC+AGG | + | chr3_2:64942394-64942413 | Msa0417660:CDS | 30.0% | |
| TAACAACTCAAGAGGAAAAT+CGG | - | chr3_2:64942448-64942467 | None:intergenic | 30.0% | |
| !! | ATTTTCCTCTTGAGTTGTTA+TGG | + | chr3_2:64942448-64942467 | Msa0417660:intron | 30.0% |
| ! | TTTTTCCATAACAACTCAAG+AGG | - | chr3_2:64942456-64942475 | None:intergenic | 30.0% |
| TGCCTTGAATTTATCATTGA+AGG | + | chr3_2:64942476-64942495 | Msa0417660:intron | 30.0% | |
| TGGATCACTTGAAATCATTA+TGG | + | chr3_2:64942654-64942673 | Msa0417660:intron | 30.0% | |
| CAATTTGACATTAGGACATT+AGG | - | chr3_2:64942758-64942777 | None:intergenic | 30.0% | |
| ! | GCCATTTCCTTTATTTAATG+TGG | + | chr3_2:64943237-64943256 | Msa0417660:intron | 30.0% |
| TTAATGTGGTGATAAATAGC+TGG | + | chr3_2:64943251-64943270 | Msa0417660:intron | 30.0% | |
| ! | GAGATTACCTTTTCTGTTGT+TGG | + | chr3_2:64938832-64938851 | Msa0417660:five_prime_UTR | 35.0% |
| ! | ATCGAATTATGGGCGATTTT+CGG | + | chr3_2:64938889-64938908 | Msa0417660:CDS | 35.0% |
| AAGGTAGTGAAGAAATGGAA+CGG | - | chr3_2:64938989-64939008 | None:intergenic | 35.0% | |
| !! | GTTTTGTTGTGAGACTGTTT+GGG | - | chr3_2:64939496-64939515 | None:intergenic | 35.0% |
| !!! | AGTTTTGTTGTGAGACTGTT+TGG | - | chr3_2:64939497-64939516 | None:intergenic | 35.0% |
| TTGAATGAGAATTCTCATGC+AGG | - | chr3_2:64939636-64939655 | None:intergenic | 35.0% | |
| AATTTGAGGAGAGATGTCAA+TGG | - | chr3_2:64939801-64939820 | None:intergenic | 35.0% | |
| GACTTACTAGCATCAATTTG+AGG | - | chr3_2:64939815-64939834 | None:intergenic | 35.0% | |
| GAGATAGAGTGATAATTCCT+TGG | + | chr3_2:64939934-64939953 | Msa0417660:intron | 35.0% | |
| TCTGTGATAATTTGGTTGTG+TGG | - | chr3_2:64940086-64940105 | None:intergenic | 35.0% | |
| ! | CTTTTACATGATGTAAGCAG+TGG | + | chr3_2:64940158-64940177 | Msa0417660:intron | 35.0% |
| GGAATTGAACAAAGCGTATA+AGG | + | chr3_2:64940179-64940198 | Msa0417660:intron | 35.0% | |
| TGTGTTTGGATGAGGTAATT+TGG | + | chr3_2:64940272-64940291 | Msa0417660:intron | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | - | chr3_2:64940332-64940351 | None:intergenic | 35.0% | |
| GGGAATGTAATGTAATGTTG+AGG | - | chr3_2:64940369-64940388 | None:intergenic | 35.0% | |
| GAATTCCATTGTTTGGATGA+GGG | - | chr3_2:64940389-64940408 | None:intergenic | 35.0% | |
| TGAATTCCATTGTTTGGATG+AGG | - | chr3_2:64940390-64940409 | None:intergenic | 35.0% | |
| TTGAGGTGAATTCCATTGTT+TGG | - | chr3_2:64940396-64940415 | None:intergenic | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | - | chr3_2:64940332-64940351 | None:intergenic | 35.0% | |
| GAGGGAATGTAATGTTATGA+GGG | - | chr3_2:64940431-64940450 | None:intergenic | 35.0% | |
| TGAGGGAATGTAATGTTATG+AGG | - | chr3_2:64940432-64940451 | None:intergenic | 35.0% | |
| !! | GTTATGAGGGAATGTTTTGA+GGG | - | chr3_2:64940449-64940468 | None:intergenic | 35.0% |
| ! | TGTTATGAGGGAATGTTTTG+AGG | - | chr3_2:64940450-64940469 | None:intergenic | 35.0% |
| GAGGGAATGTAATGTTATGA+GGG | - | chr3_2:64940431-64940450 | None:intergenic | 35.0% | |
| TGAGGGAATGTAATGTTATG+AGG | - | chr3_2:64940432-64940451 | None:intergenic | 35.0% | |
| ! | ATTGATGGAGCACTCAAAAT+AGG | - | chr3_2:64940547-64940566 | None:intergenic | 35.0% |
| !! | ATTTTGAGTGCTCCATCAAT+TGG | + | chr3_2:64940547-64940566 | Msa0417660:intron | 35.0% |
| !! | ACATTTTGACAGCATCAGAT+TGG | - | chr3_2:64940594-64940613 | None:intergenic | 35.0% |
| GTACGACTTATCATCAATAG+TGG | - | chr3_2:64940626-64940645 | None:intergenic | 35.0% | |
| ! | ATGTTTGGCCTGGTTTATTT+TGG | + | chr3_2:64940792-64940811 | Msa0417660:intron | 35.0% |
| ! | AGGGAGTTTTCATAAACTCA+TGG | - | chr3_2:64941102-64941121 | None:intergenic | 35.0% |
| AACTCCCTAGTTTGACAATT+TGG | + | chr3_2:64941114-64941133 | Msa0417660:intron | 35.0% | |
| ACTCCCTAGTTTGACAATTT+GGG | + | chr3_2:64941115-64941134 | Msa0417660:intron | 35.0% | |
| GACAATTTGGGCCTAATTAT+TGG | + | chr3_2:64941127-64941146 | Msa0417660:intron | 35.0% | |
| !! | AAAAAAAAAAAGGTGGGCTG+TGG | + | chr3_2:64941200-64941219 | Msa0417660:intron | 35.0% |
| !! | AAAAAAAAAAGGTGGGCTGT+GGG | + | chr3_2:64941201-64941220 | Msa0417660:intron | 35.0% |
| AATTGGTTACATTGCTGAGT+TGG | + | chr3_2:64941232-64941251 | Msa0417660:intron | 35.0% | |
| ATTGGTTACATTGCTGAGTT+GGG | + | chr3_2:64941233-64941252 | Msa0417660:intron | 35.0% | |
| ! | CACTCATTTTACGCAATTTG+AGG | - | chr3_2:64941396-64941415 | None:intergenic | 35.0% |
| CTCAAATTGCGTAAAATGAG+TGG | + | chr3_2:64941394-64941413 | Msa0417660:intron | 35.0% | |
| TGTCTCCAATTGATGTAGAA+CGG | - | chr3_2:64941433-64941452 | None:intergenic | 35.0% | |
| AATACTCAAGCAACAGAAAC+TGG | - | chr3_2:64941802-64941821 | None:intergenic | 35.0% | |
| !! | TTTGTCAGACTTAGCTCTAA+TGG | - | chr3_2:64941832-64941851 | None:intergenic | 35.0% |
| ! | TTTTGGTAGATTCGTGAGTT+TGG | + | chr3_2:64941882-64941901 | Msa0417660:intron | 35.0% |
| ! | TACAGCAGGACATTTAAAGT+CGG | - | chr3_2:64941991-64942010 | None:intergenic | 35.0% |
| AATTCATAACATGGTACAGC+AGG | - | chr3_2:64942005-64942024 | None:intergenic | 35.0% | |
| GTACCATGTTATGAATTTGC+TGG | + | chr3_2:64942008-64942027 | Msa0417660:intron | 35.0% | |
| TCAACTAGACAGAATAATCC+CGG | + | chr3_2:64942140-64942159 | Msa0417660:intron | 35.0% | |
| ACTAAGGGGAATAAAAATCC+CGG | - | chr3_2:64942162-64942181 | None:intergenic | 35.0% | |
| TGATCCAGCTAAAGAAACAA+AGG | - | chr3_2:64942301-64942320 | None:intergenic | 35.0% | |
| GTATTTGTCTTGATCAGGTA+AGG | + | chr3_2:64942399-64942418 | Msa0417660:intron | 35.0% | |
| GCTAGCATTTCAAATTTCAC+TGG | + | chr3_2:64942592-64942611 | Msa0417660:intron | 35.0% | |
| ! | ACATTAGGTGAAGGTGTATT+TGG | - | chr3_2:64942743-64942762 | None:intergenic | 35.0% |
| !!! | GACCCTTTTGACTTAAATGA+TGG | - | chr3_2:64942819-64942838 | None:intergenic | 35.0% |
| !! | TTTCTTAACTTGTGCCCTAA+GGG | - | chr3_2:64942855-64942874 | None:intergenic | 35.0% |
| !! | ATTTCTTAACTTGTGCCCTA+AGG | - | chr3_2:64942856-64942875 | None:intergenic | 35.0% |
| ATTCCTTAATATGTGCCCTT+AGG | + | chr3_2:64942975-64942994 | Msa0417660:intron | 35.0% | |
| TTCCTTAATATGTGCCCTTA+GGG | + | chr3_2:64942976-64942995 | Msa0417660:intron | 35.0% | |
| CATGCAACGAAAATTTGGTT+TGG | - | chr3_2:64943124-64943143 | None:intergenic | 35.0% | |
| ATAGCTTGGTCCATCTTATT+CGG | - | chr3_2:64943176-64943195 | None:intergenic | 35.0% | |
| AGATGGACCAAGCTATAATT+TGG | + | chr3_2:64943180-64943199 | Msa0417660:intron | 35.0% | |
| TGAAGCTCCAAATTATAGCT+TGG | - | chr3_2:64943190-64943209 | None:intergenic | 35.0% | |
| CGTAAACCCAACAACAGAAA+AGG | - | chr3_2:64938842-64938861 | None:intergenic | 40.0% | |
| GTTGTTGGGTTTACGTGTAA+CGG | + | chr3_2:64938847-64938866 | Msa0417660:five_prime_UTR | 40.0% | |
| ! | GGAATTTTTGCTTCTCTTGC+TGG | + | chr3_2:64939106-64939125 | Msa0417660:intron | 40.0% |
| CAGTCACATACAAACTTTGC+TGG | + | chr3_2:64939703-64939722 | Msa0417660:intron | 40.0% | |
| ! | CAATTGGCCTGCACTATTTA+CGG | + | chr3_2:64939981-64940000 | Msa0417660:intron | 40.0% |
| AGGTTTACCGTAAATAGTGC+AGG | - | chr3_2:64939991-64940010 | None:intergenic | 40.0% | |
| GCGTCATACAAATTGCAACA+AGG | - | chr3_2:64940011-64940030 | None:intergenic | 40.0% | |
| TTGTATGACGCTTCTGTTCT+TGG | + | chr3_2:64940020-64940039 | Msa0417660:intron | 40.0% | |
| CTGCATGCTCTGTGATAATT+TGG | - | chr3_2:64940094-64940113 | None:intergenic | 40.0% | |
| TGAACAAAGCGTATAAGGAG+AGG | + | chr3_2:64940184-64940203 | Msa0417660:intron | 40.0% | |
| AGTAATTCTCTTAGAAGCGG+AGG | + | chr3_2:64940220-64940239 | Msa0417660:intron | 40.0% | |
| GTAAGAGCTTAGAGTGTGTT+TGG | + | chr3_2:64940258-64940277 | Msa0417660:intron | 40.0% | |
| ACATTCCCTCATCCAAACAA+TGG | + | chr3_2:64940381-64940400 | Msa0417660:intron | 40.0% | |
| CAAAAGGAAAGCCTAGTTTG+AGG | - | chr3_2:64940499-64940518 | None:intergenic | 40.0% | |
| CATCAGATTGGACCCATATT+TGG | - | chr3_2:64940582-64940601 | None:intergenic | 40.0% | |
| ! | GCTTTGTTAGAAAACAGCCT+CGG | + | chr3_2:64940724-64940743 | Msa0417660:intron | 40.0% |
| GTTGGAGAAACAAACCATGA+AGG | + | chr3_2:64940767-64940786 | Msa0417660:intron | 40.0% | |
| CAAACCATGAAGGCTATGTT+TGG | + | chr3_2:64940777-64940796 | Msa0417660:intron | 40.0% | |
| GGTCAAACAATGTGGTTATG+AGG | + | chr3_2:64940813-64940832 | Msa0417660:intron | 40.0% | |
| AGGCCCAAATTGTCAAACTA+GGG | - | chr3_2:64941121-64941140 | None:intergenic | 40.0% | |
| TAGGCCCAAATTGTCAAACT+AGG | - | chr3_2:64941122-64941141 | None:intergenic | 40.0% | |
| ACACACCGTTCTACATCAAT+TGG | + | chr3_2:64941425-64941444 | Msa0417660:intron | 40.0% | |
| ACATCAAACCCTCACCATTT+CGG | + | chr3_2:64941452-64941471 | Msa0417660:intron | 40.0% | |
| TCATGAGTAATGAGCCGAAA+TGG | - | chr3_2:64941469-64941488 | None:intergenic | 40.0% | |
| TTACTCATGACCTAGCAAGA+TGG | + | chr3_2:64941479-64941498 | Msa0417660:intron | 40.0% | |
| TGATGTGTAACCATCTTGCT+AGG | - | chr3_2:64941492-64941511 | None:intergenic | 40.0% | |
| GCAAGATGGTTACACATCAA+AGG | + | chr3_2:64941493-64941512 | Msa0417660:intron | 40.0% | |
| ! | CAAAGGTGCAAATTTCTTGC+TGG | + | chr3_2:64941510-64941529 | Msa0417660:intron | 40.0% |
| GGGTTCAAAAATCACAACCT+AGG | - | chr3_2:64941604-64941623 | None:intergenic | 40.0% | |
| !! | TCAGACTTAGCTCTAATGGT+GGG | - | chr3_2:64941828-64941847 | None:intergenic | 40.0% |
| !! | TATGGATGCACCACTAGTTT+TGG | + | chr3_2:64941865-64941884 | Msa0417660:intron | 40.0% |
| CACGAATCTACCAAAACTAG+TGG | - | chr3_2:64941878-64941897 | None:intergenic | 40.0% | |
| !! | TGTCTAGTTGAGTTGAAGCA+AGG | - | chr3_2:64942131-64942150 | None:intergenic | 40.0% |
| CAACTAGACAGAATAATCCC+GGG | + | chr3_2:64942141-64942160 | Msa0417660:intron | 40.0% | |
| CTAAGGGGAATAAAAATCCC+GGG | - | chr3_2:64942161-64942180 | None:intergenic | 40.0% | |
| TTGTTAACAGACTGAAGCTG+TGG | + | chr3_2:64942253-64942272 | Msa0417660:intron | 40.0% | |
| ! | GTGTCCTTTGTTTCTTTAGC+TGG | + | chr3_2:64942294-64942313 | Msa0417660:CDS | 40.0% |
| TGTTTCTTTAGCTGGATCAG+CGG | + | chr3_2:64942302-64942321 | Msa0417660:CDS | 40.0% | |
| ! | GAGGAAAATCGGTTCTCATT+AGG | - | chr3_2:64942437-64942456 | None:intergenic | 40.0% |
| GACATTAGGACATTAGGTGA+AGG | - | chr3_2:64942752-64942771 | None:intergenic | 40.0% | |
| ! | TCTTGTTATCTTGTGCCCTT+AGG | + | chr3_2:64942837-64942856 | Msa0417660:intron | 40.0% |
| ! | CTTGTTATCTTGTGCCCTTA+GGG | + | chr3_2:64942838-64942857 | Msa0417660:intron | 40.0% |
| CACTGCATGCAACGAAAATT+TGG | - | chr3_2:64943129-64943148 | None:intergenic | 40.0% | |
| ! | CAAATTTTCGTTGCATGCAG+TGG | + | chr3_2:64943127-64943146 | Msa0417660:intron | 40.0% |
| !! | CATGCAGTGGACTGATTTAT+TGG | + | chr3_2:64943140-64943159 | Msa0417660:intron | 40.0% |
| ACTTCACATCCCGAATAAGA+TGG | + | chr3_2:64943163-64943182 | Msa0417660:intron | 40.0% | |
| TAGCTTGGTCCATCTTATTC+GGG | - | chr3_2:64943175-64943194 | None:intergenic | 40.0% | |
| ACATGCAATATGAACCTACC+CGG | - | chr3_2:64943324-64943343 | None:intergenic | 40.0% | |
| CCACGAGAGTGAAATTACAT+TGG | - | chr3_2:64943374-64943393 | None:intergenic | 40.0% | |
| CCAATGTAATTTCACTCTCG+TGG | + | chr3_2:64943371-64943390 | Msa0417660:intron | 40.0% | |
| ATGTAATTTCACTCTCGTGG+TGG | + | chr3_2:64943374-64943393 | Msa0417660:intron | 40.0% | |
| ! | CGTGGTGGTTTTTACAAAGA+TGG | + | chr3_2:64943389-64943408 | Msa0417660:intron | 40.0% |
| TTGAACTCAGCAAACCAAAG+AGG | + | chr3_2:64943430-64943449 | Msa0417660:intron | 40.0% | |
| TGAGTACAACGTTTCCTCTT+TGG | - | chr3_2:64943447-64943466 | None:intergenic | 40.0% | |
| ! | GTGTAACGGAGAACCGAAAA+TGG | + | chr3_2:64938861-64938880 | Msa0417660:exon | 45.0% |
| GTAGTGAAGAAATGGAACGG+TGG | - | chr3_2:64938986-64939005 | None:intergenic | 45.0% | |
| CCAGGAAGGTAGTGAAGAAA+TGG | - | chr3_2:64938994-64939013 | None:intergenic | 45.0% | |
| CCATTTCTTCACTACCTTCC+TGG | + | chr3_2:64938991-64939010 | Msa0417660:CDS | 45.0% | |
| AGATGTGAAACTGACCAGGA+AGG | - | chr3_2:64939008-64939027 | None:intergenic | 45.0% | |
| AGAGAGATGTGAAACTGACC+AGG | - | chr3_2:64939012-64939031 | None:intergenic | 45.0% | |
| ACGACAATCTCTCGCAAGAT+AGG | + | chr3_2:64939306-64939325 | Msa0417660:intron | 45.0% | |
| ! | GCTTAAGCTCACAAAAGTGC+AGG | + | chr3_2:64939589-64939608 | Msa0417660:intron | 45.0% |
| ! | AAAAGTGCAGGCAAGCTTTG+TGG | + | chr3_2:64939601-64939620 | Msa0417660:intron | 45.0% |
| CTCCTTGACAGAGTGACAAT+TGG | + | chr3_2:64939965-64939984 | Msa0417660:intron | 45.0% | |
| !! | GTTCTTGGTGTCAGTGAAGT+TGG | + | chr3_2:64940035-64940054 | Msa0417660:intron | 45.0% |
| ! | TGGCTTTGCTTGAGAAACAG+CGG | + | chr3_2:64940055-64940074 | Msa0417660:intron | 45.0% |
| ACAAAGCGTATAAGGAGAGG+AGG | + | chr3_2:64940187-64940206 | Msa0417660:intron | 45.0% | |
| TCTCTTAGAAGCGGAGGATT+TGG | + | chr3_2:64940226-64940245 | Msa0417660:intron | 45.0% | |
| GCTTAGAGTGTGTTTGGATG+AGG | + | chr3_2:64940264-64940283 | Msa0417660:intron | 45.0% | |
| ! | AGGAAAGCCTAGTTTGAGGT+GGG | - | chr3_2:64940495-64940514 | None:intergenic | 45.0% |
| AAGGAAAGCCTAGTTTGAGG+TGG | - | chr3_2:64940496-64940515 | None:intergenic | 45.0% | |
| TTGGTCAGACCTGCCAAATA+TGG | + | chr3_2:64940566-64940585 | Msa0417660:intron | 45.0% | |
| TGGTCAGACCTGCCAAATAT+GGG | + | chr3_2:64940567-64940586 | Msa0417660:intron | 45.0% | |
| AGATTGGACCCATATTTGGC+AGG | - | chr3_2:64940578-64940597 | None:intergenic | 45.0% | |
| CACGCACATCAAAGCAAAGA+TGG | + | chr3_2:64940669-64940688 | Msa0417660:intron | 45.0% | |
| GCACATCAAAGCAAAGATGG+CGG | + | chr3_2:64940672-64940691 | Msa0417660:intron | 45.0% | |
| !! | GCAAAGATGGCGGATAGATT+TGG | + | chr3_2:64940682-64940701 | Msa0417660:intron | 45.0% |
| GGCGGATAGATTTGGATCAT+TGG | + | chr3_2:64940690-64940709 | Msa0417660:intron | 45.0% | |
| AGGTAGAGTAGTAGTGAGAG+AGG | + | chr3_2:64940833-64940852 | Msa0417660:intron | 45.0% | |
| ! | TCTTTCTTTGAGGAGCTGTG+TGG | + | chr3_2:64940891-64940910 | Msa0417660:intron | 45.0% |
| GGGGCTCATGTCCAATAATT+AGG | - | chr3_2:64941141-64941160 | None:intergenic | 45.0% | |
| TTCCAGATCATGAGCGTTCT+GGG | - | chr3_2:64941161-64941180 | None:intergenic | 45.0% | |
| ! | GCTGAGTTGGGAAGTTAGTT+AGG | + | chr3_2:64941245-64941264 | Msa0417660:intron | 45.0% |
| ! | TCCCTATAACCATGCTGCTT+GGG | - | chr3_2:64941271-64941290 | None:intergenic | 45.0% |
| AAGCAGCATGGTTATAGGGA+GGG | + | chr3_2:64941271-64941290 | Msa0417660:intron | 45.0% | |
| GTAATGAGCCGAAATGGTGA+GGG | - | chr3_2:64941463-64941482 | None:intergenic | 45.0% | |
| AGTAATGAGCCGAAATGGTG+AGG | - | chr3_2:64941464-64941483 | None:intergenic | 45.0% | |
| GCAAGTCATGACACAAACCT+AGG | + | chr3_2:64941584-64941603 | Msa0417660:intron | 45.0% | |
| !! | GTCAGACTTAGCTCTAATGG+TGG | - | chr3_2:64941829-64941848 | None:intergenic | 45.0% |
| ACAAGGGCCAAACCAATAAC+TGG | - | chr3_2:64942072-64942091 | None:intergenic | 45.0% | |
| GTTTCTTTAGCTGGATCAGC+GGG | + | chr3_2:64942303-64942322 | Msa0417660:CDS | 45.0% | |
| ACAAATCTTCCCCATCAGTG+TGG | + | chr3_2:64942349-64942368 | Msa0417660:CDS | 45.0% | |
| AATTCCAGTCCACACTGATG+GGG | - | chr3_2:64942361-64942380 | None:intergenic | 45.0% | |
| CAATTCCAGTCCACACTGAT+GGG | - | chr3_2:64942362-64942381 | None:intergenic | 45.0% | |
| TGTCTTGATCAGGTAAGGAC+AGG | + | chr3_2:64942404-64942423 | Msa0417660:intron | 45.0% | |
| ! | TGCCCTAAGGGCACATATTA+AGG | - | chr3_2:64942981-64943000 | None:intergenic | 45.0% |
| ! | AACGCTAACTTGTGCCCTAA+GGG | - | chr3_2:64942993-64943012 | None:intergenic | 45.0% |
| ! | TAACGCTAACTTGTGCCCTA+AGG | - | chr3_2:64942994-64943013 | None:intergenic | 45.0% |
| ACGTTGTACTCACTCGAAGT+TGG | + | chr3_2:64943455-64943474 | Msa0417660:CDS | 45.0% | |
| !!! | ATTATTTGAAATAAAAATTA+CGG | - | chr3_2:64942626-64942645 | None:intergenic | 5.0% |
| ! | TTATGGGCGATTTTCGGTCC+TGG | + | chr3_2:64938895-64938914 | Msa0417660:CDS | 50.0% |
| GTGAAGAAATGGAACGGTGG+TGG | - | chr3_2:64938983-64939002 | None:intergenic | 50.0% | |
| CTCCTTATGATGAAGGGGAG+TGG | + | chr3_2:64939170-64939189 | Msa0417660:CDS | 50.0% | |
| CTCCACTCCCCTTCATCATA+AGG | - | chr3_2:64939175-64939194 | None:intergenic | 50.0% | |
| CTTATGATGAAGGGGAGTGG+AGG | + | chr3_2:64939173-64939192 | Msa0417660:CDS | 50.0% | |
| GTCAAGGAGTCGTGTAACCA+AGG | - | chr3_2:64939954-64939973 | None:intergenic | 50.0% | |
| GGCCAATTGTCACTCTGTCA+AGG | - | chr3_2:64939970-64939989 | None:intergenic | 50.0% | |
| GGCTTTGCTTGAGAAACAGC+GGG | + | chr3_2:64940056-64940075 | Msa0417660:intron | 50.0% | |
| !! | GAGGTGGGGGAATGTTTTGA+GGG | - | chr3_2:64940480-64940499 | None:intergenic | 50.0% |
| ! | TGAGGTGGGGGAATGTTTTG+AGG | - | chr3_2:64940481-64940500 | None:intergenic | 50.0% |
| ACATTCCCCCACCTCAAACT+AGG | + | chr3_2:64940485-64940504 | Msa0417660:intron | 50.0% | |
| ! | GAAAGCCTAGTTTGAGGTGG+GGG | - | chr3_2:64940493-64940512 | None:intergenic | 50.0% |
| ! | GGAAAGCCTAGTTTGAGGTG+GGG | - | chr3_2:64940494-64940513 | None:intergenic | 50.0% |
| TGGCAGGTCTGACCAATTGA+TGG | - | chr3_2:64940562-64940581 | None:intergenic | 50.0% | |
| TGATTCATCTCTTGTGGCCG+AGG | - | chr3_2:64940744-64940763 | None:intergenic | 50.0% | |
| CAGGCCAAACATAGCCTTCA+TGG | - | chr3_2:64940784-64940803 | None:intergenic | 50.0% | |
| CATGAAGGCTATGTTTGGCC+TGG | + | chr3_2:64940782-64940801 | Msa0417660:intron | 50.0% | |
| TCCAGATCATGAGCGTTCTG+GGG | - | chr3_2:64941160-64941179 | None:intergenic | 50.0% | |
| CTTCCAGATCATGAGCGTTC+TGG | - | chr3_2:64941162-64941181 | None:intergenic | 50.0% | |
| !! | AAAAAAAGGTGGGCTGTGGG+TGG | + | chr3_2:64941204-64941223 | Msa0417660:intron | 50.0% |
| !! | AAAAAAGGTGGGCTGTGGGT+GGG | + | chr3_2:64941205-64941224 | Msa0417660:intron | 50.0% |
| TTAGTTAGGCCCAAGCAGCA+TGG | + | chr3_2:64941259-64941278 | Msa0417660:intron | 50.0% | |
| GCCCAAGCAGCATGGTTATA+GGG | + | chr3_2:64941267-64941286 | Msa0417660:intron | 50.0% | |
| CTCCCTATAACCATGCTGCT+TGG | - | chr3_2:64941272-64941291 | None:intergenic | 50.0% | |
| CAAGCAGCATGGTTATAGGG+AGG | + | chr3_2:64941270-64941289 | Msa0417660:intron | 50.0% | |
| AGCAGCATGGTTATAGGGAG+GGG | + | chr3_2:64941272-64941291 | Msa0417660:intron | 50.0% | |
| TAGTGGTGAGAGAGGAGGTT+AGG | + | chr3_2:64941297-64941316 | Msa0417660:intron | 50.0% | |
| TGAGAGAGGAGGTTAGGCAT+GGG | + | chr3_2:64941303-64941322 | Msa0417660:intron | 50.0% | |
| GCAATTCCAGTCCACACTGA+TGG | - | chr3_2:64942363-64942382 | None:intergenic | 50.0% | |
| !! | TCAGTGTGGACTGGAATTGC+AGG | + | chr3_2:64942363-64942382 | Msa0417660:CDS | 50.0% |
| TCCTAACAGTCTTGAGCCAC+CGG | + | chr3_2:64943302-64943321 | Msa0417660:intron | 50.0% | |
| TGCAATATGAACCTACCCGG+TGG | - | chr3_2:64943321-64943340 | None:intergenic | 50.0% | |
| !! | GGTGGTGGAGCTACATACGA+CGG | - | chr3_2:64938968-64938987 | None:intergenic | 55.0% |
| !! | AAAAAGGTGGGCTGTGGGTG+GGG | + | chr3_2:64941206-64941225 | Msa0417660:intron | 55.0% |
| GGCCCAAGCAGCATGGTTAT+AGG | + | chr3_2:64941266-64941285 | Msa0417660:intron | 55.0% | |
| GGTTATAGGGAGGGGAGTAG+TGG | + | chr3_2:64941280-64941299 | Msa0417660:intron | 55.0% | |
| GTGAGAGAGGAGGTTAGGCA+TGG | + | chr3_2:64941302-64941321 | Msa0417660:intron | 55.0% | |
| TCTTCCCCATCAGTGTGGAC+TGG | + | chr3_2:64942354-64942373 | Msa0417660:CDS | 55.0% | |
| GGCACATGAGCAGCATAGTC+TGG | - | chr3_2:64943220-64943239 | None:intergenic | 55.0% | |
| CCTAACAGTCTTGAGCCACC+GGG | + | chr3_2:64943303-64943322 | Msa0417660:intron | 55.0% | |
| ! | ATTTTCGGTCCTGGCGTCGC+CGG | + | chr3_2:64938904-64938923 | Msa0417660:CDS | 60.0% |
| GTCAAGCCAGATCCACCAGC+CGG | - | chr3_2:64938944-64938963 | None:intergenic | 60.0% | |
| GCCCCAGAACGCTCATGATC+TGG | + | chr3_2:64941156-64941175 | Msa0417660:intron | 60.0% | |
| !! | AAAAGGTGGGCTGTGGGTGG+GGG | + | chr3_2:64941207-64941226 | Msa0417660:intron | 60.0% |
| GAGGGGAGTAGTGGTGAGAG+AGG | + | chr3_2:64941289-64941308 | Msa0417660:intron | 60.0% | |
| GGGAGTAGTGGTGAGAGAGG+AGG | + | chr3_2:64941292-64941311 | Msa0417660:intron | 60.0% | |
| CCCGGTGGCTCAAGACTGTT+AGG | - | chr3_2:64943306-64943325 | None:intergenic | 60.0% | |
| ACAGTCTTGAGCCACCGGGT+AGG | + | chr3_2:64943307-64943326 | Msa0417660:intron | 60.0% | |
| AAAACTGCTCCGGCGACGCC+AGG | - | chr3_2:64938916-64938935 | None:intergenic | 65.0% | |
| ! | GGCGTCGCCGGAGCAGTTTT+CGG | + | chr3_2:64938916-64938935 | Msa0417660:CDS | 65.0% |
| !! | GCCGGAGCAGTTTTCGGTGC+CGG | + | chr3_2:64938922-64938941 | Msa0417660:CDS | 65.0% |
| ! | GCCGGCACCGAAAACTGCTC+CGG | - | chr3_2:64938926-64938945 | None:intergenic | 65.0% |
| !!! | GAGCAGTTTTCGGTGCCGGC+TGG | + | chr3_2:64938926-64938945 | Msa0417660:CDS | 65.0% |
| !!! | CAGTTTTCGGTGCCGGCTGG+TGG | + | chr3_2:64938929-64938948 | Msa0417660:CDS | 65.0% |
| !! | AAAGGTGGGCTGTGGGTGGG+GGG | + | chr3_2:64941208-64941227 | Msa0417660:intron | 65.0% |
| GGCTGTGGGTGGGGGGAAAT+TGG | + | chr3_2:64941215-64941234 | Msa0417660:intron | 65.0% | |
| !! | TCGGTGCCGGCTGGTGGATC+TGG | + | chr3_2:64938935-64938954 | Msa0417660:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 64938816 | 64943491 | 64938816 | ID=Msa0417660;Name=Msa0417660 |
| chr3_2 | mRNA | 64938816 | 64943491 | 64938816 | ID=Msa0417660-mRNA-1;Parent=Msa0417660;Name=Msa0417660-mRNA-1;_AED=0.22;_eAED=0.31;_QI=64|0.66|0.75|1|0.66|0.75|4|0|141 |
| chr3_2 | exon | 64938816 | 64939012 | 64938816 | ID=Msa0417660-mRNA-1:exon:14506;Parent=Msa0417660-mRNA-1 |
| chr3_2 | exon | 64939107 | 64939194 | 64939107 | ID=Msa0417660-mRNA-1:exon:14507;Parent=Msa0417660-mRNA-1 |
| chr3_2 | exon | 64942263 | 64942415 | 64942263 | ID=Msa0417660-mRNA-1:exon:14508;Parent=Msa0417660-mRNA-1 |
| chr3_2 | exon | 64943440 | 64943491 | 64943440 | ID=Msa0417660-mRNA-1:exon:14509;Parent=Msa0417660-mRNA-1 |
| chr3_2 | five_prime_UTR | 64938816 | 64938879 | 64938816 | ID=Msa0417660-mRNA-1:five_prime_utr;Parent=Msa0417660-mRNA-1 |
| chr3_2 | CDS | 64938880 | 64939012 | 64938880 | ID=Msa0417660-mRNA-1:cds;Parent=Msa0417660-mRNA-1 |
| chr3_2 | CDS | 64939107 | 64939194 | 64939107 | ID=Msa0417660-mRNA-1:cds;Parent=Msa0417660-mRNA-1 |
| chr3_2 | CDS | 64942263 | 64942415 | 64942263 | ID=Msa0417660-mRNA-1:cds;Parent=Msa0417660-mRNA-1 |
| chr3_2 | CDS | 64943440 | 64943491 | 64943440 | ID=Msa0417660-mRNA-1:cds;Parent=Msa0417660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
