AlfalfaGEDB | Msa0417680

M. sativa cultivar zhongmu-4 / Msa0417680

KEGG: K13414|K20605
GO: GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0417680	GAU31237.1	70.182	275	57	6	1	256	117	385	3.84e-118	356

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0417680	sp\|Q39008\|M3K1_ARATH	67.284	162	52	1	83	243	349	510	6.61e-67	221

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0417680	A0A2Z6NN22	70.182	275	57	6	1	256	117	385	1.83e-118	356

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0417680	Msa0484780	0.806932	6.468974e-50	-8.615850e-47
Msa0417680	Msa1082500	0.802637	5.104690e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0417680	MtrunA17_Chr3g0115171	83.333	174	26	1	83	256	299	469	4.67e-97	295
Msa0417680	MtrunA17_Chr3g0115171	57.143	77	28	2	1	72	135	211	1.37e-15	75.9
Msa0417680	MtrunA17_Chr5g0424501	58.678	242	64	4	46	256	142	378	1.31e-85	262
Msa0417680	MtrunA17_Chr5g0424581	73.563	174	43	1	83	256	141	311	8.40e-85	258
Msa0417680	MtrunA17_Chr5g0424531	74.556	169	40	1	88	256	37	202	1.44e-84	254
Msa0417680	MtrunA17_Chr5g0424651	73.563	174	43	1	83	256	337	507	4.36e-83	259
Msa0417680	MtrunA17_Chr4g0051191	64.130	184	54	3	82	256	170	350	2.55e-74	233
Msa0417680	MtrunA17_Chr8g0386981	51.351	148	70	2	94	239	436	583	1.27e-40	149
Msa0417680	MtrunA17_Chr1g0202831	48.322	149	75	2	94	240	439	587	1.60e-37	140
Msa0417680	MtrunA17_Chr3g0130151	44.118	170	89	4	89	256	267	432	3.12e-37	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0417680	AT4G08500.1	67.284	162	52	1	83	243	349	510	6.71e-68	221
Msa0417680	AT4G08470.3	63.057	157	57	1	88	243	242	398	1.27e-61	201
Msa0417680	AT4G08470.1	63.057	157	57	1	88	243	324	480	5.81e-61	201
Msa0417680	AT4G08470.2	64.189	148	53	0	88	235	324	471	1.39e-60	199
Msa0417680	AT4G08480.1	59.412	170	65	2	88	256	522	688	1.37e-59	201
Msa0417680	AT4G12020.4	55.618	178	66	4	83	256	1634	1802	3.35e-50	177
Msa0417680	AT4G12020.2	55.618	178	66	4	83	256	1642	1810	3.55e-50	177
Msa0417680	AT4G12020.5	55.618	178	66	4	83	256	1567	1735	4.49e-50	176
Msa0417680	AT4G12020.7	60.000	155	54	2	83	235	1634	1782	4.65e-49	174
Msa0417680	AT4G12020.1	60.000	155	54	2	83	235	1642	1790	4.75e-49	174

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Find 65 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGTGTCTCTCAAC+TGG	0.413057	3_2:+64966684	Msa0417680:CDS
AAAAGCTGATGTTTGGAGTT+TGG	0.264282	3_2:+64969659	Msa0417680:CDS
AAAGAAGGTGAGGGTAAGTT+AGG	0.339802	3_2:+64965191	Msa0417680:CDS
AAAGCTGATGTTTGGAGTTT+GGG	0.332678	3_2:+64969660	Msa0417680:CDS
AAAGGAAAGAACGATGGTTA+TGG	0.445002	3_2:+64969631	Msa0417680:CDS
AAGAAGGTGAGGGTAAGTTA+GGG	0.532616	3_2:+64965192	Msa0417680:CDS
AAGTGTCTCTCAACTGGAGC+AGG	0.504432	3_2:+64966690	Msa0417680:CDS
AAGTTTCATTGCTTGATCAA+AGG	0.511785	3_2:+64966653	Msa0417680:CDS
AATATATTGGTGCATGCAAG+TGG	0.617521	3_2:+64969236	Msa0417680:CDS
AATGATGTTAAATCATGCAA+GGG	0.573878	3_2:+64969440	Msa0417680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTACACTTGATTTCCCATT+AGG	-	chr3_2:64965345-64965364	None:intergenic	30.0%
ATCAAGTGTAAAATTACACC+TGG	+	chr3_2:64965353-64965372	Msa0417680:intron	30.0%
GTAGTTGAGGAATTTATGAT+TGG	+	chr3_2:64965628-64965647	Msa0417680:intron	30.0%
GTTCATTTCAAGAATATTGC+TGG	+	chr3_2:64965659-64965678	Msa0417680:intron	30.0%
ATTTCAAGAATATTGCTGGA+TGG	+	chr3_2:64965663-64965682	Msa0417680:intron	30.0%
TTTCAAGAATATTGCTGGAT+GGG	+	chr3_2:64965664-64965683	Msa0417680:intron	30.0%
TGCTATCTCTTTCAATATAG+TGG	+	chr3_2:64965719-64965738	Msa0417680:intron	30.0%
TTTACTAACATTCATCTCTC+CGG	+	chr3_2:64965789-64965808	Msa0417680:intron	30.0%
CAAAATTTAAGGGTAGCTAA+CGG	+	chr3_2:64965823-64965842	Msa0417680:intron	30.0%
TCGTATTGTTCATTCTGATT+AGG	+	chr3_2:64966214-64966233	Msa0417680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	64964954	64969705	64964954	ID=Msa0417680;Name=Msa0417680
chr3_2	mRNA	64964954	64969705	64964954	ID=Msa0417680-mRNA-1;Parent=Msa0417680;Name=Msa0417680-mRNA-1;_AED=0.22;_eAED=0.26;_QI=0\|0\|0\|1\|1\|1\|7\|0\|259
chr3_2	exon	64964954	64965213	64964954	ID=Msa0417680-mRNA-1:exon:14499;Parent=Msa0417680-mRNA-1
chr3_2	exon	64966627	64966711	64966627	ID=Msa0417680-mRNA-1:exon:14500;Parent=Msa0417680-mRNA-1
chr3_2	exon	64966930	64966992	64966930	ID=Msa0417680-mRNA-1:exon:14501;Parent=Msa0417680-mRNA-1
chr3_2	exon	64968443	64968600	64968443	ID=Msa0417680-mRNA-1:exon:14502;Parent=Msa0417680-mRNA-1
chr3_2	exon	64969220	64969292	64969220	ID=Msa0417680-mRNA-1:exon:14503;Parent=Msa0417680-mRNA-1
chr3_2	exon	64969428	64969487	64969428	ID=Msa0417680-mRNA-1:exon:14504;Parent=Msa0417680-mRNA-1
chr3_2	exon	64969625	64969705	64969625	ID=Msa0417680-mRNA-1:exon:14505;Parent=Msa0417680-mRNA-1
chr3_2	CDS	64964954	64965213	64964954	ID=Msa0417680-mRNA-1:cds;Parent=Msa0417680-mRNA-1
chr3_2	CDS	64966627	64966711	64966627	ID=Msa0417680-mRNA-1:cds;Parent=Msa0417680-mRNA-1
chr3_2	CDS	64966930	64966992	64966930	ID=Msa0417680-mRNA-1:cds;Parent=Msa0417680-mRNA-1
chr3_2	CDS	64968443	64968600	64968443	ID=Msa0417680-mRNA-1:cds;Parent=Msa0417680-mRNA-1
chr3_2	CDS	64969220	64969292	64969220	ID=Msa0417680-mRNA-1:cds;Parent=Msa0417680-mRNA-1
chr3_2	CDS	64969428	64969487	64969428	ID=Msa0417680-mRNA-1:cds;Parent=Msa0417680-mRNA-1
chr3_2	CDS	64969625	64969705	64969625	ID=Msa0417680-mRNA-1:cds;Parent=Msa0417680-mRNA-1

Gene Sequence

>Msa0417680

TTGACTGAGAATTCTGAAGACAGTGATAGGATTAGAGATGAGCCTGCTGAGACTGTTGTTGTTGTTGGTGACGAGGGTATCAATGGTATTCATCCACCTATAGTGAAGTCACCACCGGGGACGAAGATTCCAGTTGTTGACAATAACACTTGTTCCACTTGGGATCTTTTGAAGGAATTGTTTCAGGTAAGGGAAGGCGAAGAAGGGCTTTTTGACGATGAACAGGAAGTGGCGGGGAAAGAAGGTGAGGGTAAGTTAGGCGATGGATTCTTTTTTGATGTAAAAGAAGTTTCATTGCTTGATCAAAGGGATCGGGGAAAACAAAGTGTCTCTCAACTGGAGCAGGAAATCGCACTTTTGAGTCGTTTTAAACATGACAATATAGTTCAATACTATGGTACTGAAATGGATGAATCCAAGCTGTATATATTCATTGAACTTGTAACCAAAGGTTCTCTTAGAAGCCTATATCAGAGGTACACTCTTCAAGATTCCCAAGTATCTGTCTATACAAGACAGATTCTGCATGGTTTGAAATATCTTCATGATCAAAATGTGGTTCACAGGGATGTCAAATGTGCAAATATATTGGTGCATGCAAGTGGATCTGTCAAACTCGCCGATTTTGAGTTAGCAAAGGAAACCAAATTGAATGATGTTAAATCATGCAAGGGGACAACATTTTGGATGGCCCCTGAGGTCGTGAAAGGAAAGAACGATGGTTATGGCCTTCAAAAGCTGATGTTTGGAGTTTGGGATGCACTGTGCTGGAGATGCTAA

Protein sequence

>Msa0417680

LTENSEDSDRIRDEPAETVVVVGDEGINGIHPPIVKSPPGTKIPVVDNNTCSTWDLLKELFQVREGEEGLFDDEQEVAGKEGEGKLGDGFFFDVKEVSLLDQRDRGKQSVSQLEQEIALLSRFKHDNIVQYYGTEMDESKLYIFIELVTKGSLRSLYQRYTLQDSQVSVYTRQILHGLKYLHDQNVVHRDVKCANILVHASGSVKLADFELAKETKLNDVKSCKGTTFWMAPEVVKGKNDGYGLQKLMFGVWDALCWRC*