AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417900 MtrunA17_Chr3g0115421 89.091 165 2 1 1 165 1 149 4.32e-103 292
Msa0417900 MtrunA17_Chr8g0382721 56.213 169 54 3 1 165 1 153 1.06e-54 169
Msa0417900 MtrunA17_Chr3g0124411 54.706 170 54 4 1 165 1 152 3.14e-54 168
Msa0417900 MtrunA17_Chr4g0036931 47.368 171 64 4 5 165 2 156 5.20e-46 147
Msa0417900 MtrunA17_Chr1g0160201 46.012 163 69 3 5 165 2 147 1.76e-43 141
Msa0417900 MtrunA17_Chr3g0145621 43.023 172 75 3 1 165 1 156 2.74e-43 140
Msa0417900 MtrunA17_Chr5g0405811 44.186 172 69 5 5 165 2 157 4.99e-41 135
Msa0417900 MtrunA17_Chr5g0407821 42.236 161 76 2 5 165 2 145 6.68e-40 132
Msa0417900 MtrunA17_Chr6g0448861 40.000 170 77 4 5 165 2 155 5.67e-38 127
Msa0417900 MtrunA17_Chr7g0251491 39.264 163 79 4 5 165 26 170 3.08e-33 115
Msa0417900 MtrunA17_Chr5g0422891 34.356 163 88 3 5 165 2 147 4.65e-28 102
Msa0417900 MtrunA17_Chr6g0471231 34.694 147 65 5 33 165 11 140 7.17e-16 70.1
Msa0417900 MtrunA17_Chr2g0325601 31.169 154 71 5 30 165 6 142 1.08e-15 69.7
Msa0417900 MtrunA17_Chr1g0189221 41.237 97 37 3 26 118 53 133 3.48e-15 69.3
Msa0417900 MtrunA17_Chr6g0460361 38.462 104 53 4 72 165 8 110 7.88e-13 61.6
Msa0417900 MtrunA17_Chr1g0198341 40.244 82 33 1 25 106 3 68 2.80e-12 59.3
Msa0417900 MtrunA17_Chr7g0218981 35.366 82 37 1 25 106 3 68 1.41e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417900 AT4G08570.1 68.675 166 35 2 1 165 1 150 6.34e-77 226
Msa0417900 AT4G39700.1 54.023 174 55 4 1 165 1 158 9.69e-53 165
Msa0417900 AT1G22990.1 50.000 168 60 4 5 165 2 152 6.12e-52 163
Msa0417900 AT1G22990.2 47.904 167 60 5 5 165 2 147 6.35e-48 152
Msa0417900 AT1G71050.1 47.619 168 69 4 1 165 1 152 3.34e-45 145
Msa0417900 AT4G38580.1 44.379 169 74 3 1 165 1 153 2.70e-41 136
Msa0417900 AT4G38580.2 44.379 169 74 3 1 165 1 153 2.70e-41 136
Msa0417900 AT5G66110.3 45.342 161 67 4 10 165 3 147 1.33e-40 134
Msa0417900 AT5G66110.1 45.342 161 67 4 10 165 3 147 1.33e-40 134
Msa0417900 AT5G66110.2 47.445 137 51 4 34 165 1 121 9.00e-36 120
Msa0417900 AT4G35060.1 36.905 168 83 4 5 165 2 153 2.32e-33 115
Msa0417900 AT5G17450.1 39.881 168 74 5 5 165 2 149 1.05e-31 111
Msa0417900 AT5G17450.2 46.000 100 46 3 70 165 10 105 3.15e-23 88.6
Msa0417900 AT2G18196.1 36.242 149 70 6 26 165 46 178 1.94e-19 80.9
Msa0417900 AT1G06330.1 31.707 164 71 4 27 165 3 150 4.28e-18 76.6
Msa0417900 AT2G18196.2 34.752 141 67 6 34 165 1 125 1.08e-15 69.7
Msa0417900 AT4G10465.1 32.692 156 80 5 19 165 44 183 6.99e-15 68.9
Msa0417900 AT3G56891.1 28.313 166 74 5 28 165 18 166 4.40e-14 66.6
Msa0417900 AT1G29100.2 32.515 163 71 6 25 165 2 147 1.16e-13 65.1
Msa0417900 AT3G56891.2 29.375 160 68 6 34 165 1 143 3.38e-13 63.5
Msa0417900 AT1G29100.1 30.380 158 71 5 30 165 1 141 1.33e-12 62.0
Msa0417900 AT1G66240.1 37.931 87 38 1 20 106 27 97 2.62e-12 60.5
Msa0417900 AT3G56240.3 37.805 82 35 1 26 107 3 68 9.45e-12 59.3
Msa0417900 AT3G56240.1 37.805 82 35 1 26 107 3 68 9.45e-12 59.3

Find 50 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTAATTTCTCACCCCTTA+TGG 0.244698 3_2:+65237239 Msa0417900:three_prime_UTR
AAGGTTAAGCATGTCCTTTC+TGG 0.256831 3_2:+65236326 Msa0417900:CDS
GCAACCTTTCTAACCATATT+AGG 0.261201 3_2:-65237108 None:intergenic
CATGTCCTTTCTGGTGTTAA+AGG 0.262150 3_2:+65236335 Msa0417900:CDS
TCATAGGCTTGTGAAATATA+AGG 0.273413 3_2:-65237072 None:intergenic
GATAATGATGATTGATTGTT+AGG 0.273640 3_2:+65237433 Msa0417900:three_prime_UTR
GCAGCTTTCAACACTTTCTT+TGG 0.279745 3_2:-65236988 None:intergenic
GTAAATCAGATAAGTATTCT+AGG 0.300083 3_2:-65236220 None:intergenic
TGAGGAGAAAATAATGTAAT+AGG 0.320083 3_2:+65237273 Msa0417900:three_prime_UTR
AAGCTCGACCTTCTTCTTTG+TGG 0.324613 3_2:-65237016 None:intergenic
CAAGTATGAGAACAAAATTA+TGG 0.356872 3_2:-65236045 None:intergenic
TAAGAAAGCACCTCCTAATA+TGG 0.356938 3_2:+65237095 Msa0417900:CDS
GCCTTATGTTCCATACACTA+TGG 0.372587 3_2:+65237041 Msa0417900:CDS
AGGAGGTGCTTTCTTATCAT+AGG 0.375360 3_2:-65237088 None:intergenic
TACATAATAGAACAAGCATT+TGG 0.390614 3_2:-65237198 None:intergenic
ATTCAAGAAATAAATTACTT+TGG 0.413240 3_2:-65236129 None:intergenic
GATTGTTAGGGTGGTTGAAA+TGG 0.420007 3_2:+65237446 Msa0417900:three_prime_UTR
TCAAAGTGTGATTACCATAA+GGG 0.421588 3_2:-65237253 None:intergenic
CTCAAAGTGTGATTACCATA+AGG 0.439579 3_2:-65237254 None:intergenic
GAGATAGAGATATGTGATAG+AGG 0.442292 3_2:+65237314 Msa0417900:three_prime_UTR
CATAGGCTTGTGAAATATAA+GGG 0.443566 3_2:-65237071 None:intergenic
ACCTCCTAATATGGTTAGAA+AGG 0.456268 3_2:+65237104 Msa0417900:CDS
AATTGACTGATTGAAGTGTA+TGG 0.461832 3_2:-65236006 None:intergenic
ACCATAGTGTATGGAACATA+AGG 0.464116 3_2:-65237042 None:intergenic
CAAAGAAGAAGGTCGAGCTT+TGG 0.473456 3_2:+65237019 Msa0417900:CDS
AACATAGCTATCATCAAAAG+TGG 0.479724 3_2:-65237154 None:intergenic
GGGTGAGCCACCATAGTGTA+TGG 0.494549 3_2:-65237051 None:intergenic
CTTATGGTAATCACACTTTG+AGG 0.514753 3_2:+65237255 Msa0417900:three_prime_UTR
TGTATCTCTTAAAATCAGAA+TGG 0.514900 3_2:+65236283 Msa0417900:CDS
TGCTCAATCCACAAAGAAGA+AGG 0.516180 3_2:+65237008 Msa0417900:CDS
AGGAGCTAAGAAAGTGGATG+TGG 0.538304 3_2:+65236793 Msa0417900:intron
AGGAGCTAAGAAAGTGGATG+TGG 0.538304 3_2:+65236924 Msa0417900:intron
ATAATGATGATTGATTGTTA+GGG 0.541805 3_2:+65237434 Msa0417900:three_prime_UTR
AAGTGTATGGAAATATAGAA+AGG 0.553419 3_2:-65235993 None:intergenic
TAAATCAGATAAGTATTCTA+GGG 0.560242 3_2:-65236219 None:intergenic
CTGTGAAGGTTGTGCTCGCA+AGG 0.570301 3_2:+65236307 Msa0417900:CDS
ATGATGATTGATTGTTAGGG+TGG 0.571522 3_2:+65237437 Msa0417900:three_prime_UTR
ACCTTTCTAACCATATTAGG+AGG 0.574085 3_2:-65237105 None:intergenic
CAGCAGAAAGTAACAGTGAG+TGG 0.576096 3_2:+65236955 Msa0417900:CDS
TTGAACAGGAGCTAAGAAAG+TGG 0.579198 3_2:+65236787 Msa0417900:intron
TTGAACAGGAGCTAAGAAAG+TGG 0.579198 3_2:+65236918 Msa0417900:intron
CTTGAACAAACTAGAGTGGT+CGG 0.587830 3_2:+65236064 Msa0417900:five_prime_UTR
CAAAGTGTGATTACCATAAG+GGG 0.600902 3_2:-65237252 None:intergenic
CTCTTTATATATAAAAGCAA+AGG 0.608494 3_2:+65236106 Msa0417900:five_prime_UTR
AAAATCAGAATGGACTGTGA+AGG 0.610949 3_2:+65236293 Msa0417900:CDS
TTATGTTCCATACACTATGG+TGG 0.612160 3_2:+65237044 Msa0417900:CDS
AAGTACCTTTAACACCAGAA+AGG 0.613905 3_2:-65236340 None:intergenic
CATACTTGAACAAACTAGAG+TGG 0.652576 3_2:+65236060 Msa0417900:five_prime_UTR
TGGTTGAAATGGAACACACT+TGG 0.653186 3_2:+65237457 Msa0417900:three_prime_UTR
AGCAAGCTAGCATCATTGTG+AGG 0.686975 3_2:+65236158 Msa0417900:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGAATAATTTTAAATTG+TGG - chr3_2:65236531-65236550 None:intergenic 10.0%
!!! TAATGAATAATTTTAAATTG+TGG - chr3_2:65236531-65236550 None:intergenic 10.0%
!! ATTCAAGAAATAAATTACTT+TGG - chr3_2:65236132-65236151 None:intergenic 15.0%
!!! ATTGTTTTTAGTTCATTTAT+TGG + chr3_2:65236749-65236768 Msa0417900:intron 15.0%
!!! AATTAATTTGAAATTTGAAC+AGG + chr3_2:65236773-65236792 Msa0417900:intron 15.0%
!!! ATTGTTTTTAGTTCATTTAT+TGG + chr3_2:65236749-65236768 Msa0417900:intron 15.0%
!!! AATTAATTTGAAATTTGAAC+AGG + chr3_2:65236773-65236792 Msa0417900:intron 15.0%
!!! GATAATAATATAATTTTGCA+TGG + chr3_2:65237390-65237409 Msa0417900:three_prime_UTR 15.0%
!! ATTCAAGAAATAAATTACTT+TGG - chr3_2:65236132-65236151 None:intergenic 15.0%
!!! ATTGTTTTTAGTTCATTTAT+TGG + chr3_2:65236749-65236768 Msa0417900:intron 15.0%
!!! AATTAATTTGAAATTTGAAC+AGG + chr3_2:65236773-65236792 Msa0417900:intron 15.0%
!!! ATTGTTTTTAGTTCATTTAT+TGG + chr3_2:65236749-65236768 Msa0417900:intron 15.0%
!!! AATTAATTTGAAATTTGAAC+AGG + chr3_2:65236773-65236792 Msa0417900:intron 15.0%
!!! GATAATAATATAATTTTGCA+TGG + chr3_2:65237390-65237409 Msa0417900:three_prime_UTR 15.0%
!! CTCTTTATATATAAAAGCAA+AGG + chr3_2:65236106-65236125 Msa0417900:five_prime_UTR 20.0%
!! TAAATCAGATAAGTATTCTA+GGG - chr3_2:65236222-65236241 None:intergenic 20.0%
!!! TATTGTTTTTAGTTCATTTG+AGG + chr3_2:65236549-65236568 Msa0417900:intron 20.0%
!!! ATTGTTTTTAGTTCATTTGA+GGG + chr3_2:65236550-65236569 Msa0417900:intron 20.0%
!! AACCTTTAGTGTAAAAAATA+GGG + chr3_2:65236642-65236661 Msa0417900:intron 20.0%
!! ATAATGATGATTGATTGTTA+GGG + chr3_2:65237434-65237453 Msa0417900:three_prime_UTR 20.0%
!! CTCTTTATATATAAAAGCAA+AGG + chr3_2:65236106-65236125 Msa0417900:five_prime_UTR 20.0%
!! TAAATCAGATAAGTATTCTA+GGG - chr3_2:65236222-65236241 None:intergenic 20.0%
!!! TATTGTTTTTAGTTCATTTG+AGG + chr3_2:65236549-65236568 Msa0417900:intron 20.0%
!!! ATTGTTTTTAGTTCATTTGA+GGG + chr3_2:65236550-65236569 Msa0417900:intron 20.0%
!! AACCTTTAGTGTAAAAAATA+GGG + chr3_2:65236642-65236661 Msa0417900:intron 20.0%
!! ATAATGATGATTGATTGTTA+GGG + chr3_2:65237434-65237453 Msa0417900:three_prime_UTR 20.0%
! AAGTGTATGGAAATATAGAA+AGG - chr3_2:65235996-65236015 None:intergenic 25.0%
! CAAGTATGAGAACAAAATTA+TGG - chr3_2:65236048-65236067 None:intergenic 25.0%
! GTAAATCAGATAAGTATTCT+AGG - chr3_2:65236223-65236242 None:intergenic 25.0%
! TGTATCTCTTAAAATCAGAA+TGG + chr3_2:65236283-65236302 Msa0417900:CDS 25.0%
!!! TTGTTTTTAGTTCATTTGAG+GGG + chr3_2:65236551-65236570 Msa0417900:intron 25.0%
! CAACCTTTAGTGTAAAAAAT+AGG + chr3_2:65236641-65236660 Msa0417900:intron 25.0%
!!! TACCCTATTTTTTACACTAA+AGG - chr3_2:65236647-65236666 None:intergenic 25.0%
! TACATAATAGAACAAGCATT+TGG - chr3_2:65237201-65237220 None:intergenic 25.0%
! TGAGGAGAAAATAATGTAAT+AGG + chr3_2:65237273-65237292 Msa0417900:three_prime_UTR 25.0%
! GATAATGATGATTGATTGTT+AGG + chr3_2:65237433-65237452 Msa0417900:three_prime_UTR 25.0%
! AAGTGTATGGAAATATAGAA+AGG - chr3_2:65235996-65236015 None:intergenic 25.0%
! CAAGTATGAGAACAAAATTA+TGG - chr3_2:65236048-65236067 None:intergenic 25.0%
! GTAAATCAGATAAGTATTCT+AGG - chr3_2:65236223-65236242 None:intergenic 25.0%
! TGTATCTCTTAAAATCAGAA+TGG + chr3_2:65236283-65236302 Msa0417900:CDS 25.0%
!!! TTGTTTTTAGTTCATTTGAG+GGG + chr3_2:65236551-65236570 Msa0417900:intron 25.0%
! CAACCTTTAGTGTAAAAAAT+AGG + chr3_2:65236641-65236660 Msa0417900:intron 25.0%
!!! TACCCTATTTTTTACACTAA+AGG - chr3_2:65236647-65236666 None:intergenic 25.0%
! TACATAATAGAACAAGCATT+TGG - chr3_2:65237201-65237220 None:intergenic 25.0%
! TGAGGAGAAAATAATGTAAT+AGG + chr3_2:65237273-65237292 Msa0417900:three_prime_UTR 25.0%
! GATAATGATGATTGATTGTT+AGG + chr3_2:65237433-65237452 Msa0417900:three_prime_UTR 25.0%
AATTGACTGATTGAAGTGTA+TGG - chr3_2:65236009-65236028 None:intergenic 30.0%
! AAACGAGGCAATGATTTTTA+AGG - chr3_2:65236396-65236415 None:intergenic 30.0%
!! CATTGCCTCGTTTTAAATTA+CGG + chr3_2:65236403-65236422 Msa0417900:intron 30.0%
! ACTTTTATATTGCGCAATTG+TGG + chr3_2:65236498-65236517 Msa0417900:intron 30.0%
TTACACTAAAGGTTGTTTAC+AGG - chr3_2:65236636-65236655 None:intergenic 30.0%
CATAGGCTTGTGAAATATAA+GGG - chr3_2:65237074-65237093 None:intergenic 30.0%
TCATAGGCTTGTGAAATATA+AGG - chr3_2:65237075-65237094 None:intergenic 30.0%
!! AAAAGTGGACTCTTTTATGT+TGG - chr3_2:65237142-65237161 None:intergenic 30.0%
AACATAGCTATCATCAAAAG+TGG - chr3_2:65237157-65237176 None:intergenic 30.0%
TCAAAGTGTGATTACCATAA+GGG - chr3_2:65237256-65237275 None:intergenic 30.0%
AATTGACTGATTGAAGTGTA+TGG - chr3_2:65236009-65236028 None:intergenic 30.0%
! AAACGAGGCAATGATTTTTA+AGG - chr3_2:65236396-65236415 None:intergenic 30.0%
!! CATTGCCTCGTTTTAAATTA+CGG + chr3_2:65236403-65236422 Msa0417900:intron 30.0%
! ACTTTTATATTGCGCAATTG+TGG + chr3_2:65236498-65236517 Msa0417900:intron 30.0%
TTACACTAAAGGTTGTTTAC+AGG - chr3_2:65236636-65236655 None:intergenic 30.0%
CATAGGCTTGTGAAATATAA+GGG - chr3_2:65237074-65237093 None:intergenic 30.0%
TCATAGGCTTGTGAAATATA+AGG - chr3_2:65237075-65237094 None:intergenic 30.0%
!! AAAAGTGGACTCTTTTATGT+TGG - chr3_2:65237142-65237161 None:intergenic 30.0%
AACATAGCTATCATCAAAAG+TGG - chr3_2:65237157-65237176 None:intergenic 30.0%
TCAAAGTGTGATTACCATAA+GGG - chr3_2:65237256-65237275 None:intergenic 30.0%
CATACTTGAACAAACTAGAG+TGG + chr3_2:65236060-65236079 Msa0417900:five_prime_UTR 35.0%
AGCAAGAAGAAGCAGAAAAA+TGG + chr3_2:65236184-65236203 Msa0417900:exon 35.0%
GCAAGAAGAAGCAGAAAAAT+GGG + chr3_2:65236185-65236204 Msa0417900:exon 35.0%
!! AAAATCAGAATGGACTGTGA+AGG + chr3_2:65236293-65236312 Msa0417900:CDS 35.0%
AAGTACCTTTAACACCAGAA+AGG - chr3_2:65236343-65236362 None:intergenic 35.0%
! TGCAACCGTAATTTAAAACG+AGG - chr3_2:65236411-65236430 None:intergenic 35.0%
AAGAGCTTCAACACTTTCTT+TGG - chr3_2:65236860-65236879 None:intergenic 35.0%
ACCATAGTGTATGGAACATA+AGG - chr3_2:65237045-65237064 None:intergenic 35.0%
TTATGTTCCATACACTATGG+TGG + chr3_2:65237044-65237063 Msa0417900:CDS 35.0%
!! TAAGAAAGCACCTCCTAATA+TGG + chr3_2:65237095-65237114 Msa0417900:CDS 35.0%
ACCTCCTAATATGGTTAGAA+AGG + chr3_2:65237104-65237123 Msa0417900:CDS 35.0%
ACCTTTCTAACCATATTAGG+AGG - chr3_2:65237108-65237127 None:intergenic 35.0%
GCAACCTTTCTAACCATATT+AGG - chr3_2:65237111-65237130 None:intergenic 35.0%
GATTAATTTCTCACCCCTTA+TGG + chr3_2:65237239-65237258 Msa0417900:three_prime_UTR 35.0%
CAAAGTGTGATTACCATAAG+GGG - chr3_2:65237255-65237274 None:intergenic 35.0%
CTCAAAGTGTGATTACCATA+AGG - chr3_2:65237257-65237276 None:intergenic 35.0%
CTTATGGTAATCACACTTTG+AGG + chr3_2:65237255-65237274 Msa0417900:three_prime_UTR 35.0%
GAGATAGAGATATGTGATAG+AGG + chr3_2:65237314-65237333 Msa0417900:three_prime_UTR 35.0%
ATGATGATTGATTGTTAGGG+TGG + chr3_2:65237437-65237456 Msa0417900:three_prime_UTR 35.0%
CATACTTGAACAAACTAGAG+TGG + chr3_2:65236060-65236079 Msa0417900:five_prime_UTR 35.0%
AGCAAGAAGAAGCAGAAAAA+TGG + chr3_2:65236184-65236203 Msa0417900:exon 35.0%
GCAAGAAGAAGCAGAAAAAT+GGG + chr3_2:65236185-65236204 Msa0417900:exon 35.0%
!! AAAATCAGAATGGACTGTGA+AGG + chr3_2:65236293-65236312 Msa0417900:CDS 35.0%
AAGTACCTTTAACACCAGAA+AGG - chr3_2:65236343-65236362 None:intergenic 35.0%
! TGCAACCGTAATTTAAAACG+AGG - chr3_2:65236411-65236430 None:intergenic 35.0%
AAGAGCTTCAACACTTTCTT+TGG - chr3_2:65236860-65236879 None:intergenic 35.0%
ACCATAGTGTATGGAACATA+AGG - chr3_2:65237045-65237064 None:intergenic 35.0%
TTATGTTCCATACACTATGG+TGG + chr3_2:65237044-65237063 Msa0417900:CDS 35.0%
!! TAAGAAAGCACCTCCTAATA+TGG + chr3_2:65237095-65237114 Msa0417900:CDS 35.0%
ACCTCCTAATATGGTTAGAA+AGG + chr3_2:65237104-65237123 Msa0417900:CDS 35.0%
ACCTTTCTAACCATATTAGG+AGG - chr3_2:65237108-65237127 None:intergenic 35.0%
GCAACCTTTCTAACCATATT+AGG - chr3_2:65237111-65237130 None:intergenic 35.0%
GATTAATTTCTCACCCCTTA+TGG + chr3_2:65237239-65237258 Msa0417900:three_prime_UTR 35.0%
CAAAGTGTGATTACCATAAG+GGG - chr3_2:65237255-65237274 None:intergenic 35.0%
CTCAAAGTGTGATTACCATA+AGG - chr3_2:65237257-65237276 None:intergenic 35.0%
CTTATGGTAATCACACTTTG+AGG + chr3_2:65237255-65237274 Msa0417900:three_prime_UTR 35.0%
GAGATAGAGATATGTGATAG+AGG + chr3_2:65237314-65237333 Msa0417900:three_prime_UTR 35.0%
ATGATGATTGATTGTTAGGG+TGG + chr3_2:65237437-65237456 Msa0417900:three_prime_UTR 35.0%
CTTGAACAAACTAGAGTGGT+CGG + chr3_2:65236064-65236083 Msa0417900:five_prime_UTR 40.0%
! AAGCAGAAAAATGGGAGTAC+AGG + chr3_2:65236193-65236212 Msa0417900:exon 40.0%
! AGCAGAAAAATGGGAGTACA+GGG + chr3_2:65236194-65236213 Msa0417900:exon 40.0%
AAGGTTAAGCATGTCCTTTC+TGG + chr3_2:65236326-65236345 Msa0417900:CDS 40.0%
! CATGTCCTTTCTGGTGTTAA+AGG + chr3_2:65236335-65236354 Msa0417900:CDS 40.0%
ATTGTCGTCATGTGACTGAA+AGG + chr3_2:65236596-65236615 Msa0417900:intron 40.0%
ACTGCGTACAATACACCAAA+TGG + chr3_2:65236669-65236688 Msa0417900:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr3_2:65236673-65236692 Msa0417900:intron 40.0%
TTGAACAGGAGCTAAGAAAG+TGG + chr3_2:65236787-65236806 Msa0417900:intron 40.0%
TTGAACAGGAGCTAAGAAAG+TGG + chr3_2:65236787-65236806 Msa0417900:intron 40.0%
GCAGCTTTCAACACTTTCTT+TGG - chr3_2:65236991-65237010 None:intergenic 40.0%
TGCTCAATCCACAAAGAAGA+AGG + chr3_2:65237008-65237027 Msa0417900:CDS 40.0%
GCCTTATGTTCCATACACTA+TGG + chr3_2:65237041-65237060 Msa0417900:CDS 40.0%
!! AGGAGGTGCTTTCTTATCAT+AGG - chr3_2:65237091-65237110 None:intergenic 40.0%
GATTGTTAGGGTGGTTGAAA+TGG + chr3_2:65237446-65237465 Msa0417900:three_prime_UTR 40.0%
TGGTTGAAATGGAACACACT+TGG + chr3_2:65237457-65237476 Msa0417900:three_prime_UTR 40.0%
CTTGAACAAACTAGAGTGGT+CGG + chr3_2:65236064-65236083 Msa0417900:five_prime_UTR 40.0%
! AAGCAGAAAAATGGGAGTAC+AGG + chr3_2:65236193-65236212 Msa0417900:exon 40.0%
! AGCAGAAAAATGGGAGTACA+GGG + chr3_2:65236194-65236213 Msa0417900:exon 40.0%
AAGGTTAAGCATGTCCTTTC+TGG + chr3_2:65236326-65236345 Msa0417900:CDS 40.0%
! CATGTCCTTTCTGGTGTTAA+AGG + chr3_2:65236335-65236354 Msa0417900:CDS 40.0%
ATTGTCGTCATGTGACTGAA+AGG + chr3_2:65236596-65236615 Msa0417900:intron 40.0%
ACTGCGTACAATACACCAAA+TGG + chr3_2:65236669-65236688 Msa0417900:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr3_2:65236673-65236692 Msa0417900:intron 40.0%
TTGAACAGGAGCTAAGAAAG+TGG + chr3_2:65236787-65236806 Msa0417900:intron 40.0%
TTGAACAGGAGCTAAGAAAG+TGG + chr3_2:65236787-65236806 Msa0417900:intron 40.0%
GCAGCTTTCAACACTTTCTT+TGG - chr3_2:65236991-65237010 None:intergenic 40.0%
TGCTCAATCCACAAAGAAGA+AGG + chr3_2:65237008-65237027 Msa0417900:CDS 40.0%
GCCTTATGTTCCATACACTA+TGG + chr3_2:65237041-65237060 Msa0417900:CDS 40.0%
!! AGGAGGTGCTTTCTTATCAT+AGG - chr3_2:65237091-65237110 None:intergenic 40.0%
GATTGTTAGGGTGGTTGAAA+TGG + chr3_2:65237446-65237465 Msa0417900:three_prime_UTR 40.0%
TGGTTGAAATGGAACACACT+TGG + chr3_2:65237457-65237476 Msa0417900:three_prime_UTR 40.0%
AGCAAGCTAGCATCATTGTG+AGG + chr3_2:65236158-65236177 Msa0417900:five_prime_UTR 45.0%
! CAATTTTACCCGTTGCGACA+AGG - chr3_2:65236580-65236599 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG + chr3_2:65236672-65236691 Msa0417900:intron 45.0%
AGGAGCTAAGAAAGTGGATG+TGG + chr3_2:65236793-65236812 Msa0417900:intron 45.0%
CAGCAGAAAGTAACAGTGAG+TGG + chr3_2:65236824-65236843 Msa0417900:intron 45.0%
AGGAGCTAAGAAAGTGGATG+TGG + chr3_2:65236793-65236812 Msa0417900:intron 45.0%
CAGCAGAAAGTAACAGTGAG+TGG + chr3_2:65236824-65236843 Msa0417900:intron 45.0%
AAGCTCGACCTTCTTCTTTG+TGG - chr3_2:65237019-65237038 None:intergenic 45.0%
CAAAGAAGAAGGTCGAGCTT+TGG + chr3_2:65237019-65237038 Msa0417900:CDS 45.0%
AGCAAGCTAGCATCATTGTG+AGG + chr3_2:65236158-65236177 Msa0417900:five_prime_UTR 45.0%
! CAATTTTACCCGTTGCGACA+AGG - chr3_2:65236580-65236599 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG + chr3_2:65236672-65236691 Msa0417900:intron 45.0%
AGGAGCTAAGAAAGTGGATG+TGG + chr3_2:65236793-65236812 Msa0417900:intron 45.0%
CAGCAGAAAGTAACAGTGAG+TGG + chr3_2:65236824-65236843 Msa0417900:intron 45.0%
AGGAGCTAAGAAAGTGGATG+TGG + chr3_2:65236793-65236812 Msa0417900:intron 45.0%
CAGCAGAAAGTAACAGTGAG+TGG + chr3_2:65236824-65236843 Msa0417900:intron 45.0%
AAGCTCGACCTTCTTCTTTG+TGG - chr3_2:65237019-65237038 None:intergenic 45.0%
CAAAGAAGAAGGTCGAGCTT+TGG + chr3_2:65237019-65237038 Msa0417900:CDS 45.0%
CTGTGAAGGTTGTGCTCGCA+AGG + chr3_2:65236307-65236326 Msa0417900:CDS 55.0%
GAGGGGTAACCTTGTCGCAA+CGG + chr3_2:65236568-65236587 Msa0417900:intron 55.0%
AGGGGTAACCTTGTCGCAAC+GGG + chr3_2:65236569-65236588 Msa0417900:intron 55.0%
GCATACCCAAGGTTCGGGAA+GGG - chr3_2:65236701-65236720 None:intergenic 55.0%
CTTCCCGAACCTTGGGTATG+CGG + chr3_2:65236700-65236719 Msa0417900:intron 55.0%
TTCCCGAACCTTGGGTATGC+GGG + chr3_2:65236701-65236720 Msa0417900:intron 55.0%
CTAAAGCTCCCGCATACCCA+AGG - chr3_2:65236712-65236731 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+TGG + chr3_2:65236717-65236736 Msa0417900:intron 55.0%
! TGCGGGAGCTTTAGTGCACT+GGG + chr3_2:65236718-65236737 Msa0417900:intron 55.0%
GGGTGAGCCACCATAGTGTA+TGG - chr3_2:65237054-65237073 None:intergenic 55.0%
CTGTGAAGGTTGTGCTCGCA+AGG + chr3_2:65236307-65236326 Msa0417900:CDS 55.0%
GAGGGGTAACCTTGTCGCAA+CGG + chr3_2:65236568-65236587 Msa0417900:intron 55.0%
AGGGGTAACCTTGTCGCAAC+GGG + chr3_2:65236569-65236588 Msa0417900:intron 55.0%
GCATACCCAAGGTTCGGGAA+GGG - chr3_2:65236701-65236720 None:intergenic 55.0%
CTTCCCGAACCTTGGGTATG+CGG + chr3_2:65236700-65236719 Msa0417900:intron 55.0%
TTCCCGAACCTTGGGTATGC+GGG + chr3_2:65236701-65236720 Msa0417900:intron 55.0%
CTAAAGCTCCCGCATACCCA+AGG - chr3_2:65236712-65236731 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+TGG + chr3_2:65236717-65236736 Msa0417900:intron 55.0%
! TGCGGGAGCTTTAGTGCACT+GGG + chr3_2:65236718-65236737 Msa0417900:intron 55.0%
GGGTGAGCCACCATAGTGTA+TGG - chr3_2:65237054-65237073 None:intergenic 55.0%
CGGGAAGGGATCCCACCATT+TGG - chr3_2:65236687-65236706 None:intergenic 60.0%
TGGGATCCCTTCCCGAACCT+TGG + chr3_2:65236692-65236711 Msa0417900:intron 60.0%
GGGATCCCTTCCCGAACCTT+GGG + chr3_2:65236693-65236712 Msa0417900:intron 60.0%
CGCATACCCAAGGTTCGGGA+AGG - chr3_2:65236702-65236721 None:intergenic 60.0%
CTCCCGCATACCCAAGGTTC+GGG - chr3_2:65236706-65236725 None:intergenic 60.0%
GCTCCCGCATACCCAAGGTT+CGG - chr3_2:65236707-65236726 None:intergenic 60.0%
CGGGAAGGGATCCCACCATT+TGG - chr3_2:65236687-65236706 None:intergenic 60.0%
TGGGATCCCTTCCCGAACCT+TGG + chr3_2:65236692-65236711 Msa0417900:intron 60.0%
GGGATCCCTTCCCGAACCTT+GGG + chr3_2:65236693-65236712 Msa0417900:intron 60.0%
CGCATACCCAAGGTTCGGGA+AGG - chr3_2:65236702-65236721 None:intergenic 60.0%
CTCCCGCATACCCAAGGTTC+GGG - chr3_2:65236706-65236725 None:intergenic 60.0%
GCTCCCGCATACCCAAGGTT+CGG - chr3_2:65236707-65236726 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 65235953 65237480 65235953 ID=Msa0417900;Name=Msa0417900
chr3_2 mRNA 65235953 65237480 65235953 ID=Msa0417900-mRNA-1;Parent=Msa0417900;Name=Msa0417900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=250|0.5|0.66|1|1|1|3|259|165
chr3_2 exon 65235953 65236356 65235953 ID=Msa0417900-mRNA-1:exon:14662;Parent=Msa0417900-mRNA-1
chr3_2 exon 65236795 65236842 65236795 ID=Msa0417900-mRNA-1:exon:14663;Parent=Msa0417900-mRNA-1
chr3_2 exon 65236926 65237480 65236926 ID=Msa0417900-mRNA-1:exon:14664;Parent=Msa0417900-mRNA-1
chr3_2 five_prime_UTR 65235953 65236202 65235953 ID=Msa0417900-mRNA-1:five_prime_utr;Parent=Msa0417900-mRNA-1
chr3_2 CDS 65236203 65236356 65236203 ID=Msa0417900-mRNA-1:cds;Parent=Msa0417900-mRNA-1
chr3_2 CDS 65236795 65236842 65236795 ID=Msa0417900-mRNA-1:cds;Parent=Msa0417900-mRNA-1
chr3_2 CDS 65236926 65237221 65236926 ID=Msa0417900-mRNA-1:cds;Parent=Msa0417900-mRNA-1
chr3_2 three_prime_UTR 65237222 65237480 65237222 ID=Msa0417900-mRNA-1:three_prime_utr;Parent=Msa0417900-mRNA-1
Gene Sequence

>Msa0417900

ATGGGAGTACAGGGTACCCTAGAATACTTATCTGATTTACTCAGAAGCACAAAAAAGAAAAAGAAGAAGCAAACTCAAACTGTATCTCTTAAAATCAGAATGGACTGTGAAGGTTGTGCTCGCAAGGTTAAGCATGTCCTTTCTGGTGTTAAAGGAGCTAAGAAAGTGGATGTGGATTTGAAGCAGCAGAAAGTAACAGTGAGAGCTAAGAAAGTGGATGTGGATTTGAAGCAGCAGAAAGTAACAGTGAGTGGATATGTTGAACCAAAGAAAGTGTTGAAAGCTGCTCAATCCACAAAGAAGAAGGTCGAGCTTTGGCCTTATGTTCCATACACTATGGTGGCTCACCCTTATATTTCACAAGCCTATGATAAGAAAGCACCTCCTAATATGGTTAGAAAGGTTGCTGACACTTCCAACATAAAAGAGTCCACTTTTGATGATAGCTATGTTGAAATGTTCAGTGATGAAAATCCAAATGCTTGTTCTATTATGTAG
Protein sequence

>Msa0417900

MGVQGTLEYLSDLLRSTKKKKKKQTQTVSLKIRMDCEGCARKVKHVLSGVKGAKKVDVDLKQQKVTVRAKKVDVDLKQQKVTVSGYVEPKKVLKAAQSTKKKVELWPYVPYTMVAHPYISQAYDKKAPPNMVRKVADTSNIKESTFDDSYVEMFSDENPNACSIM*