AlfalfaGEDB | Msa0370400

M. sativa cultivar zhongmu-4 / Msa0370400

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771
PFAM: PF00403.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370400	XP_013460832.1	99.329	149	1	0	1	149	1	149	8.56e-104	303

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370400	sp\|O81464\|HIP24_ARATH	76.000	150	35	1	1	149	1	150	4.31e-80	236

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370400	I3SD34	99.329	149	1	0	1	149	1	149	4.09e-104	303

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0370400	Msa0417900	0.811542	6.646952e-51	-8.615850e-47
Msa0370400	Msa0464390	0.905152	5.804189e-80	-8.615850e-47
Msa0370400	Msa1398370	0.903664	2.746296e-79	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370400	MtrunA17_Chr3g0115421	99.329	149	1	0	1	149	1	149	7.87e-108	303
Msa0370400	MtrunA17_Chr8g0382721	62.745	153	53	2	1	149	1	153	2.58e-59	181
Msa0370400	MtrunA17_Chr3g0124411	60.390	154	54	3	1	149	1	152	1.72e-58	178
Msa0370400	MtrunA17_Chr4g0036931	51.613	155	65	3	5	149	2	156	2.91e-49	155
Msa0370400	MtrunA17_Chr1g0160201	51.020	147	69	2	5	149	2	147	7.50e-48	151
Msa0370400	MtrunA17_Chr3g0145621	47.436	156	75	2	1	149	1	156	9.58e-48	151
Msa0370400	MtrunA17_Chr5g0405811	48.077	156	70	3	5	149	2	157	3.29e-45	145
Msa0370400	MtrunA17_Chr5g0407821	46.897	145	76	1	5	149	2	145	1.59e-44	143
Msa0370400	MtrunA17_Chr6g0448861	44.805	154	76	3	5	149	2	155	4.73e-43	139
Msa0370400	MtrunA17_Chr7g0251491	43.537	147	79	3	5	149	26	170	6.88e-38	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370400	AT4G08570.1	76.000	150	35	1	1	149	1	150	4.39e-81	236
Msa0370400	AT4G39700.1	60.127	158	54	3	1	149	1	158	3.51e-57	176
Msa0370400	AT1G22990.1	55.921	152	59	3	5	149	2	152	6.52e-57	175
Msa0370400	AT1G22990.2	53.642	151	59	4	5	149	2	147	5.63e-53	164
Msa0370400	AT1G71050.1	51.974	152	70	3	1	149	1	152	2.51e-48	153
Msa0370400	AT4G38580.1	48.684	152	71	3	5	149	2	153	1.50e-45	146
Msa0370400	AT4G38580.2	48.684	152	71	3	5	149	2	153	1.50e-45	146
Msa0370400	AT5G66110.3	50.345	145	67	3	10	149	3	147	7.51e-45	144
Msa0370400	AT5G66110.1	50.345	145	67	3	10	149	3	147	7.51e-45	144
Msa0370400	AT5G66110.2	53.719	121	51	3	34	149	1	121	6.26e-40	130

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Find 47 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGAATGGACTGTGA+AGG	0.610949	3_1:+68088142	Msa0370400:CDS
AACATAGCTATCATCAAAAG+TGG	0.479724	3_1:-68088873	None:intergenic
AAGGTTAAGCATGTCCTTTC+TGG	0.256831	3_1:+68088175	Msa0370400:CDS
AAGTACCTTTAACACCAGAA+AGG	0.613905	3_1:-68088189	None:intergenic
AAGTGTATGGAAATATAGAA+AGG	0.553419	3_1:-68087840	None:intergenic
AATTGACTGATTGAAGTGTA+TGG	0.461832	3_1:-68087853	None:intergenic
ACCATAGTGTATGGAACATA+AGG	0.464116	3_1:-68088761	None:intergenic
ACCTCCTAATATGGTTAGAA+AGG	0.456268	3_1:+68088823	Msa0370400:CDS
ACCTTTCTAACCATATTAGG+AGG	0.574085	3_1:-68088824	None:intergenic
AGGAGCTAAGAAAGTGGATG+TGG	0.542853	3_1:+68088643	Msa0370400:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGACTGATTGAAGTGTA+TGG	-	chr3_1:68087856-68087875	None:intergenic	30.0%
AGCAAGAATAAGCAGAAAAA+TGG	+	chr3_1:68088033-68088052	Msa0370400:exon	30.0%
GCAAGAATAAGCAGAAAAAT+GGG	+	chr3_1:68088034-68088053	Msa0370400:exon	30.0%
GTAAATCAGACAAGTATTCT+AGG	-	chr3_1:68088072-68088091	None:intergenic	30.0%
AGCCTCTTGTGTAAAAAAAT+AGG	+	chr3_1:68088491-68088510	Msa0370400:intron	30.0%
GCCTCTTGTGTAAAAAAATA+GGG	+	chr3_1:68088492-68088511	Msa0370400:intron	30.0%
CATAGGCTTGTGAAATATAA+GGG	-	chr3_1:68088793-68088812	None:intergenic	30.0%
TCATAGGCTTGTGAAATATA+AGG	-	chr3_1:68088794-68088813	None:intergenic	30.0%
AACATAGCTATCATCAAAAG+TGG	-	chr3_1:68088876-68088895	None:intergenic	30.0%
TCAAAGTGTGATTACCATAA+GGG	-	chr3_1:68088975-68088994	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	68087826	68089199	68087826	ID=Msa0370400;Name=Msa0370400
chr3_1	mRNA	68087826	68089199	68087826	ID=Msa0370400-mRNA-1;Parent=Msa0370400;Name=Msa0370400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=226\|1\|1\|1\|1\|1\|2\|259\|149
chr3_1	exon	68087826	68088205	68087826	ID=Msa0370400-mRNA-1:exon:14151;Parent=Msa0370400-mRNA-1
chr3_1	exon	68088645	68089199	68088645	ID=Msa0370400-mRNA-1:exon:14152;Parent=Msa0370400-mRNA-1
chr3_1	five_prime_UTR	68087826	68088051	68087826	ID=Msa0370400-mRNA-1:five_prime_utr;Parent=Msa0370400-mRNA-1
chr3_1	CDS	68088052	68088205	68088052	ID=Msa0370400-mRNA-1:cds;Parent=Msa0370400-mRNA-1
chr3_1	CDS	68088645	68088940	68088645	ID=Msa0370400-mRNA-1:cds;Parent=Msa0370400-mRNA-1
chr3_1	three_prime_UTR	68088941	68089199	68088941	ID=Msa0370400-mRNA-1:three_prime_utr;Parent=Msa0370400-mRNA-1

Gene Sequence

>Msa0370400

ATGGGAGTACAGGGTACCCTAGAATACTTGTCTGATTTACTCAGTAGCACAAAAAAGAAAAAGAAGAAGCAAACTCAAACTGTATCTCTTAAAATCAGAATGGACTGTGAAGGTTGTGCTCGCAAGGTTAAGCATGTCCTTTCTGGTGTTAAAGGAGCTAAGAAAGTGGATGTGGACTTGAAGCAGCAGAAAGTAACAGTGAGTGGATATGTTGAACCAAAGAAAGTGTTGAAAGCTGCTCAATCAACAAAGAAGAAGGTCGAGCTTTGGCCTTATGTTCCATACACTATGGTGGCTCACCCTTATATTTCACAAGCCTATGATAAGAAAGCACCTCCTAATATGGTTAGAAAGGTTGCTGACACTTCCAACATAAAAGAGTCCACTTTTGATGATAGCTATGTTGAAATGTTCAGTGATGAAAATCCAAATGCTTGTTCTATTATGTAG

Protein sequence

>Msa0370400

MGVQGTLEYLSDLLSSTKKKKKKQTQTVSLKIRMDCEGCARKVKHVLSGVKGAKKVDVDLKQQKVTVSGYVEPKKVLKAAQSTKKKVELWPYVPYTMVAHPYISQAYDKKAPPNMVRKVADTSNIKESTFDDSYVEMFSDENPNACSIM*