AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0370400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370400 MtrunA17_Chr3g0115421 99.329 149 1 0 1 149 1 149 7.87e-108 303
Msa0370400 MtrunA17_Chr8g0382721 62.745 153 53 2 1 149 1 153 2.58e-59 181
Msa0370400 MtrunA17_Chr3g0124411 60.390 154 54 3 1 149 1 152 1.72e-58 178
Msa0370400 MtrunA17_Chr4g0036931 51.613 155 65 3 5 149 2 156 2.91e-49 155
Msa0370400 MtrunA17_Chr1g0160201 51.020 147 69 2 5 149 2 147 7.50e-48 151
Msa0370400 MtrunA17_Chr3g0145621 47.436 156 75 2 1 149 1 156 9.58e-48 151
Msa0370400 MtrunA17_Chr5g0405811 48.077 156 70 3 5 149 2 157 3.29e-45 145
Msa0370400 MtrunA17_Chr5g0407821 46.897 145 76 1 5 149 2 145 1.59e-44 143
Msa0370400 MtrunA17_Chr6g0448861 44.805 154 76 3 5 149 2 155 4.73e-43 139
Msa0370400 MtrunA17_Chr7g0251491 43.537 147 79 3 5 149 26 170 6.88e-38 127
Msa0370400 MtrunA17_Chr5g0422891 38.095 147 88 2 5 149 2 147 1.25e-32 112
Msa0370400 MtrunA17_Chr2g0325601 33.333 138 73 3 30 149 6 142 8.99e-20 79.7
Msa0370400 MtrunA17_Chr1g0189221 48.148 81 38 1 26 102 53 133 2.76e-19 79.7
Msa0370400 MtrunA17_Chr6g0471231 38.168 131 66 4 33 149 11 140 7.58e-19 77.4
Msa0370400 MtrunA17_Chr1g0198341 50.000 66 33 0 25 90 3 68 6.72e-16 68.2
Msa0370400 MtrunA17_Chr7g0218981 43.939 66 37 0 25 90 3 68 3.36e-15 67.8
Msa0370400 MtrunA17_Chr6g0460361 37.963 108 56 4 52 149 4 110 5.44e-14 63.9
Msa0370400 MtrunA17_Chr7g0272571 43.077 65 37 0 27 91 34 98 6.72e-13 64.7
Msa0370400 MtrunA17_Chr1g0192131 39.744 78 46 1 15 91 4 81 9.60e-13 64.3
Msa0370400 MtrunA17_Chr7g0269081 40.000 65 39 0 26 90 22 86 1.29e-12 63.5
Msa0370400 MtrunA17_Chr1g0191671 44.615 65 36 0 26 90 10 74 2.00e-12 63.5
Msa0370400 MtrunA17_Chr1g0208301 43.077 65 37 0 26 90 13 77 2.41e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370400 AT4G08570.1 76.000 150 35 1 1 149 1 150 4.39e-81 236
Msa0370400 AT4G39700.1 60.127 158 54 3 1 149 1 158 3.51e-57 176
Msa0370400 AT1G22990.1 55.921 152 59 3 5 149 2 152 6.52e-57 175
Msa0370400 AT1G22990.2 53.642 151 59 4 5 149 2 147 5.63e-53 164
Msa0370400 AT1G71050.1 51.974 152 70 3 1 149 1 152 2.51e-48 153
Msa0370400 AT4G38580.1 48.684 152 71 3 5 149 2 153 1.50e-45 146
Msa0370400 AT4G38580.2 48.684 152 71 3 5 149 2 153 1.50e-45 146
Msa0370400 AT5G66110.3 50.345 145 67 3 10 149 3 147 7.51e-45 144
Msa0370400 AT5G66110.1 50.345 145 67 3 10 149 3 147 7.51e-45 144
Msa0370400 AT5G66110.2 53.719 121 51 3 34 149 1 121 6.26e-40 130
Msa0370400 AT4G35060.1 41.447 152 82 3 5 149 2 153 3.72e-38 127
Msa0370400 AT5G17450.1 44.737 152 73 4 5 149 2 149 1.34e-36 123
Msa0370400 AT5G17450.2 46.078 102 47 3 52 149 8 105 2.60e-24 90.9
Msa0370400 AT2G18196.1 37.594 133 74 3 26 149 46 178 1.02e-23 91.3
Msa0370400 AT1G06330.1 35.135 148 71 3 27 149 3 150 2.65e-22 87.0
Msa0370400 AT2G18196.2 36.000 125 71 3 34 149 1 125 6.82e-20 80.1
Msa0370400 AT4G10465.1 35.000 140 82 3 19 149 44 183 4.10e-19 79.7
Msa0370400 AT3G56891.1 31.333 150 74 4 28 149 18 166 2.24e-18 77.4
Msa0370400 AT1G29100.2 34.014 147 74 4 25 149 2 147 6.94e-18 75.5
Msa0370400 AT3G56891.2 31.250 144 70 4 34 149 1 143 2.10e-17 74.3
Msa0370400 AT1G29100.1 33.803 142 71 4 30 149 1 141 8.03e-17 72.4
Msa0370400 AT1G66240.1 47.826 69 36 0 22 90 29 97 5.08e-16 69.7
Msa0370400 AT3G56240.3 46.970 66 35 0 26 91 3 68 2.86e-15 68.2
Msa0370400 AT3G56240.1 46.970 66 35 0 26 91 3 68 2.86e-15 68.2
Msa0370400 AT5G27690.1 45.161 62 34 0 30 91 34 95 7.73e-14 67.8
Msa0370400 AT1G56210.1 43.478 69 39 0 26 94 40 108 1.71e-13 66.6
Msa0370400 AT3G48970.1 36.879 141 71 6 25 149 2 140 3.69e-13 63.2
Msa0370400 AT3G48970.2 37.410 139 69 6 27 149 2 138 5.12e-13 62.8
Msa0370400 AT3G48970.3 37.410 139 69 6 27 149 2 138 5.12e-13 62.8
Msa0370400 AT1G66240.2 49.123 57 29 0 34 90 1 57 2.30e-12 58.9
Msa0370400 AT3G56240.2 44.828 58 32 0 34 91 1 58 4.61e-12 59.3

Find 47 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTAATTTCTCACCCCTTA+TGG 0.244698 3_1:+68088958 Msa0370400:three_prime_UTR
AAGGTTAAGCATGTCCTTTC+TGG 0.256831 3_1:+68088175 Msa0370400:CDS
GCAACCTTTCTAACCATATT+AGG 0.261201 3_1:-68088827 None:intergenic
CATGTCCTTTCTGGTGTTAA+AGG 0.262150 3_1:+68088184 Msa0370400:CDS
TCATAGGCTTGTGAAATATA+AGG 0.273413 3_1:-68088791 None:intergenic
GATAATGATGATTGATTGTT+AGG 0.273640 3_1:+68089152 Msa0370400:three_prime_UTR
GCAGCTTTCAACACTTTCTT+TGG 0.279745 3_1:-68088707 None:intergenic
GTAAATCAGACAAGTATTCT+AGG 0.300083 3_1:-68088069 None:intergenic
TGAGGAGAAAATAATGTAAT+AGG 0.320083 3_1:+68088992 Msa0370400:three_prime_UTR
CAAGTATGAGAACAAAATTA+TGG 0.356872 3_1:-68087892 None:intergenic
TAAGAAAGCACCTCCTAATA+TGG 0.356938 3_1:+68088814 Msa0370400:CDS
GCCTTATGTTCCATACACTA+TGG 0.372587 3_1:+68088760 Msa0370400:CDS
AGGAGGTGCTTTCTTATCAT+AGG 0.375360 3_1:-68088807 None:intergenic
TACATAATAGAACAAGCATT+TGG 0.390614 3_1:-68088917 None:intergenic
GATTGTTAGGGTGGTTGAAA+TGG 0.420007 3_1:+68089165 Msa0370400:three_prime_UTR
TCAAAGTGTGATTACCATAA+GGG 0.421588 3_1:-68088972 None:intergenic
CTCAAAGTGTGATTACCATA+AGG 0.439579 3_1:-68088973 None:intergenic
GAGATAGAGATATGTGATAG+AGG 0.442292 3_1:+68089033 Msa0370400:three_prime_UTR
CATAGGCTTGTGAAATATAA+GGG 0.443566 3_1:-68088790 None:intergenic
ACCTCCTAATATGGTTAGAA+AGG 0.456268 3_1:+68088823 Msa0370400:CDS
AATTGACTGATTGAAGTGTA+TGG 0.461832 3_1:-68087853 None:intergenic
ACCATAGTGTATGGAACATA+AGG 0.464116 3_1:-68088761 None:intergenic
CAAAGAAGAAGGTCGAGCTT+TGG 0.466636 3_1:+68088738 Msa0370400:CDS
AACATAGCTATCATCAAAAG+TGG 0.479724 3_1:-68088873 None:intergenic
GGGTGAGCCACCATAGTGTA+TGG 0.494549 3_1:-68088770 None:intergenic
CTTATGGTAATCACACTTTG+AGG 0.514753 3_1:+68088974 Msa0370400:three_prime_UTR
TGTATCTCTTAAAATCAGAA+TGG 0.514900 3_1:+68088132 Msa0370400:CDS
TGCTCAATCAACAAAGAAGA+AGG 0.535682 3_1:+68088727 Msa0370400:CDS
ATAATGATGATTGATTGTTA+GGG 0.541805 3_1:+68089153 Msa0370400:three_prime_UTR
AGGAGCTAAGAAAGTGGATG+TGG 0.542853 3_1:+68088643 Msa0370400:intron
AAGTGTATGGAAATATAGAA+AGG 0.553419 3_1:-68087840 None:intergenic
TAAATCAGACAAGTATTCTA+GGG 0.567273 3_1:-68088068 None:intergenic
CTGTGAAGGTTGTGCTCGCA+AGG 0.570301 3_1:+68088156 Msa0370400:CDS
ATGATGATTGATTGTTAGGG+TGG 0.571522 3_1:+68089156 Msa0370400:three_prime_UTR
ACCTTTCTAACCATATTAGG+AGG 0.574085 3_1:-68088824 None:intergenic
CAGCAGAAAGTAACAGTGAG+TGG 0.576096 3_1:+68088674 Msa0370400:CDS
TTGAACAGGAGCTAAGAAAG+TGG 0.579198 3_1:+68088637 Msa0370400:intron
CAAAGTGTGATTACCATAAG+GGG 0.600902 3_1:-68088971 None:intergenic
CTTGAACAAACTAGAGTGGT+CGG 0.607671 3_1:+68087911 Msa0370400:five_prime_UTR
AAAATCAGAATGGACTGTGA+AGG 0.610949 3_1:+68088142 Msa0370400:CDS
TTATGTTCCATACACTATGG+TGG 0.612160 3_1:+68088763 Msa0370400:CDS
AAGTACCTTTAACACCAGAA+AGG 0.613905 3_1:-68088189 None:intergenic
ATTCAAGAAATAAACTACGT+TGG 0.626370 3_1:-68087978 None:intergenic
ATGTCTATATATATAAACAA+AGG 0.631854 3_1:+68087955 Msa0370400:five_prime_UTR
CATACTTGAACAAACTAGAG+TGG 0.652576 3_1:+68087907 Msa0370400:five_prime_UTR
TGGTTGAAATGGAACACACT+TGG 0.653186 3_1:+68089176 Msa0370400:three_prime_UTR
AGTAAGCTAGAATCATTGTG+AGG 0.719657 3_1:+68088007 Msa0370400:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTCTATATATATAAACAA+AGG + chr3_1:68087955-68087974 Msa0370400:five_prime_UTR 15.0%
!!! TAATGCATAATTTTAAATTG+TGG - chr3_1:68088380-68088399 None:intergenic 15.0%
!!! ATTGTTTTTAGTTCATTTAT+TGG + chr3_1:68088599-68088618 Msa0370400:intron 15.0%
!!! AATTAATTTGAAATTTGAAC+AGG + chr3_1:68088623-68088642 Msa0370400:intron 15.0%
!!! GATAATAATATAATTTTGCA+TGG + chr3_1:68089109-68089128 Msa0370400:three_prime_UTR 15.0%
!! ATGTCTATATATATAAACAA+AGG + chr3_1:68087955-68087974 Msa0370400:five_prime_UTR 15.0%
!!! TAATGCATAATTTTAAATTG+TGG - chr3_1:68088380-68088399 None:intergenic 15.0%
!!! ATTGTTTTTAGTTCATTTAT+TGG + chr3_1:68088599-68088618 Msa0370400:intron 15.0%
!!! AATTAATTTGAAATTTGAAC+AGG + chr3_1:68088623-68088642 Msa0370400:intron 15.0%
!!! GATAATAATATAATTTTGCA+TGG + chr3_1:68089109-68089128 Msa0370400:three_prime_UTR 15.0%
!!! TATTGTTTTTAGTTCATTTG+AGG + chr3_1:68088398-68088417 Msa0370400:intron 20.0%
!!! ATTGTTTTTAGTTCATTTGA+GGG + chr3_1:68088399-68088418 Msa0370400:intron 20.0%
!! ATAATGATGATTGATTGTTA+GGG + chr3_1:68089153-68089172 Msa0370400:three_prime_UTR 20.0%
!!! TATTGTTTTTAGTTCATTTG+AGG + chr3_1:68088398-68088417 Msa0370400:intron 20.0%
!!! ATTGTTTTTAGTTCATTTGA+GGG + chr3_1:68088399-68088418 Msa0370400:intron 20.0%
!! ATAATGATGATTGATTGTTA+GGG + chr3_1:68089153-68089172 Msa0370400:three_prime_UTR 20.0%
! AAGTGTATGGAAATATAGAA+AGG - chr3_1:68087843-68087862 None:intergenic 25.0%
! CAAGTATGAGAACAAAATTA+TGG - chr3_1:68087895-68087914 None:intergenic 25.0%
! ATTCAAGAAATAAACTACGT+TGG - chr3_1:68087981-68088000 None:intergenic 25.0%
! TAAATCAGACAAGTATTCTA+GGG - chr3_1:68088071-68088090 None:intergenic 25.0%
! TGTATCTCTTAAAATCAGAA+TGG + chr3_1:68088132-68088151 Msa0370400:CDS 25.0%
!!! TTGTTTTTAGTTCATTTGAG+GGG + chr3_1:68088400-68088419 Msa0370400:intron 25.0%
! TTGTGTAAAAAAATAGGGTA+AGG + chr3_1:68088497-68088516 Msa0370400:intron 25.0%
! TACATAATAGAACAAGCATT+TGG - chr3_1:68088920-68088939 None:intergenic 25.0%
! TGAGGAGAAAATAATGTAAT+AGG + chr3_1:68088992-68089011 Msa0370400:three_prime_UTR 25.0%
! GATAATGATGATTGATTGTT+AGG + chr3_1:68089152-68089171 Msa0370400:three_prime_UTR 25.0%
! AAGTGTATGGAAATATAGAA+AGG - chr3_1:68087843-68087862 None:intergenic 25.0%
! CAAGTATGAGAACAAAATTA+TGG - chr3_1:68087895-68087914 None:intergenic 25.0%
! ATTCAAGAAATAAACTACGT+TGG - chr3_1:68087981-68088000 None:intergenic 25.0%
! TAAATCAGACAAGTATTCTA+GGG - chr3_1:68088071-68088090 None:intergenic 25.0%
! TGTATCTCTTAAAATCAGAA+TGG + chr3_1:68088132-68088151 Msa0370400:CDS 25.0%
!!! TTGTTTTTAGTTCATTTGAG+GGG + chr3_1:68088400-68088419 Msa0370400:intron 25.0%
! TTGTGTAAAAAAATAGGGTA+AGG + chr3_1:68088497-68088516 Msa0370400:intron 25.0%
! TACATAATAGAACAAGCATT+TGG - chr3_1:68088920-68088939 None:intergenic 25.0%
! TGAGGAGAAAATAATGTAAT+AGG + chr3_1:68088992-68089011 Msa0370400:three_prime_UTR 25.0%
! GATAATGATGATTGATTGTT+AGG + chr3_1:68089152-68089171 Msa0370400:three_prime_UTR 25.0%
AATTGACTGATTGAAGTGTA+TGG - chr3_1:68087856-68087875 None:intergenic 30.0%
AGCAAGAATAAGCAGAAAAA+TGG + chr3_1:68088033-68088052 Msa0370400:exon 30.0%
GCAAGAATAAGCAGAAAAAT+GGG + chr3_1:68088034-68088053 Msa0370400:exon 30.0%
GTAAATCAGACAAGTATTCT+AGG - chr3_1:68088072-68088091 None:intergenic 30.0%
! AAACGAGGCAATGATTTTTA+AGG - chr3_1:68088245-68088264 None:intergenic 30.0%
!! CATTGCCTCGTTTTAAATTA+CGG + chr3_1:68088252-68088271 Msa0370400:intron 30.0%
! ACTTTTATATTGCGCAATTG+TGG + chr3_1:68088347-68088366 Msa0370400:intron 30.0%
AGCCTCTTGTGTAAAAAAAT+AGG + chr3_1:68088491-68088510 Msa0370400:intron 30.0%
GCCTCTTGTGTAAAAAAATA+GGG + chr3_1:68088492-68088511 Msa0370400:intron 30.0%
!!! ACCCTATTTTTTTACACAAG+AGG - chr3_1:68088496-68088515 None:intergenic 30.0%
CATAGGCTTGTGAAATATAA+GGG - chr3_1:68088793-68088812 None:intergenic 30.0%
TCATAGGCTTGTGAAATATA+AGG - chr3_1:68088794-68088813 None:intergenic 30.0%
!! AAAAGTGGACTCTTTTATGT+TGG - chr3_1:68088861-68088880 None:intergenic 30.0%
AACATAGCTATCATCAAAAG+TGG - chr3_1:68088876-68088895 None:intergenic 30.0%
TCAAAGTGTGATTACCATAA+GGG - chr3_1:68088975-68088994 None:intergenic 30.0%
AATTGACTGATTGAAGTGTA+TGG - chr3_1:68087856-68087875 None:intergenic 30.0%
AGCAAGAATAAGCAGAAAAA+TGG + chr3_1:68088033-68088052 Msa0370400:exon 30.0%
GCAAGAATAAGCAGAAAAAT+GGG + chr3_1:68088034-68088053 Msa0370400:exon 30.0%
GTAAATCAGACAAGTATTCT+AGG - chr3_1:68088072-68088091 None:intergenic 30.0%
! AAACGAGGCAATGATTTTTA+AGG - chr3_1:68088245-68088264 None:intergenic 30.0%
!! CATTGCCTCGTTTTAAATTA+CGG + chr3_1:68088252-68088271 Msa0370400:intron 30.0%
! ACTTTTATATTGCGCAATTG+TGG + chr3_1:68088347-68088366 Msa0370400:intron 30.0%
AGCCTCTTGTGTAAAAAAAT+AGG + chr3_1:68088491-68088510 Msa0370400:intron 30.0%
GCCTCTTGTGTAAAAAAATA+GGG + chr3_1:68088492-68088511 Msa0370400:intron 30.0%
!!! ACCCTATTTTTTTACACAAG+AGG - chr3_1:68088496-68088515 None:intergenic 30.0%
CATAGGCTTGTGAAATATAA+GGG - chr3_1:68088793-68088812 None:intergenic 30.0%
TCATAGGCTTGTGAAATATA+AGG - chr3_1:68088794-68088813 None:intergenic 30.0%
!! AAAAGTGGACTCTTTTATGT+TGG - chr3_1:68088861-68088880 None:intergenic 30.0%
AACATAGCTATCATCAAAAG+TGG - chr3_1:68088876-68088895 None:intergenic 30.0%
TCAAAGTGTGATTACCATAA+GGG - chr3_1:68088975-68088994 None:intergenic 30.0%
CATACTTGAACAAACTAGAG+TGG + chr3_1:68087907-68087926 Msa0370400:five_prime_UTR 35.0%
AGTAAGCTAGAATCATTGTG+AGG + chr3_1:68088007-68088026 Msa0370400:five_prime_UTR 35.0%
!! AAAATCAGAATGGACTGTGA+AGG + chr3_1:68088142-68088161 Msa0370400:CDS 35.0%
AAGTACCTTTAACACCAGAA+AGG - chr3_1:68088192-68088211 None:intergenic 35.0%
! TGCAACCGTAATTTAAAACG+AGG - chr3_1:68088260-68088279 None:intergenic 35.0%
!!! CTACAGCAGTCGATATTTTT+TGG - chr3_1:68088316-68088335 None:intergenic 35.0%
TGCTCAATCAACAAAGAAGA+AGG + chr3_1:68088727-68088746 Msa0370400:CDS 35.0%
ACCATAGTGTATGGAACATA+AGG - chr3_1:68088764-68088783 None:intergenic 35.0%
TTATGTTCCATACACTATGG+TGG + chr3_1:68088763-68088782 Msa0370400:CDS 35.0%
!! TAAGAAAGCACCTCCTAATA+TGG + chr3_1:68088814-68088833 Msa0370400:CDS 35.0%
ACCTCCTAATATGGTTAGAA+AGG + chr3_1:68088823-68088842 Msa0370400:CDS 35.0%
ACCTTTCTAACCATATTAGG+AGG - chr3_1:68088827-68088846 None:intergenic 35.0%
GCAACCTTTCTAACCATATT+AGG - chr3_1:68088830-68088849 None:intergenic 35.0%
GATTAATTTCTCACCCCTTA+TGG + chr3_1:68088958-68088977 Msa0370400:three_prime_UTR 35.0%
CAAAGTGTGATTACCATAAG+GGG - chr3_1:68088974-68088993 None:intergenic 35.0%
CTCAAAGTGTGATTACCATA+AGG - chr3_1:68088976-68088995 None:intergenic 35.0%
CTTATGGTAATCACACTTTG+AGG + chr3_1:68088974-68088993 Msa0370400:three_prime_UTR 35.0%
GAGATAGAGATATGTGATAG+AGG + chr3_1:68089033-68089052 Msa0370400:three_prime_UTR 35.0%
ATGATGATTGATTGTTAGGG+TGG + chr3_1:68089156-68089175 Msa0370400:three_prime_UTR 35.0%
CATACTTGAACAAACTAGAG+TGG + chr3_1:68087907-68087926 Msa0370400:five_prime_UTR 35.0%
AGTAAGCTAGAATCATTGTG+AGG + chr3_1:68088007-68088026 Msa0370400:five_prime_UTR 35.0%
!! AAAATCAGAATGGACTGTGA+AGG + chr3_1:68088142-68088161 Msa0370400:CDS 35.0%
AAGTACCTTTAACACCAGAA+AGG - chr3_1:68088192-68088211 None:intergenic 35.0%
! TGCAACCGTAATTTAAAACG+AGG - chr3_1:68088260-68088279 None:intergenic 35.0%
!!! CTACAGCAGTCGATATTTTT+TGG - chr3_1:68088316-68088335 None:intergenic 35.0%
TGCTCAATCAACAAAGAAGA+AGG + chr3_1:68088727-68088746 Msa0370400:CDS 35.0%
ACCATAGTGTATGGAACATA+AGG - chr3_1:68088764-68088783 None:intergenic 35.0%
TTATGTTCCATACACTATGG+TGG + chr3_1:68088763-68088782 Msa0370400:CDS 35.0%
!! TAAGAAAGCACCTCCTAATA+TGG + chr3_1:68088814-68088833 Msa0370400:CDS 35.0%
ACCTCCTAATATGGTTAGAA+AGG + chr3_1:68088823-68088842 Msa0370400:CDS 35.0%
ACCTTTCTAACCATATTAGG+AGG - chr3_1:68088827-68088846 None:intergenic 35.0%
GCAACCTTTCTAACCATATT+AGG - chr3_1:68088830-68088849 None:intergenic 35.0%
GATTAATTTCTCACCCCTTA+TGG + chr3_1:68088958-68088977 Msa0370400:three_prime_UTR 35.0%
CAAAGTGTGATTACCATAAG+GGG - chr3_1:68088974-68088993 None:intergenic 35.0%
CTCAAAGTGTGATTACCATA+AGG - chr3_1:68088976-68088995 None:intergenic 35.0%
CTTATGGTAATCACACTTTG+AGG + chr3_1:68088974-68088993 Msa0370400:three_prime_UTR 35.0%
GAGATAGAGATATGTGATAG+AGG + chr3_1:68089033-68089052 Msa0370400:three_prime_UTR 35.0%
ATGATGATTGATTGTTAGGG+TGG + chr3_1:68089156-68089175 Msa0370400:three_prime_UTR 35.0%
CTTGAACAAACTAGAGTGGT+CGG + chr3_1:68087911-68087930 Msa0370400:five_prime_UTR 40.0%
! AAGCAGAAAAATGGGAGTAC+AGG + chr3_1:68088042-68088061 Msa0370400:exon 40.0%
! AGCAGAAAAATGGGAGTACA+GGG + chr3_1:68088043-68088062 Msa0370400:exon 40.0%
AAGGTTAAGCATGTCCTTTC+TGG + chr3_1:68088175-68088194 Msa0370400:CDS 40.0%
! CATGTCCTTTCTGGTGTTAA+AGG + chr3_1:68088184-68088203 Msa0370400:CDS 40.0%
ATTGTCGTCATGTGACTGAA+AGG + chr3_1:68088445-68088464 Msa0370400:intron 40.0%
TTACACAAGAGGCTGTTTAC+AGG - chr3_1:68088485-68088504 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG + chr3_1:68088523-68088542 Msa0370400:intron 40.0%
TTGAACAGGAGCTAAGAAAG+TGG + chr3_1:68088637-68088656 Msa0370400:intron 40.0%
GCAGCTTTCAACACTTTCTT+TGG - chr3_1:68088710-68088729 None:intergenic 40.0%
GCCTTATGTTCCATACACTA+TGG + chr3_1:68088760-68088779 Msa0370400:CDS 40.0%
!! AGGAGGTGCTTTCTTATCAT+AGG - chr3_1:68088810-68088829 None:intergenic 40.0%
GATTGTTAGGGTGGTTGAAA+TGG + chr3_1:68089165-68089184 Msa0370400:three_prime_UTR 40.0%
TGGTTGAAATGGAACACACT+TGG + chr3_1:68089176-68089195 Msa0370400:three_prime_UTR 40.0%
CTTGAACAAACTAGAGTGGT+CGG + chr3_1:68087911-68087930 Msa0370400:five_prime_UTR 40.0%
! AAGCAGAAAAATGGGAGTAC+AGG + chr3_1:68088042-68088061 Msa0370400:exon 40.0%
! AGCAGAAAAATGGGAGTACA+GGG + chr3_1:68088043-68088062 Msa0370400:exon 40.0%
AAGGTTAAGCATGTCCTTTC+TGG + chr3_1:68088175-68088194 Msa0370400:CDS 40.0%
! CATGTCCTTTCTGGTGTTAA+AGG + chr3_1:68088184-68088203 Msa0370400:CDS 40.0%
ATTGTCGTCATGTGACTGAA+AGG + chr3_1:68088445-68088464 Msa0370400:intron 40.0%
TTACACAAGAGGCTGTTTAC+AGG - chr3_1:68088485-68088504 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG + chr3_1:68088523-68088542 Msa0370400:intron 40.0%
TTGAACAGGAGCTAAGAAAG+TGG + chr3_1:68088637-68088656 Msa0370400:intron 40.0%
GCAGCTTTCAACACTTTCTT+TGG - chr3_1:68088710-68088729 None:intergenic 40.0%
GCCTTATGTTCCATACACTA+TGG + chr3_1:68088760-68088779 Msa0370400:CDS 40.0%
!! AGGAGGTGCTTTCTTATCAT+AGG - chr3_1:68088810-68088829 None:intergenic 40.0%
GATTGTTAGGGTGGTTGAAA+TGG + chr3_1:68089165-68089184 Msa0370400:three_prime_UTR 40.0%
TGGTTGAAATGGAACACACT+TGG + chr3_1:68089176-68089195 Msa0370400:three_prime_UTR 40.0%
! CAATTTTACCCGTTGCGACA+AGG - chr3_1:68088429-68088448 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr3_1:68088519-68088538 Msa0370400:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr3_1:68088522-68088541 Msa0370400:intron 45.0%
AGGAGCTAAGAAAGTGGATG+TGG + chr3_1:68088643-68088662 Msa0370400:intron 45.0%
CAGCAGAAAGTAACAGTGAG+TGG + chr3_1:68088674-68088693 Msa0370400:CDS 45.0%
CAAAGAAGAAGGTCGAGCTT+TGG + chr3_1:68088738-68088757 Msa0370400:CDS 45.0%
! CAATTTTACCCGTTGCGACA+AGG - chr3_1:68088429-68088448 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr3_1:68088519-68088538 Msa0370400:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr3_1:68088522-68088541 Msa0370400:intron 45.0%
AGGAGCTAAGAAAGTGGATG+TGG + chr3_1:68088643-68088662 Msa0370400:intron 45.0%
CAGCAGAAAGTAACAGTGAG+TGG + chr3_1:68088674-68088693 Msa0370400:CDS 45.0%
CAAAGAAGAAGGTCGAGCTT+TGG + chr3_1:68088738-68088757 Msa0370400:CDS 45.0%
CTGTGAAGGTTGTGCTCGCA+AGG + chr3_1:68088156-68088175 Msa0370400:CDS 55.0%
GAGGGGTAACCTTGTCGCAA+CGG + chr3_1:68088417-68088436 Msa0370400:intron 55.0%
AGGGGTAACCTTGTCGCAAC+GGG + chr3_1:68088418-68088437 Msa0370400:intron 55.0%
GCATACGCAAGGTTCGGGAA+GGG - chr3_1:68088551-68088570 None:intergenic 55.0%
CTTCCCGAACCTTGCGTATG+CGG + chr3_1:68088550-68088569 Msa0370400:intron 55.0%
TTCCCGAACCTTGCGTATGC+GGG + chr3_1:68088551-68088570 Msa0370400:intron 55.0%
CTAAAGCTCCCGCATACGCA+AGG - chr3_1:68088562-68088581 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+TGG + chr3_1:68088567-68088586 Msa0370400:intron 55.0%
! TGCGGGAGCTTTAGTGCACT+GGG + chr3_1:68088568-68088587 Msa0370400:intron 55.0%
GGGTGAGCCACCATAGTGTA+TGG - chr3_1:68088773-68088792 None:intergenic 55.0%
CTGTGAAGGTTGTGCTCGCA+AGG + chr3_1:68088156-68088175 Msa0370400:CDS 55.0%
GAGGGGTAACCTTGTCGCAA+CGG + chr3_1:68088417-68088436 Msa0370400:intron 55.0%
AGGGGTAACCTTGTCGCAAC+GGG + chr3_1:68088418-68088437 Msa0370400:intron 55.0%
GCATACGCAAGGTTCGGGAA+GGG - chr3_1:68088551-68088570 None:intergenic 55.0%
CTTCCCGAACCTTGCGTATG+CGG + chr3_1:68088550-68088569 Msa0370400:intron 55.0%
TTCCCGAACCTTGCGTATGC+GGG + chr3_1:68088551-68088570 Msa0370400:intron 55.0%
CTAAAGCTCCCGCATACGCA+AGG - chr3_1:68088562-68088581 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+TGG + chr3_1:68088567-68088586 Msa0370400:intron 55.0%
! TGCGGGAGCTTTAGTGCACT+GGG + chr3_1:68088568-68088587 Msa0370400:intron 55.0%
GGGTGAGCCACCATAGTGTA+TGG - chr3_1:68088773-68088792 None:intergenic 55.0%
CGGGAAGGGTTCCCACCATT+TGG - chr3_1:68088537-68088556 None:intergenic 60.0%
CGCATACGCAAGGTTCGGGA+AGG - chr3_1:68088552-68088571 None:intergenic 60.0%
CTCCCGCATACGCAAGGTTC+GGG - chr3_1:68088556-68088575 None:intergenic 60.0%
GCTCCCGCATACGCAAGGTT+CGG - chr3_1:68088557-68088576 None:intergenic 60.0%
CGGGAAGGGTTCCCACCATT+TGG - chr3_1:68088537-68088556 None:intergenic 60.0%
CGCATACGCAAGGTTCGGGA+AGG - chr3_1:68088552-68088571 None:intergenic 60.0%
CTCCCGCATACGCAAGGTTC+GGG - chr3_1:68088556-68088575 None:intergenic 60.0%
GCTCCCGCATACGCAAGGTT+CGG - chr3_1:68088557-68088576 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 68087826 68089199 68087826 ID=Msa0370400;Name=Msa0370400
chr3_1 mRNA 68087826 68089199 68087826 ID=Msa0370400-mRNA-1;Parent=Msa0370400;Name=Msa0370400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=226|1|1|1|1|1|2|259|149
chr3_1 exon 68087826 68088205 68087826 ID=Msa0370400-mRNA-1:exon:14151;Parent=Msa0370400-mRNA-1
chr3_1 exon 68088645 68089199 68088645 ID=Msa0370400-mRNA-1:exon:14152;Parent=Msa0370400-mRNA-1
chr3_1 five_prime_UTR 68087826 68088051 68087826 ID=Msa0370400-mRNA-1:five_prime_utr;Parent=Msa0370400-mRNA-1
chr3_1 CDS 68088052 68088205 68088052 ID=Msa0370400-mRNA-1:cds;Parent=Msa0370400-mRNA-1
chr3_1 CDS 68088645 68088940 68088645 ID=Msa0370400-mRNA-1:cds;Parent=Msa0370400-mRNA-1
chr3_1 three_prime_UTR 68088941 68089199 68088941 ID=Msa0370400-mRNA-1:three_prime_utr;Parent=Msa0370400-mRNA-1
Gene Sequence

>Msa0370400

ATGGGAGTACAGGGTACCCTAGAATACTTGTCTGATTTACTCAGTAGCACAAAAAAGAAAAAGAAGAAGCAAACTCAAACTGTATCTCTTAAAATCAGAATGGACTGTGAAGGTTGTGCTCGCAAGGTTAAGCATGTCCTTTCTGGTGTTAAAGGAGCTAAGAAAGTGGATGTGGACTTGAAGCAGCAGAAAGTAACAGTGAGTGGATATGTTGAACCAAAGAAAGTGTTGAAAGCTGCTCAATCAACAAAGAAGAAGGTCGAGCTTTGGCCTTATGTTCCATACACTATGGTGGCTCACCCTTATATTTCACAAGCCTATGATAAGAAAGCACCTCCTAATATGGTTAGAAAGGTTGCTGACACTTCCAACATAAAAGAGTCCACTTTTGATGATAGCTATGTTGAAATGTTCAGTGATGAAAATCCAAATGCTTGTTCTATTATGTAG
Protein sequence

>Msa0370400

MGVQGTLEYLSDLLSSTKKKKKKQTQTVSLKIRMDCEGCARKVKHVLSGVKGAKKVDVDLKQQKVTVSGYVEPKKVLKAAQSTKKKVELWPYVPYTMVAHPYISQAYDKKAPPNMVRKVADTSNIKESTFDDSYVEMFSDENPNACSIM*