AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0418760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418760 MtrunA17_Chr3g0116431 91.826 367 21 6 1 364 1 361 0.0 667
Msa0418760 MtrunA17_Chr3g0116431 32.353 136 88 2 185 316 363 498 1.02e-16 81.6
Msa0418760 MtrunA17_Chr3g0116431 40.659 91 53 1 159 249 385 474 4.99e-15 76.3
Msa0418760 MtrunA17_Chr4g0058011 49.020 408 139 18 17 366 25 421 4.24e-105 320
Msa0418760 MtrunA17_Chr4g0058011 38.667 75 46 0 223 297 460 534 4.86e-13 70.5
Msa0418760 MtrunA17_Chr4g0066941 47.656 128 65 1 172 299 41 166 1.68e-36 138
Msa0418760 MtrunA17_Chr4g0066941 44.737 76 40 2 221 296 332 405 5.85e-15 76.3
Msa0418760 MtrunA17_Chr4g0066941 40.506 79 42 2 175 252 333 407 1.69e-11 65.5
Msa0418760 MtrunA17_Chr7g0249221 46.094 128 67 1 174 301 27 152 4.45e-36 135
Msa0418760 MtrunA17_Chr7g0249221 46.053 76 41 0 221 296 275 350 5.50e-16 79.0
Msa0418760 MtrunA17_Chr7g0249221 36.296 135 58 5 129 255 241 355 1.20e-15 77.8
Msa0418760 MtrunA17_Chr7g0249221 35.714 98 45 3 173 263 71 157 8.40e-13 69.3
Msa0418760 MtrunA17_Chr2g0286151 47.287 129 66 2 174 301 44 171 1.69e-34 132
Msa0418760 MtrunA17_Chr5g0438891 38.265 196 108 7 174 363 36 224 2.35e-33 128
Msa0418760 MtrunA17_Chr5g0438891 38.095 126 71 2 215 340 256 374 8.66e-19 87.4
Msa0418760 MtrunA17_Chr5g0438891 36.134 119 66 4 137 249 220 334 1.27e-14 74.7
Msa0418760 MtrunA17_Chr5g0438891 46.250 80 37 2 172 249 76 151 1.89e-13 71.2
Msa0418760 MtrunA17_Chr1g0195891 41.353 133 76 1 167 299 39 169 1.19e-30 119
Msa0418760 MtrunA17_Chr8g0356241 34.737 190 77 5 140 297 165 339 6.07e-26 108
Msa0418760 MtrunA17_Chr8g0356241 34.706 170 68 4 175 301 310 479 6.16e-25 105
Msa0418760 MtrunA17_Chr8g0356241 40.506 79 44 1 174 249 395 473 7.76e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418760 AT5G63260.1 58.163 196 79 2 174 366 98 293 1.33e-69 225
Msa0418760 AT5G63260.1 39.024 82 50 0 219 300 329 410 1.94e-14 74.7
Msa0418760 AT3G48440.1 51.905 210 95 4 161 364 93 302 9.62e-67 218
Msa0418760 AT3G48440.1 47.500 80 41 1 171 250 340 418 5.41e-17 82.4
Msa0418760 AT3G48440.1 42.857 77 44 0 219 295 341 417 2.54e-14 74.3
Msa0418760 AT5G63260.2 53.774 212 79 3 174 366 98 309 2.27e-65 214
Msa0418760 AT5G63260.2 39.024 82 50 0 219 300 345 426 2.45e-14 74.3
Msa0418760 AT1G04990.5 36.530 219 126 6 151 366 21 229 5.38e-40 146
Msa0418760 AT1G04990.1 36.530 219 126 6 151 366 21 229 6.44e-40 146
Msa0418760 AT1G04990.1 42.105 76 44 0 221 296 258 333 5.80e-13 70.1
Msa0418760 AT1G04990.6 36.530 219 126 6 151 366 21 229 6.44e-40 146
Msa0418760 AT1G04990.6 42.105 76 44 0 221 296 258 333 5.80e-13 70.1
Msa0418760 AT1G04990.2 36.530 219 126 6 151 366 21 229 6.44e-40 146
Msa0418760 AT1G04990.2 42.105 76 44 0 221 296 258 333 5.80e-13 70.1
Msa0418760 AT2G32930.2 35.268 224 130 6 152 366 19 236 2.99e-37 140
Msa0418760 AT2G32930.2 40.845 71 42 0 225 295 266 336 1.93e-12 68.6
Msa0418760 AT3G02830.1 47.794 136 69 1 174 309 37 170 1.05e-36 137
Msa0418760 AT3G02830.1 37.391 115 61 2 221 326 271 383 5.22e-17 82.4
Msa0418760 AT3G02830.1 40.659 91 39 2 174 257 271 353 8.71e-14 72.4
Msa0418760 AT3G02830.2 47.794 136 69 1 174 309 17 150 1.36e-36 137
Msa0418760 AT3G02830.2 37.391 115 61 2 221 326 251 363 5.84e-17 82.0
Msa0418760 AT3G02830.2 40.659 91 39 2 174 257 251 333 1.27e-13 72.0
Msa0418760 AT2G32930.3 35.681 213 122 6 163 366 3 209 1.88e-36 137
Msa0418760 AT2G32930.3 40.845 71 42 0 225 295 239 309 2.43e-12 68.2
Msa0418760 AT5G18550.3 45.455 132 69 2 172 301 14 144 1.48e-35 135
Msa0418760 AT5G18550.3 40.000 75 44 1 221 295 265 338 4.72e-14 73.6
Msa0418760 AT5G18550.3 35.897 78 48 1 172 249 263 338 3.78e-12 67.8
Msa0418760 AT3G06410.1 46.970 132 67 2 172 301 49 179 1.52e-35 135
Msa0418760 AT3G06410.1 39.474 76 46 0 220 295 303 378 3.80e-14 73.9
Msa0418760 AT3G06410.1 34.884 86 49 2 167 249 297 378 2.91e-12 68.2
Msa0418760 AT5G18550.1 45.455 132 69 2 172 301 46 176 1.81e-35 135
Msa0418760 AT5G18550.1 40.000 75 44 1 221 295 297 370 4.67e-14 73.6
Msa0418760 AT5G18550.1 35.897 78 48 1 172 249 295 370 4.84e-12 67.4
Msa0418760 AT5G18550.2 45.455 132 69 2 172 301 46 176 1.94e-35 135
Msa0418760 AT5G18550.2 34.615 78 36 1 172 249 295 357 2.29e-11 65.5
Msa0418760 AT5G18550.4 45.455 132 69 2 172 301 46 176 2.19e-35 135
Msa0418760 AT5G18550.4 40.000 75 44 1 221 295 297 370 5.22e-14 73.6
Msa0418760 AT5G18550.4 35.897 78 48 1 172 249 295 370 5.14e-12 67.4
Msa0418760 AT2G32930.1 34.821 224 127 7 152 366 19 232 7.71e-34 130
Msa0418760 AT2G32930.1 40.845 71 42 0 225 295 262 332 1.69e-12 68.9
Msa0418760 AT5G16540.4 40.252 159 91 2 174 332 18 172 2.39e-32 122
Msa0418760 AT5G16540.4 33.158 190 58 6 173 296 62 248 2.67e-18 84.3
Msa0418760 AT5G16540.4 36.842 95 55 2 204 296 1 92 4.52e-14 72.0
Msa0418760 AT5G16540.2 40.252 159 91 2 174 332 39 193 5.04e-32 124
Msa0418760 AT5G16540.2 33.158 190 58 6 173 296 83 269 2.83e-18 85.9
Msa0418760 AT5G16540.2 43.902 82 38 1 174 255 240 313 2.32e-14 73.9
Msa0418760 AT5G16540.2 35.238 105 57 3 200 296 12 113 2.39e-14 73.9
Msa0418760 AT5G16540.1 40.252 159 91 2 174 332 39 193 5.34e-32 124
Msa0418760 AT5G16540.1 33.158 190 58 6 173 296 83 269 2.86e-18 85.9
Msa0418760 AT5G16540.1 46.053 76 41 0 221 296 240 315 4.63e-16 79.3
Msa0418760 AT5G16540.1 35.238 105 57 3 200 296 12 113 2.25e-14 74.3
Msa0418760 AT5G16540.1 41.573 89 37 2 174 255 240 320 2.38e-13 71.2
Msa0418760 AT5G16540.3 40.252 159 91 2 174 332 18 172 5.63e-32 124
Msa0418760 AT5G16540.3 33.158 190 58 6 173 296 62 248 3.19e-18 85.5
Msa0418760 AT5G16540.3 46.053 76 41 0 221 296 219 294 4.71e-16 79.0
Msa0418760 AT5G16540.3 36.842 95 55 2 204 296 1 92 5.37e-14 72.8
Msa0418760 AT5G16540.3 40.659 91 39 2 174 257 219 301 2.60e-13 70.9
Msa0418760 AT2G47850.1 38.667 150 88 2 152 299 18 165 1.37e-31 124
Msa0418760 AT2G47850.1 41.935 93 44 1 204 296 279 361 9.91e-18 84.7
Msa0418760 AT2G47850.1 40.000 90 39 2 172 254 284 365 2.04e-13 71.6
Msa0418760 AT2G47850.3 38.667 150 88 2 152 299 18 165 1.37e-31 124
Msa0418760 AT2G47850.3 41.935 93 44 1 204 296 279 361 9.91e-18 84.7
Msa0418760 AT2G47850.3 40.000 90 39 2 172 254 284 365 2.04e-13 71.6
Msa0418760 AT3G12680.1 35.294 187 81 4 140 300 198 370 1.51e-30 122
Msa0418760 AT3G12680.1 35.503 169 65 3 175 301 338 504 3.74e-27 112
Msa0418760 AT3G12680.1 39.024 82 44 1 174 249 417 498 8.04e-14 73.2
Msa0418760 AT1G04990.4 34.965 143 84 5 227 366 12 148 7.73e-22 95.1
Msa0418760 AT1G04990.3 34.965 143 84 5 227 366 12 148 9.40e-22 95.1
Msa0418760 AT1G04990.3 42.105 76 44 0 221 296 177 252 5.27e-13 69.7
Msa0418760 AT2G47850.4 41.935 93 44 1 204 296 157 239 1.80e-18 85.9
Msa0418760 AT2G47850.4 40.000 90 39 2 172 254 162 243 3.93e-14 73.2
Msa0418760 AT2G47850.2 33.884 121 76 2 152 270 18 136 3.02e-18 86.3
Msa0418760 AT2G47850.2 41.935 93 44 1 204 296 253 335 5.22e-18 85.5
Msa0418760 AT2G47850.2 39.744 78 46 1 219 296 40 116 2.39e-14 74.3
Msa0418760 AT2G47850.2 40.000 90 39 2 172 254 258 339 9.94e-14 72.8
Msa0418760 AT1G48195.1 38.961 77 47 0 219 295 4 80 3.40e-14 67.8
Msa0418760 AT1G48195.1 41.250 80 42 2 172 249 4 80 6.24e-12 61.6

Find 98 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACTGGAACTTGCAAATT+TGG 0.144169 3_2:-66589414 Msa0418760:CDS
GAACCGGTGCGCATGTAATA+AGG 0.235921 3_2:+66588105 None:intergenic
TTGAAAGAGTGAGAGAAATA+AGG 0.254892 3_2:+66590059 None:intergenic
CGCACCGGTTCTTGTAAGTT+TGG 0.307678 3_2:-66588093 Msa0418760:CDS
GGAAGGAGAAAGAGATGAAT+TGG 0.321101 3_2:-66589108 Msa0418760:CDS
TCCATTCCAATCAGAACTTC+GGG 0.344770 3_2:+66587873 None:intergenic
ACCTGGTTTCTTCTCCAAAC+AGG 0.348538 3_2:+66589369 None:intergenic
AAAGAACAGTCTTCAGCTTC+AGG 0.362830 3_2:+66589444 None:intergenic
TATGACTCCACTTCAGGATA+TGG 0.363041 3_2:-66588024 Msa0418760:CDS
TCAACAATCTCAATCACATT+TGG 0.369732 3_2:-66589964 Msa0418760:CDS
GCAAGTTTAATCACCCTGTT+TGG 0.377149 3_2:-66589383 Msa0418760:CDS
TGACAGTATTATTCAAGATC+TGG 0.378857 3_2:-66588370 Msa0418760:intron
TTCTGATTGGAATGGATATC+AGG 0.393291 3_2:-66587866 Msa0418760:CDS
TGCTCCAAACTTACAAGAAC+CGG 0.396802 3_2:+66588089 None:intergenic
GGAGGGTATGACTCCACTTC+AGG 0.396887 3_2:-66588030 Msa0418760:CDS
CCTTGGCCTACCTATTCGTT+TGG 0.402338 3_2:-66588266 Msa0418760:intron
TCAATCAAATTTCAACTACT+AGG 0.403584 3_2:-66590033 Msa0418760:five_prime_UTR
GTTGGTGGAATTGATGATAA+AGG 0.406722 3_2:-66589675 Msa0418760:CDS
TGATTGAGATCTGAGGGTTC+AGG 0.413394 3_2:+66589894 None:intergenic
CTTCTCCCCGAAGTTCTGAT+TGG 0.413563 3_2:-66587879 Msa0418760:CDS
TCAGGATGATGATTGGAAAC+AGG 0.426300 3_2:+66589912 None:intergenic
GAGGATGGAATTGAGGAAAA+AGG 0.428119 3_2:-66589822 Msa0418760:CDS
TGCTGTTCTAGAATCTGATA+AGG 0.429800 3_2:-66589772 Msa0418760:CDS
AAAATACCTTGCATTCTGTC+TGG 0.433659 3_2:+66589072 None:intergenic
AAAGCTTATACCAAACGAAT+AGG 0.433676 3_2:+66588256 None:intergenic
ATCTGCTGAAAACTTTCCTC+TGG 0.440653 3_2:+66588309 None:intergenic
AGTGAGAGAAATAAGGTTGT+GGG 0.440988 3_2:+66590066 None:intergenic
CAATCAAATTTCAACTACTA+GGG 0.452100 3_2:-66590032 Msa0418760:five_prime_UTR
TGAGGGTTCAGGATGATGAT+TGG 0.453154 3_2:+66589905 None:intergenic
ATGATAATGTGGTGAGTGAT+TGG 0.454378 3_2:-66589539 Msa0418760:CDS
ATCATAATTTCACCGACTCC+AGG 0.458700 3_2:-66587904 Msa0418760:CDS
TCTTCAGCTTCAGGCCTCAA+TGG 0.459779 3_2:+66589453 None:intergenic
GAAAGCTGAGGATGGAATTG+AGG 0.460065 3_2:-66589829 Msa0418760:CDS
AAAGGTTCAAACTTTGATGT+TGG 0.470206 3_2:-66589804 Msa0418760:CDS
ATCCATTCCAATCAGAACTT+CGG 0.470941 3_2:+66587872 None:intergenic
GACAGTATTATTCAAGATCT+GGG 0.472642 3_2:-66588369 Msa0418760:intron
CATCAATTTGATGATGATGA+TGG 0.474092 3_2:-66589591 Msa0418760:CDS
GAAATTATGATTGGCACAAA+AGG 0.475046 3_2:+66587916 None:intergenic
GAACTTCGGGGAGAAGCCCC+TGG 0.478122 3_2:+66587886 None:intergenic
AACCGGTGCGCATGTAATAA+GGG 0.486519 3_2:+66588106 None:intergenic
GAGTGAGAGAAATAAGGTTG+TGG 0.488683 3_2:+66590065 None:intergenic
TCTGAAGCTCATCATCAAGT+TGG 0.490964 3_2:+66589865 None:intergenic
CCCGATCCTACATCTGTTGG+AGG 0.492082 3_2:-66588048 Msa0418760:CDS
CTGAAGCTCATCATCAAGTT+GGG 0.493894 3_2:+66589866 None:intergenic
CATCCCGATCCTACATCTGT+TGG 0.500007 3_2:-66588051 Msa0418760:CDS
GGTTGGAATGGTGATTATGA+TGG 0.504782 3_2:-66589570 Msa0418760:CDS
CCCTGTTTGGAGAAGAAACC+AGG 0.508022 3_2:-66589370 Msa0418760:intron
GTCAATTGATTGAGATCTGA+GGG 0.519840 3_2:+66589888 None:intergenic
GGAATGGTGATTATGATGGT+TGG 0.520805 3_2:-66589566 Msa0418760:CDS
GGAGTCGGTGAAATTATGAT+TGG 0.524224 3_2:+66587907 None:intergenic
CCCTCCAACAGATGTAGGAT+CGG 0.524928 3_2:+66588047 None:intergenic
AGGAGAAAGAGATGAATTGG+AGG 0.525657 3_2:-66589105 Msa0418760:CDS
TGATGAGCTTCAGAACAAGT+TGG 0.527576 3_2:-66589856 Msa0418760:CDS
TCCACTTCAGGATATGGTAA+TGG 0.528389 3_2:-66588018 Msa0418760:CDS
CCCCGAAGTTCTGATTGGAA+TGG 0.535856 3_2:-66587874 Msa0418760:CDS
CCTCCAACAGATGTAGGATC+GGG 0.539485 3_2:+66588048 None:intergenic
TCATAATTTCACCGACTCCA+GGG 0.539855 3_2:-66587903 Msa0418760:CDS
AATTTGATGATGATGATGGT+TGG 0.543460 3_2:-66589587 Msa0418760:CDS
TTGGATTTGAAAGCTGAGGA+TGG 0.550068 3_2:-66589837 Msa0418760:CDS
CGGGGAGAAGCCCCTGGAGT+CGG 0.550896 3_2:+66587892 None:intergenic
CAGGATGATGATTGGAAACA+GGG 0.550924 3_2:+66589913 None:intergenic
GCTGTTCTAGAATCTGATAA+GGG 0.555394 3_2:-66589771 Msa0418760:CDS
TCATACCCTCCAACAGATGT+AGG 0.560380 3_2:+66588042 None:intergenic
TGCCCTTATTACATGCGCAC+CGG 0.565218 3_2:-66588108 Msa0418760:CDS
TCCATTACCATATCCTGAAG+TGG 0.570036 3_2:+66588017 None:intergenic
CTTATACCAAACGAATAGGT+AGG 0.578718 3_2:+66588260 None:intergenic
ATCTGCCACAGTATCTGAGA+AGG 0.580494 3_2:-66589625 Msa0418760:CDS
CCTGGTTTCTTCTCCAAACA+GGG 0.582322 3_2:+66589370 None:intergenic
GATTGTTGAGACGGTTCCAT+TGG 0.582618 3_2:+66589978 None:intergenic
CAAGTTGGATTTGAAAGCTG+AGG 0.582725 3_2:-66589841 Msa0418760:CDS
TGAGACGGTTCCATTGGTGA+TGG 0.584359 3_2:+66589984 None:intergenic
CATAATTTCACCGACTCCAG+GGG 0.587604 3_2:-66587902 Msa0418760:CDS
GGTCAATTGATTGAGATCTG+AGG 0.589485 3_2:+66589887 None:intergenic
GAGTGATTGGATTGAGAATG+AGG 0.592997 3_2:-66589526 Msa0418760:CDS
ACAGTATCTGAGAAGGGACA+AGG 0.594511 3_2:-66589618 Msa0418760:CDS
ATCAAGCCAGACAGAATGCA+AGG 0.596249 3_2:-66589078 Msa0418760:intron
TGGAGGGATTCCATCACCAA+TGG 0.596967 3_2:-66589994 Msa0418760:exon
GATGATGATGATGGTTGGAA+TGG 0.597808 3_2:-66589582 Msa0418760:CDS
TGTGATTGAGATTGTTGAGA+CGG 0.598910 3_2:+66589969 None:intergenic
ACAGTATTATTCAAGATCTG+GGG 0.604261 3_2:-66588368 Msa0418760:intron
GATGATGATGATGAAGTTGG+TGG 0.608228 3_2:-66589690 Msa0418760:CDS
CAGTATTATTCAAGATCTGG+GGG 0.613736 3_2:-66588367 Msa0418760:CDS
CCAAACGAATAGGTAGGCCA+AGG 0.617276 3_2:+66588266 None:intergenic
ATTGAGAATGAGGTGGTGAG+TGG 0.632045 3_2:-66589516 Msa0418760:CDS
TGTAAATTTGATCACACCAG+AGG 0.632238 3_2:-66588325 Msa0418760:CDS
TTGTCCCTTCTCAGATACTG+TGG 0.633350 3_2:+66589620 None:intergenic
GTTGATGAAAGAAGCAATGG+TGG 0.641485 3_2:-66589489 Msa0418760:CDS
CCGATCCTACATCTGTTGGA+GGG 0.641989 3_2:-66588047 Msa0418760:CDS
TCTGCCACAGTATCTGAGAA+GGG 0.649421 3_2:-66589624 Msa0418760:CDS
TACGTTGATGAAAGAAGCAA+TGG 0.659207 3_2:-66589492 Msa0418760:CDS
CAGTATCTGAGAAGGGACAA+GGG 0.662707 3_2:-66589617 Msa0418760:CDS
TGGTTGGAATGATGATAATG+TGG 0.669541 3_2:-66589550 Msa0418760:CDS
TGATGAGAAAGTGAATGAGA+AGG 0.685115 3_2:-66589724 Msa0418760:CDS
GAGCTGAACAGTATCCATTG+AGG 0.685815 3_2:-66589467 Msa0418760:CDS
AGGATGATGATTGGAAACAG+GGG 0.702661 3_2:+66589914 None:intergenic
CCATTCCAATCAGAACTTCG+GGG 0.758521 3_2:+66587874 None:intergenic
TGATTGGATTGAGAATGAGG+TGG 0.762353 3_2:-66589523 Msa0418760:CDS
TTTCTGGTAGAAGACCATGG+GGG 0.864818 3_2:+66587955 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTAAAACTAAATGA+AGG - chr3_2:66588824-66588843 Msa0418760:intron 10.0%
!!! TTTTATTTAAAACTAAATGA+AGG - chr3_2:66588824-66588843 Msa0418760:intron 10.0%
!! TTTATTTGAGGAAAAATAAA+AGG + chr3_2:66587881-66587900 None:intergenic 15.0%
!! ACTTAATATACATAAATGAA+TGG + chr3_2:66588721-66588740 None:intergenic 15.0%
!! TTTATTTGAGGAAAAATAAA+AGG + chr3_2:66587881-66587900 None:intergenic 15.0%
!! ACTTAATATACATAAATGAA+TGG + chr3_2:66588721-66588740 None:intergenic 15.0%
!!! TTTTTCTGACATAATTTACT+CGG + chr3_2:66589329-66589348 None:intergenic 20.0%
!!! TTTGCTATATTGAAAAATGT+TGG - chr3_2:66589436-66589455 Msa0418760:CDS 20.0%
!! GTTATAATCTAAATAATAGC+AGG + chr3_2:66589546-66589565 None:intergenic 20.0%
!!! TTTTTCTGACATAATTTACT+CGG + chr3_2:66589329-66589348 None:intergenic 20.0%
!!! TTTGCTATATTGAAAAATGT+TGG - chr3_2:66589436-66589455 Msa0418760:CDS 20.0%
!! GTTATAATCTAAATAATAGC+AGG + chr3_2:66589546-66589565 None:intergenic 20.0%
! TCAATCAAATTTCAACTACT+AGG - chr3_2:66587935-66587954 Msa0418760:CDS 25.0%
! CAATCAAATTTCAACTACTA+GGG - chr3_2:66587936-66587955 Msa0418760:CDS 25.0%
!! TGTTCTTTTTATCTTAAGAC+TGG - chr3_2:66588539-66588558 Msa0418760:intron 25.0%
! TCTTATATGTTATAGCATAG+CGG - chr3_2:66589152-66589171 Msa0418760:intron 25.0%
! ATCAATTATGAATATGCTTC+TGG - chr3_2:66589372-66589391 Msa0418760:CDS 25.0%
!!! TTTTTCAATATAGCAAAGCT+AGG + chr3_2:66589433-66589452 None:intergenic 25.0%
! TCAATCAAATTTCAACTACT+AGG - chr3_2:66587935-66587954 Msa0418760:CDS 25.0%
! CAATCAAATTTCAACTACTA+GGG - chr3_2:66587936-66587955 Msa0418760:CDS 25.0%
!! TGTTCTTTTTATCTTAAGAC+TGG - chr3_2:66588539-66588558 Msa0418760:intron 25.0%
! TCTTATATGTTATAGCATAG+CGG - chr3_2:66589152-66589171 Msa0418760:intron 25.0%
! ATCAATTATGAATATGCTTC+TGG - chr3_2:66589372-66589391 Msa0418760:CDS 25.0%
!!! TTTTTCAATATAGCAAAGCT+AGG + chr3_2:66589433-66589452 None:intergenic 25.0%
TTGAAAGAGTGAGAGAAATA+AGG + chr3_2:66587912-66587931 None:intergenic 30.0%
!!! TAGGGTTTCTTTTTGAAATG+TGG - chr3_2:66587954-66587973 Msa0418760:CDS 30.0%
!!! GTTTCTTTTTGAAATGTGGA+GGG - chr3_2:66587958-66587977 Msa0418760:CDS 30.0%
TCAACAATCTCAATCACATT+TGG - chr3_2:66588004-66588023 Msa0418760:CDS 30.0%
AAAGGTTCAAACTTTGATGT+TGG - chr3_2:66588164-66588183 Msa0418760:intron 30.0%
!! CATCAATTTGATGATGATGA+TGG - chr3_2:66588377-66588396 Msa0418760:intron 30.0%
!! AATTTGATGATGATGATGGT+TGG - chr3_2:66588381-66588400 Msa0418760:intron 30.0%
!! AAATGAAGGTTTTTAGAGAG+AGG - chr3_2:66588838-66588857 Msa0418760:intron 30.0%
!! AATGAAGGTTTTTAGAGAGA+GGG - chr3_2:66588839-66588858 Msa0418760:intron 30.0%
! TTTTATGAATGCCTTGACTA+TGG - chr3_2:66588968-66588987 Msa0418760:intron 30.0%
TGTTGTCAAATAGACTATAG+CGG - chr3_2:66589222-66589241 Msa0418760:intron 30.0%
!! TGAATATGCTTCTGGAATAA+TGG - chr3_2:66589380-66589399 Msa0418760:CDS 30.0%
!! GAATATGCTTCTGGAATAAT+GGG - chr3_2:66589381-66589400 Msa0418760:CDS 30.0%
TACTGTCATGTCATAACATT+AGG + chr3_2:66589586-66589605 None:intergenic 30.0%
TGACAGTATTATTCAAGATC+TGG - chr3_2:66589598-66589617 Msa0418760:CDS 30.0%
GACAGTATTATTCAAGATCT+GGG - chr3_2:66589599-66589618 Msa0418760:CDS 30.0%
ACAGTATTATTCAAGATCTG+GGG - chr3_2:66589600-66589619 Msa0418760:CDS 30.0%
AAAGCTTATACCAAACGAAT+AGG + chr3_2:66589715-66589734 None:intergenic 30.0%
! AGCAGTTTCATTGAATTTTC+TGG + chr3_2:66590032-66590051 None:intergenic 30.0%
GAAATTATGATTGGCACAAA+AGG + chr3_2:66590055-66590074 None:intergenic 30.0%
TTGAAAGAGTGAGAGAAATA+AGG + chr3_2:66587912-66587931 None:intergenic 30.0%
!!! TAGGGTTTCTTTTTGAAATG+TGG - chr3_2:66587954-66587973 Msa0418760:CDS 30.0%
!!! GTTTCTTTTTGAAATGTGGA+GGG - chr3_2:66587958-66587977 Msa0418760:CDS 30.0%
TCAACAATCTCAATCACATT+TGG - chr3_2:66588004-66588023 Msa0418760:CDS 30.0%
AAAGGTTCAAACTTTGATGT+TGG - chr3_2:66588164-66588183 Msa0418760:intron 30.0%
!! CATCAATTTGATGATGATGA+TGG - chr3_2:66588377-66588396 Msa0418760:intron 30.0%
!! AATTTGATGATGATGATGGT+TGG - chr3_2:66588381-66588400 Msa0418760:intron 30.0%
!! AAATGAAGGTTTTTAGAGAG+AGG - chr3_2:66588838-66588857 Msa0418760:intron 30.0%
!! AATGAAGGTTTTTAGAGAGA+GGG - chr3_2:66588839-66588858 Msa0418760:intron 30.0%
! TTTTATGAATGCCTTGACTA+TGG - chr3_2:66588968-66588987 Msa0418760:intron 30.0%
TGTTGTCAAATAGACTATAG+CGG - chr3_2:66589222-66589241 Msa0418760:intron 30.0%
!! TGAATATGCTTCTGGAATAA+TGG - chr3_2:66589380-66589399 Msa0418760:CDS 30.0%
!! GAATATGCTTCTGGAATAAT+GGG - chr3_2:66589381-66589400 Msa0418760:CDS 30.0%
TACTGTCATGTCATAACATT+AGG + chr3_2:66589586-66589605 None:intergenic 30.0%
TGACAGTATTATTCAAGATC+TGG - chr3_2:66589598-66589617 Msa0418760:CDS 30.0%
GACAGTATTATTCAAGATCT+GGG - chr3_2:66589599-66589618 Msa0418760:CDS 30.0%
ACAGTATTATTCAAGATCTG+GGG - chr3_2:66589600-66589619 Msa0418760:CDS 30.0%
AAAGCTTATACCAAACGAAT+AGG + chr3_2:66589715-66589734 None:intergenic 30.0%
! AGCAGTTTCATTGAATTTTC+TGG + chr3_2:66590032-66590051 None:intergenic 30.0%
GAAATTATGATTGGCACAAA+AGG + chr3_2:66590055-66590074 None:intergenic 30.0%
!!! AAGGTTGTGGGTTTTATTTG+AGG + chr3_2:66587893-66587912 None:intergenic 35.0%
AGTGAGAGAAATAAGGTTGT+GGG + chr3_2:66587905-66587924 None:intergenic 35.0%
!!! GGTTTCTTTTTGAAATGTGG+AGG - chr3_2:66587957-66587976 Msa0418760:CDS 35.0%
TGTGATTGAGATTGTTGAGA+CGG + chr3_2:66588002-66588021 None:intergenic 35.0%
GTCAATTGATTGAGATCTGA+GGG + chr3_2:66588083-66588102 None:intergenic 35.0%
!! TGCTGTTCTAGAATCTGATA+AGG - chr3_2:66588196-66588215 Msa0418760:intron 35.0%
!! GCTGTTCTAGAATCTGATAA+GGG - chr3_2:66588197-66588216 Msa0418760:intron 35.0%
TCTCATCATCATCATCATCA+TGG + chr3_2:66588232-66588251 None:intergenic 35.0%
TGATGAGAAAGTGAATGAGA+AGG - chr3_2:66588244-66588263 Msa0418760:intron 35.0%
! GATGATGATGATGATGAAGT+TGG - chr3_2:66588275-66588294 Msa0418760:CDS 35.0%
! GTTGGTGGAATTGATGATAA+AGG - chr3_2:66588293-66588312 Msa0418760:CDS 35.0%
! TGGTTGGAATGATGATAATG+TGG - chr3_2:66588418-66588437 Msa0418760:intron 35.0%
! ATGATAATGTGGTGAGTGAT+TGG - chr3_2:66588429-66588448 Msa0418760:intron 35.0%
! TACGTTGATGAAAGAAGCAA+TGG - chr3_2:66588476-66588495 Msa0418760:intron 35.0%
AAGACTGGAACTTGCAAATT+TGG - chr3_2:66588554-66588573 Msa0418760:intron 35.0%
GAACATAAGAAAGTGATACC+TGG + chr3_2:66588619-66588638 None:intergenic 35.0%
! AGTAAGAGTGTACTAGAAAG+AGG + chr3_2:66588641-66588660 None:intergenic 35.0%
AAAATACCTTGCATTCTGTC+TGG + chr3_2:66588899-66588918 None:intergenic 35.0%
GATTGTGTAAGGTTAACTCT+AGG - chr3_2:66589057-66589076 Msa0418760:intron 35.0%
TGCTCAGTATTGTCAAATAG+CGG - chr3_2:66589118-66589137 Msa0418760:CDS 35.0%
TATTGTCAAATAGCGGCTAT+AGG - chr3_2:66589125-66589144 Msa0418760:CDS 35.0%
ATTGTCAAATAGCGGCTATA+GGG - chr3_2:66589126-66589145 Msa0418760:intron 35.0%
TTGTCAATCACGGAAAATAG+TGG + chr3_2:66589284-66589303 None:intergenic 35.0%
ATAGGTAGTGTTGTCAATCA+CGG + chr3_2:66589294-66589313 None:intergenic 35.0%
ACAAGTTTAAGAAATGGCTC+AGG + chr3_2:66589523-66589542 None:intergenic 35.0%
AGCAGGACAAGTTTAAGAAA+TGG + chr3_2:66589529-66589548 None:intergenic 35.0%
CAGTATTATTCAAGATCTGG+GGG - chr3_2:66589601-66589620 Msa0418760:CDS 35.0%
TGTAAATTTGATCACACCAG+AGG - chr3_2:66589643-66589662 Msa0418760:CDS 35.0%
!!! GTTTTAGAGCTTAACTTCCT+TGG - chr3_2:66589685-66589704 Msa0418760:CDS 35.0%
CTTATACCAAACGAATAGGT+AGG + chr3_2:66589711-66589730 None:intergenic 35.0%
ACAACACGGCTAAAATTTCA+GGG + chr3_2:66589816-66589835 None:intergenic 35.0%
AACAACACGGCTAAAATTTC+AGG + chr3_2:66589817-66589836 None:intergenic 35.0%
CCCTATCATGAAAAACAACA+CGG + chr3_2:66589830-66589849 None:intergenic 35.0%
!!! CCGTGTTGTTTTTCATGATA+GGG - chr3_2:66589827-66589846 Msa0418760:CDS 35.0%
!!! TGTTGTTTTTCATGATAGGG+TGG - chr3_2:66589830-66589849 Msa0418760:CDS 35.0%
!!! GTTGTTTTTCATGATAGGGT+GGG - chr3_2:66589831-66589850 Msa0418760:CDS 35.0%
!! ATTTTCTGGTAGAAGACCAT+GGG + chr3_2:66590018-66590037 None:intergenic 35.0%
!! AATTTTCTGGTAGAAGACCA+TGG + chr3_2:66590019-66590038 None:intergenic 35.0%
ATCCATTCCAATCAGAACTT+CGG + chr3_2:66590099-66590118 None:intergenic 35.0%
TTCTGATTGGAATGGATATC+AGG - chr3_2:66590102-66590121 Msa0418760:five_prime_UTR 35.0%
!!! AAGGTTGTGGGTTTTATTTG+AGG + chr3_2:66587893-66587912 None:intergenic 35.0%
AGTGAGAGAAATAAGGTTGT+GGG + chr3_2:66587905-66587924 None:intergenic 35.0%
!!! GGTTTCTTTTTGAAATGTGG+AGG - chr3_2:66587957-66587976 Msa0418760:CDS 35.0%
TGTGATTGAGATTGTTGAGA+CGG + chr3_2:66588002-66588021 None:intergenic 35.0%
GTCAATTGATTGAGATCTGA+GGG + chr3_2:66588083-66588102 None:intergenic 35.0%
!! TGCTGTTCTAGAATCTGATA+AGG - chr3_2:66588196-66588215 Msa0418760:intron 35.0%
!! GCTGTTCTAGAATCTGATAA+GGG - chr3_2:66588197-66588216 Msa0418760:intron 35.0%
TCTCATCATCATCATCATCA+TGG + chr3_2:66588232-66588251 None:intergenic 35.0%
TGATGAGAAAGTGAATGAGA+AGG - chr3_2:66588244-66588263 Msa0418760:intron 35.0%
! GATGATGATGATGATGAAGT+TGG - chr3_2:66588275-66588294 Msa0418760:CDS 35.0%
! GTTGGTGGAATTGATGATAA+AGG - chr3_2:66588293-66588312 Msa0418760:CDS 35.0%
! TGGTTGGAATGATGATAATG+TGG - chr3_2:66588418-66588437 Msa0418760:intron 35.0%
! ATGATAATGTGGTGAGTGAT+TGG - chr3_2:66588429-66588448 Msa0418760:intron 35.0%
! TACGTTGATGAAAGAAGCAA+TGG - chr3_2:66588476-66588495 Msa0418760:intron 35.0%
AAGACTGGAACTTGCAAATT+TGG - chr3_2:66588554-66588573 Msa0418760:intron 35.0%
GAACATAAGAAAGTGATACC+TGG + chr3_2:66588619-66588638 None:intergenic 35.0%
! AGTAAGAGTGTACTAGAAAG+AGG + chr3_2:66588641-66588660 None:intergenic 35.0%
AAAATACCTTGCATTCTGTC+TGG + chr3_2:66588899-66588918 None:intergenic 35.0%
GATTGTGTAAGGTTAACTCT+AGG - chr3_2:66589057-66589076 Msa0418760:intron 35.0%
TGCTCAGTATTGTCAAATAG+CGG - chr3_2:66589118-66589137 Msa0418760:CDS 35.0%
TATTGTCAAATAGCGGCTAT+AGG - chr3_2:66589125-66589144 Msa0418760:CDS 35.0%
ATTGTCAAATAGCGGCTATA+GGG - chr3_2:66589126-66589145 Msa0418760:intron 35.0%
TTGTCAATCACGGAAAATAG+TGG + chr3_2:66589284-66589303 None:intergenic 35.0%
ATAGGTAGTGTTGTCAATCA+CGG + chr3_2:66589294-66589313 None:intergenic 35.0%
ACAAGTTTAAGAAATGGCTC+AGG + chr3_2:66589523-66589542 None:intergenic 35.0%
AGCAGGACAAGTTTAAGAAA+TGG + chr3_2:66589529-66589548 None:intergenic 35.0%
CAGTATTATTCAAGATCTGG+GGG - chr3_2:66589601-66589620 Msa0418760:CDS 35.0%
TGTAAATTTGATCACACCAG+AGG - chr3_2:66589643-66589662 Msa0418760:CDS 35.0%
!!! GTTTTAGAGCTTAACTTCCT+TGG - chr3_2:66589685-66589704 Msa0418760:CDS 35.0%
CTTATACCAAACGAATAGGT+AGG + chr3_2:66589711-66589730 None:intergenic 35.0%
ACAACACGGCTAAAATTTCA+GGG + chr3_2:66589816-66589835 None:intergenic 35.0%
AACAACACGGCTAAAATTTC+AGG + chr3_2:66589817-66589836 None:intergenic 35.0%
CCCTATCATGAAAAACAACA+CGG + chr3_2:66589830-66589849 None:intergenic 35.0%
!!! CCGTGTTGTTTTTCATGATA+GGG - chr3_2:66589827-66589846 Msa0418760:CDS 35.0%
!!! TGTTGTTTTTCATGATAGGG+TGG - chr3_2:66589830-66589849 Msa0418760:CDS 35.0%
!!! GTTGTTTTTCATGATAGGGT+GGG - chr3_2:66589831-66589850 Msa0418760:CDS 35.0%
!! ATTTTCTGGTAGAAGACCAT+GGG + chr3_2:66590018-66590037 None:intergenic 35.0%
!! AATTTTCTGGTAGAAGACCA+TGG + chr3_2:66590019-66590038 None:intergenic 35.0%
ATCCATTCCAATCAGAACTT+CGG + chr3_2:66590099-66590118 None:intergenic 35.0%
TTCTGATTGGAATGGATATC+AGG - chr3_2:66590102-66590121 Msa0418760:five_prime_UTR 35.0%
GAGTGAGAGAAATAAGGTTG+TGG + chr3_2:66587906-66587925 None:intergenic 40.0%
AGGATGATGATTGGAAACAG+GGG + chr3_2:66588057-66588076 None:intergenic 40.0%
CAGGATGATGATTGGAAACA+GGG + chr3_2:66588058-66588077 None:intergenic 40.0%
TCAGGATGATGATTGGAAAC+AGG + chr3_2:66588059-66588078 None:intergenic 40.0%
GGTCAATTGATTGAGATCTG+AGG + chr3_2:66588084-66588103 None:intergenic 40.0%
CTGAAGCTCATCATCAAGTT+GGG + chr3_2:66588105-66588124 None:intergenic 40.0%
! TCTGAAGCTCATCATCAAGT+TGG + chr3_2:66588106-66588125 None:intergenic 40.0%
TGATGAGCTTCAGAACAAGT+TGG - chr3_2:66588112-66588131 Msa0418760:CDS 40.0%
! CAAGTTGGATTTGAAAGCTG+AGG - chr3_2:66588127-66588146 Msa0418760:intron 40.0%
TTGGATTTGAAAGCTGAGGA+TGG - chr3_2:66588131-66588150 Msa0418760:intron 40.0%
GAGGATGGAATTGAGGAAAA+AGG - chr3_2:66588146-66588165 Msa0418760:intron 40.0%
! GATGATGATGATGAAGTTGG+TGG - chr3_2:66588278-66588297 Msa0418760:CDS 40.0%
!! GATGATGATGATGGTTGGAA+TGG - chr3_2:66588386-66588405 Msa0418760:intron 40.0%
GGTTGGAATGGTGATTATGA+TGG - chr3_2:66588398-66588417 Msa0418760:intron 40.0%
GGAATGGTGATTATGATGGT+TGG - chr3_2:66588402-66588421 Msa0418760:intron 40.0%
GAGTGATTGGATTGAGAATG+AGG - chr3_2:66588442-66588461 Msa0418760:intron 40.0%
TGATTGGATTGAGAATGAGG+TGG - chr3_2:66588445-66588464 Msa0418760:intron 40.0%
! GTTGATGAAAGAAGCAATGG+TGG - chr3_2:66588479-66588498 Msa0418760:intron 40.0%
AAAGAACAGTCTTCAGCTTC+AGG + chr3_2:66588527-66588546 None:intergenic 40.0%
GCAAGTTTAATCACCCTGTT+TGG - chr3_2:66588585-66588604 Msa0418760:intron 40.0%
!! AAGGTTTTTAGAGAGAGGGA+AGG - chr3_2:66588843-66588862 Msa0418760:intron 40.0%
GGAAGGAGAAAGAGATGAAT+TGG - chr3_2:66588860-66588879 Msa0418760:intron 40.0%
AGGAGAAAGAGATGAATTGG+AGG - chr3_2:66588863-66588882 Msa0418760:intron 40.0%
TTTCCATGGGAGATTGTGTA+AGG - chr3_2:66589046-66589065 Msa0418760:intron 40.0%
TAACCTTACACAATCTCCCA+TGG + chr3_2:66589052-66589071 None:intergenic 40.0%
TGTGTAAGGTTAACTCTAGG+AGG - chr3_2:66589060-66589079 Msa0418760:intron 40.0%
TTGTCAAATAGCGGCTATAG+GGG - chr3_2:66589127-66589146 Msa0418760:intron 40.0%
AAACTTTCGTTGCTGTATCC+TGG - chr3_2:66589407-66589426 Msa0418760:CDS 40.0%
ATCTGCTGAAAACTTTCCTC+TGG + chr3_2:66589662-66589681 None:intergenic 40.0%
!! TCAGCATAGCTTGCTAAGTA+AGG + chr3_2:66589741-66589760 None:intergenic 40.0%
! CAGCTATCTTTTTCTGCTGT+CGG - chr3_2:66589782-66589801 Msa0418760:CDS 40.0%
!!! GCCGTGTTGTTTTTCATGAT+AGG - chr3_2:66589826-66589845 Msa0418760:CDS 40.0%
TGCTCCAAACTTACAAGAAC+CGG + chr3_2:66589882-66589901 None:intergenic 40.0%
TATGACTCCACTTCAGGATA+TGG - chr3_2:66589944-66589963 Msa0418760:CDS 40.0%
TCCACTTCAGGATATGGTAA+TGG - chr3_2:66589950-66589969 Msa0418760:CDS 40.0%
TCCATTACCATATCCTGAAG+TGG + chr3_2:66589954-66589973 None:intergenic 40.0%
!! TTTTCTGGTAGAAGACCATG+GGG + chr3_2:66590017-66590036 None:intergenic 40.0%
GGAGTCGGTGAAATTATGAT+TGG + chr3_2:66590064-66590083 None:intergenic 40.0%
!! ATCATAATTTCACCGACTCC+AGG - chr3_2:66590064-66590083 Msa0418760:five_prime_UTR 40.0%
!! TCATAATTTCACCGACTCCA+GGG - chr3_2:66590065-66590084 Msa0418760:five_prime_UTR 40.0%
TCCATTCCAATCAGAACTTC+GGG + chr3_2:66590098-66590117 None:intergenic 40.0%
GAGTGAGAGAAATAAGGTTG+TGG + chr3_2:66587906-66587925 None:intergenic 40.0%
AGGATGATGATTGGAAACAG+GGG + chr3_2:66588057-66588076 None:intergenic 40.0%
CAGGATGATGATTGGAAACA+GGG + chr3_2:66588058-66588077 None:intergenic 40.0%
TCAGGATGATGATTGGAAAC+AGG + chr3_2:66588059-66588078 None:intergenic 40.0%
GGTCAATTGATTGAGATCTG+AGG + chr3_2:66588084-66588103 None:intergenic 40.0%
CTGAAGCTCATCATCAAGTT+GGG + chr3_2:66588105-66588124 None:intergenic 40.0%
! TCTGAAGCTCATCATCAAGT+TGG + chr3_2:66588106-66588125 None:intergenic 40.0%
TGATGAGCTTCAGAACAAGT+TGG - chr3_2:66588112-66588131 Msa0418760:CDS 40.0%
! CAAGTTGGATTTGAAAGCTG+AGG - chr3_2:66588127-66588146 Msa0418760:intron 40.0%
TTGGATTTGAAAGCTGAGGA+TGG - chr3_2:66588131-66588150 Msa0418760:intron 40.0%
GAGGATGGAATTGAGGAAAA+AGG - chr3_2:66588146-66588165 Msa0418760:intron 40.0%
! GATGATGATGATGAAGTTGG+TGG - chr3_2:66588278-66588297 Msa0418760:CDS 40.0%
!! GATGATGATGATGGTTGGAA+TGG - chr3_2:66588386-66588405 Msa0418760:intron 40.0%
GGTTGGAATGGTGATTATGA+TGG - chr3_2:66588398-66588417 Msa0418760:intron 40.0%
GGAATGGTGATTATGATGGT+TGG - chr3_2:66588402-66588421 Msa0418760:intron 40.0%
GAGTGATTGGATTGAGAATG+AGG - chr3_2:66588442-66588461 Msa0418760:intron 40.0%
TGATTGGATTGAGAATGAGG+TGG - chr3_2:66588445-66588464 Msa0418760:intron 40.0%
! GTTGATGAAAGAAGCAATGG+TGG - chr3_2:66588479-66588498 Msa0418760:intron 40.0%
AAAGAACAGTCTTCAGCTTC+AGG + chr3_2:66588527-66588546 None:intergenic 40.0%
GCAAGTTTAATCACCCTGTT+TGG - chr3_2:66588585-66588604 Msa0418760:intron 40.0%
!! AAGGTTTTTAGAGAGAGGGA+AGG - chr3_2:66588843-66588862 Msa0418760:intron 40.0%
GGAAGGAGAAAGAGATGAAT+TGG - chr3_2:66588860-66588879 Msa0418760:intron 40.0%
AGGAGAAAGAGATGAATTGG+AGG - chr3_2:66588863-66588882 Msa0418760:intron 40.0%
TTTCCATGGGAGATTGTGTA+AGG - chr3_2:66589046-66589065 Msa0418760:intron 40.0%
TAACCTTACACAATCTCCCA+TGG + chr3_2:66589052-66589071 None:intergenic 40.0%
TGTGTAAGGTTAACTCTAGG+AGG - chr3_2:66589060-66589079 Msa0418760:intron 40.0%
TTGTCAAATAGCGGCTATAG+GGG - chr3_2:66589127-66589146 Msa0418760:intron 40.0%
AAACTTTCGTTGCTGTATCC+TGG - chr3_2:66589407-66589426 Msa0418760:CDS 40.0%
ATCTGCTGAAAACTTTCCTC+TGG + chr3_2:66589662-66589681 None:intergenic 40.0%
!! TCAGCATAGCTTGCTAAGTA+AGG + chr3_2:66589741-66589760 None:intergenic 40.0%
! CAGCTATCTTTTTCTGCTGT+CGG - chr3_2:66589782-66589801 Msa0418760:CDS 40.0%
!!! GCCGTGTTGTTTTTCATGAT+AGG - chr3_2:66589826-66589845 Msa0418760:CDS 40.0%
TGCTCCAAACTTACAAGAAC+CGG + chr3_2:66589882-66589901 None:intergenic 40.0%
TATGACTCCACTTCAGGATA+TGG - chr3_2:66589944-66589963 Msa0418760:CDS 40.0%
TCCACTTCAGGATATGGTAA+TGG - chr3_2:66589950-66589969 Msa0418760:CDS 40.0%
TCCATTACCATATCCTGAAG+TGG + chr3_2:66589954-66589973 None:intergenic 40.0%
!! TTTTCTGGTAGAAGACCATG+GGG + chr3_2:66590017-66590036 None:intergenic 40.0%
GGAGTCGGTGAAATTATGAT+TGG + chr3_2:66590064-66590083 None:intergenic 40.0%
!! ATCATAATTTCACCGACTCC+AGG - chr3_2:66590064-66590083 Msa0418760:five_prime_UTR 40.0%
!! TCATAATTTCACCGACTCCA+GGG - chr3_2:66590065-66590084 Msa0418760:five_prime_UTR 40.0%
TCCATTCCAATCAGAACTTC+GGG + chr3_2:66590098-66590117 None:intergenic 40.0%
GATTGTTGAGACGGTTCCAT+TGG + chr3_2:66587993-66588012 None:intergenic 45.0%
TGAGGGTTCAGGATGATGAT+TGG + chr3_2:66588066-66588085 None:intergenic 45.0%
TGATTGAGATCTGAGGGTTC+AGG + chr3_2:66588077-66588096 None:intergenic 45.0%
GAAAGCTGAGGATGGAATTG+AGG - chr3_2:66588139-66588158 Msa0418760:intron 45.0%
ATCTGCCACAGTATCTGAGA+AGG - chr3_2:66588343-66588362 Msa0418760:CDS 45.0%
TCTGCCACAGTATCTGAGAA+GGG - chr3_2:66588344-66588363 Msa0418760:CDS 45.0%
TTGTCCCTTCTCAGATACTG+TGG + chr3_2:66588351-66588370 None:intergenic 45.0%
ACAGTATCTGAGAAGGGACA+AGG - chr3_2:66588350-66588369 Msa0418760:CDS 45.0%
CAGTATCTGAGAAGGGACAA+GGG - chr3_2:66588351-66588370 Msa0418760:CDS 45.0%
ATTGAGAATGAGGTGGTGAG+TGG - chr3_2:66588452-66588471 Msa0418760:intron 45.0%
GAGCTGAACAGTATCCATTG+AGG - chr3_2:66588501-66588520 Msa0418760:intron 45.0%
CCTGGTTTCTTCTCCAAACA+GGG + chr3_2:66588601-66588620 None:intergenic 45.0%
ACCTGGTTTCTTCTCCAAAC+AGG + chr3_2:66588602-66588621 None:intergenic 45.0%
ATCAAGCCAGACAGAATGCA+AGG - chr3_2:66588890-66588909 Msa0418760:intron 45.0%
TCTCCCATGGAAAATCCCAT+GGG + chr3_2:66589039-66589058 None:intergenic 45.0%
ATCTCCCATGGAAAATCCCA+TGG + chr3_2:66589040-66589059 None:intergenic 45.0%
TGTCAAATAGCGGCTATAGG+GGG - chr3_2:66589128-66589147 Msa0418760:intron 45.0%
CAATATAGCAAAGCTAGGCC+AGG + chr3_2:66589428-66589447 None:intergenic 45.0%
AGATCTGGGGGTTGTAAGTT+TGG - chr3_2:66589613-66589632 Msa0418760:CDS 45.0%
TGGGGGTTGTAAGTTTGGAA+AGG - chr3_2:66589618-66589637 Msa0418760:CDS 45.0%
AACCGGTGCGCATGTAATAA+GGG + chr3_2:66589865-66589884 None:intergenic 45.0%
TCATACCCTCCAACAGATGT+AGG + chr3_2:66589929-66589948 None:intergenic 45.0%
! TTTCTGGTAGAAGACCATGG+GGG + chr3_2:66590016-66590035 None:intergenic 45.0%
!! CATAATTTCACCGACTCCAG+GGG - chr3_2:66590066-66590085 Msa0418760:five_prime_UTR 45.0%
CCATTCCAATCAGAACTTCG+GGG + chr3_2:66590097-66590116 None:intergenic 45.0%
GATTGTTGAGACGGTTCCAT+TGG + chr3_2:66587993-66588012 None:intergenic 45.0%
TGAGGGTTCAGGATGATGAT+TGG + chr3_2:66588066-66588085 None:intergenic 45.0%
TGATTGAGATCTGAGGGTTC+AGG + chr3_2:66588077-66588096 None:intergenic 45.0%
GAAAGCTGAGGATGGAATTG+AGG - chr3_2:66588139-66588158 Msa0418760:intron 45.0%
ATCTGCCACAGTATCTGAGA+AGG - chr3_2:66588343-66588362 Msa0418760:CDS 45.0%
TCTGCCACAGTATCTGAGAA+GGG - chr3_2:66588344-66588363 Msa0418760:CDS 45.0%
TTGTCCCTTCTCAGATACTG+TGG + chr3_2:66588351-66588370 None:intergenic 45.0%
ACAGTATCTGAGAAGGGACA+AGG - chr3_2:66588350-66588369 Msa0418760:CDS 45.0%
CAGTATCTGAGAAGGGACAA+GGG - chr3_2:66588351-66588370 Msa0418760:CDS 45.0%
ATTGAGAATGAGGTGGTGAG+TGG - chr3_2:66588452-66588471 Msa0418760:intron 45.0%
GAGCTGAACAGTATCCATTG+AGG - chr3_2:66588501-66588520 Msa0418760:intron 45.0%
CCTGGTTTCTTCTCCAAACA+GGG + chr3_2:66588601-66588620 None:intergenic 45.0%
ACCTGGTTTCTTCTCCAAAC+AGG + chr3_2:66588602-66588621 None:intergenic 45.0%
ATCAAGCCAGACAGAATGCA+AGG - chr3_2:66588890-66588909 Msa0418760:intron 45.0%
TCTCCCATGGAAAATCCCAT+GGG + chr3_2:66589039-66589058 None:intergenic 45.0%
ATCTCCCATGGAAAATCCCA+TGG + chr3_2:66589040-66589059 None:intergenic 45.0%
TGTCAAATAGCGGCTATAGG+GGG - chr3_2:66589128-66589147 Msa0418760:intron 45.0%
CAATATAGCAAAGCTAGGCC+AGG + chr3_2:66589428-66589447 None:intergenic 45.0%
AGATCTGGGGGTTGTAAGTT+TGG - chr3_2:66589613-66589632 Msa0418760:CDS 45.0%
TGGGGGTTGTAAGTTTGGAA+AGG - chr3_2:66589618-66589637 Msa0418760:CDS 45.0%
AACCGGTGCGCATGTAATAA+GGG + chr3_2:66589865-66589884 None:intergenic 45.0%
TCATACCCTCCAACAGATGT+AGG + chr3_2:66589929-66589948 None:intergenic 45.0%
! TTTCTGGTAGAAGACCATGG+GGG + chr3_2:66590016-66590035 None:intergenic 45.0%
!! CATAATTTCACCGACTCCAG+GGG - chr3_2:66590066-66590085 Msa0418760:five_prime_UTR 45.0%
CCATTCCAATCAGAACTTCG+GGG + chr3_2:66590097-66590116 None:intergenic 45.0%
!! ATTATTATTATTATTATTTG+TGG - chr3_2:66588671-66588690 Msa0418760:intron 5.0%
!! ATTATTATTATTATTATTTG+TGG - chr3_2:66588671-66588690 Msa0418760:intron 5.0%
TGGAGGGATTCCATCACCAA+TGG - chr3_2:66587974-66587993 Msa0418760:CDS 50.0%
TGAGACGGTTCCATTGGTGA+TGG + chr3_2:66587987-66588006 None:intergenic 50.0%
TCTTCAGCTTCAGGCCTCAA+TGG + chr3_2:66588518-66588537 None:intergenic 50.0%
CCCTGTTTGGAGAAGAAACC+AGG - chr3_2:66588598-66588617 Msa0418760:intron 50.0%
AATGCAAATTCCCCTGCCCA+TGG - chr3_2:66589020-66589039 Msa0418760:intron 50.0%
ATGCAAATTCCCCTGCCCAT+GGG - chr3_2:66589021-66589040 Msa0418760:intron 50.0%
ATGGAAAATCCCATGGGCAG+GGG + chr3_2:66589033-66589052 None:intergenic 50.0%
CATGGAAAATCCCATGGGCA+GGG + chr3_2:66589034-66589053 None:intergenic 50.0%
! CTGCCCATGGGATTTTCCAT+GGG - chr3_2:66589033-66589052 Msa0418760:intron 50.0%
ACTCGGTCGAACTCAAGCAT+AGG + chr3_2:66589312-66589331 None:intergenic 50.0%
CCAAACGAATAGGTAGGCCA+AGG + chr3_2:66589705-66589724 None:intergenic 50.0%
CCTTGGCCTACCTATTCGTT+TGG - chr3_2:66589702-66589721 Msa0418760:CDS 50.0%
CACGGCTAAAATTTCAGGGC+AGG + chr3_2:66589812-66589831 None:intergenic 50.0%
TGCCCTTATTACATGCGCAC+CGG - chr3_2:66589860-66589879 Msa0418760:CDS 50.0%
GAACCGGTGCGCATGTAATA+AGG + chr3_2:66589866-66589885 None:intergenic 50.0%
!! CGCACCGGTTCTTGTAAGTT+TGG - chr3_2:66589875-66589894 Msa0418760:CDS 50.0%
CATCCCGATCCTACATCTGT+TGG - chr3_2:66589917-66589936 Msa0418760:CDS 50.0%
CCTCCAACAGATGTAGGATC+GGG + chr3_2:66589923-66589942 None:intergenic 50.0%
CCCTCCAACAGATGTAGGAT+CGG + chr3_2:66589924-66589943 None:intergenic 50.0%
CCGATCCTACATCTGTTGGA+GGG - chr3_2:66589921-66589940 Msa0418760:CDS 50.0%
! CTTCTCCCCGAAGTTCTGAT+TGG - chr3_2:66590089-66590108 Msa0418760:five_prime_UTR 50.0%
! CCCCGAAGTTCTGATTGGAA+TGG - chr3_2:66590094-66590113 Msa0418760:five_prime_UTR 50.0%
TGGAGGGATTCCATCACCAA+TGG - chr3_2:66587974-66587993 Msa0418760:CDS 50.0%
TGAGACGGTTCCATTGGTGA+TGG + chr3_2:66587987-66588006 None:intergenic 50.0%
TCTTCAGCTTCAGGCCTCAA+TGG + chr3_2:66588518-66588537 None:intergenic 50.0%
CCCTGTTTGGAGAAGAAACC+AGG - chr3_2:66588598-66588617 Msa0418760:intron 50.0%
AATGCAAATTCCCCTGCCCA+TGG - chr3_2:66589020-66589039 Msa0418760:intron 50.0%
ATGCAAATTCCCCTGCCCAT+GGG - chr3_2:66589021-66589040 Msa0418760:intron 50.0%
ATGGAAAATCCCATGGGCAG+GGG + chr3_2:66589033-66589052 None:intergenic 50.0%
CATGGAAAATCCCATGGGCA+GGG + chr3_2:66589034-66589053 None:intergenic 50.0%
! CTGCCCATGGGATTTTCCAT+GGG - chr3_2:66589033-66589052 Msa0418760:intron 50.0%
ACTCGGTCGAACTCAAGCAT+AGG + chr3_2:66589312-66589331 None:intergenic 50.0%
CCAAACGAATAGGTAGGCCA+AGG + chr3_2:66589705-66589724 None:intergenic 50.0%
CCTTGGCCTACCTATTCGTT+TGG - chr3_2:66589702-66589721 Msa0418760:CDS 50.0%
CACGGCTAAAATTTCAGGGC+AGG + chr3_2:66589812-66589831 None:intergenic 50.0%
TGCCCTTATTACATGCGCAC+CGG - chr3_2:66589860-66589879 Msa0418760:CDS 50.0%
GAACCGGTGCGCATGTAATA+AGG + chr3_2:66589866-66589885 None:intergenic 50.0%
!! CGCACCGGTTCTTGTAAGTT+TGG - chr3_2:66589875-66589894 Msa0418760:CDS 50.0%
CATCCCGATCCTACATCTGT+TGG - chr3_2:66589917-66589936 Msa0418760:CDS 50.0%
CCTCCAACAGATGTAGGATC+GGG + chr3_2:66589923-66589942 None:intergenic 50.0%
CCCTCCAACAGATGTAGGAT+CGG + chr3_2:66589924-66589943 None:intergenic 50.0%
CCGATCCTACATCTGTTGGA+GGG - chr3_2:66589921-66589940 Msa0418760:CDS 50.0%
! CTTCTCCCCGAAGTTCTGAT+TGG - chr3_2:66590089-66590108 Msa0418760:five_prime_UTR 50.0%
! CCCCGAAGTTCTGATTGGAA+TGG - chr3_2:66590094-66590113 Msa0418760:five_prime_UTR 50.0%
CGACGCACAAGCCATAGTCA+AGG + chr3_2:66588982-66589001 None:intergenic 55.0%
CCATGGAAAATCCCATGGGC+AGG + chr3_2:66589035-66589054 None:intergenic 55.0%
! CCTGCCCATGGGATTTTCCA+TGG - chr3_2:66589032-66589051 Msa0418760:intron 55.0%
CCCGATCCTACATCTGTTGG+AGG - chr3_2:66589920-66589939 Msa0418760:CDS 55.0%
! GGAGGGTATGACTCCACTTC+AGG - chr3_2:66589938-66589957 Msa0418760:CDS 55.0%
CGACGCACAAGCCATAGTCA+AGG + chr3_2:66588982-66589001 None:intergenic 55.0%
CCATGGAAAATCCCATGGGC+AGG + chr3_2:66589035-66589054 None:intergenic 55.0%
! CCTGCCCATGGGATTTTCCA+TGG - chr3_2:66589032-66589051 Msa0418760:intron 55.0%
CCCGATCCTACATCTGTTGG+AGG - chr3_2:66589920-66589939 Msa0418760:CDS 55.0%
! GGAGGGTATGACTCCACTTC+AGG - chr3_2:66589938-66589957 Msa0418760:CDS 55.0%
CACAATCGTCCACACCCCCA+TGG - chr3_2:66589999-66590018 Msa0418760:five_prime_UTR 60.0%
GGTAGAAGACCATGGGGGTG+TGG + chr3_2:66590011-66590030 None:intergenic 60.0%
CACAATCGTCCACACCCCCA+TGG - chr3_2:66589999-66590018 Msa0418760:five_prime_UTR 60.0%
GGTAGAAGACCATGGGGGTG+TGG + chr3_2:66590011-66590030 None:intergenic 60.0%
GAACTTCGGGGAGAAGCCCC+TGG + chr3_2:66590085-66590104 None:intergenic 65.0%
GAACTTCGGGGAGAAGCCCC+TGG + chr3_2:66590085-66590104 None:intergenic 65.0%
CGGGGAGAAGCCCCTGGAGT+CGG + chr3_2:66590079-66590098 None:intergenic 70.0%
CGGGGAGAAGCCCCTGGAGT+CGG + chr3_2:66590079-66590098 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 66587831 66590159 66587831 ID=Msa0418760;Name=Msa0418760
chr3_2 mRNA 66587831 66590159 66587831 ID=Msa0418760-mRNA-1;Parent=Msa0418760;Name=Msa0418760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=162|1|0.75|1|1|1|4|0|374
chr3_2 exon 66587831 66588142 66587831 ID=Msa0418760-mRNA-1:exon:15348;Parent=Msa0418760-mRNA-1
chr3_2 exon 66588267 66588386 66588267 ID=Msa0418760-mRNA-1:exon:15347;Parent=Msa0418760-mRNA-1
chr3_2 exon 66589079 66589144 66589079 ID=Msa0418760-mRNA-1:exon:15346;Parent=Msa0418760-mRNA-1
chr3_2 exon 66589371 66590159 66589371 ID=Msa0418760-mRNA-1:exon:15345;Parent=Msa0418760-mRNA-1
chr3_2 five_prime_UTR 66589998 66590159 66589998 ID=Msa0418760-mRNA-1:five_prime_utr;Parent=Msa0418760-mRNA-1
chr3_2 CDS 66589371 66589997 66589371 ID=Msa0418760-mRNA-1:cds;Parent=Msa0418760-mRNA-1
chr3_2 CDS 66589079 66589144 66589079 ID=Msa0418760-mRNA-1:cds;Parent=Msa0418760-mRNA-1
chr3_2 CDS 66588267 66588386 66588267 ID=Msa0418760-mRNA-1:cds;Parent=Msa0418760-mRNA-1
chr3_2 CDS 66587831 66588142 66587831 ID=Msa0418760-mRNA-1:cds;Parent=Msa0418760-mRNA-1
Gene Sequence

>Msa0418760

ATGGAACCGTCTCAACAATCTCAATCACATTTGGCTTCTTCTCATCATGTTCAACATATTTCCCCTGTTTCCAATCATCATCCTGAACCCTCAGATCTCAATCAATTGACCCAACTTGATGATGAGCTTCAGAACAAGTTGGATTTGAAAGCTGAGGATGGAATTGAGGAAAAAGGTTCAAACTTTGATGTTGGTCATGAAGCTGCTGTTCTAGAATCTGATAAGGGACAAGAGTGCCATGATGATGATGATGATGAGAAAGTGAATGAGAAGGTGAGTACTGATGATGATGATGATGAAGTTGGTGGAATTGATGATAAAGGTTCAAACTTTGAAGTTGATGATGAAAAATCTGCCACAGTATCTGAGAAGGGACAAGGGTTTCATCAATTTGATGATGATGATGGTTGGAATGGTGATTATGATGGTTGGAATGATGATAATGTGGTGAGTGATTGGATTGAGAATGAGGTGGTGAGTGGATACGTTGATGAAAGAAGCAATGGTGGAGCTGAACAGTATCCATTGAGGCCTGAAGCTGAAGACTGTTCTTTTTATCTTAAGACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTTGGAGAAGAAACCAGGTTTTTAGAGAGAGGGAAGGAGAAAGAGATGAATTGGAGGAAAGATCAAGCCAGACAGAATGCAAGTATTATTCAAGATCTGGGGGTTGTAAGTTTGGAAAGGATTGTAAATTTGATCACACCAGAGGAAAGTTTTCAGCAGATCAAGTTTTAGAGCTTAACTTCCTTGGCCTACCTATTCGTTTGGGTGGGAAAGAATGCCCTTATTACATGCGCACCGGTTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACATCTGTTGGAGGGTATGACTCCACTTCAGGATATGGTAATGGAAGTTCTATTTCATTGCAAGACGTGTCACAATCGTCCACACCCCCATGGTCTTCTACCAGAAAATTCAATGAAACTGCTCCTTTTGTGCCAATCATAATTTCACCGACTCCAGGGGCTTCTCCCCGAAGTTCTGATTGGAATGGATATCAGGTAAAATCGATAGACTTGATGCTAATAACTATGTAA
Protein sequence

>Msa0418760

MEPSQQSQSHLASSHHVQHISPVSNHHPEPSDLNQLTQLDDELQNKLDLKAEDGIEEKGSNFDVGHEAAVLESDKGQECHDDDDDEKVNEKVSTDDDDDEVGGIDDKGSNFEVDDEKSATVSEKGQGFHQFDDDDGWNGDYDGWNDDNVVSDWIENEVVSGYVDERSNGGAEQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPVWRRNQVFREREGERDELEERSSQTECKYYSRSGGCKFGKDCKFDHTRGKFSADQVLELNFLGLPIRLGGKECPYYMRTGSCKFGANCKFNHPDPTSVGGYDSTSGYGNGSSISLQDVSQSSTPPWSSTRKFNETAPFVPIIISPTPGASPRSSDWNGYQVKSIDLMLITM*