AlfalfaGEDB | Msa0418620

M. sativa cultivar zhongmu-4 / Msa0418620

KEGG: -
GO: -
PFAM: PF00642.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418620	XP_013460953.1	87.234	517	24	7	1	481	1	511	0.0	892

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418620	sp\|Q9STM4\|C3H43_ARATH	42.857	427	168	10	63	449	32	422	1.05e-104	322

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418620	G8A2H7	87.234	517	24	7	1	481	1	511	0.0	892

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0418620	TF	C3H

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0418620	Msa0418640	0.882443	1.036944e-70	-8.615850e-47
Msa0418620	Msa0418760	0.829712	4.416014e-55	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418620	MtrunA17_Chr3g0116431	87.234	517	24	7	1	481	1	511	0.0	892
Msa0418620	MtrunA17_Chr4g0058011	51.167	557	168	21	17	481	25	569	8.20e-165	478
Msa0418620	MtrunA17_Chr7g0249221	36.778	329	152	8	174	448	27	353	1.78e-60	204
Msa0418620	MtrunA17_Chr7g0249221	37.302	126	59	4	138	255	242	355	1.36e-14	75.5
Msa0418620	MtrunA17_Chr7g0249221	42.857	77	43	1	173	249	71	146	4.06e-12	67.8
Msa0418620	MtrunA17_Chr5g0438891	35.347	331	147	11	174	453	36	350	4.41e-56	192
Msa0418620	MtrunA17_Chr5g0438891	38.095	126	71	2	215	340	256	374	4.95e-18	86.3
Msa0418620	MtrunA17_Chr5g0438891	46.250	80	37	2	172	249	76	151	6.95e-13	70.5
Msa0418620	MtrunA17_Chr2g0286151	33.628	339	160	8	172	446	42	379	4.74e-48	172
Msa0418620	MtrunA17_Chr4g0066941	31.714	350	163	11	172	456	41	379	8.67e-41	153

Showing 1 to 10 of 16 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418620	AT3G48440.1	42.857	427	168	10	63	449	32	422	1.07e-105	322
Msa0418620	AT5G63260.1	50.585	342	124	6	174	478	98	431	7.89e-103	315
Msa0418620	AT5G63260.1	41.463	82	43	2	171	250	328	406	7.21e-14	73.9
Msa0418620	AT5G63260.2	48.324	358	124	7	174	478	98	447	1.01e-98	305
Msa0418620	AT5G63260.2	41.463	82	43	2	171	250	344	422	8.14e-14	73.9
Msa0418620	AT3G02830.2	37.888	322	144	6	174	448	17	329	3.20e-63	210
Msa0418620	AT3G02830.2	40.659	91	39	2	174	257	251	333	1.38e-12	69.7
Msa0418620	AT3G02830.2	42.697	89	50	1	381	468	73	161	5.86e-12	67.8
Msa0418620	AT3G02830.1	37.888	322	144	6	174	448	37	349	3.52e-63	211
Msa0418620	AT3G02830.1	40.659	91	39	2	174	257	271	353	1.05e-12	70.1

Showing 1 to 10 of 64 entries

Previous1 2 3 4 5 6 7Next

Find 153 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCTTGCATTCTGTC+TGG	0.433659	3_2:-66394430	None:intergenic
AAACTCGGCTAGTATTGAGG+AGG	0.710931	3_2:+66396907	Msa0418620:CDS
AAAGAACAGTCTTCAGCTTC+AGG	0.362830	3_2:-66394059	None:intergenic
AAAGCTTATACCAAACGAAT+AGG	0.433676	3_2:-66395245	None:intergenic
AAAGGTTCAAACTTTGATGT+TGG	0.470206	3_2:+66393699	Msa0418620:CDS
AAATAACTTACAGGTCTCAA+AGG	0.588071	3_2:-66396679	None:intergenic
AACCGGTGCGCATGTAATAA+GGG	0.486519	3_2:-66395395	None:intergenic
AAGACTGGAACTTGCAAATT+TGG	0.144169	3_2:+66394089	Msa0418620:CDS
AAGATAATCTACAGCAGCTG+AGG	0.586171	3_2:-66397137	None:intergenic
AAGATGAAAATCACAAAATA+TGG	0.299144	3_2:-66397026	None:intergenic

Showing 1 to 10 of 153 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTTACATCATTGTAGTAGT+TGG	-	chr3_2:66393356-66393375	None:intergenic	30.0%
TTGAAAGAGTGAGAGAAATA+AGG	-	chr3_2:66393447-66393466	None:intergenic	30.0%
TCAACAATCTCAATCACATT+TGG	+	chr3_2:66393539-66393558	Msa0418620:CDS	30.0%
AAAGGTTCAAACTTTGATGT+TGG	+	chr3_2:66393699-66393718	Msa0418620:CDS	30.0%
TGTTGTCAAATAGACTATAG+CGG	+	chr3_2:66394756-66394775	Msa0418620:intron	30.0%
TACTGTCATGTCATAACATT+AGG	-	chr3_2:66395119-66395138	None:intergenic	30.0%
TGACAGTATTATTCAAGATC+TGG	+	chr3_2:66395131-66395150	Msa0418620:intron	30.0%
GACAGTATTATTCAAGATCT+GGG	+	chr3_2:66395132-66395151	Msa0418620:intron	30.0%
ACAGTATTATTCAAGATCTG+GGG	+	chr3_2:66395133-66395152	Msa0418620:intron	30.0%
AAAGCTTATACCAAACGAAT+AGG	-	chr3_2:66395248-66395267	None:intergenic	30.0%

Showing 1 to 10 of 303 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	66393251	66397400	66393251	ID=Msa0418620;Name=Msa0418620
chr3_2	mRNA	66393251	66397400	66393251	ID=Msa0418620-mRNA-1;Parent=Msa0418620;Name=Msa0418620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=277\|0.83\|0.71\|1\|1\|1\|7\|433\|482
chr3_2	exon	66393251	66394154	66393251	ID=Msa0418620-mRNA-1:exon:15176;Parent=Msa0418620-mRNA-1
chr3_2	exon	66394380	66394445	66394380	ID=Msa0418620-mRNA-1:exon:15177;Parent=Msa0418620-mRNA-1
chr3_2	exon	66395137	66395256	66395137	ID=Msa0418620-mRNA-1:exon:15178;Parent=Msa0418620-mRNA-1
chr3_2	exon	66395381	66395656	66395381	ID=Msa0418620-mRNA-1:exon:15179;Parent=Msa0418620-mRNA-1
chr3_2	exon	66396422	66396472	66396422	ID=Msa0418620-mRNA-1:exon:15180;Parent=Msa0418620-mRNA-1
chr3_2	exon	66396571	66396690	66396571	ID=Msa0418620-mRNA-1:exon:15181;Parent=Msa0418620-mRNA-1
chr3_2	exon	66396779	66397400	66396779	ID=Msa0418620-mRNA-1:exon:15182;Parent=Msa0418620-mRNA-1
chr3_2	five_prime_UTR	66393251	66393527	66393251	ID=Msa0418620-mRNA-1:five_prime_utr;Parent=Msa0418620-mRNA-1
chr3_2	CDS	66393528	66394154	66393528	ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2	CDS	66394380	66394445	66394380	ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2	CDS	66395137	66395256	66395137	ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2	CDS	66395381	66395656	66395381	ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2	CDS	66396422	66396472	66396422	ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2	CDS	66396571	66396690	66396571	ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2	CDS	66396779	66396967	66396779	ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2	three_prime_UTR	66396968	66397400	66396968	ID=Msa0418620-mRNA-1:three_prime_utr;Parent=Msa0418620-mRNA-1

Gene Sequence

>Msa0418620

ATGGAACCGTCTCAACAATCTCAATCACATTTGGCTTCTTCTCATCATGTTCAACATATTTCCCCTGTTTCCAATCATCATCCTGAACCCTCAGATCTCAATCAATTGACCCAACTTGATGATGAGCTTCAGAACAAGTTGGATTTGAAAGCTGAGGATGGAATTGAGGAAAAAGGTTCAAACTTTGATGTTGGTCATGAAGCTGCTGTTCTAGAATCTGATAAGGGACAAGAGTGCCATGATGATGATGATGATGAGAAAGTGAATGAGAAGGTGAGTACTGATGATGATGATGATGAAGTTGGTGGAATTGATGATAAAGGTTCAAACTTTGAAGTTGATGATGAAAAATCTGCCACAGTATCTGAGAAGGGACAAGGGTTTCATCAATTTGATGATGATGATGGTTGGAATGGTGATTATGATGGTTGGAATGATGATAATGTGGTGAGTGATTGGATTGAGAATGAGGTGGTGAGTGGATACGTTGATGAAAGAAGCAATGGTGGAGCTGAACAGTATCCATTGAGGCCTGAAGCTGAAGACTGTTCTTTTTATCTTAAGACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTTGGAGAAGAAACCAGGTTTTTAGAGAGAGGGAAGGAGAAAGAGATGAATTGGAGGAAAGATCAAGCCAGACAGAATGCAAGTATTATTCAAGATCTGGGGGTTGTAAGTTTGGAAAGGATTGTAAATTTGATCACACCAGAGGAAAGTTTTCAGCAGATCAAGTTTTAGAGCTTAACTTCCTTGGCCTACCTATTCGTTTGGGTGGGAAAGAATGCCCTTATTACATGCGCACCGGTTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACATCTGTTGGAGGGTATGACTCCACTTCAGGATATGGTAATGGAAGTTCTATTTCATTGCAAGACGTGTCACAATCGTCCACACCCCCATGGTCTTCTACCAGAAAATTCAATGAAACTGCTCCTTTTGTGCCAATCATAATTTCACCGACTCCAGGGGCTTCTCCCCGAAGTTCTGATTGGAATGGATATCAGGCACCTTTCTATTTTTCTGAGAGGAGTATGCATCCACCTTCACCATATGCCTTTCTTCTTAAAACCGGGGATTGCAAATTTAAATCCCATTGCAAATTTCATCATCCAAAGAACCGGATTACAAAATTACCTCCATGCAACCTAAGTGACAAGGGTCTGCCTTTGAGACCTGGCCAGAATGTGTGCACTCATTACAACCGATACGGAATTTGCAAATTTGGACCAGCTTGTAAGTATGACCACCCGATAAACCTACCGCCCCCAACTATGCCTGGACGTTATCAACAATCCTCTCACACAAACTCGGCTAGTATTGAGGAGGCTGGAAGTGGAGGAGCTAGTGATGCAACAATTTTATAG

Protein sequence

>Msa0418620

MEPSQQSQSHLASSHHVQHISPVSNHHPEPSDLNQLTQLDDELQNKLDLKAEDGIEEKGSNFDVGHEAAVLESDKGQECHDDDDDEKVNEKVSTDDDDDEVGGIDDKGSNFEVDDEKSATVSEKGQGFHQFDDDDGWNGDYDGWNDDNVVSDWIENEVVSGYVDERSNGGAEQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPVWRRNQVFREREGERDELEERSSQTECKYYSRSGGCKFGKDCKFDHTRGKFSADQVLELNFLGLPIRLGGKECPYYMRTGSCKFGANCKFNHPDPTSVGGYDSTSGYGNGSSISLQDVSQSSTPPWSSTRKFNETAPFVPIIISPTPGASPRSSDWNGYQAPFYFSERSMHPPSPYAFLLKTGDCKFKSHCKFHHPKNRITKLPPCNLSDKGLPLRPGQNVCTHYNRYGICKFGPACKYDHPINLPPPTMPGRYQQSSHTNSASIEEAGSGGASDATIL*