AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0418620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418620 MtrunA17_Chr3g0116431 87.234 517 24 7 1 481 1 511 0.0 892
Msa0418620 MtrunA17_Chr4g0058011 51.167 557 168 21 17 481 25 569 8.20e-165 478
Msa0418620 MtrunA17_Chr7g0249221 36.778 329 152 8 174 448 27 353 1.78e-60 204
Msa0418620 MtrunA17_Chr7g0249221 37.302 126 59 4 138 255 242 355 1.36e-14 75.5
Msa0418620 MtrunA17_Chr7g0249221 42.857 77 43 1 173 249 71 146 4.06e-12 67.8
Msa0418620 MtrunA17_Chr5g0438891 35.347 331 147 11 174 453 36 350 4.41e-56 192
Msa0418620 MtrunA17_Chr5g0438891 38.095 126 71 2 215 340 256 374 4.95e-18 86.3
Msa0418620 MtrunA17_Chr5g0438891 46.250 80 37 2 172 249 76 151 6.95e-13 70.5
Msa0418620 MtrunA17_Chr2g0286151 33.628 339 160 8 172 446 42 379 4.74e-48 172
Msa0418620 MtrunA17_Chr4g0066941 31.714 350 163 11 172 456 41 379 8.67e-41 153
Msa0418620 MtrunA17_Chr4g0066941 58.462 65 25 1 383 447 345 407 1.35e-17 85.5
Msa0418620 MtrunA17_Chr4g0066941 44.737 76 40 2 221 296 332 405 4.01e-14 74.7
Msa0418620 MtrunA17_Chr4g0066941 40.506 79 42 2 175 252 333 407 9.61e-11 63.9
Msa0418620 MtrunA17_Chr8g0356241 30.295 373 177 11 140 472 165 494 1.01e-39 150
Msa0418620 MtrunA17_Chr8g0356241 32.597 181 66 6 268 448 139 263 2.10e-14 75.5
Msa0418620 MtrunA17_Chr1g0195891 30.189 318 145 9 167 420 39 343 3.82e-36 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418620 AT3G48440.1 42.857 427 168 10 63 449 32 422 1.07e-105 322
Msa0418620 AT5G63260.1 50.585 342 124 6 174 478 98 431 7.89e-103 315
Msa0418620 AT5G63260.1 41.463 82 43 2 171 250 328 406 7.21e-14 73.9
Msa0418620 AT5G63260.2 48.324 358 124 7 174 478 98 447 1.01e-98 305
Msa0418620 AT5G63260.2 41.463 82 43 2 171 250 344 422 8.14e-14 73.9
Msa0418620 AT3G02830.2 37.888 322 144 6 174 448 17 329 3.20e-63 210
Msa0418620 AT3G02830.2 40.659 91 39 2 174 257 251 333 1.38e-12 69.7
Msa0418620 AT3G02830.2 42.697 89 50 1 381 468 73 161 5.86e-12 67.8
Msa0418620 AT3G02830.1 37.888 322 144 6 174 448 37 349 3.52e-63 211
Msa0418620 AT3G02830.1 40.659 91 39 2 174 257 271 353 1.05e-12 70.1
Msa0418620 AT3G02830.1 42.697 89 50 1 381 468 93 181 6.16e-12 67.8
Msa0418620 AT5G16540.3 41.812 287 148 7 174 448 18 297 1.21e-62 208
Msa0418620 AT5G16540.3 33.158 190 58 6 173 296 62 248 1.82e-17 84.3
Msa0418620 AT5G16540.3 41.573 89 37 2 174 255 219 299 2.84e-12 68.6
Msa0418620 AT5G16540.1 41.812 287 148 7 174 448 39 318 1.26e-62 208
Msa0418620 AT5G16540.1 33.158 190 58 6 173 296 83 269 1.72e-17 84.3
Msa0418620 AT5G16540.1 41.573 89 37 2 174 255 240 320 2.73e-12 68.6
Msa0418620 AT1G04990.1 36.336 333 169 10 151 453 21 340 2.27e-60 203
Msa0418620 AT1G04990.6 36.336 333 169 10 151 453 21 340 2.27e-60 203
Msa0418620 AT1G04990.2 36.336 333 169 10 151 453 21 340 2.27e-60 203
Msa0418620 AT2G32930.2 34.925 335 171 9 152 450 19 342 2.54e-56 194
Msa0418620 AT2G32930.3 35.185 324 163 9 163 450 3 315 2.20e-55 191
Msa0418620 AT5G16540.2 39.721 287 147 8 174 448 39 311 2.60e-55 189
Msa0418620 AT5G16540.2 33.158 190 58 6 173 296 83 269 1.68e-17 84.3
Msa0418620 AT5G16540.2 43.902 82 38 1 174 255 240 313 1.91e-13 72.0
Msa0418620 AT5G18550.3 36.585 328 150 10 172 444 14 338 2.82e-55 191
Msa0418620 AT5G18550.3 46.154 65 35 0 381 445 27 91 5.95e-12 67.8
Msa0418620 AT5G18550.1 36.585 328 150 10 172 444 46 370 3.22e-55 191
Msa0418620 AT5G18550.1 46.154 65 35 0 381 445 59 123 3.81e-12 68.6
Msa0418620 AT5G18550.4 36.585 328 150 10 172 444 46 370 4.13e-55 191
Msa0418620 AT5G18550.4 46.154 65 35 0 381 445 59 123 4.42e-12 68.6
Msa0418620 AT2G47850.1 33.520 358 164 9 152 447 18 363 7.12e-53 185
Msa0418620 AT2G47850.1 45.455 88 42 2 368 451 87 172 5.13e-14 74.7
Msa0418620 AT2G47850.1 40.000 90 39 2 172 254 284 365 1.05e-12 70.5
Msa0418620 AT2G47850.3 33.520 358 164 9 152 447 18 363 7.12e-53 185
Msa0418620 AT2G47850.3 45.455 88 42 2 368 451 87 172 5.13e-14 74.7
Msa0418620 AT2G47850.3 40.000 90 39 2 172 254 284 365 1.05e-12 70.5
Msa0418620 AT2G32930.1 34.627 335 168 10 152 450 19 338 9.06e-53 184
Msa0418620 AT1G04990.5 33.837 331 160 10 151 453 21 320 4.87e-51 178
Msa0418620 AT5G18550.2 34.146 328 145 10 172 444 46 357 3.70e-48 172
Msa0418620 AT5G18550.2 46.154 65 35 0 381 445 59 123 3.16e-12 68.9
Msa0418620 AT5G16540.4 39.768 259 137 7 174 420 18 269 2.69e-46 162
Msa0418620 AT5G16540.4 33.158 190 58 6 173 296 62 248 1.71e-17 82.8
Msa0418620 AT5G16540.4 46.154 65 35 0 381 445 74 138 3.07e-12 67.4
Msa0418620 AT3G12680.1 31.686 344 155 9 140 445 198 499 6.39e-46 167
Msa0418620 AT3G12680.1 33.333 183 78 3 175 315 338 518 1.02e-25 110
Msa0418620 AT3G12680.1 32.065 184 68 6 268 449 172 300 2.38e-14 75.9
Msa0418620 AT1G04990.3 35.409 257 127 9 227 453 12 259 1.19e-41 151
Msa0418620 AT1G04990.3 42.105 76 44 0 221 296 177 252 2.11e-12 68.6
Msa0418620 AT3G06410.1 34.768 302 164 10 172 451 49 339 7.99e-41 152
Msa0418620 AT3G06410.1 54.688 64 29 0 381 444 315 378 1.09e-17 85.9
Msa0418620 AT3G06410.1 39.474 76 46 0 220 295 303 378 1.86e-13 72.8
Msa0418620 AT3G06410.1 34.884 86 49 2 167 249 297 378 1.44e-11 67.0
Msa0418620 AT2G47850.2 31.579 304 127 9 219 447 40 337 3.63e-34 134
Msa0418620 AT2G47850.2 27.564 312 180 12 152 451 18 295 5.15e-22 99.0
Msa0418620 AT2G47850.2 41.935 93 44 1 204 296 253 335 4.48e-17 84.0
Msa0418620 AT2G47850.2 40.000 90 39 2 172 254 258 339 6.35e-13 70.9
Msa0418620 AT1G04990.4 32.157 255 118 9 227 453 12 239 1.67e-32 126
Msa0418620 AT2G47850.4 33.871 248 94 7 260 447 4 241 7.43e-29 117
Msa0418620 AT2G47850.4 41.935 93 44 1 204 296 157 239 1.40e-17 84.3
Msa0418620 AT2G47850.4 40.000 90 39 2 172 254 162 243 2.26e-13 71.6
Msa0418620 AT1G48195.1 54.545 77 33 1 368 444 6 80 6.94e-23 92.8
Msa0418620 AT1G48195.1 38.961 77 47 0 219 295 4 80 1.37e-13 66.6
Msa0418620 AT1G48195.1 41.250 80 42 2 172 249 4 80 2.64e-11 60.1

Find 153 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATACGGAATTTGCAAATT+TGG 0.131640 3_2:+66396806 Msa0418620:CDS
AAGACTGGAACTTGCAAATT+TGG 0.144169 3_2:+66394089 Msa0418620:CDS
GAACCGGTGCGCATGTAATA+AGG 0.235921 3_2:-66395396 None:intergenic
TTGAAAGAGTGAGAGAAATA+AGG 0.254892 3_2:-66393444 None:intergenic
CAAAAGAACTGCTCAATTAA+TGG 0.266115 3_2:+66397292 Msa0418620:three_prime_UTR
TTCCAGTTTGTTATCTCTCT+TGG 0.278370 3_2:+66397164 Msa0418620:three_prime_UTR
AAGATGAAAATCACAAAATA+TGG 0.299144 3_2:-66397026 None:intergenic
AGCTGCTGTAGATTATCTTT+TGG 0.303041 3_2:+66397141 Msa0418620:three_prime_UTR
CGCACCGGTTCTTGTAAGTT+TGG 0.307678 3_2:+66395408 Msa0418620:CDS
GGAAGGAGAAAGAGATGAAT+TGG 0.321101 3_2:+66394394 Msa0418620:CDS
TGTAATGAGTGCACACATTC+TGG 0.330211 3_2:-66396781 None:intergenic
TCCATTCCAATCAGAACTTC+GGG 0.344770 3_2:-66395628 None:intergenic
ACCTGGTTTCTTCTCCAAAC+AGG 0.348538 3_2:-66394134 None:intergenic
CATCATTGTAGTAGTTGGTT+TGG 0.351046 3_2:-66393348 None:intergenic
AAAGAACAGTCTTCAGCTTC+AGG 0.362830 3_2:-66394059 None:intergenic
TATGACTCCACTTCAGGATA+TGG 0.363041 3_2:+66395477 Msa0418620:CDS
TCAACAATCTCAATCACATT+TGG 0.369732 3_2:+66393539 Msa0418620:CDS
GCAAGTTTAATCACCCTGTT+TGG 0.377149 3_2:+66394120 Msa0418620:CDS
ACTAAAGTTCAACATTTCAT+TGG 0.377225 3_2:-66397264 None:intergenic
TGACAGTATTATTCAAGATC+TGG 0.378857 3_2:+66395131 Msa0418620:intron
TTCTGATTGGAATGGATATC+AGG 0.393291 3_2:+66395635 Msa0418620:CDS
TGCTCCAAACTTACAAGAAC+CGG 0.396802 3_2:-66395412 None:intergenic
GGAGGGTATGACTCCACTTC+AGG 0.396887 3_2:+66395471 Msa0418620:CDS
TATCTCTCTTGGATTAGTAT+TGG 0.397975 3_2:+66397175 Msa0418620:three_prime_UTR
ATGCAGTTTCTTCTTAAAAC+CGG 0.398311 3_2:+66396565 Msa0418620:intron
TGTTACATCATTGTAGTAGT+TGG 0.398909 3_2:-66393353 None:intergenic
CCTTGGCCTACCTATTCGTT+TGG 0.402338 3_2:+66395235 Msa0418620:CDS
TCAATCAAATTTCAACTACT+AGG 0.403584 3_2:+66393470 Msa0418620:five_prime_UTR
GATAACGTCCAGGCATAGTT+GGG 0.405460 3_2:-66396868 None:intergenic
GTTGGTGGAATTGATGATAA+AGG 0.406722 3_2:+66393828 Msa0418620:CDS
TGATTGAGATCTGAGGGTTC+AGG 0.413394 3_2:-66393609 None:intergenic
CTTCTCCCCGAAGTTCTGAT+TGG 0.413563 3_2:+66395622 Msa0418620:CDS
ATTACTTTATTTAACTTCAC+TGG 0.413927 3_2:+66397056 Msa0418620:three_prime_UTR
TCAGGATGATGATTGGAAAC+AGG 0.426300 3_2:-66393591 None:intergenic
GAGGATGGAATTGAGGAAAA+AGG 0.428119 3_2:+66393681 Msa0418620:CDS
GCTGGATTGTTCACGGCATA+TGG 0.429292 3_2:-66396464 None:intergenic
TGCTGTTCTAGAATCTGATA+AGG 0.429800 3_2:+66393731 Msa0418620:CDS
AAAATACCTTGCATTCTGTC+TGG 0.433659 3_2:-66394430 None:intergenic
AAAGCTTATACCAAACGAAT+AGG 0.433676 3_2:-66395245 None:intergenic
ATCTGCTGAAAACTTTCCTC+TGG 0.440653 3_2:-66395192 None:intergenic
AGTGAGAGAAATAAGGTTGT+GGG 0.440988 3_2:-66393437 None:intergenic
CAAAAGGCTTGTGCCACATC+AGG 0.446756 3_2:-66397084 None:intergenic
AATTTCATCATCCAAAGAAC+CGG 0.447322 3_2:+66396614 Msa0418620:CDS
CAATCAAATTTCAACTACTA+GGG 0.452100 3_2:+66393471 Msa0418620:five_prime_UTR
TGAGGGTTCAGGATGATGAT+TGG 0.453154 3_2:-66393598 None:intergenic
ATGATAATGTGGTGAGTGAT+TGG 0.454378 3_2:+66393964 Msa0418620:CDS
GATTGTTGCGATGGCATGGC+AGG 0.456960 3_2:-66393291 None:intergenic
AAGGCAGACCCTTGTCACTT+AGG 0.458239 3_2:-66396660 None:intergenic
ATCATAATTTCACCGACTCC+AGG 0.458700 3_2:+66395597 Msa0418620:CDS
TCTTCAGCTTCAGGCCTCAA+TGG 0.459779 3_2:-66394050 None:intergenic
GAAAGCTGAGGATGGAATTG+AGG 0.460065 3_2:+66393674 Msa0418620:CDS
ATATATAGCTATTCCGCAAA+AGG 0.460385 3_2:-66397100 None:intergenic
CCCTTGTCACTTAGGTTGCA+TGG 0.470112 3_2:-66396652 None:intergenic
AAAGGTTCAAACTTTGATGT+TGG 0.470206 3_2:+66393699 Msa0418620:CDS
ATCCATTCCAATCAGAACTT+CGG 0.470941 3_2:-66395629 None:intergenic
GACAGTATTATTCAAGATCT+GGG 0.472642 3_2:+66395132 Msa0418620:intron
CATCAATTTGATGATGATGA+TGG 0.474092 3_2:+66393912 Msa0418620:CDS
GAAATTATGATTGGCACAAA+AGG 0.475046 3_2:-66395585 None:intergenic
GAACTTCGGGGAGAAGCCCC+TGG 0.478122 3_2:-66395615 None:intergenic
AACCGGTGCGCATGTAATAA+GGG 0.486519 3_2:-66395395 None:intergenic
GAGTGAGAGAAATAAGGTTG+TGG 0.488683 3_2:-66393438 None:intergenic
TCTGAAGCTCATCATCAAGT+TGG 0.490964 3_2:-66393638 None:intergenic
CCCGATCCTACATCTGTTGG+AGG 0.492082 3_2:+66395453 Msa0418620:CDS
CTGAAGCTCATCATCAAGTT+GGG 0.493894 3_2:-66393637 None:intergenic
AGTATTGAGGAGGCTGGAAG+TGG 0.494418 3_2:+66396917 Msa0418620:CDS
CATCCCGATCCTACATCTGT+TGG 0.500007 3_2:+66395450 Msa0418620:CDS
TGCAGTTTCTTCTTAAAACC+GGG 0.500388 3_2:+66396566 Msa0418620:intron
ATCCAAGAGAGATAACAAAC+TGG 0.502672 3_2:-66397166 None:intergenic
GGTTGGAATGGTGATTATGA+TGG 0.504782 3_2:+66393933 Msa0418620:CDS
CCCTGTTTGGAGAAGAAACC+AGG 0.508022 3_2:+66394133 Msa0418620:CDS
GGATTTAAATTTGCAATCCC+CGG 0.510053 3_2:-66396584 None:intergenic
CAAATTTGCAAATTCCGTAT+CGG 0.515996 3_2:-66396805 None:intergenic
TGATAACGTCCAGGCATAGT+TGG 0.516040 3_2:-66396869 None:intergenic
GTCAATTGATTGAGATCTGA+GGG 0.519840 3_2:-66393615 None:intergenic
GGAATGGTGATTATGATGGT+TGG 0.520805 3_2:+66393937 Msa0418620:CDS
CACAAACTCGGCTAGTATTG+AGG 0.521153 3_2:+66396904 Msa0418620:CDS
GGAGTCGGTGAAATTATGAT+TGG 0.524224 3_2:-66395594 None:intergenic
CCCTCCAACAGATGTAGGAT+CGG 0.524928 3_2:-66395454 None:intergenic
AGGAGAAAGAGATGAATTGG+AGG 0.525657 3_2:+66394397 Msa0418620:CDS
TGATGAGCTTCAGAACAAGT+TGG 0.527576 3_2:+66393647 Msa0418620:CDS
TCCACTTCAGGATATGGTAA+TGG 0.528389 3_2:+66395483 Msa0418620:CDS
TGGATGATGAAATTTGCAAT+GGG 0.532458 3_2:-66396605 None:intergenic
TCGGCTAGTATTGAGGAGGC+TGG 0.532916 3_2:+66396911 Msa0418620:CDS
ATTGGATTATATAGTTGTGC+TGG 0.534752 3_2:+66397193 Msa0418620:three_prime_UTR
CCCCGAAGTTCTGATTGGAA+TGG 0.535856 3_2:+66395627 Msa0418620:CDS
CCTCCAACAGATGTAGGATC+GGG 0.539485 3_2:-66395453 None:intergenic
TCATAATTTCACCGACTCCA+GGG 0.539855 3_2:+66395598 Msa0418620:CDS
AATTTGATGATGATGATGGT+TGG 0.543460 3_2:+66393916 Msa0418620:CDS
TTGGATGATGAAATTTGCAA+TGG 0.544786 3_2:-66396606 None:intergenic
TTGGATTTGAAAGCTGAGGA+TGG 0.550068 3_2:+66393666 Msa0418620:CDS
CGGGGAGAAGCCCCTGGAGT+CGG 0.550896 3_2:-66395609 None:intergenic
CAGGATGATGATTGGAAACA+GGG 0.550924 3_2:-66393590 None:intergenic
GCTGTTCTAGAATCTGATAA+GGG 0.555394 3_2:+66393732 Msa0418620:CDS
TGCACTCATTACAACCGATA+CGG 0.555974 3_2:+66396791 Msa0418620:CDS
TCATACCCTCCAACAGATGT+AGG 0.560380 3_2:-66395459 None:intergenic
TGCCCTTATTACATGCGCAC+CGG 0.565218 3_2:+66395393 Msa0418620:CDS
GGGGCGGTAGGTTTATCGGG+TGG 0.565245 3_2:-66396847 None:intergenic
ATTGAGGAGGCTGGAAGTGG+AGG 0.565408 3_2:+66396920 Msa0418620:CDS
TCCATTACCATATCCTGAAG+TGG 0.570036 3_2:-66395484 None:intergenic
ACAATCCTCTCACACAAACT+CGG 0.577005 3_2:+66396892 Msa0418620:CDS
CTTATACCAAACGAATAGGT+AGG 0.578718 3_2:-66395241 None:intergenic
ATCTGCCACAGTATCTGAGA+AGG 0.580494 3_2:+66393878 Msa0418620:CDS
CCTGGTTTCTTCTCCAAACA+GGG 0.582322 3_2:-66394133 None:intergenic
GATTGTTGAGACGGTTCCAT+TGG 0.582618 3_2:-66393525 None:intergenic
CAAGTTGGATTTGAAAGCTG+AGG 0.582725 3_2:+66393662 Msa0418620:CDS
ACTAGCCGAGTTTGTGTGAG+AGG 0.582786 3_2:-66396897 None:intergenic
TGAAAATCACAAAATATGGA+TGG 0.582977 3_2:-66397022 None:intergenic
TGAGACGGTTCCATTGGTGA+TGG 0.584359 3_2:-66393519 None:intergenic
AAGATAATCTACAGCAGCTG+AGG 0.586171 3_2:-66397137 None:intergenic
CATAATTTCACCGACTCCAG+GGG 0.587604 3_2:+66395599 Msa0418620:CDS
AAATAACTTACAGGTCTCAA+AGG 0.588071 3_2:-66396679 None:intergenic
GGTCAATTGATTGAGATCTG+AGG 0.589485 3_2:-66393616 None:intergenic
GAGTGATTGGATTGAGAATG+AGG 0.592997 3_2:+66393977 Msa0418620:CDS
ACAGTATCTGAGAAGGGACA+AGG 0.594511 3_2:+66393885 Msa0418620:CDS
ATCAAGCCAGACAGAATGCA+AGG 0.596249 3_2:+66394424 Msa0418620:CDS
TGGAGGGATTCCATCACCAA+TGG 0.596967 3_2:+66393509 Msa0418620:exon
GAGGATTGTTGATAACGTCC+AGG 0.597566 3_2:-66396878 None:intergenic
GATGATGATGATGGTTGGAA+TGG 0.597808 3_2:+66393921 Msa0418620:CDS
TGTGATTGAGATTGTTGAGA+CGG 0.598910 3_2:-66393534 None:intergenic
GGGTGGTCATACTTACAAGC+TGG 0.604093 3_2:-66396830 None:intergenic
ACAGTATTATTCAAGATCTG+GGG 0.604261 3_2:+66395133 Msa0418620:intron
GATGATGATGATGAAGTTGG+TGG 0.608228 3_2:+66393813 Msa0418620:CDS
GATGATGTGGATTGTTGCGA+TGG 0.613098 3_2:-66393300 None:intergenic
CAGTATTATTCAAGATCTGG+GGG 0.613736 3_2:+66395134 Msa0418620:intron
AATTAATTAATGCGATGATG+TGG 0.613900 3_2:-66393313 None:intergenic
CCAAACGAATAGGTAGGCCA+AGG 0.617276 3_2:-66395235 None:intergenic
ATAACGTCCAGGCATAGTTG+GGG 0.618044 3_2:-66396867 None:intergenic
TGTGGATTGTTGCGATGGCA+TGG 0.625366 3_2:-66393295 None:intergenic
ATTGTTGCGATGGCATGGCA+GGG 0.625670 3_2:-66393290 None:intergenic
TTCACTGGTTATGCCTGATG+TGG 0.629637 3_2:+66397071 Msa0418620:three_prime_UTR
ATTGAGAATGAGGTGGTGAG+TGG 0.632045 3_2:+66393987 Msa0418620:CDS
TGTAAATTTGATCACACCAG+AGG 0.632238 3_2:+66395176 Msa0418620:CDS
TTCACGGCATATGGTGAAGG+TGG 0.632618 3_2:-66396455 None:intergenic
TTGTCCCTTCTCAGATACTG+TGG 0.633350 3_2:-66393883 None:intergenic
TCCATGCAACCTAAGTGACA+AGG 0.634773 3_2:+66396651 Msa0418620:CDS
GTTGATGAAAGAAGCAATGG+TGG 0.641485 3_2:+66394014 Msa0418620:CDS
CCGATCCTACATCTGTTGGA+GGG 0.641989 3_2:+66395454 Msa0418620:CDS
TAACGTCCAGGCATAGTTGG+GGG 0.648794 3_2:-66396866 None:intergenic
TTGTTCACGGCATATGGTGA+AGG 0.648890 3_2:-66396458 None:intergenic
TCTGCCACAGTATCTGAGAA+GGG 0.649421 3_2:+66393879 Msa0418620:CDS
GCAGTTTCTTCTTAAAACCG+GGG 0.649557 3_2:+66396567 Msa0418620:intron
TACGTTGATGAAAGAAGCAA+TGG 0.659207 3_2:+66394011 Msa0418620:CDS
CAGTATCTGAGAAGGGACAA+GGG 0.662707 3_2:+66393886 Msa0418620:CDS
TGGTTGGAATGATGATAATG+TGG 0.669541 3_2:+66393953 Msa0418620:CDS
CCATGCAACCTAAGTGACAA+GGG 0.676957 3_2:+66396652 Msa0418620:CDS
TGATGAGAAAGTGAATGAGA+AGG 0.685115 3_2:+66393779 Msa0418620:CDS
GAGCTGAACAGTATCCATTG+AGG 0.685815 3_2:+66394036 Msa0418620:CDS
AGGATGATGATTGGAAACAG+GGG 0.702661 3_2:-66393589 None:intergenic
AAACTCGGCTAGTATTGAGG+AGG 0.710931 3_2:+66396907 Msa0418620:CDS
TTGTCACTTAGGTTGCATGG+AGG 0.747188 3_2:-66396649 None:intergenic
CCATTCCAATCAGAACTTCG+GGG 0.758521 3_2:-66395627 None:intergenic
TGATTGGATTGAGAATGAGG+TGG 0.762353 3_2:+66393980 Msa0418620:CDS
TTTCTGGTAGAAGACCATGG+GGG 0.864818 3_2:-66395546 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTAAAACTAAATGA+AGG + chr3_2:66394358-66394377 Msa0418620:intron 10.0%
!! TTTATTTGAGGAAAAATAAA+AGG - chr3_2:66393416-66393435 None:intergenic 15.0%
!! ACTTAATATACATAAATGAA+TGG - chr3_2:66394255-66394274 None:intergenic 15.0%
!!! TGTACATTTTTTTATATCAT+TGG + chr3_2:66395696-66395715 Msa0418620:intron 15.0%
!!! ATTTTCTTGTTTATGTATTA+TGG + chr3_2:66397238-66397257 Msa0418620:three_prime_UTR 15.0%
!!! TTTTTCTGACATAATTTACT+CGG - chr3_2:66394863-66394882 None:intergenic 20.0%
!!! TTTGCTATATTGAAAAATGT+TGG + chr3_2:66394970-66394989 Msa0418620:intron 20.0%
!! GTTATAATCTAAATAATAGC+AGG - chr3_2:66395080-66395099 None:intergenic 20.0%
!!! AAACTTTTTTCTCTCTTTTT+AGG + chr3_2:66395905-66395924 Msa0418620:intron 20.0%
!!! CTTTTTTTTCCTTTCTTTTT+AGG + chr3_2:66395932-66395951 Msa0418620:intron 20.0%
!! AAATGCAAGTAATATACTTA+AGG + chr3_2:66396181-66396200 Msa0418620:intron 20.0%
!! TCATAAGAATAATTAACTGA+CGG - chr3_2:66396343-66396362 None:intergenic 20.0%
!! TTTAATATCTTGTGAAATTC+AGG + chr3_2:66396757-66396776 Msa0418620:intron 20.0%
!! TTAATATCTTGTGAAATTCA+GGG + chr3_2:66396758-66396777 Msa0418620:intron 20.0%
!! AAGATGAAAATCACAAAATA+TGG - chr3_2:66397029-66397048 None:intergenic 20.0%
!!! ATTACTTTATTTAACTTCAC+TGG + chr3_2:66397056-66397075 Msa0418620:three_prime_UTR 20.0%
! AATTAATTAATGCGATGATG+TGG - chr3_2:66393316-66393335 None:intergenic 25.0%
! TCAATCAAATTTCAACTACT+AGG + chr3_2:66393470-66393489 Msa0418620:five_prime_UTR 25.0%
! CAATCAAATTTCAACTACTA+GGG + chr3_2:66393471-66393490 Msa0418620:five_prime_UTR 25.0%
!! TGTTCTTTTTATCTTAAGAC+TGG + chr3_2:66394074-66394093 Msa0418620:CDS 25.0%
! TCTTATATGTTATAGCATAG+CGG + chr3_2:66394686-66394705 Msa0418620:intron 25.0%
! ATCAATTATGAATATGCTTC+TGG + chr3_2:66394906-66394925 Msa0418620:intron 25.0%
!!! TTTTTCAATATAGCAAAGCT+AGG - chr3_2:66394967-66394986 None:intergenic 25.0%
! GACATTGTATGATAGAAAAT+TGG - chr3_2:66395744-66395763 None:intergenic 25.0%
! GTATAGTTAATACTGAGTTA+TGG + chr3_2:66395821-66395840 Msa0418620:intron 25.0%
!!! TTGACTTTTAAGTAACTGAT+GGG - chr3_2:66395887-66395906 None:intergenic 25.0%
!!! TTTGACTTTTAAGTAACTGA+TGG - chr3_2:66395888-66395907 None:intergenic 25.0%
! AATAGAATGGATGTATATAC+TGG - chr3_2:66395973-66395992 None:intergenic 25.0%
! GTCAGTTAATTATTCTTATG+AGG + chr3_2:66396342-66396361 Msa0418620:intron 25.0%
!! GACCAATTTGTATTTTGTAT+AGG + chr3_2:66396400-66396419 Msa0418620:intron 25.0%
! TGCCTATACAAAATACAAAT+TGG - chr3_2:66396405-66396424 None:intergenic 25.0%
! ATCAGAGTAAAATAACTTAC+AGG - chr3_2:66396691-66396710 None:intergenic 25.0%
! AAATGTTAGATCAAAGAAAC+TGG - chr3_2:66396740-66396759 None:intergenic 25.0%
!! GATTGAAACATTTTCTATCA+AGG + chr3_2:66396975-66396994 Msa0418620:three_prime_UTR 25.0%
!! ATTTTCTATCAAGGATCTTA+TGG + chr3_2:66396984-66397003 Msa0418620:three_prime_UTR 25.0%
! TGAAAATCACAAAATATGGA+TGG - chr3_2:66397025-66397044 None:intergenic 25.0%
! ACTAAAGTTCAACATTTCAT+TGG - chr3_2:66397267-66397286 None:intergenic 25.0%
!! TTTTCCTAAAATCTCTTAAC+AGG - chr3_2:66397330-66397349 None:intergenic 25.0%
!!! AAGAGATTTTAGGAAAAATC+AGG + chr3_2:66397333-66397352 Msa0418620:three_prime_UTR 25.0%
TGTTACATCATTGTAGTAGT+TGG - chr3_2:66393356-66393375 None:intergenic 30.0%
TTGAAAGAGTGAGAGAAATA+AGG - chr3_2:66393447-66393466 None:intergenic 30.0%
!!! TAGGGTTTCTTTTTGAAATG+TGG + chr3_2:66393489-66393508 Msa0418620:five_prime_UTR 30.0%
!!! GTTTCTTTTTGAAATGTGGA+GGG + chr3_2:66393493-66393512 Msa0418620:five_prime_UTR 30.0%
TCAACAATCTCAATCACATT+TGG + chr3_2:66393539-66393558 Msa0418620:CDS 30.0%
AAAGGTTCAAACTTTGATGT+TGG + chr3_2:66393699-66393718 Msa0418620:CDS 30.0%
!! CATCAATTTGATGATGATGA+TGG + chr3_2:66393912-66393931 Msa0418620:CDS 30.0%
!! AATTTGATGATGATGATGGT+TGG + chr3_2:66393916-66393935 Msa0418620:CDS 30.0%
!! AAATGAAGGTTTTTAGAGAG+AGG + chr3_2:66394372-66394391 Msa0418620:intron 30.0%
!! AATGAAGGTTTTTAGAGAGA+GGG + chr3_2:66394373-66394392 Msa0418620:intron 30.0%
! TTTTATGAATGCCTTGACTA+TGG + chr3_2:66394502-66394521 Msa0418620:intron 30.0%
TGTTGTCAAATAGACTATAG+CGG + chr3_2:66394756-66394775 Msa0418620:intron 30.0%
!! TGAATATGCTTCTGGAATAA+TGG + chr3_2:66394914-66394933 Msa0418620:intron 30.0%
!! GAATATGCTTCTGGAATAAT+GGG + chr3_2:66394915-66394934 Msa0418620:intron 30.0%
TACTGTCATGTCATAACATT+AGG - chr3_2:66395119-66395138 None:intergenic 30.0%
TGACAGTATTATTCAAGATC+TGG + chr3_2:66395131-66395150 Msa0418620:intron 30.0%
GACAGTATTATTCAAGATCT+GGG + chr3_2:66395132-66395151 Msa0418620:intron 30.0%
ACAGTATTATTCAAGATCTG+GGG + chr3_2:66395133-66395152 Msa0418620:intron 30.0%
AAAGCTTATACCAAACGAAT+AGG - chr3_2:66395248-66395267 None:intergenic 30.0%
! AGCAGTTTCATTGAATTTTC+TGG - chr3_2:66395565-66395584 None:intergenic 30.0%
GAAATTATGATTGGCACAAA+AGG - chr3_2:66395588-66395607 None:intergenic 30.0%
ATTATTGACAACTGTGGATT+AGG - chr3_2:66395781-66395800 None:intergenic 30.0%
!! TGACTTTTAAGTAACTGATG+GGG - chr3_2:66395886-66395905 None:intergenic 30.0%
AAAAGAGAGCCTAAAAAGAA+AGG - chr3_2:66395944-66395963 None:intergenic 30.0%
! GTACTTAATCTGAAATGATG+TGG - chr3_2:66396002-66396021 None:intergenic 30.0%
CATTTCAGATTAAGTACCTT+TGG + chr3_2:66396005-66396024 Msa0418620:intron 30.0%
! ATTTGTTAGTAATTGCCCTT+AGG + chr3_2:66396064-66396083 Msa0418620:intron 30.0%
TTTGTTAGTAATTGCCCTTA+GGG + chr3_2:66396065-66396084 Msa0418620:intron 30.0%
CAAAACAACGAATAATAGAG+AGG - chr3_2:66396282-66396301 None:intergenic 30.0%
AGAATAATTAACTGACGGAA+AGG - chr3_2:66396338-66396357 None:intergenic 30.0%
GTTAATTATTCTTATGAGGC+AGG + chr3_2:66396346-66396365 Msa0418620:intron 30.0%
ATACAAATTGGTCAAATTGC+TGG - chr3_2:66396393-66396412 None:intergenic 30.0%
TTTAAGAAGAAACTGCATTC+AGG - chr3_2:66396563-66396582 None:intergenic 30.0%
ATGCAGTTTCTTCTTAAAAC+CGG + chr3_2:66396565-66396584 Msa0418620:intron 30.0%
TGGATGATGAAATTTGCAAT+GGG - chr3_2:66396608-66396627 None:intergenic 30.0%
TTGGATGATGAAATTTGCAA+TGG - chr3_2:66396609-66396628 None:intergenic 30.0%
AATTTCATCATCCAAAGAAC+CGG + chr3_2:66396614-66396633 Msa0418620:CDS 30.0%
! AATTTTGTAATCCGGTTCTT+TGG - chr3_2:66396628-66396647 None:intergenic 30.0%
! ATGGAGGTAATTTTGTAATC+CGG - chr3_2:66396636-66396655 None:intergenic 30.0%
AAATAACTTACAGGTCTCAA+AGG - chr3_2:66396682-66396701 None:intergenic 30.0%
CAAATTTGCAAATTCCGTAT+CGG - chr3_2:66396808-66396827 None:intergenic 30.0%
!! GCAACAATTTTATAGCTTTG+AGG + chr3_2:66396953-66396972 Msa0418620:exon 30.0%
ATATATAGCTATTCCGCAAA+AGG - chr3_2:66397103-66397122 None:intergenic 30.0%
!! TATCTCTCTTGGATTAGTAT+TGG + chr3_2:66397175-66397194 Msa0418620:three_prime_UTR 30.0%
ATTGGATTATATAGTTGTGC+TGG + chr3_2:66397193-66397212 Msa0418620:three_prime_UTR 30.0%
CAAAAGAACTGCTCAATTAA+TGG + chr3_2:66397292-66397311 Msa0418620:three_prime_UTR 30.0%
CATCATTGTAGTAGTTGGTT+TGG - chr3_2:66393351-66393370 None:intergenic 35.0%
!!! AAGGTTGTGGGTTTTATTTG+AGG - chr3_2:66393428-66393447 None:intergenic 35.0%
AGTGAGAGAAATAAGGTTGT+GGG - chr3_2:66393440-66393459 None:intergenic 35.0%
!!! GGTTTCTTTTTGAAATGTGG+AGG + chr3_2:66393492-66393511 Msa0418620:five_prime_UTR 35.0%
TGTGATTGAGATTGTTGAGA+CGG - chr3_2:66393537-66393556 None:intergenic 35.0%
GTCAATTGATTGAGATCTGA+GGG - chr3_2:66393618-66393637 None:intergenic 35.0%
!! TGCTGTTCTAGAATCTGATA+AGG + chr3_2:66393731-66393750 Msa0418620:CDS 35.0%
!! GCTGTTCTAGAATCTGATAA+GGG + chr3_2:66393732-66393751 Msa0418620:CDS 35.0%
TCTCATCATCATCATCATCA+TGG - chr3_2:66393767-66393786 None:intergenic 35.0%
TGATGAGAAAGTGAATGAGA+AGG + chr3_2:66393779-66393798 Msa0418620:CDS 35.0%
! GATGATGATGATGATGAAGT+TGG + chr3_2:66393810-66393829 Msa0418620:CDS 35.0%
! GTTGGTGGAATTGATGATAA+AGG + chr3_2:66393828-66393847 Msa0418620:CDS 35.0%
! TGGTTGGAATGATGATAATG+TGG + chr3_2:66393953-66393972 Msa0418620:CDS 35.0%
! ATGATAATGTGGTGAGTGAT+TGG + chr3_2:66393964-66393983 Msa0418620:CDS 35.0%
! TACGTTGATGAAAGAAGCAA+TGG + chr3_2:66394011-66394030 Msa0418620:CDS 35.0%
AAGACTGGAACTTGCAAATT+TGG + chr3_2:66394089-66394108 Msa0418620:CDS 35.0%
GAACATAAGAAAGTGATACC+TGG - chr3_2:66394154-66394173 None:intergenic 35.0%
! AGTAAGAGTGTACTAGAAAG+AGG - chr3_2:66394176-66394195 None:intergenic 35.0%
AAAATACCTTGCATTCTGTC+TGG - chr3_2:66394433-66394452 None:intergenic 35.0%
GATTGTGTAAGGTTAACTCT+AGG + chr3_2:66394591-66394610 Msa0418620:intron 35.0%
TGCTCAGTATTGTCAAATAG+CGG + chr3_2:66394652-66394671 Msa0418620:intron 35.0%
TATTGTCAAATAGCGGCTAT+AGG + chr3_2:66394659-66394678 Msa0418620:intron 35.0%
ATTGTCAAATAGCGGCTATA+GGG + chr3_2:66394660-66394679 Msa0418620:intron 35.0%
TTGTCAATCACGGAAAATAG+TGG - chr3_2:66394818-66394837 None:intergenic 35.0%
ATAGGTAGTGTTGTCAATCA+CGG - chr3_2:66394828-66394847 None:intergenic 35.0%
ACAAGTTTAAGAAATGGCTC+AGG - chr3_2:66395057-66395076 None:intergenic 35.0%
AGCAGGACAAGTTTAAGAAA+TGG - chr3_2:66395063-66395082 None:intergenic 35.0%
CAGTATTATTCAAGATCTGG+GGG + chr3_2:66395134-66395153 Msa0418620:intron 35.0%
TGTAAATTTGATCACACCAG+AGG + chr3_2:66395176-66395195 Msa0418620:CDS 35.0%
!!! GTTTTAGAGCTTAACTTCCT+TGG + chr3_2:66395218-66395237 Msa0418620:CDS 35.0%
CTTATACCAAACGAATAGGT+AGG - chr3_2:66395244-66395263 None:intergenic 35.0%
ACAACACGGCTAAAATTTCA+GGG - chr3_2:66395349-66395368 None:intergenic 35.0%
AACAACACGGCTAAAATTTC+AGG - chr3_2:66395350-66395369 None:intergenic 35.0%
CCCTATCATGAAAAACAACA+CGG - chr3_2:66395363-66395382 None:intergenic 35.0%
!!! CCGTGTTGTTTTTCATGATA+GGG + chr3_2:66395360-66395379 Msa0418620:intron 35.0%
!!! TGTTGTTTTTCATGATAGGG+TGG + chr3_2:66395363-66395382 Msa0418620:intron 35.0%
!!! GTTGTTTTTCATGATAGGGT+GGG + chr3_2:66395364-66395383 Msa0418620:intron 35.0%
!! ATTTTCTGGTAGAAGACCAT+GGG - chr3_2:66395551-66395570 None:intergenic 35.0%
!! AATTTTCTGGTAGAAGACCA+TGG - chr3_2:66395552-66395571 None:intergenic 35.0%
ATCCATTCCAATCAGAACTT+CGG - chr3_2:66395632-66395651 None:intergenic 35.0%
TTCTGATTGGAATGGATATC+AGG + chr3_2:66395635-66395654 Msa0418620:CDS 35.0%
ATGATAGAAAATTGGCAGAG+TGG - chr3_2:66395736-66395755 None:intergenic 35.0%
TACAATGTCAATGTTTCCTG+TGG + chr3_2:66395755-66395774 Msa0418620:intron 35.0%
!! TCTTTTTAGGCTCTCTTTTG+TGG + chr3_2:66395945-66395964 Msa0418620:intron 35.0%
TTACACGTCAAACTATCACT+TGG - chr3_2:66396223-66396242 None:intergenic 35.0%
! AACGAATAATAGAGAGGTGT+AGG - chr3_2:66396276-66396295 None:intergenic 35.0%
AAATTGCTGGAAAAATGGCA+AGG - chr3_2:66396380-66396399 None:intergenic 35.0%
TGGTCAAATTGCTGGAAAAA+TGG - chr3_2:66396385-66396404 None:intergenic 35.0%
!! CACCTTTCTATTTTTCTGAG+AGG + chr3_2:66396423-66396442 Msa0418620:CDS 35.0%
CTCCTCTCAGAAAAATAGAA+AGG - chr3_2:66396428-66396447 None:intergenic 35.0%
TGCAGTTTCTTCTTAAAACC+GGG + chr3_2:66396566-66396585 Msa0418620:intron 35.0%
GGATTTAAATTTGCAATCCC+CGG - chr3_2:66396587-66396606 None:intergenic 35.0%
AACTGGTGACATGTACATTA+GGG - chr3_2:66396723-66396742 None:intergenic 35.0%
AAACTGGTGACATGTACATT+AGG - chr3_2:66396724-66396743 None:intergenic 35.0%
CGATACGGAATTTGCAAATT+TGG + chr3_2:66396806-66396825 Msa0418620:CDS 35.0%
! AGCTGCTGTAGATTATCTTT+TGG + chr3_2:66397141-66397160 Msa0418620:three_prime_UTR 35.0%
!! TTCCAGTTTGTTATCTCTCT+TGG + chr3_2:66397164-66397183 Msa0418620:three_prime_UTR 35.0%
ATCCAAGAGAGATAACAAAC+TGG - chr3_2:66397169-66397188 None:intergenic 35.0%
! GTAGCCTGTTAAGAGATTTT+AGG + chr3_2:66397323-66397342 Msa0418620:three_prime_UTR 35.0%
GAGTGAGAGAAATAAGGTTG+TGG - chr3_2:66393441-66393460 None:intergenic 40.0%
AGGATGATGATTGGAAACAG+GGG - chr3_2:66393592-66393611 None:intergenic 40.0%
CAGGATGATGATTGGAAACA+GGG - chr3_2:66393593-66393612 None:intergenic 40.0%
TCAGGATGATGATTGGAAAC+AGG - chr3_2:66393594-66393613 None:intergenic 40.0%
GGTCAATTGATTGAGATCTG+AGG - chr3_2:66393619-66393638 None:intergenic 40.0%
CTGAAGCTCATCATCAAGTT+GGG - chr3_2:66393640-66393659 None:intergenic 40.0%
! TCTGAAGCTCATCATCAAGT+TGG - chr3_2:66393641-66393660 None:intergenic 40.0%
TGATGAGCTTCAGAACAAGT+TGG + chr3_2:66393647-66393666 Msa0418620:CDS 40.0%
! CAAGTTGGATTTGAAAGCTG+AGG + chr3_2:66393662-66393681 Msa0418620:CDS 40.0%
TTGGATTTGAAAGCTGAGGA+TGG + chr3_2:66393666-66393685 Msa0418620:CDS 40.0%
GAGGATGGAATTGAGGAAAA+AGG + chr3_2:66393681-66393700 Msa0418620:CDS 40.0%
! GATGATGATGATGAAGTTGG+TGG + chr3_2:66393813-66393832 Msa0418620:CDS 40.0%
!! GATGATGATGATGGTTGGAA+TGG + chr3_2:66393921-66393940 Msa0418620:CDS 40.0%
GGTTGGAATGGTGATTATGA+TGG + chr3_2:66393933-66393952 Msa0418620:CDS 40.0%
GGAATGGTGATTATGATGGT+TGG + chr3_2:66393937-66393956 Msa0418620:CDS 40.0%
GAGTGATTGGATTGAGAATG+AGG + chr3_2:66393977-66393996 Msa0418620:CDS 40.0%
TGATTGGATTGAGAATGAGG+TGG + chr3_2:66393980-66393999 Msa0418620:CDS 40.0%
! GTTGATGAAAGAAGCAATGG+TGG + chr3_2:66394014-66394033 Msa0418620:CDS 40.0%
AAAGAACAGTCTTCAGCTTC+AGG - chr3_2:66394062-66394081 None:intergenic 40.0%
GCAAGTTTAATCACCCTGTT+TGG + chr3_2:66394120-66394139 Msa0418620:CDS 40.0%
!! AAGGTTTTTAGAGAGAGGGA+AGG + chr3_2:66394377-66394396 Msa0418620:intron 40.0%
GGAAGGAGAAAGAGATGAAT+TGG + chr3_2:66394394-66394413 Msa0418620:CDS 40.0%
AGGAGAAAGAGATGAATTGG+AGG + chr3_2:66394397-66394416 Msa0418620:CDS 40.0%
TTTCCATGGGAGATTGTGTA+AGG + chr3_2:66394580-66394599 Msa0418620:intron 40.0%
TAACCTTACACAATCTCCCA+TGG - chr3_2:66394586-66394605 None:intergenic 40.0%
TGTGTAAGGTTAACTCTAGG+AGG + chr3_2:66394594-66394613 Msa0418620:intron 40.0%
TTGTCAAATAGCGGCTATAG+GGG + chr3_2:66394661-66394680 Msa0418620:intron 40.0%
AAACTTTCGTTGCTGTATCC+TGG + chr3_2:66394941-66394960 Msa0418620:intron 40.0%
ATCTGCTGAAAACTTTCCTC+TGG - chr3_2:66395195-66395214 None:intergenic 40.0%
!! TCAGCATAGCTTGCTAAGTA+AGG - chr3_2:66395274-66395293 None:intergenic 40.0%
! CAGCTATCTTTTTCTGCTGT+CGG + chr3_2:66395315-66395334 Msa0418620:intron 40.0%
!!! GCCGTGTTGTTTTTCATGAT+AGG + chr3_2:66395359-66395378 Msa0418620:intron 40.0%
TGCTCCAAACTTACAAGAAC+CGG - chr3_2:66395415-66395434 None:intergenic 40.0%
TATGACTCCACTTCAGGATA+TGG + chr3_2:66395477-66395496 Msa0418620:CDS 40.0%
TCCACTTCAGGATATGGTAA+TGG + chr3_2:66395483-66395502 Msa0418620:CDS 40.0%
TCCATTACCATATCCTGAAG+TGG - chr3_2:66395487-66395506 None:intergenic 40.0%
!! TTTTCTGGTAGAAGACCATG+GGG - chr3_2:66395550-66395569 None:intergenic 40.0%
GGAGTCGGTGAAATTATGAT+TGG - chr3_2:66395597-66395616 None:intergenic 40.0%
!! ATCATAATTTCACCGACTCC+AGG + chr3_2:66395597-66395616 Msa0418620:CDS 40.0%
!! TCATAATTTCACCGACTCCA+GGG + chr3_2:66395598-66395617 Msa0418620:CDS 40.0%
TCCATTCCAATCAGAACTTC+GGG - chr3_2:66395631-66395650 None:intergenic 40.0%
CTGAGCATTATTGACAACTG+TGG - chr3_2:66395787-66395806 None:intergenic 40.0%
GAGTTATGGCATGATCTGTA+AGG + chr3_2:66395835-66395854 Msa0418620:intron 40.0%
GATGTGGTTGTGCAATAGAA+TGG - chr3_2:66395986-66396005 None:intergenic 40.0%
GTGGTGAAGGAAACAACAAT+TGG + chr3_2:66396090-66396109 Msa0418620:intron 40.0%
TGTTGCATGCCATTCTTATG+AGG + chr3_2:66396300-66396319 Msa0418620:intron 40.0%
TTCCATAGCTGGATTGTTCA+CGG - chr3_2:66396474-66396493 None:intergenic 40.0%
TAAGCATTCGTTTCCATAGC+TGG - chr3_2:66396485-66396504 None:intergenic 40.0%
CAACTGGTGTATGCTTATGA+CGG - chr3_2:66396514-66396533 None:intergenic 40.0%
! CTTTCTGGAAACTCTTCAAC+TGG - chr3_2:66396530-66396549 None:intergenic 40.0%
GCAGTTTCTTCTTAAAACCG+GGG + chr3_2:66396567-66396586 Msa0418620:intron 40.0%
TGTAATGAGTGCACACATTC+TGG - chr3_2:66396784-66396803 None:intergenic 40.0%
TGCACTCATTACAACCGATA+CGG + chr3_2:66396791-66396810 Msa0418620:CDS 40.0%
ACAATCCTCTCACACAAACT+CGG + chr3_2:66396892-66396911 Msa0418620:CDS 40.0%
AAGATAATCTACAGCAGCTG+AGG - chr3_2:66397140-66397159 None:intergenic 40.0%
! GATGATGTGGATTGTTGCGA+TGG - chr3_2:66393303-66393322 None:intergenic 45.0%
GATTGTTGAGACGGTTCCAT+TGG - chr3_2:66393528-66393547 None:intergenic 45.0%
TGAGGGTTCAGGATGATGAT+TGG - chr3_2:66393601-66393620 None:intergenic 45.0%
TGATTGAGATCTGAGGGTTC+AGG - chr3_2:66393612-66393631 None:intergenic 45.0%
GAAAGCTGAGGATGGAATTG+AGG + chr3_2:66393674-66393693 Msa0418620:CDS 45.0%
ATCTGCCACAGTATCTGAGA+AGG + chr3_2:66393878-66393897 Msa0418620:CDS 45.0%
TCTGCCACAGTATCTGAGAA+GGG + chr3_2:66393879-66393898 Msa0418620:CDS 45.0%
TTGTCCCTTCTCAGATACTG+TGG - chr3_2:66393886-66393905 None:intergenic 45.0%
ACAGTATCTGAGAAGGGACA+AGG + chr3_2:66393885-66393904 Msa0418620:CDS 45.0%
CAGTATCTGAGAAGGGACAA+GGG + chr3_2:66393886-66393905 Msa0418620:CDS 45.0%
ATTGAGAATGAGGTGGTGAG+TGG + chr3_2:66393987-66394006 Msa0418620:CDS 45.0%
GAGCTGAACAGTATCCATTG+AGG + chr3_2:66394036-66394055 Msa0418620:CDS 45.0%
CCTGGTTTCTTCTCCAAACA+GGG - chr3_2:66394136-66394155 None:intergenic 45.0%
ACCTGGTTTCTTCTCCAAAC+AGG - chr3_2:66394137-66394156 None:intergenic 45.0%
ATCAAGCCAGACAGAATGCA+AGG + chr3_2:66394424-66394443 Msa0418620:CDS 45.0%
TCTCCCATGGAAAATCCCAT+GGG - chr3_2:66394573-66394592 None:intergenic 45.0%
ATCTCCCATGGAAAATCCCA+TGG - chr3_2:66394574-66394593 None:intergenic 45.0%
TGTCAAATAGCGGCTATAGG+GGG + chr3_2:66394662-66394681 Msa0418620:intron 45.0%
CAATATAGCAAAGCTAGGCC+AGG - chr3_2:66394962-66394981 None:intergenic 45.0%
AGATCTGGGGGTTGTAAGTT+TGG + chr3_2:66395146-66395165 Msa0418620:CDS 45.0%
TGGGGGTTGTAAGTTTGGAA+AGG + chr3_2:66395151-66395170 Msa0418620:CDS 45.0%
AACCGGTGCGCATGTAATAA+GGG - chr3_2:66395398-66395417 None:intergenic 45.0%
TCATACCCTCCAACAGATGT+AGG - chr3_2:66395462-66395481 None:intergenic 45.0%
! TTTCTGGTAGAAGACCATGG+GGG - chr3_2:66395549-66395568 None:intergenic 45.0%
!! CATAATTTCACCGACTCCAG+GGG + chr3_2:66395599-66395618 Msa0418620:CDS 45.0%
CCATTCCAATCAGAACTTCG+GGG - chr3_2:66395630-66395649 None:intergenic 45.0%
ACTTCTGAGCATGCATCCAA+AGG - chr3_2:66396024-66396043 None:intergenic 45.0%
AGTAATTGCCCTTAGGGTAG+TGG + chr3_2:66396071-66396090 Msa0418620:intron 45.0%
TTCCTTCACCACTACCCTAA+GGG - chr3_2:66396082-66396101 None:intergenic 45.0%
TTTCCTTCACCACTACCCTA+AGG - chr3_2:66396083-66396102 None:intergenic 45.0%
TAACTGACGGAAAGGAAGAG+AGG - chr3_2:66396330-66396349 None:intergenic 45.0%
GGAAAAATGGCAAGGAAGAG+AGG - chr3_2:66396372-66396391 None:intergenic 45.0%
TTGTTCACGGCATATGGTGA+AGG - chr3_2:66396461-66396480 None:intergenic 45.0%
GAAGAGTTTCCAGAAAGACC+TGG + chr3_2:66396533-66396552 Msa0418620:intron 45.0%
! AAACTGCATTCAGGTTCACC+AGG - chr3_2:66396554-66396573 None:intergenic 45.0%
! TTGTCACTTAGGTTGCATGG+AGG - chr3_2:66396652-66396671 None:intergenic 45.0%
TCCATGCAACCTAAGTGACA+AGG + chr3_2:66396651-66396670 Msa0418620:CDS 45.0%
CCATGCAACCTAAGTGACAA+GGG + chr3_2:66396652-66396671 Msa0418620:CDS 45.0%
ATAACGTCCAGGCATAGTTG+GGG - chr3_2:66396870-66396889 None:intergenic 45.0%
GATAACGTCCAGGCATAGTT+GGG - chr3_2:66396871-66396890 None:intergenic 45.0%
! TGATAACGTCCAGGCATAGT+TGG - chr3_2:66396872-66396891 None:intergenic 45.0%
!! GAGGATTGTTGATAACGTCC+AGG - chr3_2:66396881-66396900 None:intergenic 45.0%
CACAAACTCGGCTAGTATTG+AGG + chr3_2:66396904-66396923 Msa0418620:CDS 45.0%
! AAACTCGGCTAGTATTGAGG+AGG + chr3_2:66396907-66396926 Msa0418620:CDS 45.0%
! TTCACTGGTTATGCCTGATG+TGG + chr3_2:66397071-66397090 Msa0418620:three_prime_UTR 45.0%
!!! TATTATTATTATTATTTTTG+TGG + chr3_2:66394205-66394224 Msa0418620:intron 5.0%
ATTGTTGCGATGGCATGGCA+GGG - chr3_2:66393293-66393312 None:intergenic 50.0%
! TGTGGATTGTTGCGATGGCA+TGG - chr3_2:66393298-66393317 None:intergenic 50.0%
TGGAGGGATTCCATCACCAA+TGG + chr3_2:66393509-66393528 Msa0418620:exon 50.0%
TGAGACGGTTCCATTGGTGA+TGG - chr3_2:66393522-66393541 None:intergenic 50.0%
TCTTCAGCTTCAGGCCTCAA+TGG - chr3_2:66394053-66394072 None:intergenic 50.0%
CCCTGTTTGGAGAAGAAACC+AGG + chr3_2:66394133-66394152 Msa0418620:CDS 50.0%
AATGCAAATTCCCCTGCCCA+TGG + chr3_2:66394554-66394573 Msa0418620:intron 50.0%
ATGCAAATTCCCCTGCCCAT+GGG + chr3_2:66394555-66394574 Msa0418620:intron 50.0%
ATGGAAAATCCCATGGGCAG+GGG - chr3_2:66394567-66394586 None:intergenic 50.0%
CATGGAAAATCCCATGGGCA+GGG - chr3_2:66394568-66394587 None:intergenic 50.0%
! CTGCCCATGGGATTTTCCAT+GGG + chr3_2:66394567-66394586 Msa0418620:intron 50.0%
ACTCGGTCGAACTCAAGCAT+AGG - chr3_2:66394846-66394865 None:intergenic 50.0%
CCAAACGAATAGGTAGGCCA+AGG - chr3_2:66395238-66395257 None:intergenic 50.0%
CCTTGGCCTACCTATTCGTT+TGG + chr3_2:66395235-66395254 Msa0418620:CDS 50.0%
CACGGCTAAAATTTCAGGGC+AGG - chr3_2:66395345-66395364 None:intergenic 50.0%
TGCCCTTATTACATGCGCAC+CGG + chr3_2:66395393-66395412 Msa0418620:CDS 50.0%
GAACCGGTGCGCATGTAATA+AGG - chr3_2:66395399-66395418 None:intergenic 50.0%
!! CGCACCGGTTCTTGTAAGTT+TGG + chr3_2:66395408-66395427 Msa0418620:CDS 50.0%
CATCCCGATCCTACATCTGT+TGG + chr3_2:66395450-66395469 Msa0418620:CDS 50.0%
CCTCCAACAGATGTAGGATC+GGG - chr3_2:66395456-66395475 None:intergenic 50.0%
CCCTCCAACAGATGTAGGAT+CGG - chr3_2:66395457-66395476 None:intergenic 50.0%
CCGATCCTACATCTGTTGGA+GGG + chr3_2:66395454-66395473 Msa0418620:CDS 50.0%
! CTTCTCCCCGAAGTTCTGAT+TGG + chr3_2:66395622-66395641 Msa0418620:CDS 50.0%
! CCCCGAAGTTCTGATTGGAA+TGG + chr3_2:66395627-66395646 Msa0418620:CDS 50.0%
!! ACAACTGTGGATTAGGCCAC+AGG - chr3_2:66395774-66395793 None:intergenic 50.0%
GCATGCCATTCTTATGAGGC+AGG + chr3_2:66396304-66396323 Msa0418620:intron 50.0%
AGAGGCCTGCCTCATAAGAA+TGG - chr3_2:66396312-66396331 None:intergenic 50.0%
TTCACGGCATATGGTGAAGG+TGG - chr3_2:66396458-66396477 None:intergenic 50.0%
GCTGGATTGTTCACGGCATA+TGG - chr3_2:66396467-66396486 None:intergenic 50.0%
TGCCGTGAACAATCCAGCTA+TGG + chr3_2:66396469-66396488 Msa0418620:intron 50.0%
TCAGGTTCACCAGGTCTTTC+TGG - chr3_2:66396545-66396564 None:intergenic 50.0%
! CCCTTGTCACTTAGGTTGCA+TGG - chr3_2:66396655-66396674 None:intergenic 50.0%
! AAGGCAGACCCTTGTCACTT+AGG - chr3_2:66396663-66396682 None:intergenic 50.0%
GGGTGGTCATACTTACAAGC+TGG - chr3_2:66396833-66396852 None:intergenic 50.0%
TAACGTCCAGGCATAGTTGG+GGG - chr3_2:66396869-66396888 None:intergenic 50.0%
ACTAGCCGAGTTTGTGTGAG+AGG - chr3_2:66396900-66396919 None:intergenic 50.0%
! AGTATTGAGGAGGCTGGAAG+TGG + chr3_2:66396917-66396936 Msa0418620:CDS 50.0%
CAAAAGGCTTGTGCCACATC+AGG - chr3_2:66397087-66397106 None:intergenic 50.0%
! GATGTGGCACAAGCCTTTTG+CGG + chr3_2:66397087-66397106 Msa0418620:three_prime_UTR 50.0%
GATTGTTGCGATGGCATGGC+AGG - chr3_2:66393294-66393313 None:intergenic 55.0%
CGACGCACAAGCCATAGTCA+AGG - chr3_2:66394516-66394535 None:intergenic 55.0%
CCATGGAAAATCCCATGGGC+AGG - chr3_2:66394569-66394588 None:intergenic 55.0%
! CCTGCCCATGGGATTTTCCA+TGG + chr3_2:66394566-66394585 Msa0418620:intron 55.0%
CCCGATCCTACATCTGTTGG+AGG + chr3_2:66395453-66395472 Msa0418620:CDS 55.0%
! GGAGGGTATGACTCCACTTC+AGG + chr3_2:66395471-66395490 Msa0418620:CDS 55.0%
! TGCCCTTAGGGTAGTGGTGA+AGG + chr3_2:66396077-66396096 Msa0418620:intron 55.0%
TTGGGGGCGGTAGGTTTATC+GGG - chr3_2:66396853-66396872 None:intergenic 55.0%
GTTGGGGGCGGTAGGTTTAT+CGG - chr3_2:66396854-66396873 None:intergenic 55.0%
! TCGGCTAGTATTGAGGAGGC+TGG + chr3_2:66396911-66396930 Msa0418620:CDS 55.0%
ATTGAGGAGGCTGGAAGTGG+AGG + chr3_2:66396920-66396939 Msa0418620:CDS 55.0%
CACAATCGTCCACACCCCCA+TGG + chr3_2:66395532-66395551 Msa0418620:CDS 60.0%
GGTAGAAGACCATGGGGGTG+TGG - chr3_2:66395544-66395563 None:intergenic 60.0%
GAACTTCGGGGAGAAGCCCC+TGG - chr3_2:66395618-66395637 None:intergenic 65.0%
GGGGCGGTAGGTTTATCGGG+TGG - chr3_2:66396850-66396869 None:intergenic 65.0%
CAGGCATAGTTGGGGGCGGT+AGG - chr3_2:66396862-66396881 None:intergenic 65.0%
CTACCGCCCCCAACTATGCC+TGG + chr3_2:66396860-66396879 Msa0418620:CDS 65.0%
CGTCCAGGCATAGTTGGGGG+CGG - chr3_2:66396866-66396885 None:intergenic 65.0%
CGGGGAGAAGCCCCTGGAGT+CGG - chr3_2:66395612-66395631 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 66393251 66397400 66393251 ID=Msa0418620;Name=Msa0418620
chr3_2 mRNA 66393251 66397400 66393251 ID=Msa0418620-mRNA-1;Parent=Msa0418620;Name=Msa0418620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=277|0.83|0.71|1|1|1|7|433|482
chr3_2 exon 66393251 66394154 66393251 ID=Msa0418620-mRNA-1:exon:15176;Parent=Msa0418620-mRNA-1
chr3_2 exon 66394380 66394445 66394380 ID=Msa0418620-mRNA-1:exon:15177;Parent=Msa0418620-mRNA-1
chr3_2 exon 66395137 66395256 66395137 ID=Msa0418620-mRNA-1:exon:15178;Parent=Msa0418620-mRNA-1
chr3_2 exon 66395381 66395656 66395381 ID=Msa0418620-mRNA-1:exon:15179;Parent=Msa0418620-mRNA-1
chr3_2 exon 66396422 66396472 66396422 ID=Msa0418620-mRNA-1:exon:15180;Parent=Msa0418620-mRNA-1
chr3_2 exon 66396571 66396690 66396571 ID=Msa0418620-mRNA-1:exon:15181;Parent=Msa0418620-mRNA-1
chr3_2 exon 66396779 66397400 66396779 ID=Msa0418620-mRNA-1:exon:15182;Parent=Msa0418620-mRNA-1
chr3_2 five_prime_UTR 66393251 66393527 66393251 ID=Msa0418620-mRNA-1:five_prime_utr;Parent=Msa0418620-mRNA-1
chr3_2 CDS 66393528 66394154 66393528 ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2 CDS 66394380 66394445 66394380 ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2 CDS 66395137 66395256 66395137 ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2 CDS 66395381 66395656 66395381 ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2 CDS 66396422 66396472 66396422 ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2 CDS 66396571 66396690 66396571 ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2 CDS 66396779 66396967 66396779 ID=Msa0418620-mRNA-1:cds;Parent=Msa0418620-mRNA-1
chr3_2 three_prime_UTR 66396968 66397400 66396968 ID=Msa0418620-mRNA-1:three_prime_utr;Parent=Msa0418620-mRNA-1
Gene Sequence

>Msa0418620

ATGGAACCGTCTCAACAATCTCAATCACATTTGGCTTCTTCTCATCATGTTCAACATATTTCCCCTGTTTCCAATCATCATCCTGAACCCTCAGATCTCAATCAATTGACCCAACTTGATGATGAGCTTCAGAACAAGTTGGATTTGAAAGCTGAGGATGGAATTGAGGAAAAAGGTTCAAACTTTGATGTTGGTCATGAAGCTGCTGTTCTAGAATCTGATAAGGGACAAGAGTGCCATGATGATGATGATGATGAGAAAGTGAATGAGAAGGTGAGTACTGATGATGATGATGATGAAGTTGGTGGAATTGATGATAAAGGTTCAAACTTTGAAGTTGATGATGAAAAATCTGCCACAGTATCTGAGAAGGGACAAGGGTTTCATCAATTTGATGATGATGATGGTTGGAATGGTGATTATGATGGTTGGAATGATGATAATGTGGTGAGTGATTGGATTGAGAATGAGGTGGTGAGTGGATACGTTGATGAAAGAAGCAATGGTGGAGCTGAACAGTATCCATTGAGGCCTGAAGCTGAAGACTGTTCTTTTTATCTTAAGACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTTGGAGAAGAAACCAGGTTTTTAGAGAGAGGGAAGGAGAAAGAGATGAATTGGAGGAAAGATCAAGCCAGACAGAATGCAAGTATTATTCAAGATCTGGGGGTTGTAAGTTTGGAAAGGATTGTAAATTTGATCACACCAGAGGAAAGTTTTCAGCAGATCAAGTTTTAGAGCTTAACTTCCTTGGCCTACCTATTCGTTTGGGTGGGAAAGAATGCCCTTATTACATGCGCACCGGTTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACATCTGTTGGAGGGTATGACTCCACTTCAGGATATGGTAATGGAAGTTCTATTTCATTGCAAGACGTGTCACAATCGTCCACACCCCCATGGTCTTCTACCAGAAAATTCAATGAAACTGCTCCTTTTGTGCCAATCATAATTTCACCGACTCCAGGGGCTTCTCCCCGAAGTTCTGATTGGAATGGATATCAGGCACCTTTCTATTTTTCTGAGAGGAGTATGCATCCACCTTCACCATATGCCTTTCTTCTTAAAACCGGGGATTGCAAATTTAAATCCCATTGCAAATTTCATCATCCAAAGAACCGGATTACAAAATTACCTCCATGCAACCTAAGTGACAAGGGTCTGCCTTTGAGACCTGGCCAGAATGTGTGCACTCATTACAACCGATACGGAATTTGCAAATTTGGACCAGCTTGTAAGTATGACCACCCGATAAACCTACCGCCCCCAACTATGCCTGGACGTTATCAACAATCCTCTCACACAAACTCGGCTAGTATTGAGGAGGCTGGAAGTGGAGGAGCTAGTGATGCAACAATTTTATAG
Protein sequence

>Msa0418620

MEPSQQSQSHLASSHHVQHISPVSNHHPEPSDLNQLTQLDDELQNKLDLKAEDGIEEKGSNFDVGHEAAVLESDKGQECHDDDDDEKVNEKVSTDDDDDEVGGIDDKGSNFEVDDEKSATVSEKGQGFHQFDDDDGWNGDYDGWNDDNVVSDWIENEVVSGYVDERSNGGAEQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPVWRRNQVFREREGERDELEERSSQTECKYYSRSGGCKFGKDCKFDHTRGKFSADQVLELNFLGLPIRLGGKECPYYMRTGSCKFGANCKFNHPDPTSVGGYDSTSGYGNGSSISLQDVSQSSTPPWSSTRKFNETAPFVPIIISPTPGASPRSSDWNGYQAPFYFSERSMHPPSPYAFLLKTGDCKFKSHCKFHHPKNRITKLPPCNLSDKGLPLRPGQNVCTHYNRYGICKFGPACKYDHPINLPPPTMPGRYQQSSHTNSASIEEAGSGGASDATIL*