Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418870 | XP_013460967.3 | 97.291 | 406 | 11 | 0 | 1 | 406 | 1 | 406 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418870 | sp|Q9FXD8|PLY5_ARATH | 83.548 | 389 | 62 | 1 | 18 | 406 | 22 | 408 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418870 | G8A2G3 | 97.291 | 406 | 11 | 0 | 1 | 406 | 1 | 406 | 0.0 | 827 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0394500 | Msa0418870 | 0.802091 | 6.614429e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418870 | MtrunA17_Chr3g0116521 | 97.291 | 406 | 11 | 0 | 1 | 406 | 1 | 406 | 0.0 | 827 |
| Msa0418870 | MtrunA17_Chr4g0058051 | 90.078 | 383 | 37 | 1 | 25 | 406 | 25 | 407 | 0.0 | 700 |
| Msa0418870 | MtrunA17_Chr6g0458201 | 76.923 | 403 | 93 | 0 | 4 | 406 | 2 | 404 | 0.0 | 669 |
| Msa0418870 | MtrunA17_Chr3g0123321 | 79.284 | 391 | 78 | 2 | 16 | 406 | 16 | 403 | 0.0 | 609 |
| Msa0418870 | MtrunA17_Chr1g0169731 | 72.610 | 387 | 106 | 0 | 20 | 406 | 64 | 450 | 0.0 | 589 |
| Msa0418870 | MtrunA17_Chr7g0237761 | 70.725 | 386 | 113 | 0 | 21 | 406 | 59 | 444 | 0.0 | 585 |
| Msa0418870 | MtrunA17_Chr3g0123331 | 68.148 | 405 | 124 | 5 | 6 | 406 | 3 | 406 | 0.0 | 548 |
| Msa0418870 | MtrunA17_Chr1g0210321 | 61.728 | 405 | 144 | 4 | 5 | 398 | 3 | 407 | 0.0 | 524 |
| Msa0418870 | MtrunA17_Chr1g0180381 | 58.968 | 407 | 155 | 2 | 8 | 402 | 9 | 415 | 2.05e-180 | 510 |
| Msa0418870 | MtrunA17_Chr7g0264891 | 64.829 | 381 | 131 | 2 | 19 | 398 | 28 | 406 | 6.48e-178 | 504 |
| Msa0418870 | MtrunA17_Chr4g0060211 | 58.031 | 386 | 153 | 3 | 28 | 406 | 51 | 434 | 5.66e-165 | 469 |
| Msa0418870 | MtrunA17_Chr5g0416061 | 57.412 | 371 | 154 | 2 | 40 | 406 | 79 | 449 | 1.21e-155 | 446 |
| Msa0418870 | MtrunA17_Chr8g0362561 | 57.527 | 372 | 146 | 3 | 47 | 406 | 84 | 455 | 7.06e-155 | 445 |
| Msa0418870 | MtrunA17_Chr2g0288921 | 53.623 | 414 | 176 | 5 | 1 | 406 | 4 | 409 | 2.74e-154 | 442 |
| Msa0418870 | MtrunA17_Chr4g0075231 | 57.825 | 377 | 150 | 4 | 31 | 406 | 17 | 385 | 4.24e-153 | 437 |
| Msa0418870 | MtrunA17_Chr5g0416041 | 56.878 | 378 | 158 | 2 | 34 | 406 | 72 | 449 | 1.01e-150 | 434 |
| Msa0418870 | MtrunA17_Chr6g0452861 | 57.345 | 354 | 150 | 1 | 54 | 406 | 100 | 453 | 5.42e-147 | 425 |
| Msa0418870 | MtrunA17_Chr7g0216581 | 52.840 | 405 | 169 | 3 | 24 | 406 | 47 | 451 | 2.68e-143 | 415 |
| Msa0418870 | MtrunA17_Chr8g0373721 | 42.588 | 371 | 203 | 7 | 41 | 406 | 27 | 392 | 6.67e-95 | 290 |
| Msa0418870 | MtrunA17_Chr8g0373761 | 43.785 | 354 | 191 | 6 | 58 | 406 | 42 | 392 | 1.07e-94 | 289 |
| Msa0418870 | MtrunA17_Chr3g0089181 | 43.316 | 374 | 200 | 9 | 39 | 406 | 6 | 373 | 1.58e-93 | 285 |
| Msa0418870 | MtrunA17_Chr8g0373731 | 43.127 | 371 | 201 | 7 | 41 | 406 | 27 | 392 | 3.83e-88 | 272 |
| Msa0418870 | MtrunA17_Chr8g0373701 | 41.361 | 382 | 212 | 9 | 31 | 406 | 72 | 447 | 4.81e-87 | 271 |
| Msa0418870 | MtrunA17_Chr5g0414541 | 43.978 | 357 | 186 | 8 | 58 | 406 | 41 | 391 | 1.57e-84 | 263 |
| Msa0418870 | MtrunA17_Chr5g0403391 | 43.380 | 355 | 191 | 7 | 58 | 406 | 41 | 391 | 3.09e-84 | 262 |
| Msa0418870 | MtrunA17_Chr5g0403481 | 43.662 | 355 | 190 | 7 | 58 | 406 | 41 | 391 | 1.47e-83 | 260 |
| Msa0418870 | MtrunA17_Chr5g0403461 | 43.662 | 355 | 190 | 7 | 58 | 406 | 41 | 391 | 1.47e-83 | 260 |
| Msa0418870 | MtrunA17_Chr5g0403491 | 43.662 | 355 | 190 | 7 | 58 | 406 | 41 | 391 | 1.47e-83 | 260 |
| Msa0418870 | MtrunA17_Chr5g0403411 | 43.099 | 355 | 192 | 7 | 58 | 406 | 41 | 391 | 8.99e-81 | 253 |
| Msa0418870 | MtrunA17_Chr4g0031851 | 43.408 | 311 | 170 | 5 | 97 | 404 | 28 | 335 | 3.93e-80 | 251 |
| Msa0418870 | MtrunA17_Chr3g0113551 | 60.335 | 179 | 55 | 2 | 152 | 328 | 122 | 286 | 6.00e-70 | 223 |
| Msa0418870 | MtrunA17_Chr1g0183941 | 42.222 | 270 | 148 | 4 | 133 | 398 | 1 | 266 | 2.00e-65 | 209 |
| Msa0418870 | MtrunA17_Chr2g0288901 | 53.205 | 156 | 68 | 3 | 252 | 406 | 5 | 156 | 2.84e-50 | 166 |
| Msa0418870 | MtrunA17_Chr6g0481851 | 37.895 | 285 | 119 | 7 | 91 | 373 | 6 | 234 | 3.87e-48 | 164 |
| Msa0418870 | MtrunA17_Chr1g0212931 | 36.301 | 292 | 160 | 6 | 71 | 361 | 9 | 275 | 4.02e-46 | 161 |
| Msa0418870 | MtrunA17_Chr2g0288911 | 61.475 | 122 | 46 | 1 | 133 | 253 | 1 | 122 | 3.27e-45 | 152 |
| Msa0418870 | MtrunA17_Chr1g0182021 | 36.271 | 295 | 162 | 6 | 68 | 361 | 55 | 324 | 1.26e-40 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418870 | AT1G67750.1 | 83.548 | 389 | 62 | 1 | 18 | 406 | 22 | 408 | 0.0 | 660 |
| Msa0418870 | AT5G63180.1 | 78.250 | 400 | 85 | 1 | 9 | 406 | 33 | 432 | 0.0 | 657 |
| Msa0418870 | AT4G24780.2 | 81.281 | 406 | 73 | 3 | 2 | 406 | 5 | 408 | 0.0 | 653 |
| Msa0418870 | AT4G24780.1 | 81.281 | 406 | 73 | 3 | 2 | 406 | 5 | 408 | 0.0 | 653 |
| Msa0418870 | AT4G13710.1 | 70.483 | 393 | 112 | 1 | 18 | 406 | 78 | 470 | 0.0 | 613 |
| Msa0418870 | AT3G27400.2 | 73.105 | 409 | 105 | 2 | 2 | 406 | 9 | 416 | 0.0 | 612 |
| Msa0418870 | AT3G27400.1 | 73.105 | 409 | 105 | 2 | 2 | 406 | 5 | 412 | 0.0 | 612 |
| Msa0418870 | AT4G13710.2 | 70.483 | 393 | 112 | 1 | 18 | 406 | 59 | 451 | 0.0 | 611 |
| Msa0418870 | AT3G07010.1 | 69.853 | 408 | 116 | 1 | 6 | 406 | 9 | 416 | 0.0 | 595 |
| Msa0418870 | AT3G07010.2 | 73.210 | 377 | 101 | 0 | 30 | 406 | 7 | 383 | 0.0 | 584 |
| Msa0418870 | AT1G04680.1 | 71.429 | 385 | 106 | 1 | 26 | 406 | 45 | 429 | 0.0 | 577 |
| Msa0418870 | AT3G24670.1 | 71.391 | 381 | 109 | 0 | 26 | 406 | 60 | 440 | 0.0 | 575 |
| Msa0418870 | AT5G48900.1 | 71.040 | 404 | 109 | 1 | 11 | 406 | 14 | 417 | 0.0 | 573 |
| Msa0418870 | AT3G24230.1 | 67.436 | 390 | 122 | 2 | 21 | 406 | 63 | 451 | 0.0 | 566 |
| Msa0418870 | AT4G13210.2 | 70.942 | 382 | 110 | 1 | 26 | 406 | 57 | 438 | 0.0 | 554 |
| Msa0418870 | AT4G13210.1 | 70.942 | 382 | 110 | 1 | 26 | 406 | 20 | 401 | 0.0 | 552 |
| Msa0418870 | AT3G53190.1 | 62.103 | 409 | 138 | 3 | 7 | 398 | 6 | 414 | 0.0 | 512 |
| Msa0418870 | AT5G04310.3 | 61.307 | 398 | 139 | 2 | 14 | 398 | 40 | 435 | 3.08e-173 | 493 |
| Msa0418870 | AT5G04310.1 | 60.794 | 403 | 143 | 2 | 14 | 403 | 40 | 440 | 7.96e-172 | 491 |
| Msa0418870 | AT5G04310.2 | 60.794 | 403 | 143 | 2 | 14 | 403 | 40 | 440 | 7.96e-172 | 491 |
| Msa0418870 | AT3G54920.1 | 61.140 | 386 | 126 | 4 | 28 | 398 | 36 | 412 | 7.56e-171 | 488 |
| Msa0418870 | AT5G55720.1 | 55.919 | 397 | 163 | 4 | 11 | 406 | 7 | 392 | 3.78e-163 | 464 |
| Msa0418870 | AT1G11920.1 | 60.857 | 350 | 134 | 3 | 58 | 406 | 37 | 384 | 1.32e-153 | 439 |
| Msa0418870 | AT4G22090.1 | 59.429 | 350 | 138 | 3 | 58 | 406 | 47 | 393 | 8.44e-153 | 437 |
| Msa0418870 | AT4G22080.1 | 59.429 | 350 | 138 | 3 | 58 | 406 | 47 | 393 | 2.74e-152 | 436 |
| Msa0418870 | AT1G14420.1 | 54.047 | 383 | 163 | 3 | 30 | 406 | 84 | 459 | 4.66e-151 | 436 |
| Msa0418870 | AT2G02720.1 | 56.583 | 357 | 149 | 1 | 56 | 406 | 99 | 455 | 1.35e-150 | 434 |
| Msa0418870 | AT5G15110.1 | 57.183 | 355 | 150 | 2 | 54 | 406 | 118 | 472 | 4.25e-150 | 434 |
| Msa0418870 | AT3G01270.1 | 56.901 | 355 | 151 | 2 | 54 | 406 | 121 | 475 | 7.52e-148 | 428 |
| Msa0418870 | AT1G30350.1 | 57.265 | 351 | 134 | 3 | 56 | 406 | 34 | 368 | 2.07e-138 | 400 |
| Msa0418870 | AT5G09280.1 | 48.980 | 245 | 122 | 3 | 91 | 334 | 6 | 248 | 6.63e-76 | 238 |
| Msa0418870 | AT3G55140.1 | 38.462 | 286 | 150 | 6 | 77 | 361 | 16 | 276 | 6.23e-49 | 169 |
| Msa0418870 | AT3G09540.1 | 37.793 | 299 | 154 | 9 | 75 | 369 | 61 | 331 | 1.57e-44 | 159 |
| Msa0418870 | AT3G09540.3 | 37.458 | 299 | 151 | 10 | 75 | 369 | 61 | 327 | 1.53e-42 | 153 |
| Msa0418870 | AT3G55140.2 | 37.450 | 251 | 136 | 5 | 112 | 361 | 22 | 252 | 4.53e-40 | 145 |
| Msa0418870 | AT3G09540.2 | 36.179 | 246 | 131 | 6 | 75 | 319 | 61 | 281 | 3.82e-37 | 136 |
Find 130 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGAGAGGCTATATTAAT+TGG | 0.193356 | 3_2:-66718505 | Msa0418870:three_prime_UTR |
| TTAATTACCTGTTTACTTCT+TGG | 0.193806 | 3_2:+66720676 | None:intergenic |
| TCTTCAGCTAGGAGGAATTT+AGG | 0.197023 | 3_2:-66720137 | Msa0418870:CDS |
| TCTTTGGTGGAAGTCATATT+TGG | 0.206176 | 3_2:-66719635 | Msa0418870:CDS |
| TCTGTTTCCTTGACTGTTAA+TGG | 0.213252 | 3_2:+66718827 | None:intergenic |
| GGCGGAGTGTTCCGGGCTTT+GGG | 0.225037 | 3_2:+66719937 | None:intergenic |
| TGGCGGAGTGTTCCGGGCTT+TGG | 0.226614 | 3_2:+66719936 | None:intergenic |
| TCTTTGCTGAATCTGTTATT+AGG | 0.265440 | 3_2:+66718795 | None:intergenic |
| AACAATAAAACCAAAGAAAA+AGG | 0.279710 | 3_2:+66720762 | None:intergenic |
| CACGGCGTGGCGGAGTGTTC+CGG | 0.285846 | 3_2:+66719929 | None:intergenic |
| AAGATGCAGCAGAGAGTAAA+TGG | 0.299549 | 3_2:-66718758 | Msa0418870:CDS |
| GGGACTCGCCACGACATTTC+GGG | 0.320996 | 3_2:-66719692 | Msa0418870:CDS |
| AGGCTAGCAGATTGTGCAAT+TGG | 0.326051 | 3_2:-66720038 | Msa0418870:CDS |
| CTTTGGTGGAAGTCATATTT+GGG | 0.326835 | 3_2:-66719634 | Msa0418870:CDS |
| ACTTCTTGGACTACCAATTC+AGG | 0.336721 | 3_2:+66720690 | None:intergenic |
| TTTCGGGTGGAGGACTATTT+CGG | 0.338977 | 3_2:-66719676 | Msa0418870:CDS |
| TGAAGGAAAAGTAAATTTAA+AGG | 0.343034 | 3_2:+66718428 | None:intergenic |
| ACGGCGTGGCGGAGTGTTCC+GGG | 0.343761 | 3_2:+66719930 | None:intergenic |
| CTTCAGCTAGGAGGAATTTA+GGG | 0.346491 | 3_2:-66720136 | Msa0418870:CDS |
| ACCTGTTCAAAATCCTGAAT+TGG | 0.347858 | 3_2:-66720703 | Msa0418870:CDS |
| CACCTCCAACAATCATCAAT+TGG | 0.361226 | 3_2:+66720089 | None:intergenic |
| AGGGACTCGCCACGACATTT+CGG | 0.363710 | 3_2:-66719693 | Msa0418870:CDS |
| AACTCTTACAAAACAATTGA+TGG | 0.365900 | 3_2:-66719834 | Msa0418870:CDS |
| ACATATACATGATTGTAAAC+AGG | 0.370841 | 3_2:-66719733 | Msa0418870:CDS |
| GCAGATTGTGCAATTGGGTT+TGG | 0.376680 | 3_2:-66720032 | Msa0418870:CDS |
| CACTGGGAAATGTATGCTAT+TGG | 0.377712 | 3_2:-66718867 | Msa0418870:CDS |
| GCAAGACCATCTTCTATTGT+TGG | 0.381690 | 3_2:-66718627 | Msa0418870:CDS |
| GAGGTCAGAGGGAGACTTAA+TGG | 0.383746 | 3_2:-66718721 | Msa0418870:CDS |
| GTTCCGGGCTTTGGGGTCAC+TGG | 0.389681 | 3_2:+66719945 | None:intergenic |
| CATGATAAAGTCATGTTGTT+AGG | 0.390194 | 3_2:-66719516 | Msa0418870:CDS |
| GGTGATGGTGTGTCCATCTT+TGG | 0.394597 | 3_2:-66719651 | Msa0418870:CDS |
| GAGGGAGACTTAATGGTAAA+TGG | 0.395603 | 3_2:-66718714 | Msa0418870:CDS |
| GGTGCTAGTGTGCACATTGC+TGG | 0.417204 | 3_2:-66719807 | Msa0418870:CDS |
| TGATCCAAGTGGAACCGTTA+TGG | 0.421691 | 3_2:-66719908 | Msa0418870:CDS |
| GGAACACTTAATTGTAAGAA+AGG | 0.422030 | 3_2:-66718585 | Msa0418870:CDS |
| TAATTTGATCACCATGTCTC+TGG | 0.422429 | 3_2:+66719875 | None:intergenic |
| TCCTTGCTAGCTACTTGATA+AGG | 0.433942 | 3_2:-66718559 | Msa0418870:exon |
| TGGTAGTCCAAGAAGTAAAC+AGG | 0.437264 | 3_2:-66720683 | Msa0418870:intron |
| GTCACAAATATTATTATCCA+TGG | 0.440172 | 3_2:-66719759 | Msa0418870:CDS |
| GGTTTGATTGATGCTATTCA+TGG | 0.441763 | 3_2:-66719579 | Msa0418870:CDS |
| GCAATGGTAGCTAGCTTGAA+TGG | 0.451105 | 3_2:+66718535 | None:intergenic |
| GTAAATGGAAACATTGGAAC+TGG | 0.451874 | 3_2:-66718743 | Msa0418870:CDS |
| GGCTAGCAGATTGTGCAATT+GGG | 0.457108 | 3_2:-66720037 | Msa0418870:CDS |
| ACTCCAATTGGGAAAAGAAC+AGG | 0.464333 | 3_2:-66720064 | Msa0418870:CDS |
| TCTTTGTCTAATTGTGAAGA+TGG | 0.466392 | 3_2:-66719600 | Msa0418870:CDS |
| GTTGGAGGTGTGACTCCAAT+TGG | 0.466765 | 3_2:-66720076 | Msa0418870:CDS |
| GAAACCCAATTGATGATTGT+TGG | 0.470361 | 3_2:-66720094 | Msa0418870:CDS |
| GGTTCCATTACAGTTGGTGC+TGG | 0.474066 | 3_2:-66718606 | Msa0418870:CDS |
| ACCTCCAACAATCATCAATT+GGG | 0.481818 | 3_2:+66720090 | None:intergenic |
| ATTGTTGGTTCCATTACAGT+TGG | 0.483752 | 3_2:-66718612 | Msa0418870:CDS |
| AAAAGGTGTGTTTGTCATGT+TGG | 0.488133 | 3_2:+66720779 | None:intergenic |
| AATATGACTTCCACCAAAGA+TGG | 0.489976 | 3_2:+66719638 | None:intergenic |
| AACAGGTGAAGAGGAAATGA+GGG | 0.491812 | 3_2:+66720719 | None:intergenic |
| TGTTCCAGCACCAACTGTAA+TGG | 0.496182 | 3_2:+66718602 | None:intergenic |
| AAAGGTGTGTTTGTCATGTT+GGG | 0.496413 | 3_2:+66720780 | None:intergenic |
| GAGGAGAGGCTATATTAATT+GGG | 0.496523 | 3_2:-66718504 | Msa0418870:three_prime_UTR |
| TTTCCTTGACTGTTAATGGT+TGG | 0.499871 | 3_2:+66718831 | None:intergenic |
| TGAACAATGACTACACTCAC+TGG | 0.504021 | 3_2:-66718884 | Msa0418870:CDS |
| GTGTGTTTGTCATGTTGGGC+AGG | 0.508839 | 3_2:+66720784 | None:intergenic |
| AAGCTAGCTACCATTGCAAA+AGG | 0.514026 | 3_2:-66718529 | Msa0418870:three_prime_UTR |
| CATTGGAACTGGAGGTCAGA+GGG | 0.520043 | 3_2:-66718732 | Msa0418870:CDS |
| ATAGAGAAAATGAGAGAAGG+AGG | 0.521314 | 3_2:+66720813 | None:intergenic |
| GAACAGGTGAAGAGGAAATG+AGG | 0.522796 | 3_2:+66720718 | None:intergenic |
| TGGGAAATGTATGCTATTGG+AGG | 0.524720 | 3_2:-66718864 | Msa0418870:CDS |
| CTTACCGTTCTTTCCACCAA+TGG | 0.525507 | 3_2:+66720001 | None:intergenic |
| GACCTAGGTTATTATATATG+TGG | 0.529287 | 3_2:-66718464 | Msa0418870:three_prime_UTR |
| CGCCACGACATTTCGGGTGG+AGG | 0.530998 | 3_2:-66719686 | Msa0418870:CDS |
| CTAACAACATGACTTTATCA+TGG | 0.540491 | 3_2:+66719517 | None:intergenic |
| TTGGAGGTGTGACTCCAATT+GGG | 0.543250 | 3_2:-66720075 | Msa0418870:CDS |
| TTATCCATAACGGTTCCACT+TGG | 0.543978 | 3_2:+66719904 | None:intergenic |
| AATCCAGTGACCCCAAAGCC+CGG | 0.550332 | 3_2:-66719948 | Msa0418870:CDS |
| CAGAGAGTAAATGGAAACAT+TGG | 0.552513 | 3_2:-66718749 | Msa0418870:CDS |
| GGTTTCCACTCCCACAGGAT+AGG | 0.552543 | 3_2:+66720111 | None:intergenic |
| GGGTACCTATCCTGTGGGAG+TGG | 0.554154 | 3_2:-66720116 | Msa0418870:CDS |
| ATGGAACCAACAATAGAAGA+TGG | 0.556854 | 3_2:+66718621 | None:intergenic |
| GACTCGTTCAAAGGATGCCA+AGG | 0.558108 | 3_2:-66719425 | Msa0418870:intron |
| AATGCCATTGGTGGAAAGAA+CGG | 0.561450 | 3_2:-66720005 | Msa0418870:CDS |
| AATTGGGTTTCCACTCCCAC+AGG | 0.565341 | 3_2:+66720106 | None:intergenic |
| AGGACTATTTCGGACGGTGA+TGG | 0.567690 | 3_2:-66719666 | Msa0418870:CDS |
| TACAAAACAATTGATGGCAG+AGG | 0.573617 | 3_2:-66719828 | Msa0418870:CDS |
| TTGGTGAAGGACTCGTTCAA+AGG | 0.573631 | 3_2:-66719434 | Msa0418870:CDS |
| AAATCAATGCCTCTTCAGCT+AGG | 0.575542 | 3_2:-66720148 | Msa0418870:CDS |
| TCCTTATCAAGTAGCTAGCA+AGG | 0.575610 | 3_2:+66718558 | None:intergenic |
| CATATACATGATTGTAAACA+GGG | 0.578640 | 3_2:-66719732 | Msa0418870:CDS |
| GCTACCATTGCAAAAGGAGG+AGG | 0.578824 | 3_2:-66718523 | Msa0418870:three_prime_UTR |
| TAAATTCCTCCTAGCTGAAG+AGG | 0.581795 | 3_2:+66720139 | None:intergenic |
| TACATGATTGTAAACAGGGT+GGG | 0.581968 | 3_2:-66719728 | Msa0418870:CDS |
| TTTGGCAAGAATGCCATTGG+TGG | 0.582493 | 3_2:-66720014 | Msa0418870:CDS |
| TAACGGTTCCACTTGGATCA+CGG | 0.585307 | 3_2:+66719911 | None:intergenic |
| GGGTTTGGCAAGAATGCCAT+TGG | 0.590787 | 3_2:-66720017 | Msa0418870:CDS |
| AATCATGTATATGTATCCCA+TGG | 0.591236 | 3_2:+66719742 | None:intergenic |
| TTTCTAAGAGTAACAAGTGG+AGG | 0.593213 | 3_2:+66718310 | None:intergenic |
| ATTTATGTTGTAACCGACGC+AGG | 0.594657 | 3_2:-66719978 | Msa0418870:CDS |
| AATCCAACCATTAACAGTCA+AGG | 0.601114 | 3_2:-66718834 | Msa0418870:CDS |
| TCTATAGAGAAAATGAGAGA+AGG | 0.601223 | 3_2:+66720810 | None:intergenic |
| AGCTCTTGCATAGCTAGAAG+AGG | 0.604553 | 3_2:+66718662 | None:intergenic |
| TCACAAATATTATTATCCAT+GGG | 0.605977 | 3_2:-66719758 | Msa0418870:CDS |
| GATGGTGTGTCCATCTTTGG+TGG | 0.609344 | 3_2:-66719648 | Msa0418870:CDS |
| GAACGAGTCCTTCACCAAAG+TGG | 0.610794 | 3_2:+66719439 | None:intergenic |
| GGGTGGGAATGCTATGGTGA+GGG | 0.612544 | 3_2:-66719712 | Msa0418870:CDS |
| ACCCAATTGATGATTGTTGG+AGG | 0.614236 | 3_2:-66720091 | Msa0418870:CDS |
| GTCCTCCACCCGAAATGTCG+TGG | 0.614700 | 3_2:+66719684 | None:intergenic |
| ATTGGGAAAAGAACAGGCAA+AGG | 0.614782 | 3_2:-66720058 | Msa0418870:CDS |
| AATGGAAACATTGGAACTGG+AGG | 0.615967 | 3_2:-66718740 | Msa0418870:CDS |
| GAACAATGACTACACTCACT+GGG | 0.618750 | 3_2:-66718883 | Msa0418870:CDS |
| AATTTAGGGTACCTATCCTG+TGG | 0.621502 | 3_2:-66720122 | Msa0418870:CDS |
| TCAATGCCTCTTCAGCTAGG+AGG | 0.622703 | 3_2:-66720145 | Msa0418870:CDS |
| GCGGAGTGTTCCGGGCTTTG+GGG | 0.633281 | 3_2:+66719938 | None:intergenic |
| TAATAACAGATTCAGCAAAG+AGG | 0.633285 | 3_2:-66718793 | Msa0418870:CDS |
| CTAGCTACCATTGCAAAAGG+AGG | 0.635067 | 3_2:-66718526 | Msa0418870:three_prime_UTR |
| CCGCCACGCCGTGATCCAAG+TGG | 0.637376 | 3_2:-66719919 | Msa0418870:CDS |
| CATTGCAAAAGGAGGAGGAG+AGG | 0.642672 | 3_2:-66718518 | Msa0418870:three_prime_UTR |
| GCTAGTGTGCACATTGCTGG+TGG | 0.645766 | 3_2:-66719804 | Msa0418870:CDS |
| AGGGTGGGAATGCTATGGTG+AGG | 0.647184 | 3_2:-66719713 | Msa0418870:CDS |
| TGGATTGTCATCACCTGCGT+CGG | 0.648173 | 3_2:+66719965 | None:intergenic |
| TAAACAGGGTGGGAATGCTA+TGG | 0.648547 | 3_2:-66719718 | Msa0418870:CDS |
| TGTAGTCATTGTTCACCACA+TGG | 0.650209 | 3_2:+66718892 | None:intergenic |
| GGTGAAGAGGAAATGAGGGT+AGG | 0.652258 | 3_2:+66720723 | None:intergenic |
| ATTTAGGGTACCTATCCTGT+GGG | 0.652383 | 3_2:-66720121 | Msa0418870:CDS |
| ACATATTGTATAGTAATGCA+TGG | 0.653013 | 3_2:+66719780 | None:intergenic |
| ATTGTTAGAGATCGTTATAG+CGG | 0.654687 | 3_2:+66719551 | None:intergenic |
| GGGTAGGCATGAAAAGAGAG+AGG | 0.656379 | 3_2:+66720739 | None:intergenic |
| GACCACATATATAATAACCT+AGG | 0.667252 | 3_2:+66718462 | None:intergenic |
| CCACTTGGATCACGGCGTGG+CGG | 0.674549 | 3_2:+66719919 | None:intergenic |
| ACTCGCCACGACATTTCGGG+TGG | 0.683178 | 3_2:-66719689 | Msa0418870:CDS |
| ACATTGGAACTGGAGGTCAG+AGG | 0.683344 | 3_2:-66718733 | Msa0418870:CDS |
| GTTCCACTTGGATCACGGCG+TGG | 0.683949 | 3_2:+66719916 | None:intergenic |
| GGGTGGAGGACTATTTCGGA+CGG | 0.687742 | 3_2:-66719672 | Msa0418870:CDS |
| ATACATGATTGTAAACAGGG+TGG | 0.725437 | 3_2:-66719729 | Msa0418870:CDS |
| TAGGCTTGGATATTTCCATG+TGG | 0.730926 | 3_2:-66718907 | Msa0418870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAGCAAATTTATAT+AGG | + | chr3_2:66718919-66718938 | None:intergenic | 10.0% |
| !! | AAAATGTTTACAAATATTTA+AGG | - | chr3_2:66719984-66720003 | Msa0418870:CDS | 10.0% |
| !!! | AATTTTTCGTAAATATTTTT+AGG | + | chr3_2:66720159-66720178 | None:intergenic | 10.0% |
| !! | ATAATTAAGAAAAAAGAAAA+AGG | + | chr3_2:66720696-66720715 | None:intergenic | 10.0% |
| !!! | ATAAATTTGCTTTATATTGT+AGG | - | chr3_2:66718921-66718940 | Msa0418870:intron | 15.0% |
| !!! | TATAATCAATTTTATTACCT+TGG | + | chr3_2:66719688-66719707 | None:intergenic | 15.0% |
| !! | TAATAACATTCAATTTCATA+AGG | - | chr3_2:66719727-66719746 | Msa0418870:CDS | 15.0% |
| !! | AATAACATTCAATTTCATAA+GGG | - | chr3_2:66719728-66719747 | Msa0418870:CDS | 15.0% |
| !! | AAATATTTACGAAAAATTAC+AGG | - | chr3_2:66720161-66720180 | Msa0418870:intron | 15.0% |
| !! | AACAATAAAACCAAAGAAAA+AGG | + | chr3_2:66718334-66718353 | None:intergenic | 20.0% |
| !! | CAATTATAGTGCATATATAA+TGG | + | chr3_2:66718521-66718540 | None:intergenic | 20.0% |
| !! | TCAAAATGACATTACTTATA+TGG | - | chr3_2:66718768-66718787 | Msa0418870:CDS | 20.0% |
| !! | TGTATGCAATTAATTAATGT+TGG | - | chr3_2:66718887-66718906 | Msa0418870:CDS | 20.0% |
| !! | TCACAAATATTATTATCCAT+GGG | - | chr3_2:66719335-66719354 | Msa0418870:intron | 20.0% |
| !!! | TACTTTTAGAGGAATAATAT+TGG | + | chr3_2:66719960-66719979 | None:intergenic | 20.0% |
| !!! | ATATTATTCCTCTAAAAGTA+TGG | - | chr3_2:66719960-66719979 | Msa0418870:CDS | 20.0% |
| !!! | TATTATTCCTCTAAAAGTAT+GGG | - | chr3_2:66719961-66719980 | Msa0418870:CDS | 20.0% |
| !!! | AAAAAGTATTTAAAAGACCT+AGG | - | chr3_2:66720614-66720633 | Msa0418870:intron | 20.0% |
| !! | TGAAGGAAAAGTAAATTTAA+AGG | + | chr3_2:66720668-66720687 | None:intergenic | 20.0% |
| ! | TTAATTACCTGTTTACTTCT+TGG | + | chr3_2:66718420-66718439 | None:intergenic | 25.0% |
| ! | AACTCTTACAAAACAATTGA+TGG | - | chr3_2:66719259-66719278 | Msa0418870:intron | 25.0% |
| ! | ACATATTGTATAGTAATGCA+TGG | + | chr3_2:66719316-66719335 | None:intergenic | 25.0% |
| ! | GTCACAAATATTATTATCCA+TGG | - | chr3_2:66719334-66719353 | Msa0418870:intron | 25.0% |
| ! | ACATATACATGATTGTAAAC+AGG | - | chr3_2:66719360-66719379 | Msa0418870:intron | 25.0% |
| ! | CATATACATGATTGTAAACA+GGG | - | chr3_2:66719361-66719380 | Msa0418870:intron | 25.0% |
| !!! | ACAACATATTTTTTGAGTGA+TGG | - | chr3_2:66719763-66719782 | Msa0418870:CDS | 25.0% |
| !! | ATTGTCTATTAGTTAGTTTG+TGG | - | chr3_2:66719932-66719951 | Msa0418870:CDS | 25.0% |
| !!! | TTGTCTATTAGTTAGTTTGT+GGG | - | chr3_2:66719933-66719952 | Msa0418870:CDS | 25.0% |
| ! | TAAGAAAAAAGAAAAAGGAG+AGG | + | chr3_2:66720691-66720710 | None:intergenic | 25.0% |
| TCTATAGAGAAAATGAGAGA+AGG | + | chr3_2:66718286-66718305 | None:intergenic | 30.0% | |
| AAGTCTCTAGCATATACATA+TGG | + | chr3_2:66718462-66718481 | None:intergenic | 30.0% | |
| AACCAAGTGTTAGAAATGTT+AGG | - | chr3_2:66718675-66718694 | Msa0418870:CDS | 30.0% | |
| TTAGAAATGTTAGGTCACTA+GGG | - | chr3_2:66718684-66718703 | Msa0418870:CDS | 30.0% | |
| AAAAACCAAACGTATACACT+AGG | - | chr3_2:66718728-66718747 | Msa0418870:CDS | 30.0% | |
| AAAACCAAACGTATACACTA+GGG | - | chr3_2:66718729-66718748 | Msa0418870:CDS | 30.0% | |
| !!! | AAAAGTGTCAAATGTTTTGC+AGG | + | chr3_2:66718810-66718829 | None:intergenic | 30.0% |
| CAAAAAGTCTAATGCAATGT+TGG | + | chr3_2:66718869-66718888 | None:intergenic | 30.0% | |
| CTGGCAAAAATTATCCATAA+CGG | + | chr3_2:66719202-66719221 | None:intergenic | 30.0% | |
| AATCATGTATATGTATCCCA+TGG | + | chr3_2:66719354-66719373 | None:intergenic | 30.0% | |
| TCTTTGTCTAATTGTGAAGA+TGG | - | chr3_2:66719493-66719512 | Msa0418870:CDS | 30.0% | |
| ATTGTTAGAGATCGTTATAG+CGG | + | chr3_2:66719545-66719564 | None:intergenic | 30.0% | |
| CTAACAACATGACTTTATCA+TGG | + | chr3_2:66719579-66719598 | None:intergenic | 30.0% | |
| CATGATAAAGTCATGTTGTT+AGG | - | chr3_2:66719577-66719596 | Msa0418870:CDS | 30.0% | |
| !! | ACAATTGCTTTTAACCACTT+TGG | - | chr3_2:66719640-66719659 | Msa0418870:CDS | 30.0% |
| TTAGTGACATACTCTAATTG+CGG | - | chr3_2:66719833-66719852 | Msa0418870:CDS | 30.0% | |
| ! | ACATTTTCCCATACTTTTAG+AGG | + | chr3_2:66719971-66719990 | None:intergenic | 30.0% |
| TTACAAATATTTAAGGACGC+TGG | - | chr3_2:66719991-66720010 | Msa0418870:CDS | 30.0% | |
| TTACGAAAAATTACAGGTGT+AGG | - | chr3_2:66720167-66720186 | Msa0418870:intron | 30.0% | |
| TCTTTGCTGAATCTGTTATT+AGG | + | chr3_2:66720301-66720320 | None:intergenic | 30.0% | |
| TAATAACAGATTCAGCAAAG+AGG | - | chr3_2:66720300-66720319 | Msa0418870:intron | 30.0% | |
| GGAACACTTAATTGTAAGAA+AGG | - | chr3_2:66720508-66720527 | Msa0418870:intron | 30.0% | |
| GACCTAGGTTATTATATATG+TGG | - | chr3_2:66720629-66720648 | Msa0418870:intron | 30.0% | |
| GACCACATATATAATAACCT+AGG | + | chr3_2:66720634-66720653 | None:intergenic | 30.0% | |
| !! | TGTTTTCTAAGAGTAACAAG+TGG | + | chr3_2:66720789-66720808 | None:intergenic | 30.0% |
| ATAGAGAAAATGAGAGAAGG+AGG | + | chr3_2:66718283-66718302 | None:intergenic | 35.0% | |
| ! | AAAGGTGTGTTTGTCATGTT+GGG | + | chr3_2:66718316-66718335 | None:intergenic | 35.0% |
| ! | AAAAGGTGTGTTTGTCATGT+TGG | + | chr3_2:66718317-66718336 | None:intergenic | 35.0% |
| ! | GACAAACACACCTTTTTCTT+TGG | - | chr3_2:66718321-66718340 | Msa0418870:three_prime_UTR | 35.0% |
| ACCTGTTCAAAATCCTGAAT+TGG | - | chr3_2:66718390-66718409 | Msa0418870:three_prime_UTR | 35.0% | |
| ! | ACCAATTCAGGATTTTGAAC+AGG | + | chr3_2:66718394-66718413 | None:intergenic | 35.0% |
| AGCATATACATATGGATCAG+TGG | + | chr3_2:66718454-66718473 | None:intergenic | 35.0% | |
| GACCTAACATTTCTAACACT+TGG | + | chr3_2:66718680-66718699 | None:intergenic | 35.0% | |
| GTTAGAAATGTTAGGTCACT+AGG | - | chr3_2:66718683-66718702 | Msa0418870:CDS | 35.0% | |
| ! | GAAACCCAATTGATGATTGT+TGG | - | chr3_2:66718999-66719018 | Msa0418870:intron | 35.0% |
| ACCTCCAACAATCATCAATT+GGG | + | chr3_2:66719006-66719025 | None:intergenic | 35.0% | |
| ! | GATAATTTTTGCCAGAGACA+TGG | - | chr3_2:66719207-66719226 | Msa0418870:intron | 35.0% |
| TAATTTGATCACCATGTCTC+TGG | + | chr3_2:66719221-66719240 | None:intergenic | 35.0% | |
| ! | TACAAAACAATTGATGGCAG+AGG | - | chr3_2:66719265-66719284 | Msa0418870:intron | 35.0% |
| ATACATGATTGTAAACAGGG+TGG | - | chr3_2:66719364-66719383 | Msa0418870:intron | 35.0% | |
| TACATGATTGTAAACAGGGT+GGG | - | chr3_2:66719365-66719384 | Msa0418870:intron | 35.0% | |
| AATATGACTTCCACCAAAGA+TGG | + | chr3_2:66719458-66719477 | None:intergenic | 35.0% | |
| TCTTTGGTGGAAGTCATATT+TGG | - | chr3_2:66719458-66719477 | Msa0418870:CDS | 35.0% | |
| CTTTGGTGGAAGTCATATTT+GGG | - | chr3_2:66719459-66719478 | Msa0418870:CDS | 35.0% | |
| GGTTTGATTGATGCTATTCA+TGG | - | chr3_2:66719514-66719533 | Msa0418870:CDS | 35.0% | |
| ! | AAAGGTGCACAAATCTATGT+AGG | - | chr3_2:66719873-66719892 | Msa0418870:CDS | 35.0% |
| AAGGTGCACAAATCTATGTA+GGG | - | chr3_2:66719874-66719893 | Msa0418870:CDS | 35.0% | |
| AAAAATTACAGGTGTAGGCT+TGG | - | chr3_2:66720172-66720191 | Msa0418870:intron | 35.0% | |
| AATCCAACCATTAACAGTCA+AGG | - | chr3_2:66720259-66720278 | Msa0418870:intron | 35.0% | |
| TTTCCTTGACTGTTAATGGT+TGG | + | chr3_2:66720265-66720284 | None:intergenic | 35.0% | |
| TCTGTTTCCTTGACTGTTAA+TGG | + | chr3_2:66720269-66720288 | None:intergenic | 35.0% | |
| CAGAGAGTAAATGGAAACAT+TGG | - | chr3_2:66720344-66720363 | Msa0418870:intron | 35.0% | |
| GTAAATGGAAACATTGGAAC+TGG | - | chr3_2:66720350-66720369 | Msa0418870:intron | 35.0% | |
| ATGGAACCAACAATAGAAGA+TGG | + | chr3_2:66720475-66720494 | None:intergenic | 35.0% | |
| !! | ATTGTTGGTTCCATTACAGT+TGG | - | chr3_2:66720481-66720500 | Msa0418870:intron | 35.0% |
| GAGGAGAGGCTATATTAATT+GGG | - | chr3_2:66720589-66720608 | Msa0418870:intron | 35.0% | |
| AAAAGAAAAAGGAGAGGTGA+AGG | + | chr3_2:66720685-66720704 | None:intergenic | 35.0% | |
| ! | TTTCTAAGAGTAACAAGTGG+AGG | + | chr3_2:66720786-66720805 | None:intergenic | 35.0% |
| AACAGGTGAAGAGGAAATGA+GGG | + | chr3_2:66718377-66718396 | None:intergenic | 40.0% | |
| ! | AGGATTTTGAACAGGTGAAG+AGG | + | chr3_2:66718386-66718405 | None:intergenic | 40.0% |
| ACTTCTTGGACTACCAATTC+AGG | + | chr3_2:66718406-66718425 | None:intergenic | 40.0% | |
| TGGTAGTCCAAGAAGTAAAC+AGG | - | chr3_2:66718410-66718429 | Msa0418870:three_prime_UTR | 40.0% | |
| ! | TTTTCTCAGCCCAATGTGTT+TGG | + | chr3_2:66718712-66718731 | None:intergenic | 40.0% |
| TGTGAGTAAGAGTTCCACAT+GGG | + | chr3_2:66718837-66718856 | None:intergenic | 40.0% | |
| ATGTGAGTAAGAGTTCCACA+TGG | + | chr3_2:66718838-66718857 | None:intergenic | 40.0% | |
| AAATCAATGCCTCTTCAGCT+AGG | - | chr3_2:66718945-66718964 | Msa0418870:intron | 40.0% | |
| TAAATTCCTCCTAGCTGAAG+AGG | + | chr3_2:66718957-66718976 | None:intergenic | 40.0% | |
| TCTTCAGCTAGGAGGAATTT+AGG | - | chr3_2:66718956-66718975 | Msa0418870:intron | 40.0% | |
| CTTCAGCTAGGAGGAATTTA+GGG | - | chr3_2:66718957-66718976 | Msa0418870:intron | 40.0% | |
| ! | AATTTAGGGTACCTATCCTG+TGG | - | chr3_2:66718971-66718990 | Msa0418870:intron | 40.0% |
| ! | ATTTAGGGTACCTATCCTGT+GGG | - | chr3_2:66718972-66718991 | Msa0418870:intron | 40.0% |
| ! | ACCCAATTGATGATTGTTGG+AGG | - | chr3_2:66719002-66719021 | Msa0418870:intron | 40.0% |
| CACCTCCAACAATCATCAAT+TGG | + | chr3_2:66719007-66719026 | None:intergenic | 40.0% | |
| ACTCCAATTGGGAAAAGAAC+AGG | - | chr3_2:66719029-66719048 | Msa0418870:intron | 40.0% | |
| ! | TTGCCTGTTCTTTTCCCAAT+TGG | + | chr3_2:66719035-66719054 | None:intergenic | 40.0% |
| ATTGGGAAAAGAACAGGCAA+AGG | - | chr3_2:66719035-66719054 | Msa0418870:intron | 40.0% | |
| AATGCCATTGGTGGAAAGAA+CGG | - | chr3_2:66719088-66719107 | Msa0418870:intron | 40.0% | |
| ATTTATGTTGTAACCGACGC+AGG | - | chr3_2:66719115-66719134 | Msa0418870:intron | 40.0% | |
| TTATCCATAACGGTTCCACT+TGG | + | chr3_2:66719192-66719211 | None:intergenic | 40.0% | |
| ! | GCTTTTAACCACTTTGGTGA+AGG | - | chr3_2:66719646-66719665 | Msa0418870:CDS | 40.0% |
| GCAAACTCGTGCTAATTGAA+AGG | - | chr3_2:66719855-66719874 | Msa0418870:CDS | 40.0% | |
| TAGGCTTGGATATTTCCATG+TGG | - | chr3_2:66720186-66720205 | Msa0418870:intron | 40.0% | |
| TGTAGTCATTGTTCACCACA+TGG | + | chr3_2:66720204-66720223 | None:intergenic | 40.0% | |
| TGAACAATGACTACACTCAC+TGG | - | chr3_2:66720209-66720228 | Msa0418870:intron | 40.0% | |
| GAACAATGACTACACTCACT+GGG | - | chr3_2:66720210-66720229 | Msa0418870:intron | 40.0% | |
| CACTGGGAAATGTATGCTAT+TGG | - | chr3_2:66720226-66720245 | Msa0418870:intron | 40.0% | |
| TGGGAAATGTATGCTATTGG+AGG | - | chr3_2:66720229-66720248 | Msa0418870:intron | 40.0% | |
| AAGATGCAGCAGAGAGTAAA+TGG | - | chr3_2:66720335-66720354 | Msa0418870:intron | 40.0% | |
| AATGGAAACATTGGAACTGG+AGG | - | chr3_2:66720353-66720372 | Msa0418870:intron | 40.0% | |
| GAGGGAGACTTAATGGTAAA+TGG | - | chr3_2:66720379-66720398 | Msa0418870:intron | 40.0% | |
| GCAAGACCATCTTCTATTGT+TGG | - | chr3_2:66720466-66720485 | Msa0418870:intron | 40.0% | |
| TCCTTGCTAGCTACTTGATA+AGG | - | chr3_2:66720534-66720553 | Msa0418870:intron | 40.0% | |
| TCCTTATCAAGTAGCTAGCA+AGG | + | chr3_2:66720538-66720557 | None:intergenic | 40.0% | |
| AAGCTAGCTACCATTGCAAA+AGG | - | chr3_2:66720564-66720583 | Msa0418870:intron | 40.0% | |
| GGAGGAGAGGCTATATTAAT+TGG | - | chr3_2:66720588-66720607 | Msa0418870:intron | 40.0% | |
| GAACAGGTGAAGAGGAAATG+AGG | + | chr3_2:66718378-66718397 | None:intergenic | 45.0% | |
| ACTAGGGAGCCAAACACATT+GGG | - | chr3_2:66718700-66718719 | Msa0418870:CDS | 45.0% | |
| AGTGCCCTAGTGTATACGTT+TGG | + | chr3_2:66718736-66718755 | None:intergenic | 45.0% | |
| ! | TGACACTTTTCCATCCCATG+TGG | - | chr3_2:66718820-66718839 | Msa0418870:CDS | 45.0% |
| AGTAAGAGTTCCACATGGGA+TGG | + | chr3_2:66718833-66718852 | None:intergenic | 45.0% | |
| ! | TTGGAGGTGTGACTCCAATT+GGG | - | chr3_2:66719018-66719037 | Msa0418870:intron | 45.0% |
| AGGCTAGCAGATTGTGCAAT+TGG | - | chr3_2:66719055-66719074 | Msa0418870:intron | 45.0% | |
| GGCTAGCAGATTGTGCAATT+GGG | - | chr3_2:66719056-66719075 | Msa0418870:intron | 45.0% | |
| GCAGATTGTGCAATTGGGTT+TGG | - | chr3_2:66719061-66719080 | Msa0418870:intron | 45.0% | |
| TTTGGCAAGAATGCCATTGG+TGG | - | chr3_2:66719079-66719098 | Msa0418870:intron | 45.0% | |
| CTTACCGTTCTTTCCACCAA+TGG | + | chr3_2:66719095-66719114 | None:intergenic | 45.0% | |
| TAACGGTTCCACTTGGATCA+CGG | + | chr3_2:66719185-66719204 | None:intergenic | 45.0% | |
| TGATCCAAGTGGAACCGTTA+TGG | - | chr3_2:66719185-66719204 | Msa0418870:intron | 45.0% | |
| TAAACAGGGTGGGAATGCTA+TGG | - | chr3_2:66719375-66719394 | Msa0418870:intron | 45.0% | |
| ! | TTTCGGGTGGAGGACTATTT+CGG | - | chr3_2:66719417-66719436 | Msa0418870:intron | 45.0% |
| TTGGTGAAGGACTCGTTCAA+AGG | - | chr3_2:66719659-66719678 | Msa0418870:CDS | 45.0% | |
| ! | GGTGCATTTTTCACTGCATC+AGG | - | chr3_2:66720400-66720419 | Msa0418870:intron | 45.0% |
| ! | GCATTTTTCACTGCATCAGG+TGG | - | chr3_2:66720403-66720422 | Msa0418870:intron | 45.0% |
| ! | TTTTTCACTGCATCAGGTGG+TGG | - | chr3_2:66720406-66720425 | Msa0418870:intron | 45.0% |
| AGCTCTTGCATAGCTAGAAG+AGG | + | chr3_2:66720434-66720453 | None:intergenic | 45.0% | |
| TGTTCCAGCACCAACTGTAA+TGG | + | chr3_2:66720494-66720513 | None:intergenic | 45.0% | |
| ! | GCAATGGTAGCTAGCTTGAA+TGG | + | chr3_2:66720561-66720580 | None:intergenic | 45.0% |
| CTAGCTACCATTGCAAAAGG+AGG | - | chr3_2:66720567-66720586 | Msa0418870:intron | 45.0% | |
| GTGTGTTTGTCATGTTGGGC+AGG | + | chr3_2:66718312-66718331 | None:intergenic | 50.0% | |
| GGGTAGGCATGAAAAGAGAG+AGG | + | chr3_2:66718357-66718376 | None:intergenic | 50.0% | |
| GGTGAAGAGGAAATGAGGGT+AGG | + | chr3_2:66718373-66718392 | None:intergenic | 50.0% | |
| CACTAGGGAGCCAAACACAT+TGG | - | chr3_2:66718699-66718718 | Msa0418870:CDS | 50.0% | |
| TCAATGCCTCTTCAGCTAGG+AGG | - | chr3_2:66718948-66718967 | Msa0418870:intron | 50.0% | |
| AATTGGGTTTCCACTCCCAC+AGG | + | chr3_2:66718990-66719009 | None:intergenic | 50.0% | |
| ! | GTTGGAGGTGTGACTCCAAT+TGG | - | chr3_2:66719017-66719036 | Msa0418870:intron | 50.0% |
| GGGTTTGGCAAGAATGCCAT+TGG | - | chr3_2:66719076-66719095 | Msa0418870:intron | 50.0% | |
| TGGATTGTCATCACCTGCGT+CGG | + | chr3_2:66719131-66719150 | None:intergenic | 50.0% | |
| AGGACTATTTCGGACGGTGA+TGG | - | chr3_2:66719427-66719446 | Msa0418870:CDS | 50.0% | |
| ! | GGTGATGGTGTGTCCATCTT+TGG | - | chr3_2:66719442-66719461 | Msa0418870:CDS | 50.0% |
| GATGGTGTGTCCATCTTTGG+TGG | - | chr3_2:66719445-66719464 | Msa0418870:CDS | 50.0% | |
| GAACGAGTCCTTCACCAAAG+TGG | + | chr3_2:66719657-66719676 | None:intergenic | 50.0% | |
| GACTCGTTCAAAGGATGCCA+AGG | - | chr3_2:66719668-66719687 | Msa0418870:CDS | 50.0% | |
| ACATTGGAACTGGAGGTCAG+AGG | - | chr3_2:66720360-66720379 | Msa0418870:intron | 50.0% | |
| CATTGGAACTGGAGGTCAGA+GGG | - | chr3_2:66720361-66720380 | Msa0418870:intron | 50.0% | |
| GAGGTCAGAGGGAGACTTAA+TGG | - | chr3_2:66720372-66720391 | Msa0418870:intron | 50.0% | |
| ! | GGTTCCATTACAGTTGGTGC+TGG | - | chr3_2:66720487-66720506 | Msa0418870:intron | 50.0% |
| GCTACCATTGCAAAAGGAGG+AGG | - | chr3_2:66720570-66720589 | Msa0418870:intron | 50.0% | |
| ! | CTCTCCTCCTCCTTTTGCAA+TGG | + | chr3_2:66720577-66720596 | None:intergenic | 50.0% |
| CATTGCAAAAGGAGGAGGAG+AGG | - | chr3_2:66720575-66720594 | Msa0418870:intron | 50.0% | |
| GGTTTCCACTCCCACAGGAT+AGG | + | chr3_2:66718985-66719004 | None:intergenic | 55.0% | |
| AATCCAGTGACCCCAAAGCC+CGG | - | chr3_2:66719145-66719164 | Msa0418870:intron | 55.0% | |
| GGTGCTAGTGTGCACATTGC+TGG | - | chr3_2:66719286-66719305 | Msa0418870:intron | 55.0% | |
| GCTAGTGTGCACATTGCTGG+TGG | - | chr3_2:66719289-66719308 | Msa0418870:intron | 55.0% | |
| AGGGTGGGAATGCTATGGTG+AGG | - | chr3_2:66719380-66719399 | Msa0418870:intron | 55.0% | |
| GGGTGGGAATGCTATGGTGA+GGG | - | chr3_2:66719381-66719400 | Msa0418870:intron | 55.0% | |
| AGGGACTCGCCACGACATTT+CGG | - | chr3_2:66719400-66719419 | Msa0418870:intron | 55.0% | |
| GGGTGGAGGACTATTTCGGA+CGG | - | chr3_2:66719421-66719440 | Msa0418870:intron | 55.0% | |
| GGGTACCTATCCTGTGGGAG+TGG | - | chr3_2:66718977-66718996 | Msa0418870:intron | 60.0% | |
| GTTCCACTTGGATCACGGCG+TGG | + | chr3_2:66719180-66719199 | None:intergenic | 60.0% | |
| GGGACTCGCCACGACATTTC+GGG | - | chr3_2:66719401-66719420 | Msa0418870:intron | 60.0% | |
| ACTCGCCACGACATTTCGGG+TGG | - | chr3_2:66719404-66719423 | Msa0418870:intron | 60.0% | |
| GTCCTCCACCCGAAATGTCG+TGG | + | chr3_2:66719412-66719431 | None:intergenic | 60.0% | |
| !! | GTTCCGGGCTTTGGGGTCAC+TGG | + | chr3_2:66719151-66719170 | None:intergenic | 65.0% |
| ! | GCGGAGTGTTCCGGGCTTTG+GGG | + | chr3_2:66719158-66719177 | None:intergenic | 65.0% |
| ! | GGCGGAGTGTTCCGGGCTTT+GGG | + | chr3_2:66719159-66719178 | None:intergenic | 65.0% |
| ! | TGGCGGAGTGTTCCGGGCTT+TGG | + | chr3_2:66719160-66719179 | None:intergenic | 65.0% |
| CCACTTGGATCACGGCGTGG+CGG | + | chr3_2:66719177-66719196 | None:intergenic | 65.0% | |
| ! | CGCCACGACATTTCGGGTGG+AGG | - | chr3_2:66719407-66719426 | Msa0418870:intron | 65.0% |
| ! | ACGGCGTGGCGGAGTGTTCC+GGG | + | chr3_2:66719166-66719185 | None:intergenic | 70.0% |
| ! | CACGGCGTGGCGGAGTGTTC+CGG | + | chr3_2:66719167-66719186 | None:intergenic | 70.0% |
| CCGCCACGCCGTGATCCAAG+TGG | - | chr3_2:66719174-66719193 | Msa0418870:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 66718279 | 66720836 | 66718279 | ID=Msa0418870;Name=Msa0418870 |
| chr3_2 | mRNA | 66718279 | 66720836 | 66718279 | ID=Msa0418870-mRNA-1;Parent=Msa0418870;Name=Msa0418870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=40|1|1|1|1|1|3|293|406 |
| chr3_2 | exon | 66718279 | 66718932 | 66718279 | ID=Msa0418870-mRNA-1:exon:15423;Parent=Msa0418870-mRNA-1 |
| chr3_2 | exon | 66719426 | 66720172 | 66719426 | ID=Msa0418870-mRNA-1:exon:15422;Parent=Msa0418870-mRNA-1 |
| chr3_2 | exon | 66720684 | 66720836 | 66720684 | ID=Msa0418870-mRNA-1:exon:15421;Parent=Msa0418870-mRNA-1 |
| chr3_2 | five_prime_UTR | 66720797 | 66720836 | 66720797 | ID=Msa0418870-mRNA-1:five_prime_utr;Parent=Msa0418870-mRNA-1 |
| chr3_2 | CDS | 66720684 | 66720796 | 66720684 | ID=Msa0418870-mRNA-1:cds;Parent=Msa0418870-mRNA-1 |
| chr3_2 | CDS | 66719426 | 66720172 | 66719426 | ID=Msa0418870-mRNA-1:cds;Parent=Msa0418870-mRNA-1 |
| chr3_2 | CDS | 66718572 | 66718932 | 66718572 | ID=Msa0418870-mRNA-1:cds;Parent=Msa0418870-mRNA-1 |
| chr3_2 | three_prime_UTR | 66718279 | 66718571 | 66718279 | ID=Msa0418870-mRNA-1:three_prime_utr;Parent=Msa0418870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
