AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0419000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419000 MtrunA17_Chr3g0116631 90.102 293 23 2 1 289 1 291 0.0 529
Msa0419000 MtrunA17_Chr4g0058151 59.416 308 93 7 1 286 1 298 1.50e-110 322
Msa0419000 MtrunA17_Chr1g0181111 43.243 296 125 6 14 286 3 278 2.39e-59 190
Msa0419000 MtrunA17_Chr7g0267571 33.803 284 153 8 23 283 20 291 7.53e-43 149
Msa0419000 MtrunA17_Chr7g0267571 38.202 89 53 1 100 188 207 293 6.06e-12 65.1
Msa0419000 MtrunA17_Chr1g0168601 43.452 168 79 3 119 283 78 232 5.64e-41 142
Msa0419000 MtrunA17_Chr1g0168601 43.023 86 49 0 103 188 149 234 3.32e-14 70.5
Msa0419000 MtrunA17_Chr1g0177101 38.251 183 111 1 102 282 103 285 3.44e-39 139
Msa0419000 MtrunA17_Chr3g0087481 38.542 192 108 2 95 280 48 235 6.48e-35 126
Msa0419000 MtrunA17_Chr3g0087481 44.444 81 44 1 202 281 57 137 9.92e-16 74.7
Msa0419000 MtrunA17_Chr4g0035001 54.545 77 35 0 205 281 7 83 1.46e-25 99.4
Msa0419000 MtrunA17_Chr4g0035001 42.308 78 45 0 106 183 5 82 3.53e-14 68.9
Msa0419000 MtrunA17_Chr4g0058141 46.154 104 54 2 150 252 2 104 2.55e-24 94.4
Msa0419000 MtrunA17_Chr4g0035051 49.351 77 39 0 205 281 9 85 2.04e-23 92.4
Msa0419000 MtrunA17_Chr4g0035051 37.864 103 57 1 106 208 7 102 1.11e-14 68.9
Msa0419000 MtrunA17_Chr3g0132451 33.333 174 107 5 108 278 90 257 3.53e-23 96.3
Msa0419000 MtrunA17_Chr5g0411091 39.106 179 104 4 109 285 98 273 3.66e-23 97.1
Msa0419000 MtrunA17_Chr3g0110211 33.503 197 115 3 92 287 15 196 4.80e-23 97.4
Msa0419000 MtrunA17_Chr4g0061451 47.619 84 44 0 202 285 40 123 1.46e-22 94.4
Msa0419000 MtrunA17_Chr4g0061451 44.304 79 44 0 108 186 43 121 1.16e-14 72.4
Msa0419000 MtrunA17_Chr4g0035031 50.649 77 38 0 205 281 9 85 2.68e-21 89.0
Msa0419000 MtrunA17_Chr4g0035031 42.308 78 45 0 106 183 7 84 6.89e-14 68.9
Msa0419000 MtrunA17_Chr2g0328791 32.967 182 113 4 109 287 17 192 6.39e-21 92.0
Msa0419000 MtrunA17_Chr2g0288251 30.435 207 130 5 81 283 39 235 2.61e-20 90.1
Msa0419000 MtrunA17_Chr2g0288251 29.208 202 121 6 88 278 139 329 1.29e-13 70.5
Msa0419000 MtrunA17_Chr4g0074711 30.526 190 119 4 101 283 64 247 2.66e-20 90.1
Msa0419000 MtrunA17_Chr4g0074711 27.174 184 110 5 109 278 169 342 1.11e-12 67.8
Msa0419000 MtrunA17_Chr3g0121631 50.000 80 39 1 205 284 37 115 2.92e-20 85.1
Msa0419000 MtrunA17_Chr3g0121631 38.043 92 56 1 95 186 24 114 1.14e-12 64.3
Msa0419000 MtrunA17_Chr4g0070231 33.140 172 103 2 109 280 48 207 3.29e-20 89.7
Msa0419000 MtrunA17_Chr4g0070231 27.179 195 114 3 108 278 132 322 1.02e-11 64.7
Msa0419000 MtrunA17_Chr4g0045221 34.021 194 113 7 104 288 112 299 3.48e-20 90.1
Msa0419000 MtrunA17_Chr3g0086861 45.263 95 50 1 195 287 33 127 4.86e-20 89.4
Msa0419000 MtrunA17_Chr3g0086861 46.753 77 41 0 108 184 45 121 3.08e-14 72.4
Msa0419000 MtrunA17_Chr3g0119311 44.444 81 45 0 205 285 37 117 5.55e-20 84.0
Msa0419000 MtrunA17_Chr3g0120721 27.222 180 120 3 107 286 18 186 4.98e-19 85.9
Msa0419000 MtrunA17_Chr7g0219021 40.964 83 49 0 205 287 41 123 8.85e-19 83.6
Msa0419000 MtrunA17_Chr7g0219021 44.048 84 46 1 107 190 40 122 1.19e-14 72.0
Msa0419000 MtrunA17_Chr3g0101061 30.918 207 132 5 80 280 14 215 2.41e-18 84.7
Msa0419000 MtrunA17_Chr3g0101061 36.709 79 48 1 205 283 41 117 5.31e-11 62.8
Msa0419000 MtrunA17_Chr6g0465631 33.333 195 115 6 104 286 102 293 2.65e-18 84.7
Msa0419000 MtrunA17_Chr6g0465631 28.729 181 120 4 107 286 15 187 1.27e-11 64.7
Msa0419000 MtrunA17_Chr6g0466451 33.333 195 115 6 104 286 102 293 2.97e-18 84.7
Msa0419000 MtrunA17_Chr6g0466451 28.729 181 120 4 107 286 15 187 1.36e-11 64.7
Msa0419000 MtrunA17_Chr2g0278661 47.436 78 41 0 204 281 7 84 5.38e-18 81.3
Msa0419000 MtrunA17_Chr2g0278661 39.286 84 51 0 105 188 5 88 1.47e-13 68.9
Msa0419000 MtrunA17_Chr6g0466501 30.526 190 110 4 105 288 23 196 5.49e-18 84.0
Msa0419000 MtrunA17_Chr6g0466501 30.570 193 120 6 104 286 197 385 3.00e-16 79.0
Msa0419000 MtrunA17_Chr6g0466501 27.624 181 119 5 107 286 113 282 4.13e-11 63.2
Msa0419000 MtrunA17_Chr2g0290191 29.744 195 118 6 107 287 4 193 1.90e-17 82.0
Msa0419000 MtrunA17_Chr3g0133651 29.121 182 121 3 109 287 95 271 2.31e-17 81.6
Msa0419000 MtrunA17_Chr3g0133651 25.824 182 121 3 109 282 189 364 9.18e-13 68.2
Msa0419000 MtrunA17_Chr5g0447761 31.492 181 116 3 105 280 4 181 2.53e-17 81.6
Msa0419000 MtrunA17_Chr3g0139111 29.651 172 109 2 109 280 62 221 4.00e-17 80.9
Msa0419000 MtrunA17_Chr3g0139111 26.020 196 116 2 108 278 146 337 1.60e-13 70.5
Msa0419000 MtrunA17_Chr6g0465751 29.843 191 124 5 104 286 197 385 4.03e-17 81.3
Msa0419000 MtrunA17_Chr6g0465751 28.947 190 113 4 105 288 23 196 1.47e-16 79.7
Msa0419000 MtrunA17_Chr6g0465751 27.624 181 119 5 107 286 113 282 2.64e-11 63.9
Msa0419000 MtrunA17_Chr4g0050781 45.556 90 47 1 199 288 2 89 4.05e-17 78.2
Msa0419000 MtrunA17_Chr4g0050781 37.805 82 51 0 105 186 5 86 3.37e-12 64.3
Msa0419000 MtrunA17_Chr1g0210241 44.048 84 45 1 205 288 8 89 1.11e-16 78.2
Msa0419000 MtrunA17_Chr1g0210241 35.366 82 53 0 105 186 5 86 1.45e-11 63.5
Msa0419000 MtrunA17_Chr1g0153871 30.526 190 115 4 105 287 95 274 1.34e-16 79.3
Msa0419000 MtrunA17_Chr1g0153871 25.591 254 159 8 42 282 131 367 2.21e-14 72.8
Msa0419000 MtrunA17_Chr7g0265341 27.778 180 123 4 107 286 158 330 1.77e-16 79.3
Msa0419000 MtrunA17_Chr7g0265341 29.189 185 122 4 109 286 251 433 6.57e-15 74.7
Msa0419000 MtrunA17_Chr7g0265341 27.128 188 123 4 93 277 54 230 2.99e-13 69.7
Msa0419000 MtrunA17_Chr6g0465691 30.570 193 120 6 104 286 115 303 2.78e-16 79.0
Msa0419000 MtrunA17_Chr6g0465691 27.624 181 119 5 107 286 31 200 3.52e-11 63.5
Msa0419000 MtrunA17_Chr1g0179701 29.834 181 120 3 106 286 149 322 2.96e-16 78.6
Msa0419000 MtrunA17_Chr1g0179701 28.571 182 120 3 96 277 51 222 6.41e-16 77.8
Msa0419000 MtrunA17_Chr1g0179701 29.730 185 118 5 109 285 243 423 9.16e-14 71.2
Msa0419000 MtrunA17_Chr0c09g0493511 29.016 193 123 6 104 286 115 303 7.15e-16 77.4
Msa0419000 MtrunA17_Chr0c09g0493511 29.282 181 116 6 107 286 31 200 3.32e-11 63.5
Msa0419000 MtrunA17_Chr4g0044541 31.250 176 99 4 109 278 36 195 1.01e-15 77.4
Msa0419000 MtrunA17_Chr4g0044541 29.101 189 117 5 109 286 215 397 7.76e-14 71.6
Msa0419000 MtrunA17_Chr4g0044541 27.072 181 125 4 106 286 121 294 2.37e-12 67.0
Msa0419000 MtrunA17_Chr4g0018581 48.000 75 39 0 206 280 453 527 2.01e-15 76.3
Msa0419000 MtrunA17_Chr8g0344491 29.609 179 114 2 102 280 57 223 2.18e-15 75.9
Msa0419000 MtrunA17_Chr3g0135111 29.592 196 121 5 105 288 8 198 3.85e-15 74.7
Msa0419000 MtrunA17_Chr1g0153181 28.235 170 110 3 109 277 34 192 1.59e-14 73.6
Msa0419000 MtrunA17_Chr1g0153181 28.947 190 117 5 109 286 213 396 7.10e-14 71.6
Msa0419000 MtrunA17_Chr7g0219031 39.241 79 43 1 197 270 28 106 1.70e-14 68.6
Msa0419000 MtrunA17_Chr3g0134141 27.136 199 123 4 85 277 2 184 1.76e-14 73.6
Msa0419000 MtrunA17_Chr3g0134141 31.720 186 116 5 109 286 205 387 3.09e-14 72.8
Msa0419000 MtrunA17_Chr8g0360551 30.636 173 114 4 108 280 74 240 2.80e-14 72.8
Msa0419000 MtrunA17_Chr4g0045921 26.923 182 116 4 108 285 77 245 3.21e-14 72.0
Msa0419000 MtrunA17_Chr1g0212611 29.480 173 115 4 108 280 221 386 3.58e-14 72.4
Msa0419000 MtrunA17_Chr1g0186351 27.807 187 121 3 105 280 4 187 4.53e-14 72.0
Msa0419000 MtrunA17_Chr1g0201151 30.729 192 121 5 104 286 206 394 6.30e-14 72.0
Msa0419000 MtrunA17_Chr1g0201151 26.519 181 111 4 103 277 26 190 1.03e-11 65.1
Msa0419000 MtrunA17_Chr6g0449481 23.333 180 127 3 107 286 45 213 8.63e-14 70.9
Msa0419000 MtrunA17_Chr5g0402191 32.000 150 93 3 105 254 2 142 9.59e-14 70.9
Msa0419000 MtrunA17_Chr8g0375101 30.872 149 94 3 105 253 2 141 2.86e-13 69.3
Msa0419000 MtrunA17_Chr4g0026301 26.667 150 91 3 103 250 106 238 3.36e-13 69.3
Msa0419000 MtrunA17_Chr4g0068631 30.159 189 113 4 107 287 88 265 5.84e-13 68.9
Msa0419000 MtrunA17_Chr1g0201001 38.961 77 47 0 206 282 31 107 1.57e-12 67.4
Msa0419000 MtrunA17_Chr4g0013971 24.742 194 121 4 108 277 94 286 5.16e-12 65.9
Msa0419000 MtrunA17_Chr7g0266751 34.146 82 54 0 205 286 33 114 7.02e-12 62.0
Msa0419000 MtrunA17_Chr7g0266751 39.024 82 50 0 108 189 33 114 3.15e-11 60.1
Msa0419000 MtrunA17_Chr4g0031091 32.051 78 53 0 205 282 34 111 8.46e-12 60.8
Msa0419000 MtrunA17_Chr4g0042161 37.931 87 54 0 201 287 48 134 5.67e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419000 AT5G50250.1 57.947 302 98 8 1 286 1 289 1.42e-106 311
Msa0419000 AT4G24770.1 61.905 273 75 6 41 287 59 328 5.62e-106 311
Msa0419000 AT4G24770.2 61.905 273 75 6 41 287 59 328 5.62e-106 311
Msa0419000 AT2G37220.1 53.081 211 77 2 101 289 79 289 6.73e-66 208
Msa0419000 AT1G60000.1 36.786 280 142 6 15 283 1 256 2.63e-47 159
Msa0419000 AT3G52380.1 35.816 282 157 9 20 285 27 300 7.27e-45 155
Msa0419000 AT3G52150.2 35.135 259 143 6 30 280 12 253 3.37e-36 130
Msa0419000 AT3G52150.2 39.785 93 52 1 193 281 61 153 1.45e-17 80.5
Msa0419000 AT3G52150.1 35.135 259 143 6 30 280 12 253 3.37e-36 130
Msa0419000 AT3G52150.1 39.785 93 52 1 193 281 61 153 1.45e-17 80.5
Msa0419000 AT2G35410.1 33.205 259 147 9 30 275 21 266 1.91e-29 114
Msa0419000 AT3G53460.1 61.176 85 33 0 205 289 258 342 1.67e-28 112
Msa0419000 AT3G53460.1 56.075 107 47 0 92 198 84 190 1.35e-26 107
Msa0419000 AT3G53460.1 45.455 88 48 0 199 286 94 181 3.43e-17 80.9
Msa0419000 AT3G53460.1 43.678 87 46 1 108 194 258 341 1.05e-15 76.6
Msa0419000 AT3G53460.3 61.176 85 33 0 205 289 258 342 1.67e-28 112
Msa0419000 AT3G53460.3 56.075 107 47 0 92 198 84 190 1.35e-26 107
Msa0419000 AT3G53460.3 45.455 88 48 0 199 286 94 181 3.43e-17 80.9
Msa0419000 AT3G53460.3 43.678 87 46 1 108 194 258 341 1.05e-15 76.6
Msa0419000 AT3G53460.2 61.176 85 33 0 205 289 258 342 1.67e-28 112
Msa0419000 AT3G53460.2 56.075 107 47 0 92 198 84 190 1.35e-26 107
Msa0419000 AT3G53460.2 45.455 88 48 0 199 286 94 181 3.43e-17 80.9
Msa0419000 AT3G53460.2 43.678 87 46 1 108 194 258 341 1.05e-15 76.6
Msa0419000 AT3G53460.4 61.176 85 33 0 205 289 279 363 2.57e-28 112
Msa0419000 AT3G53460.4 46.875 128 47 1 92 198 84 211 4.42e-22 95.1
Msa0419000 AT3G53460.4 43.678 87 46 1 108 194 279 362 1.11e-15 76.6
Msa0419000 AT3G53460.4 36.697 109 48 1 199 286 94 202 1.70e-13 70.5
Msa0419000 AT1G01080.1 35.450 189 114 4 96 277 97 284 5.50e-28 109
Msa0419000 AT1G01080.2 35.263 190 114 5 96 277 97 285 4.08e-27 107
Msa0419000 AT1G01080.3 34.637 179 109 4 96 267 97 274 1.80e-25 102
Msa0419000 AT3G16380.1 31.544 298 156 12 25 286 103 388 6.75e-23 98.6
Msa0419000 AT3G16380.1 26.042 192 128 3 87 278 7 184 3.34e-11 63.9
Msa0419000 AT3G23830.2 51.899 79 38 0 205 283 36 114 1.95e-22 90.9
Msa0419000 AT3G23830.2 41.667 84 49 0 107 190 35 118 4.47e-14 68.6
Msa0419000 AT3G23830.1 51.899 79 38 0 205 283 36 114 1.95e-22 90.9
Msa0419000 AT3G23830.1 41.667 84 49 0 107 190 35 118 4.47e-14 68.6
Msa0419000 AT2G21660.2 50.649 77 38 0 205 281 9 85 2.08e-22 91.7
Msa0419000 AT2G21660.2 43.590 78 44 0 106 183 7 84 2.22e-13 67.0
Msa0419000 AT4G13850.4 50.000 80 40 0 205 284 36 115 3.00e-22 90.1
Msa0419000 AT4G13850.4 39.759 83 47 1 108 190 36 115 8.24e-11 59.3
Msa0419000 AT2G21660.1 50.649 77 38 0 205 281 9 85 3.18e-22 91.7
Msa0419000 AT2G21660.1 43.590 78 44 0 106 183 7 84 3.11e-13 67.0
Msa0419000 AT4G13850.3 50.000 80 40 0 205 284 36 115 4.28e-22 90.1
Msa0419000 AT4G13850.3 39.286 84 51 0 108 191 36 119 2.20e-11 61.2
Msa0419000 AT4G13850.2 50.000 80 40 0 205 284 36 115 5.40e-22 90.1
Msa0419000 AT4G13850.2 39.286 84 51 0 108 191 36 119 2.64e-11 61.2
Msa0419000 AT4G13850.1 50.000 80 40 0 205 284 36 115 6.13e-22 90.1
Msa0419000 AT4G13850.1 39.286 84 51 0 108 191 36 119 2.91e-11 61.2
Msa0419000 AT4G39260.3 45.238 84 46 0 205 288 7 90 5.93e-21 85.5
Msa0419000 AT4G39260.3 39.759 83 50 0 106 188 5 87 9.32e-14 66.2
Msa0419000 AT2G18510.1 31.472 197 119 3 92 287 15 196 4.29e-20 89.4
Msa0419000 AT4G39260.2 46.753 77 41 0 205 281 7 83 5.81e-20 84.0
Msa0419000 AT4G39260.2 39.241 79 48 0 106 184 5 83 9.99e-12 61.6
Msa0419000 AT4G39260.1 46.753 77 41 0 205 281 7 83 1.70e-19 84.0
Msa0419000 AT4G39260.1 39.241 79 48 0 106 184 5 83 2.41e-11 61.6
Msa0419000 AT5G19350.2 30.556 180 119 2 109 287 26 200 2.39e-19 87.8
Msa0419000 AT5G19350.1 30.556 180 119 2 109 287 26 200 2.49e-19 87.8
Msa0419000 AT1G22760.1 31.088 193 118 4 104 286 226 413 2.66e-19 88.2
Msa0419000 AT5G61030.2 45.570 79 43 0 205 283 41 119 4.12e-19 85.9
Msa0419000 AT5G61030.2 42.500 80 46 0 107 186 40 119 7.00e-13 68.2
Msa0419000 AT5G61030.1 45.570 79 43 0 205 283 41 119 4.12e-19 85.9
Msa0419000 AT5G61030.1 42.500 80 46 0 107 186 40 119 7.00e-13 68.2
Msa0419000 AT5G54900.1 32.402 179 111 4 109 283 62 234 9.92e-19 85.9
Msa0419000 AT5G54900.1 26.230 183 112 5 109 278 156 328 6.28e-11 62.8
Msa0419000 AT4G09040.1 29.885 174 119 3 106 278 93 264 1.08e-18 84.7
Msa0419000 AT4G09040.2 29.885 174 119 3 106 278 33 204 1.11e-18 83.6
Msa0419000 AT1G34140.1 33.152 184 111 4 109 283 121 301 1.70e-18 85.1
Msa0419000 AT1G17640.2 29.444 180 119 3 107 286 66 237 2.39e-18 84.3
Msa0419000 AT1G17640.1 29.444 180 119 3 107 286 66 237 2.39e-18 84.3
Msa0419000 AT1G17640.3 29.444 180 119 3 107 286 66 237 2.39e-18 84.3
Msa0419000 AT3G19130.1 33.155 187 103 6 109 286 110 283 2.65e-18 84.7
Msa0419000 AT3G14100.1 31.844 179 110 3 102 280 54 220 5.38e-18 84.0
Msa0419000 AT3G08000.1 43.373 83 47 0 205 287 42 124 5.66e-18 79.3
Msa0419000 AT2G36660.1 28.788 198 131 4 97 286 190 385 7.11e-18 84.0
Msa0419000 AT2G36660.1 27.222 180 118 4 109 286 114 282 7.88e-12 65.9
Msa0419000 AT1G71770.1 31.414 191 120 5 104 286 236 423 8.95e-18 84.0
Msa0419000 AT1G71770.1 28.729 181 124 3 106 286 145 320 2.10e-14 73.6
Msa0419000 AT1G71770.2 31.414 191 120 5 104 286 236 423 8.95e-18 84.0
Msa0419000 AT1G71770.2 28.729 181 124 3 106 286 145 320 2.10e-14 73.6
Msa0419000 AT1G49600.3 32.044 181 113 4 109 286 121 294 1.28e-17 82.8
Msa0419000 AT1G49600.2 32.044 181 113 4 109 286 121 294 1.28e-17 82.8
Msa0419000 AT5G40490.1 27.429 175 118 2 107 281 42 207 2.23e-17 82.0
Msa0419000 AT3G26420.1 43.210 81 46 0 201 281 4 84 2.65e-17 79.7
Msa0419000 AT1G49600.1 32.044 181 113 4 109 286 121 294 3.34e-17 81.6
Msa0419000 AT1G11650.1 30.168 179 114 3 109 283 64 235 4.17e-17 80.1
Msa0419000 AT5G55550.2 29.508 183 117 4 107 280 6 185 4.72e-17 81.3
Msa0419000 AT5G55550.3 29.508 183 117 4 107 280 6 185 4.72e-17 81.3
Msa0419000 AT5G55550.6 29.508 183 117 4 107 280 6 185 4.72e-17 81.3
Msa0419000 AT5G55550.11 29.508 183 117 4 107 280 6 185 4.72e-17 81.3
Msa0419000 AT2G23350.1 30.814 172 109 2 107 278 46 207 5.82e-17 81.3
Msa0419000 AT2G23350.1 29.630 189 116 5 109 286 227 409 7.34e-15 75.1
Msa0419000 AT2G23350.1 29.444 180 120 4 107 286 134 306 5.79e-14 72.4
Msa0419000 AT3G13224.1 26.752 157 108 2 107 263 19 168 6.53e-17 78.6
Msa0419000 AT4G26650.1 29.032 186 117 4 107 280 15 197 6.78e-17 80.9
Msa0419000 AT4G36960.1 31.351 185 112 4 106 286 2 175 6.79e-17 80.5
Msa0419000 AT4G36960.2 31.351 185 112 4 106 286 2 175 6.79e-17 80.5
Msa0419000 AT5G55550.5 29.508 183 117 4 107 280 6 185 6.90e-17 80.9
Msa0419000 AT5G55550.4 29.508 183 117 4 107 280 6 185 6.90e-17 80.9
Msa0419000 AT5G55550.9 29.508 183 117 4 107 280 6 185 6.90e-17 80.9
Msa0419000 AT5G55550.7 29.508 183 117 4 107 280 6 185 6.90e-17 80.9
Msa0419000 AT5G55550.1 29.508 183 117 4 107 280 6 185 6.90e-17 80.9
Msa0419000 AT4G26650.2 29.032 186 117 4 107 280 12 194 7.05e-17 80.9
Msa0419000 AT4G34110.1 30.857 175 99 4 109 277 38 196 7.39e-17 80.9
Msa0419000 AT4G34110.1 27.957 186 123 4 109 286 217 399 2.38e-15 76.6
Msa0419000 AT1G17370.2 30.168 179 113 2 102 280 49 215 1.12e-16 80.1
Msa0419000 AT1G17370.2 27.979 193 113 3 108 278 140 328 3.75e-12 66.6
Msa0419000 AT1G47500.2 30.412 194 113 4 105 287 101 283 1.13e-16 79.3
Msa0419000 AT3G07810.1 32.278 158 98 2 105 255 4 159 1.25e-16 80.1
Msa0419000 AT1G17370.1 30.168 179 113 2 102 280 49 215 1.31e-16 79.7
Msa0419000 AT1G17370.1 27.551 196 113 3 108 278 140 331 1.08e-11 65.1
Msa0419000 AT1G11650.2 30.168 179 114 3 109 283 64 235 1.33e-16 79.7
Msa0419000 AT1G11650.2 28.415 183 108 5 109 278 157 329 1.02e-11 65.1
Msa0419000 AT3G07810.2 32.278 158 98 2 105 255 4 159 1.35e-16 80.1
Msa0419000 AT1G74230.1 48.684 76 38 1 205 280 35 109 1.96e-16 78.2
Msa0419000 AT1G47500.1 30.412 194 113 4 105 287 101 283 3.82e-16 78.6
Msa0419000 AT1G47500.1 28.272 191 117 5 109 285 201 385 7.56e-12 65.9
Msa0419000 AT3G13224.3 25.140 179 125 3 108 286 11 180 3.84e-16 77.8
Msa0419000 AT1G54080.1 29.609 179 114 3 102 280 58 224 6.07e-16 77.8
Msa0419000 AT1G54080.1 28.061 196 112 4 108 278 149 340 1.06e-11 65.1
Msa0419000 AT4G27000.1 29.775 178 116 4 109 283 82 253 6.54e-16 77.8
Msa0419000 AT1G47490.2 30.102 196 111 5 105 287 99 281 9.54e-16 76.3
Msa0419000 AT3G13224.2 25.000 180 126 3 107 286 19 189 1.01e-15 77.0
Msa0419000 AT4G14300.1 28.649 185 120 3 105 280 4 185 2.91e-15 75.9
Msa0419000 AT4G14300.2 28.649 185 120 3 105 280 4 185 2.91e-15 75.9
Msa0419000 AT3G15010.1 32.353 170 106 5 106 271 74 238 3.40e-15 75.5
Msa0419000 AT3G15010.2 32.353 170 106 5 106 271 74 238 3.40e-15 75.5
Msa0419000 AT1G47490.1 30.102 196 111 5 105 287 99 281 3.49e-15 75.5
Msa0419000 AT1G47490.1 28.272 191 117 4 109 285 199 383 6.87e-13 68.9
Msa0419000 AT4G39260.4 46.774 62 33 0 205 266 7 68 3.88e-15 70.5
Msa0419000 AT4G13860.1 50.667 75 35 1 205 279 4 76 4.49e-15 69.7
Msa0419000 AT5G40490.2 27.097 155 104 2 127 281 45 190 8.44e-15 74.3
Msa0419000 AT5G47620.1 28.804 184 117 4 105 280 4 181 9.92e-15 74.3
Msa0419000 AT5G47620.2 28.804 184 117 4 105 280 4 181 9.92e-15 74.3
Msa0419000 AT5G47620.5 28.804 184 117 4 105 280 4 181 9.92e-15 74.3
Msa0419000 AT5G41690.1 29.703 202 115 5 106 284 67 264 1.02e-14 74.7
Msa0419000 AT5G41690.3 29.703 202 115 5 106 284 67 264 1.02e-14 74.7
Msa0419000 AT5G41690.2 29.703 202 115 5 106 284 67 264 1.02e-14 74.7
Msa0419000 AT5G06210.1 39.024 82 50 0 107 188 34 115 1.46e-14 70.1
Msa0419000 AT5G06210.1 38.554 83 51 0 205 287 35 117 1.80e-13 67.0
Msa0419000 AT1G54080.2 29.508 183 113 4 102 280 58 228 1.51e-14 73.9
Msa0419000 AT1G60650.2 41.558 77 45 0 205 281 13 89 3.07e-14 72.0
Msa0419000 AT1G60650.2 33.333 81 54 0 106 186 11 91 2.45e-11 63.5
Msa0419000 AT1G60650.1 41.558 77 45 0 205 281 13 89 3.07e-14 72.0
Msa0419000 AT1G60650.1 33.333 81 54 0 106 186 11 91 2.45e-11 63.5
Msa0419000 AT5G47320.1 43.750 80 45 0 205 284 32 111 3.19e-14 70.5
Msa0419000 AT1G49760.1 30.000 170 107 3 109 277 47 205 3.31e-14 73.2
Msa0419000 AT1G49760.1 30.366 191 115 5 109 286 226 411 1.40e-13 71.2
Msa0419000 AT1G49760.2 30.000 170 107 3 109 277 47 205 3.31e-14 73.2
Msa0419000 AT1G49760.2 30.366 191 115 5 109 286 226 411 1.40e-13 71.2
Msa0419000 AT2G33410.1 29.947 187 115 5 105 280 4 185 2.63e-13 70.1
Msa0419000 AT5G04280.1 41.558 77 45 0 205 281 8 84 1.41e-12 67.4
Msa0419000 AT1G18630.1 44.156 77 43 0 205 281 37 113 1.60e-12 64.7
Msa0419000 AT2G21690.1 37.349 83 49 1 207 286 10 92 2.37e-12 63.2
Msa0419000 AT5G51300.1 33.333 135 79 3 57 180 419 553 2.67e-12 67.4
Msa0419000 AT5G51300.1 41.333 75 44 0 206 280 482 556 3.89e-12 67.0
Msa0419000 AT5G51300.2 33.333 135 79 3 57 180 419 553 2.67e-12 67.4
Msa0419000 AT5G51300.2 41.333 75 44 0 206 280 482 556 3.89e-12 67.0
Msa0419000 AT5G51300.3 33.333 135 79 3 57 180 419 553 2.67e-12 67.4
Msa0419000 AT5G51300.3 41.333 75 44 0 206 280 482 556 3.89e-12 67.0
Msa0419000 AT5G09880.1 27.461 193 131 5 94 282 157 344 5.89e-12 66.2
Msa0419000 AT3G55340.1 27.778 198 129 8 94 284 151 341 6.04e-12 66.2
Msa0419000 AT3G18610.2 31.319 182 112 6 109 285 326 499 8.50e-12 65.9
Msa0419000 AT3G18610.3 31.319 182 112 6 109 285 356 529 9.81e-12 65.5
Msa0419000 AT3G18610.1 31.319 182 112 6 109 285 386 559 1.09e-11 65.5
Msa0419000 AT3G46020.1 37.179 78 49 0 205 282 8 85 1.10e-11 60.8
Msa0419000 AT5G59865.1 35.366 82 51 1 205 286 27 106 1.10e-11 61.2
Msa0419000 AT1G71800.1 38.961 77 47 0 206 282 11 87 1.73e-11 64.7
Msa0419000 AT5G11412.1 52.000 50 24 0 205 254 53 102 2.25e-11 62.0
Msa0419000 AT5G19960.1 39.726 73 43 1 206 278 9 80 3.21e-11 63.5
Msa0419000 AT4G13860.2 48.333 60 31 0 220 279 2 61 3.55e-11 58.5
Msa0419000 AT4G00830.4 28.415 183 120 6 108 286 197 372 3.88e-11 63.5
Msa0419000 AT4G00830.2 28.415 183 120 6 108 286 197 372 4.45e-11 63.5
Msa0419000 AT4G00830.1 28.415 183 120 6 108 286 197 372 4.45e-11 63.5
Msa0419000 AT4G00830.6 28.415 183 120 6 108 286 197 372 4.45e-11 63.5
Msa0419000 AT3G56860.9 25.962 208 117 6 102 287 135 327 6.17e-11 63.2
Msa0419000 AT3G56860.11 25.962 208 117 6 102 287 135 327 6.17e-11 63.2
Msa0419000 AT3G56860.8 25.962 208 117 6 102 287 135 327 6.17e-11 63.2
Msa0419000 AT3G56860.5 25.962 208 117 6 102 287 135 327 6.17e-11 63.2
Msa0419000 AT3G56860.7 25.962 208 117 6 102 287 135 327 6.17e-11 63.2
Msa0419000 AT3G56860.2 25.962 208 117 6 102 287 135 327 6.17e-11 63.2
Msa0419000 AT3G56860.6 25.962 208 117 6 102 287 135 327 6.17e-11 63.2
Msa0419000 AT3G56860.10 25.962 208 117 6 102 287 135 327 6.17e-11 63.2
Msa0419000 AT3G56860.3 25.962 208 117 6 102 287 135 327 6.17e-11 63.2
Msa0419000 AT3G56860.1 25.962 208 117 6 102 287 135 327 6.17e-11 63.2
Msa0419000 AT3G56860.4 25.962 208 117 6 102 287 135 327 6.17e-11 63.2
Msa0419000 AT4G36690.3 25.888 197 121 4 108 280 240 435 7.68e-11 62.8
Msa0419000 AT4G36690.2 25.888 197 121 4 108 280 240 435 9.46e-11 62.8

Find 107 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGGACCGGAGTCGTGGTTT+TGG 0.257885 3_2:-66910532 Msa0419000:CDS
GAAGAAGGTGGGTTTGGATT+TGG 0.265654 3_2:+66910975 None:intergenic
TTACATAGGCGTTAAACTTC+TGG 0.269681 3_2:+66910467 None:intergenic
ACAAATAAATAACAGTAAAA+TGG 0.277176 3_2:+66908876 None:intergenic
TACTCAAAAGGAGCCGCGTC+TGG 0.295336 3_2:+66909013 None:intergenic
TGATGTTGATAGTGAGAAAT+TGG 0.320740 3_2:-66910707 Msa0419000:CDS
CTCAGCAATCTCAACGGTTC+CGG 0.324374 3_2:+66910666 None:intergenic
AAGGGAGAAGAAGGTGGGTT+TGG 0.325353 3_2:+66910969 None:intergenic
ACTGGTCGATCACGTGGATT+TGG 0.332826 3_2:-66909333 Msa0419000:CDS
GAGATGGAGATTGAGGGGTT+TGG 0.346796 3_2:+66910942 None:intergenic
GATTGAGGGGTTTGGAGGGA+AGG 0.360326 3_2:+66910950 None:intergenic
GGCAGGAATCGGCCATGGTT+AGG 0.362198 3_2:+66911019 None:intergenic
TAATACTCAAGAAAATTTAA+TGG 0.382724 3_2:+66908726 None:intergenic
AGTTTCAGCGGCGTCGGCAG+TGG 0.389734 3_2:+66910813 None:intergenic
ATGGAGATTGAGGGGTTTGG+AGG 0.396602 3_2:+66910945 None:intergenic
GAGGAAGCAAAATTATTTGT+TGG 0.402885 3_2:-66910742 Msa0419000:CDS
GATGCCATTGCCGCTCTTGA+TGG 0.408798 3_2:-66909276 Msa0419000:CDS
TGATGGAGAGATGGAGATTG+AGG 0.421108 3_2:+66910935 None:intergenic
GCAGGAATCGGCCATGGTTA+GGG 0.422585 3_2:+66911020 None:intergenic
GGAGTAGCCGGTTTCATGCT+AGG 0.428274 3_2:-66908904 Msa0419000:three_prime_UTR
ATAACTCTAGCAGTTGATAT+AGG 0.441480 3_2:+66908974 None:intergenic
TTTGGAGGGAAGGGAGAAGA+AGG 0.441974 3_2:+66910960 None:intergenic
TGGTGATAGAAGGGTTTAGA+AGG 0.443131 3_2:+66911100 None:intergenic
GAGGGAAGGGAGAAGAAGGT+GGG 0.447073 3_2:+66910964 None:intergenic
ATTGAGGGGTTTGGAGGGAA+GGG 0.448793 3_2:+66910951 None:intergenic
GGAGGGAAGGGAGAAGAAGG+TGG 0.449920 3_2:+66910963 None:intergenic
CGCTCGGGTCGAGATCCTTT+AGG 0.452976 3_2:+66909501 None:intergenic
GAAGAGGGATGAGAGGAGGC+AGG 0.455657 3_2:+66911002 None:intergenic
GCCGCGTCTGGGCCTGTCTT+CGG 0.457397 3_2:+66909025 None:intergenic
TGGAGATTGAGGGGTTTGGA+GGG 0.458466 3_2:+66910946 None:intergenic
CATTGCCGCTCTTGATGGTC+AGG 0.460084 3_2:-66909271 Msa0419000:intron
GGATTTGAAGAGGGGAGTGG+TGG 0.461394 3_2:+66911041 None:intergenic
GATAGACATGGTGGTGGTGG+TGG 0.462517 3_2:+66911068 None:intergenic
TGGTGGTGGTGGTGATAGAA+GGG 0.463434 3_2:+66911091 None:intergenic
ATCATTCATTTCAGTTTCAT+CGG 0.463677 3_2:+66909296 None:intergenic
TTTGGATTTGGAGTGGAAGA+GGG 0.465991 3_2:+66910987 None:intergenic
TTCTCACTATCAACATCAAA+AGG 0.466331 3_2:+66910712 None:intergenic
GTTTCAGCGGCGTCGGCAGT+GGG 0.467592 3_2:+66910814 None:intergenic
GTTTGGATTTGGAGTGGAAG+AGG 0.471089 3_2:+66910986 None:intergenic
GGATAAACCTAGCATGAAAC+CGG 0.474197 3_2:+66908897 None:intergenic
GAGTGAGCGTTGCCGAAGAC+AGG 0.476254 3_2:-66909037 Msa0419000:CDS
GGATGAGAGGAGGCAGGAAT+CGG 0.476652 3_2:+66911008 None:intergenic
AGCTGGATTGAGTCTCGATT+GGG 0.477060 3_2:-66910839 Msa0419000:CDS
GAAGGGTTTAGAAGGAATGA+AGG 0.478258 3_2:+66911108 None:intergenic
GATGGAGAGATGGAGATTGA+GGG 0.487203 3_2:+66910936 None:intergenic
AGTGATAGACATGGTGGTGG+TGG 0.488880 3_2:+66911065 None:intergenic
AGGTGCACGCTCAGTACGCT+CGG 0.489901 3_2:+66909485 None:intergenic
TGGAGTGGAAGAGGGATGAG+AGG 0.490997 3_2:+66910995 None:intergenic
GTTAACAAGGCTTCTCCTAA+AGG 0.492516 3_2:-66909516 Msa0419000:CDS
TTTATGTTGGTAACTTGCCA+TGG 0.495693 3_2:-66909437 Msa0419000:CDS
TAGGGATTTGAAGAGGGGAG+TGG 0.499159 3_2:+66911038 None:intergenic
AAGCTGGATTGAGTCTCGAT+TGG 0.501735 3_2:-66910840 Msa0419000:CDS
CATTGCAGAGTTTGGAGGGT+AGG 0.503587 3_2:-66909067 Msa0419000:intron
AGAAGGAATGAAGGTAGAGA+AGG 0.506906 3_2:+66911117 None:intergenic
CCCTTGTTCGTTGCTCAAGA+AGG 0.508002 3_2:-66910892 Msa0419000:CDS
CATGGGAAGTTGATAATAGT+AGG 0.509813 3_2:-66909419 Msa0419000:CDS
CCAACATAAATTCTTATGAC+AGG 0.511751 3_2:+66909450 None:intergenic
CTTTCATTGCAGAGTTTGGA+GGG 0.518996 3_2:-66909071 Msa0419000:intron
CATGGTTAGGGATTTGAAGA+GGG 0.528817 3_2:+66911032 None:intergenic
ACTCAAAAGGAGCCGCGTCT+GGG 0.529406 3_2:+66909014 None:intergenic
CTGACCATCAAGAGCGGCAA+TGG 0.534062 3_2:+66909272 None:intergenic
GGTTTCAGTTTCAGCGGCGT+CGG 0.536606 3_2:+66910807 None:intergenic
GCTTTCATTGCAGAGTTTGG+AGG 0.537218 3_2:-66909072 Msa0419000:intron
GGTTATTTATAACAGAGAAA+CGG 0.537755 3_2:-66910551 Msa0419000:CDS
CAAGGGAGAGAAAGAGCGGT+TGG 0.540997 3_2:+66910909 None:intergenic
AAGATCGTTGGCTGTTAACA+AGG 0.543599 3_2:-66909529 Msa0419000:CDS
AGGTGGGTTTGGATTTGGAG+TGG 0.548878 3_2:+66910980 None:intergenic
GTAGTCTATGATAGAGAGAC+TGG 0.551457 3_2:-66909351 Msa0419000:CDS
AAACTTCTGGACAGCAGACT+CGG 0.551715 3_2:+66910480 None:intergenic
ATGGAGAGATGGAGATTGAG+GGG 0.552843 3_2:+66910937 None:intergenic
GCAGAGGTGGAGAGTAGGCA+TGG 0.553538 3_2:-66908784 Msa0419000:three_prime_UTR
AGCAGACTCGGCTTCTTCAA+CGG 0.555548 3_2:+66910492 None:intergenic
GCCGCTGAAACTGAAACCGC+TGG 0.556988 3_2:-66910802 Msa0419000:CDS
AGACTGCAGAGGTGGAGAGT+AGG 0.558940 3_2:-66908789 Msa0419000:three_prime_UTR
GGACTACGATGGAAGATCGT+TGG 0.560144 3_2:-66909541 Msa0419000:CDS
GCCTTCTTGAGCAACGAACA+AGG 0.561779 3_2:+66910891 None:intergenic
TACTTGACGAGCTACTCAAA+AGG 0.564061 3_2:+66909001 None:intergenic
ACTTCTCTAGACGAAGAAGC+TGG 0.568501 3_2:-66910856 Msa0419000:CDS
AGCTTCTTCGTCTAGAGAAG+TGG 0.569747 3_2:+66910858 None:intergenic
TTATGTTGGTAACTTGCCAT+GGG 0.577556 3_2:-66909436 Msa0419000:CDS
AGAGAAACGGACCGGAGTCG+TGG 0.578383 3_2:-66910538 Msa0419000:CDS
AGTGGAAGAGGGATGAGAGG+AGG 0.581707 3_2:+66910998 None:intergenic
CCATGGTTAGGGATTTGAAG+AGG 0.582325 3_2:+66911031 None:intergenic
TGCTAGAAGTCTATAAAACT+CGG 0.590668 3_2:-66908750 Msa0419000:three_prime_UTR
GGAAGTGATAGACATGGTGG+TGG 0.592643 3_2:+66911062 None:intergenic
AGAGAGACTGGTCGATCACG+TGG 0.593334 3_2:-66909339 Msa0419000:CDS
CTACTATTATCAACTTCCCA+TGG 0.597561 3_2:+66909420 None:intergenic
GAGGAGGCAGGAATCGGCCA+TGG 0.598795 3_2:+66911014 None:intergenic
TTTATAACAGAGAAACGGAC+CGG 0.600332 3_2:-66910546 Msa0419000:CDS
CCTGTCATAAGAATTTATGT+TGG 0.603593 3_2:-66909450 Msa0419000:CDS
GGTGCACGCTCAGTACGCTC+GGG 0.609107 3_2:+66909486 None:intergenic
GCCGAAGACAGGCCCAGACG+CGG 0.612716 3_2:-66909026 Msa0419000:CDS
ACCAGCGGTTTCAGTTTCAG+CGG 0.623350 3_2:+66910801 None:intergenic
CAAATCCAAAACCACGACTC+CGG 0.626160 3_2:+66910527 None:intergenic
CAGAGGTGGAGAGTAGGCAT+GGG 0.630670 3_2:-66908783 Msa0419000:three_prime_UTR
TTCAGCAGAATCATCACCAG+CGG 0.638086 3_2:+66910786 None:intergenic
ATGGTTAGGGATTTGAAGAG+GGG 0.642863 3_2:+66911033 None:intergenic
CCTTCTTGAGCAACGAACAA+GGG 0.648260 3_2:+66910892 None:intergenic
TGTTACCTCAGCAATCTCAA+CGG 0.671010 3_2:+66910660 None:intergenic
CCTCTTCAAATCCCTAACCA+TGG 0.678784 3_2:-66911031 Msa0419000:CDS
TTCATGTGACAGGACTACGA+TGG 0.686918 3_2:-66909552 Msa0419000:intron
GGTGGAAGTGATAGACATGG+TGG 0.687740 3_2:+66911059 None:intergenic
CGAACAAGGGAGAGAAAGAG+CGG 0.688910 3_2:+66910905 None:intergenic
CGGAACCGTTGAGATTGCTG+AGG 0.697900 3_2:-66910665 Msa0419000:intron
AGTGGTGGAAGTGATAGACA+TGG 0.705544 3_2:+66911056 None:intergenic
TTATACCTGACCATCAAGAG+CGG 0.726743 3_2:+66909266 None:intergenic
ATGACAGGTTCAAAACTGCG+AGG 0.748725 3_2:+66909465 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTTGAGAAAATTGAA+TGG - chr3_2:66909702-66909721 Msa0419000:intron 15.0%
!! AATATTACAATTTAGTCATA+CGG + chr3_2:66910054-66910073 None:intergenic 15.0%
!!! TGTTAGATTTCTTATTTATA+TGG - chr3_2:66910115-66910134 Msa0419000:intron 15.0%
!! ACAAATAAATAACAGTAAAA+TGG + chr3_2:66910991-66911010 None:intergenic 15.0%
!! AATAATTTGAGAAAATTGAA+TGG - chr3_2:66909702-66909721 Msa0419000:intron 15.0%
!! AATATTACAATTTAGTCATA+CGG + chr3_2:66910054-66910073 None:intergenic 15.0%
!!! TGTTAGATTTCTTATTTATA+TGG - chr3_2:66910115-66910134 Msa0419000:intron 15.0%
!! ACAAATAAATAACAGTAAAA+TGG + chr3_2:66910991-66911010 None:intergenic 15.0%
!!! TGCTATTTGAGTTTATTTTT+TGG - chr3_2:66909249-66909268 Msa0419000:intron 20.0%
!!! ATTGTTGTTATTGTTGTTTT+AGG - chr3_2:66909292-66909311 Msa0419000:CDS 20.0%
!! AATTTCATTTGAACTTACAT+AGG + chr3_2:66909414-66909433 None:intergenic 20.0%
!! TAACACATTCTAAATTATAG+TGG - chr3_2:66909451-66909470 Msa0419000:CDS 20.0%
!! CATAATCAATGTAAACTATA+AGG - chr3_2:66909517-66909536 Msa0419000:CDS 20.0%
!!! AAAAAAATGGCATTGTTTTA+AGG + chr3_2:66910093-66910112 None:intergenic 20.0%
!! GAAATCTAACAAGAAAAAAA+TGG + chr3_2:66910106-66910125 None:intergenic 20.0%
!!! TTTTTTTTGTTGTGTTTTCT+TGG - chr3_2:66910277-66910296 Msa0419000:intron 20.0%
!!! TATTTGTGTTTTAATAGTTG+AGG - chr3_2:66910910-66910929 Msa0419000:CDS 20.0%
!!! ACTCTTATATAATTTTCTTC+TGG - chr3_2:66910939-66910958 Msa0419000:CDS 20.0%
!!! TGCTATTTGAGTTTATTTTT+TGG - chr3_2:66909249-66909268 Msa0419000:intron 20.0%
!!! ATTGTTGTTATTGTTGTTTT+AGG - chr3_2:66909292-66909311 Msa0419000:CDS 20.0%
!! AATTTCATTTGAACTTACAT+AGG + chr3_2:66909414-66909433 None:intergenic 20.0%
!! TAACACATTCTAAATTATAG+TGG - chr3_2:66909451-66909470 Msa0419000:CDS 20.0%
!! CATAATCAATGTAAACTATA+AGG - chr3_2:66909517-66909536 Msa0419000:CDS 20.0%
!!! AAAAAAATGGCATTGTTTTA+AGG + chr3_2:66910093-66910112 None:intergenic 20.0%
!! GAAATCTAACAAGAAAAAAA+TGG + chr3_2:66910106-66910125 None:intergenic 20.0%
!!! TTTTTTTTGTTGTGTTTTCT+TGG - chr3_2:66910277-66910296 Msa0419000:intron 20.0%
!!! TATTTGTGTTTTAATAGTTG+AGG - chr3_2:66910910-66910929 Msa0419000:CDS 20.0%
!!! ACTCTTATATAATTTTCTTC+TGG - chr3_2:66910939-66910958 Msa0419000:CDS 20.0%
! GGTTATTTATAACAGAGAAA+CGG - chr3_2:66909313-66909332 Msa0419000:CDS 25.0%
! TATTAGTAGTTTCAATGTGT+CGG + chr3_2:66909686-66909705 None:intergenic 25.0%
! CTTTACTCTTGAATGAAATA+TGG - chr3_2:66909784-66909803 Msa0419000:intron 25.0%
!!! ATTCATTTTTCTTGCTTTCT+TGG - chr3_2:66909850-66909869 Msa0419000:intron 25.0%
!! CCTCATATAATTTTCCAAAT+CGG + chr3_2:66909957-66909976 None:intergenic 25.0%
! ATTTGGAAAATTATATGAGG+TGG - chr3_2:66909957-66909976 Msa0419000:intron 25.0%
! AAAATTATATGAGGTGGTTT+AGG - chr3_2:66909963-66909982 Msa0419000:intron 25.0%
! ATCATTCATTTCAGTTTCAT+CGG + chr3_2:66910571-66910590 None:intergenic 25.0%
!! TGAAGGGAATATGATTTTTA+TGG - chr3_2:66910683-66910702 Msa0419000:CDS 25.0%
!! GAAGGGAATATGATTTTTAT+GGG - chr3_2:66910684-66910703 Msa0419000:CDS 25.0%
! GGTTATTTATAACAGAGAAA+CGG - chr3_2:66909313-66909332 Msa0419000:CDS 25.0%
! TATTAGTAGTTTCAATGTGT+CGG + chr3_2:66909686-66909705 None:intergenic 25.0%
! CTTTACTCTTGAATGAAATA+TGG - chr3_2:66909784-66909803 Msa0419000:intron 25.0%
!!! ATTCATTTTTCTTGCTTTCT+TGG - chr3_2:66909850-66909869 Msa0419000:intron 25.0%
!! CCTCATATAATTTTCCAAAT+CGG + chr3_2:66909957-66909976 None:intergenic 25.0%
! ATTTGGAAAATTATATGAGG+TGG - chr3_2:66909957-66909976 Msa0419000:intron 25.0%
! AAAATTATATGAGGTGGTTT+AGG - chr3_2:66909963-66909982 Msa0419000:intron 25.0%
! ATCATTCATTTCAGTTTCAT+CGG + chr3_2:66910571-66910590 None:intergenic 25.0%
!! TGAAGGGAATATGATTTTTA+TGG - chr3_2:66910683-66910702 Msa0419000:CDS 25.0%
!! GAAGGGAATATGATTTTTAT+GGG - chr3_2:66910684-66910703 Msa0419000:CDS 25.0%
! ACAAATAATTTTGCTTCCTC+AGG + chr3_2:66909122-66909141 None:intergenic 30.0%
GAGGAAGCAAAATTATTTGT+TGG - chr3_2:66909122-66909141 Msa0419000:intron 30.0%
TTCTCACTATCAACATCAAA+AGG + chr3_2:66909155-66909174 None:intergenic 30.0%
!! TGATGTTGATAGTGAGAAAT+TGG - chr3_2:66909157-66909176 Msa0419000:intron 30.0%
AATGTCGATATTTCAAGCTA+TGG - chr3_2:66909475-66909494 Msa0419000:CDS 30.0%
! GTGACAACCATTTTGAATTT+TGG - chr3_2:66909734-66909753 Msa0419000:intron 30.0%
AAAGAACTCAAGATAGGATT+AGG + chr3_2:66909768-66909787 None:intergenic 30.0%
AAGAGTAAAGAACTCAAGAT+AGG + chr3_2:66909774-66909793 None:intergenic 30.0%
TTTCCATCTTGAACAAATAG+AGG - chr3_2:66909810-66909829 Msa0419000:intron 30.0%
TTTCCTCTATTTGTTCAAGA+TGG + chr3_2:66909816-66909835 None:intergenic 30.0%
!! AGACACATAAGAAGTATTAC+AGG + chr3_2:66909877-66909896 None:intergenic 30.0%
! TATATAGTATGCGTTCTAAG+GGG + chr3_2:66909924-66909943 None:intergenic 30.0%
CTATATAGTATGCGTTCTAA+GGG + chr3_2:66909925-66909944 None:intergenic 30.0%
ACTATATAGTATGCGTTCTA+AGG + chr3_2:66909926-66909945 None:intergenic 30.0%
!! CCGATTTGGAAAATTATATG+AGG - chr3_2:66909954-66909973 Msa0419000:intron 30.0%
TACAATTTAGTCATACGGAT+TGG + chr3_2:66910049-66910068 None:intergenic 30.0%
! ACATGTTTTACTGTTGTCAT+TGG - chr3_2:66910237-66910256 Msa0419000:intron 30.0%
CCAACATAAATTCTTATGAC+AGG + chr3_2:66910417-66910436 None:intergenic 30.0%
CCTGTCATAAGAATTTATGT+TGG - chr3_2:66910414-66910433 Msa0419000:intron 30.0%
!!! AGTTTTTAGTGAACATGGTA+AGG - chr3_2:66910476-66910495 Msa0419000:CDS 30.0%
GTACTTTGCTAAATTATCAG+TGG - chr3_2:66910627-66910646 Msa0419000:intron 30.0%
!! GCATTGATAATGACATGTTA+TGG - chr3_2:66910656-66910675 Msa0419000:intron 30.0%
TGACATGTTATGGAAATTGA+AGG - chr3_2:66910666-66910685 Msa0419000:CDS 30.0%
GACATGTTATGGAAATTGAA+GGG - chr3_2:66910667-66910686 Msa0419000:CDS 30.0%
! ATAACTCTAGCAGTTGATAT+AGG + chr3_2:66910893-66910912 None:intergenic 30.0%
! TTTTATAGACTTCTAGCAAG+AGG + chr3_2:66911112-66911131 None:intergenic 30.0%
TGCTAGAAGTCTATAAAACT+CGG - chr3_2:66911114-66911133 Msa0419000:five_prime_UTR 30.0%
! ACAAATAATTTTGCTTCCTC+AGG + chr3_2:66909122-66909141 None:intergenic 30.0%
GAGGAAGCAAAATTATTTGT+TGG - chr3_2:66909122-66909141 Msa0419000:intron 30.0%
TTCTCACTATCAACATCAAA+AGG + chr3_2:66909155-66909174 None:intergenic 30.0%
!! TGATGTTGATAGTGAGAAAT+TGG - chr3_2:66909157-66909176 Msa0419000:intron 30.0%
AATGTCGATATTTCAAGCTA+TGG - chr3_2:66909475-66909494 Msa0419000:CDS 30.0%
! GTGACAACCATTTTGAATTT+TGG - chr3_2:66909734-66909753 Msa0419000:intron 30.0%
AAAGAACTCAAGATAGGATT+AGG + chr3_2:66909768-66909787 None:intergenic 30.0%
AAGAGTAAAGAACTCAAGAT+AGG + chr3_2:66909774-66909793 None:intergenic 30.0%
TTTCCATCTTGAACAAATAG+AGG - chr3_2:66909810-66909829 Msa0419000:intron 30.0%
TTTCCTCTATTTGTTCAAGA+TGG + chr3_2:66909816-66909835 None:intergenic 30.0%
!! AGACACATAAGAAGTATTAC+AGG + chr3_2:66909877-66909896 None:intergenic 30.0%
! TATATAGTATGCGTTCTAAG+GGG + chr3_2:66909924-66909943 None:intergenic 30.0%
CTATATAGTATGCGTTCTAA+GGG + chr3_2:66909925-66909944 None:intergenic 30.0%
ACTATATAGTATGCGTTCTA+AGG + chr3_2:66909926-66909945 None:intergenic 30.0%
!! CCGATTTGGAAAATTATATG+AGG - chr3_2:66909954-66909973 Msa0419000:intron 30.0%
TACAATTTAGTCATACGGAT+TGG + chr3_2:66910049-66910068 None:intergenic 30.0%
! ACATGTTTTACTGTTGTCAT+TGG - chr3_2:66910237-66910256 Msa0419000:intron 30.0%
CCAACATAAATTCTTATGAC+AGG + chr3_2:66910417-66910436 None:intergenic 30.0%
CCTGTCATAAGAATTTATGT+TGG - chr3_2:66910414-66910433 Msa0419000:intron 30.0%
!!! AGTTTTTAGTGAACATGGTA+AGG - chr3_2:66910476-66910495 Msa0419000:CDS 30.0%
GTACTTTGCTAAATTATCAG+TGG - chr3_2:66910627-66910646 Msa0419000:intron 30.0%
!! GCATTGATAATGACATGTTA+TGG - chr3_2:66910656-66910675 Msa0419000:intron 30.0%
TGACATGTTATGGAAATTGA+AGG - chr3_2:66910666-66910685 Msa0419000:CDS 30.0%
GACATGTTATGGAAATTGAA+GGG - chr3_2:66910667-66910686 Msa0419000:CDS 30.0%
! ATAACTCTAGCAGTTGATAT+AGG + chr3_2:66910893-66910912 None:intergenic 30.0%
! TTTTATAGACTTCTAGCAAG+AGG + chr3_2:66911112-66911131 None:intergenic 30.0%
TGCTAGAAGTCTATAAAACT+CGG - chr3_2:66911114-66911133 Msa0419000:five_prime_UTR 30.0%
! AATAATTTTGCTTCCTCAGG+TGG + chr3_2:66909119-66909138 None:intergenic 35.0%
TTTATAACAGAGAAACGGAC+CGG - chr3_2:66909318-66909337 Msa0419000:CDS 35.0%
TTACATAGGCGTTAAACTTC+TGG + chr3_2:66909400-66909419 None:intergenic 35.0%
AGATAAGATGCAATGAAAGC+TGG - chr3_2:66909560-66909579 Msa0419000:intron 35.0%
!! ACCATTTTGAATTTTGGTGC+TGG - chr3_2:66909740-66909759 Msa0419000:intron 35.0%
ACCAGCACCAAAATTCAAAA+TGG + chr3_2:66909744-66909763 None:intergenic 35.0%
TATAGTTGCAATCTCCGATT+TGG - chr3_2:66909940-66909959 Msa0419000:intron 35.0%
ACATACTTTGTATGAAGCAC+TGG + chr3_2:66910003-66910022 None:intergenic 35.0%
! TTGTTGTGTTTTCTTGGTTC+TGG - chr3_2:66910283-66910302 Msa0419000:intron 35.0%
!! TTTATGTTGGTAACTTGCCA+TGG - chr3_2:66910427-66910446 Msa0419000:intron 35.0%
!! TTATGTTGGTAACTTGCCAT+GGG - chr3_2:66910428-66910447 Msa0419000:intron 35.0%
CTACTATTATCAACTTCCCA+TGG + chr3_2:66910447-66910466 None:intergenic 35.0%
!! CATGGGAAGTTGATAATAGT+AGG - chr3_2:66910445-66910464 Msa0419000:intron 35.0%
!!! GAGCAAGTTTTTAGTGAACA+TGG - chr3_2:66910471-66910490 Msa0419000:CDS 35.0%
!!! TAATTTTCTTCTGGAGTAGC+CGG - chr3_2:66910948-66910967 Msa0419000:CDS 35.0%
! AATAATTTTGCTTCCTCAGG+TGG + chr3_2:66909119-66909138 None:intergenic 35.0%
TTTATAACAGAGAAACGGAC+CGG - chr3_2:66909318-66909337 Msa0419000:CDS 35.0%
TTACATAGGCGTTAAACTTC+TGG + chr3_2:66909400-66909419 None:intergenic 35.0%
AGATAAGATGCAATGAAAGC+TGG - chr3_2:66909560-66909579 Msa0419000:intron 35.0%
!! ACCATTTTGAATTTTGGTGC+TGG - chr3_2:66909740-66909759 Msa0419000:intron 35.0%
ACCAGCACCAAAATTCAAAA+TGG + chr3_2:66909744-66909763 None:intergenic 35.0%
TATAGTTGCAATCTCCGATT+TGG - chr3_2:66909940-66909959 Msa0419000:intron 35.0%
ACATACTTTGTATGAAGCAC+TGG + chr3_2:66910003-66910022 None:intergenic 35.0%
! TTGTTGTGTTTTCTTGGTTC+TGG - chr3_2:66910283-66910302 Msa0419000:intron 35.0%
!! TTTATGTTGGTAACTTGCCA+TGG - chr3_2:66910427-66910446 Msa0419000:intron 35.0%
!! TTATGTTGGTAACTTGCCAT+GGG - chr3_2:66910428-66910447 Msa0419000:intron 35.0%
CTACTATTATCAACTTCCCA+TGG + chr3_2:66910447-66910466 None:intergenic 35.0%
!! CATGGGAAGTTGATAATAGT+AGG - chr3_2:66910445-66910464 Msa0419000:intron 35.0%
!!! GAGCAAGTTTTTAGTGAACA+TGG - chr3_2:66910471-66910490 Msa0419000:CDS 35.0%
!!! TAATTTTCTTCTGGAGTAGC+CGG - chr3_2:66910948-66910967 Msa0419000:CDS 35.0%
GGTAGAGAAGGAGAAAAATG+AGG + chr3_2:66908738-66908757 None:intergenic 40.0%
AGAAGGAATGAAGGTAGAGA+AGG + chr3_2:66908750-66908769 None:intergenic 40.0%
GAAGGGTTTAGAAGGAATGA+AGG + chr3_2:66908759-66908778 None:intergenic 40.0%
TGGTGATAGAAGGGTTTAGA+AGG + chr3_2:66908767-66908786 None:intergenic 40.0%
ATGGTTAGGGATTTGAAGAG+GGG + chr3_2:66908834-66908853 None:intergenic 40.0%
CATGGTTAGGGATTTGAAGA+GGG + chr3_2:66908835-66908854 None:intergenic 40.0%
! TTTGGATTTGGAGTGGAAGA+GGG + chr3_2:66908880-66908899 None:intergenic 40.0%
! TGATTTTGTTGAACCACCTG+AGG - chr3_2:66909103-66909122 Msa0419000:intron 40.0%
TGTTACCTCAGCAATCTCAA+CGG + chr3_2:66909207-66909226 None:intergenic 40.0%
GTCGATATTTCAAGCTATGG+TGG - chr3_2:66909478-66909497 Msa0419000:CDS 40.0%
!! CATACGGATTGGAGTTTCAA+TGG + chr3_2:66910038-66910057 None:intergenic 40.0%
GTAGTCCTGTCACATGAAAA+TGG + chr3_2:66910310-66910329 None:intergenic 40.0%
! AAGATCGTTGGCTGTTAACA+AGG - chr3_2:66910335-66910354 Msa0419000:intron 40.0%
GTTAACAAGGCTTCTCCTAA+AGG - chr3_2:66910348-66910367 Msa0419000:intron 40.0%
GTAGTCTATGATAGAGAGAC+TGG - chr3_2:66910513-66910532 Msa0419000:CDS 40.0%
TTATACCTGACCATCAAGAG+CGG + chr3_2:66910601-66910620 None:intergenic 40.0%
! TTTTATGGGCTCGTGTTGAA+TGG - chr3_2:66910698-66910717 Msa0419000:CDS 40.0%
TTTATGGGCTCGTGTTGAAT+GGG - chr3_2:66910699-66910718 Msa0419000:CDS 40.0%
TGTGCTTTCATTGCAGAGTT+TGG - chr3_2:66910789-66910808 Msa0419000:CDS 40.0%
CTTTCATTGCAGAGTTTGGA+GGG - chr3_2:66910793-66910812 Msa0419000:CDS 40.0%
TACTTGACGAGCTACTCAAA+AGG + chr3_2:66910866-66910885 None:intergenic 40.0%
GGATAAACCTAGCATGAAAC+CGG + chr3_2:66910970-66910989 None:intergenic 40.0%
GAAAGAGAAAAAGACTGCAG+AGG - chr3_2:66911064-66911083 Msa0419000:exon 40.0%
GGTAGAGAAGGAGAAAAATG+AGG + chr3_2:66908738-66908757 None:intergenic 40.0%
AGAAGGAATGAAGGTAGAGA+AGG + chr3_2:66908750-66908769 None:intergenic 40.0%
GAAGGGTTTAGAAGGAATGA+AGG + chr3_2:66908759-66908778 None:intergenic 40.0%
TGGTGATAGAAGGGTTTAGA+AGG + chr3_2:66908767-66908786 None:intergenic 40.0%
ATGGTTAGGGATTTGAAGAG+GGG + chr3_2:66908834-66908853 None:intergenic 40.0%
CATGGTTAGGGATTTGAAGA+GGG + chr3_2:66908835-66908854 None:intergenic 40.0%
! TTTGGATTTGGAGTGGAAGA+GGG + chr3_2:66908880-66908899 None:intergenic 40.0%
! TGATTTTGTTGAACCACCTG+AGG - chr3_2:66909103-66909122 Msa0419000:intron 40.0%
TGTTACCTCAGCAATCTCAA+CGG + chr3_2:66909207-66909226 None:intergenic 40.0%
GTCGATATTTCAAGCTATGG+TGG - chr3_2:66909478-66909497 Msa0419000:CDS 40.0%
!! CATACGGATTGGAGTTTCAA+TGG + chr3_2:66910038-66910057 None:intergenic 40.0%
GTAGTCCTGTCACATGAAAA+TGG + chr3_2:66910310-66910329 None:intergenic 40.0%
! AAGATCGTTGGCTGTTAACA+AGG - chr3_2:66910335-66910354 Msa0419000:intron 40.0%
GTTAACAAGGCTTCTCCTAA+AGG - chr3_2:66910348-66910367 Msa0419000:intron 40.0%
GTAGTCTATGATAGAGAGAC+TGG - chr3_2:66910513-66910532 Msa0419000:CDS 40.0%
TTATACCTGACCATCAAGAG+CGG + chr3_2:66910601-66910620 None:intergenic 40.0%
! TTTTATGGGCTCGTGTTGAA+TGG - chr3_2:66910698-66910717 Msa0419000:CDS 40.0%
TTTATGGGCTCGTGTTGAAT+GGG - chr3_2:66910699-66910718 Msa0419000:CDS 40.0%
TGTGCTTTCATTGCAGAGTT+TGG - chr3_2:66910789-66910808 Msa0419000:CDS 40.0%
CTTTCATTGCAGAGTTTGGA+GGG - chr3_2:66910793-66910812 Msa0419000:CDS 40.0%
TACTTGACGAGCTACTCAAA+AGG + chr3_2:66910866-66910885 None:intergenic 40.0%
GGATAAACCTAGCATGAAAC+CGG + chr3_2:66910970-66910989 None:intergenic 40.0%
GAAAGAGAAAAAGACTGCAG+AGG - chr3_2:66911064-66911083 Msa0419000:exon 40.0%
! AGTGGTGGAAGTGATAGACA+TGG + chr3_2:66908811-66908830 None:intergenic 45.0%
CCATGGTTAGGGATTTGAAG+AGG + chr3_2:66908836-66908855 None:intergenic 45.0%
CCTCTTCAAATCCCTAACCA+TGG - chr3_2:66908833-66908852 Msa0419000:three_prime_UTR 45.0%
! GTTTGGATTTGGAGTGGAAG+AGG + chr3_2:66908881-66908900 None:intergenic 45.0%
! GAAGAAGGTGGGTTTGGATT+TGG + chr3_2:66908892-66908911 None:intergenic 45.0%
ATGGAGAGATGGAGATTGAG+GGG + chr3_2:66908930-66908949 None:intergenic 45.0%
GATGGAGAGATGGAGATTGA+GGG + chr3_2:66908931-66908950 None:intergenic 45.0%
TGATGGAGAGATGGAGATTG+AGG + chr3_2:66908932-66908951 None:intergenic 45.0%
!!! GGTTGGTTTTGATGGAGAGA+TGG + chr3_2:66908941-66908960 None:intergenic 45.0%
!!! GAAAGAGCGGTTGGTTTTGA+TGG + chr3_2:66908949-66908968 None:intergenic 45.0%
CCTTCTTGAGCAACGAACAA+GGG + chr3_2:66908975-66908994 None:intergenic 45.0%
AGCTTCTTCGTCTAGAGAAG+TGG + chr3_2:66909009-66909028 None:intergenic 45.0%
ACTTCTCTAGACGAAGAAGC+TGG - chr3_2:66909008-66909027 Msa0419000:exon 45.0%
AAGCTGGATTGAGTCTCGAT+TGG - chr3_2:66909024-66909043 Msa0419000:CDS 45.0%
AGCTGGATTGAGTCTCGATT+GGG - chr3_2:66909025-66909044 Msa0419000:CDS 45.0%
TTCAGCAGAATCATCACCAG+CGG + chr3_2:66909081-66909100 None:intergenic 45.0%
!! GCCATGCTTTTTGAACAAGC+CGG - chr3_2:66909179-66909198 Msa0419000:intron 45.0%
! TCCGGCTTGTTCAAAAAGCA+TGG + chr3_2:66909183-66909202 None:intergenic 45.0%
CAAATCCAAAACCACGACTC+CGG + chr3_2:66909340-66909359 None:intergenic 45.0%
AAACTTCTGGACAGCAGACT+CGG + chr3_2:66909387-66909406 None:intergenic 45.0%
! CTGGTCCATTTTCATGTGAC+AGG - chr3_2:66910302-66910321 Msa0419000:intron 45.0%
TTCATGTGACAGGACTACGA+TGG - chr3_2:66910312-66910331 Msa0419000:intron 45.0%
ATGACAGGTTCAAAACTGCG+AGG + chr3_2:66910402-66910421 None:intergenic 45.0%
GCTTTCATTGCAGAGTTTGG+AGG - chr3_2:66910792-66910811 Msa0419000:CDS 45.0%
AGAGAAAAAGACTGCAGAGG+TGG - chr3_2:66911067-66911086 Msa0419000:exon 45.0%
! AGTGGTGGAAGTGATAGACA+TGG + chr3_2:66908811-66908830 None:intergenic 45.0%
CCATGGTTAGGGATTTGAAG+AGG + chr3_2:66908836-66908855 None:intergenic 45.0%
CCTCTTCAAATCCCTAACCA+TGG - chr3_2:66908833-66908852 Msa0419000:three_prime_UTR 45.0%
! GTTTGGATTTGGAGTGGAAG+AGG + chr3_2:66908881-66908900 None:intergenic 45.0%
! GAAGAAGGTGGGTTTGGATT+TGG + chr3_2:66908892-66908911 None:intergenic 45.0%
ATGGAGAGATGGAGATTGAG+GGG + chr3_2:66908930-66908949 None:intergenic 45.0%
GATGGAGAGATGGAGATTGA+GGG + chr3_2:66908931-66908950 None:intergenic 45.0%
TGATGGAGAGATGGAGATTG+AGG + chr3_2:66908932-66908951 None:intergenic 45.0%
!!! GGTTGGTTTTGATGGAGAGA+TGG + chr3_2:66908941-66908960 None:intergenic 45.0%
!!! GAAAGAGCGGTTGGTTTTGA+TGG + chr3_2:66908949-66908968 None:intergenic 45.0%
CCTTCTTGAGCAACGAACAA+GGG + chr3_2:66908975-66908994 None:intergenic 45.0%
AGCTTCTTCGTCTAGAGAAG+TGG + chr3_2:66909009-66909028 None:intergenic 45.0%
ACTTCTCTAGACGAAGAAGC+TGG - chr3_2:66909008-66909027 Msa0419000:exon 45.0%
AAGCTGGATTGAGTCTCGAT+TGG - chr3_2:66909024-66909043 Msa0419000:CDS 45.0%
AGCTGGATTGAGTCTCGATT+GGG - chr3_2:66909025-66909044 Msa0419000:CDS 45.0%
TTCAGCAGAATCATCACCAG+CGG + chr3_2:66909081-66909100 None:intergenic 45.0%
!! GCCATGCTTTTTGAACAAGC+CGG - chr3_2:66909179-66909198 Msa0419000:intron 45.0%
! TCCGGCTTGTTCAAAAAGCA+TGG + chr3_2:66909183-66909202 None:intergenic 45.0%
CAAATCCAAAACCACGACTC+CGG + chr3_2:66909340-66909359 None:intergenic 45.0%
AAACTTCTGGACAGCAGACT+CGG + chr3_2:66909387-66909406 None:intergenic 45.0%
! CTGGTCCATTTTCATGTGAC+AGG - chr3_2:66910302-66910321 Msa0419000:intron 45.0%
TTCATGTGACAGGACTACGA+TGG - chr3_2:66910312-66910331 Msa0419000:intron 45.0%
ATGACAGGTTCAAAACTGCG+AGG + chr3_2:66910402-66910421 None:intergenic 45.0%
GCTTTCATTGCAGAGTTTGG+AGG - chr3_2:66910792-66910811 Msa0419000:CDS 45.0%
AGAGAAAAAGACTGCAGAGG+TGG - chr3_2:66911067-66911086 Msa0419000:exon 45.0%
!! TGGTGGTGGTGGTGATAGAA+GGG + chr3_2:66908776-66908795 None:intergenic 50.0%
!! AGTGATAGACATGGTGGTGG+TGG + chr3_2:66908802-66908821 None:intergenic 50.0%
GGAAGTGATAGACATGGTGG+TGG + chr3_2:66908805-66908824 None:intergenic 50.0%
GGTGGAAGTGATAGACATGG+TGG + chr3_2:66908808-66908827 None:intergenic 50.0%
TAGGGATTTGAAGAGGGGAG+TGG + chr3_2:66908829-66908848 None:intergenic 50.0%
! AGGTGGGTTTGGATTTGGAG+TGG + chr3_2:66908887-66908906 None:intergenic 50.0%
! AAGGGAGAAGAAGGTGGGTT+TGG + chr3_2:66908898-66908917 None:intergenic 50.0%
TTTGGAGGGAAGGGAGAAGA+AGG + chr3_2:66908907-66908926 None:intergenic 50.0%
ATTGAGGGGTTTGGAGGGAA+GGG + chr3_2:66908916-66908935 None:intergenic 50.0%
TGGAGATTGAGGGGTTTGGA+GGG + chr3_2:66908921-66908940 None:intergenic 50.0%
ATGGAGATTGAGGGGTTTGG+AGG + chr3_2:66908922-66908941 None:intergenic 50.0%
GAGATGGAGATTGAGGGGTT+TGG + chr3_2:66908925-66908944 None:intergenic 50.0%
CGAACAAGGGAGAGAAAGAG+CGG + chr3_2:66908962-66908981 None:intergenic 50.0%
CCCTTGTTCGTTGCTCAAGA+AGG - chr3_2:66908972-66908991 Msa0419000:three_prime_UTR 50.0%
GCCTTCTTGAGCAACGAACA+AGG + chr3_2:66908976-66908995 None:intergenic 50.0%
ACCAGCGGTTTCAGTTTCAG+CGG + chr3_2:66909066-66909085 None:intergenic 50.0%
CTCAGCAATCTCAACGGTTC+CGG + chr3_2:66909201-66909220 None:intergenic 50.0%
AGCAGACTCGGCTTCTTCAA+CGG + chr3_2:66909375-66909394 None:intergenic 50.0%
GGACTACGATGGAAGATCGT+TGG - chr3_2:66910323-66910342 Msa0419000:intron 50.0%
ACTGGTCGATCACGTGGATT+TGG - chr3_2:66910531-66910550 Msa0419000:CDS 50.0%
CATTGCAGAGTTTGGAGGGT+AGG - chr3_2:66910797-66910816 Msa0419000:CDS 50.0%
!! TGGTGGTGGTGGTGATAGAA+GGG + chr3_2:66908776-66908795 None:intergenic 50.0%
!! AGTGATAGACATGGTGGTGG+TGG + chr3_2:66908802-66908821 None:intergenic 50.0%
GGAAGTGATAGACATGGTGG+TGG + chr3_2:66908805-66908824 None:intergenic 50.0%
GGTGGAAGTGATAGACATGG+TGG + chr3_2:66908808-66908827 None:intergenic 50.0%
TAGGGATTTGAAGAGGGGAG+TGG + chr3_2:66908829-66908848 None:intergenic 50.0%
! AGGTGGGTTTGGATTTGGAG+TGG + chr3_2:66908887-66908906 None:intergenic 50.0%
! AAGGGAGAAGAAGGTGGGTT+TGG + chr3_2:66908898-66908917 None:intergenic 50.0%
TTTGGAGGGAAGGGAGAAGA+AGG + chr3_2:66908907-66908926 None:intergenic 50.0%
ATTGAGGGGTTTGGAGGGAA+GGG + chr3_2:66908916-66908935 None:intergenic 50.0%
TGGAGATTGAGGGGTTTGGA+GGG + chr3_2:66908921-66908940 None:intergenic 50.0%
ATGGAGATTGAGGGGTTTGG+AGG + chr3_2:66908922-66908941 None:intergenic 50.0%
GAGATGGAGATTGAGGGGTT+TGG + chr3_2:66908925-66908944 None:intergenic 50.0%
CGAACAAGGGAGAGAAAGAG+CGG + chr3_2:66908962-66908981 None:intergenic 50.0%
CCCTTGTTCGTTGCTCAAGA+AGG - chr3_2:66908972-66908991 Msa0419000:three_prime_UTR 50.0%
GCCTTCTTGAGCAACGAACA+AGG + chr3_2:66908976-66908995 None:intergenic 50.0%
ACCAGCGGTTTCAGTTTCAG+CGG + chr3_2:66909066-66909085 None:intergenic 50.0%
CTCAGCAATCTCAACGGTTC+CGG + chr3_2:66909201-66909220 None:intergenic 50.0%
AGCAGACTCGGCTTCTTCAA+CGG + chr3_2:66909375-66909394 None:intergenic 50.0%
GGACTACGATGGAAGATCGT+TGG - chr3_2:66910323-66910342 Msa0419000:intron 50.0%
ACTGGTCGATCACGTGGATT+TGG - chr3_2:66910531-66910550 Msa0419000:CDS 50.0%
CATTGCAGAGTTTGGAGGGT+AGG - chr3_2:66910797-66910816 Msa0419000:CDS 50.0%
!! GTGGTGGTGGTGGTGATAGA+AGG + chr3_2:66908777-66908796 None:intergenic 55.0%
!! GATAGACATGGTGGTGGTGG+TGG + chr3_2:66908799-66908818 None:intergenic 55.0%
GGATTTGAAGAGGGGAGTGG+TGG + chr3_2:66908826-66908845 None:intergenic 55.0%
GCAGGAATCGGCCATGGTTA+GGG + chr3_2:66908847-66908866 None:intergenic 55.0%
GGATGAGAGGAGGCAGGAAT+CGG + chr3_2:66908859-66908878 None:intergenic 55.0%
AGTGGAAGAGGGATGAGAGG+AGG + chr3_2:66908869-66908888 None:intergenic 55.0%
TGGAGTGGAAGAGGGATGAG+AGG + chr3_2:66908872-66908891 None:intergenic 55.0%
GAGGGAAGGGAGAAGAAGGT+GGG + chr3_2:66908903-66908922 None:intergenic 55.0%
GATTGAGGGGTTTGGAGGGA+AGG + chr3_2:66908917-66908936 None:intergenic 55.0%
CAAGGGAGAGAAAGAGCGGT+TGG + chr3_2:66908958-66908977 None:intergenic 55.0%
GGTTTCAGTTTCAGCGGCGT+CGG + chr3_2:66909060-66909079 None:intergenic 55.0%
CGGAACCGTTGAGATTGCTG+AGG - chr3_2:66909199-66909218 Msa0419000:intron 55.0%
! AGAGAGACTGGTCGATCACG+TGG - chr3_2:66910525-66910544 Msa0419000:CDS 55.0%
GATGCCATTGCCGCTCTTGA+TGG - chr3_2:66910588-66910607 Msa0419000:intron 55.0%
CTGACCATCAAGAGCGGCAA+TGG + chr3_2:66910595-66910614 None:intergenic 55.0%
! CATTGCCGCTCTTGATGGTC+AGG - chr3_2:66910593-66910612 Msa0419000:intron 55.0%
ACTCAAAAGGAGCCGCGTCT+GGG + chr3_2:66910853-66910872 None:intergenic 55.0%
TACTCAAAAGGAGCCGCGTC+TGG + chr3_2:66910854-66910873 None:intergenic 55.0%
! GGAGTAGCCGGTTTCATGCT+AGG - chr3_2:66910960-66910979 Msa0419000:CDS 55.0%
AGACTGCAGAGGTGGAGAGT+AGG - chr3_2:66911075-66911094 Msa0419000:exon 55.0%
CAGAGGTGGAGAGTAGGCAT+GGG - chr3_2:66911081-66911100 Msa0419000:five_prime_UTR 55.0%
!! GTGGTGGTGGTGGTGATAGA+AGG + chr3_2:66908777-66908796 None:intergenic 55.0%
!! GATAGACATGGTGGTGGTGG+TGG + chr3_2:66908799-66908818 None:intergenic 55.0%
GGATTTGAAGAGGGGAGTGG+TGG + chr3_2:66908826-66908845 None:intergenic 55.0%
GCAGGAATCGGCCATGGTTA+GGG + chr3_2:66908847-66908866 None:intergenic 55.0%
GGATGAGAGGAGGCAGGAAT+CGG + chr3_2:66908859-66908878 None:intergenic 55.0%
AGTGGAAGAGGGATGAGAGG+AGG + chr3_2:66908869-66908888 None:intergenic 55.0%
TGGAGTGGAAGAGGGATGAG+AGG + chr3_2:66908872-66908891 None:intergenic 55.0%
GAGGGAAGGGAGAAGAAGGT+GGG + chr3_2:66908903-66908922 None:intergenic 55.0%
GATTGAGGGGTTTGGAGGGA+AGG + chr3_2:66908917-66908936 None:intergenic 55.0%
CAAGGGAGAGAAAGAGCGGT+TGG + chr3_2:66908958-66908977 None:intergenic 55.0%
GGTTTCAGTTTCAGCGGCGT+CGG + chr3_2:66909060-66909079 None:intergenic 55.0%
CGGAACCGTTGAGATTGCTG+AGG - chr3_2:66909199-66909218 Msa0419000:intron 55.0%
! AGAGAGACTGGTCGATCACG+TGG - chr3_2:66910525-66910544 Msa0419000:CDS 55.0%
GATGCCATTGCCGCTCTTGA+TGG - chr3_2:66910588-66910607 Msa0419000:intron 55.0%
CTGACCATCAAGAGCGGCAA+TGG + chr3_2:66910595-66910614 None:intergenic 55.0%
! CATTGCCGCTCTTGATGGTC+AGG - chr3_2:66910593-66910612 Msa0419000:intron 55.0%
ACTCAAAAGGAGCCGCGTCT+GGG + chr3_2:66910853-66910872 None:intergenic 55.0%
TACTCAAAAGGAGCCGCGTC+TGG + chr3_2:66910854-66910873 None:intergenic 55.0%
! GGAGTAGCCGGTTTCATGCT+AGG - chr3_2:66910960-66910979 Msa0419000:CDS 55.0%
AGACTGCAGAGGTGGAGAGT+AGG - chr3_2:66911075-66911094 Msa0419000:exon 55.0%
CAGAGGTGGAGAGTAGGCAT+GGG - chr3_2:66911081-66911100 Msa0419000:five_prime_UTR 55.0%
!! AGACATGGTGGTGGTGGTGG+TGG + chr3_2:66908796-66908815 None:intergenic 60.0%
GGCAGGAATCGGCCATGGTT+AGG + chr3_2:66908848-66908867 None:intergenic 60.0%
GAAGAGGGATGAGAGGAGGC+AGG + chr3_2:66908865-66908884 None:intergenic 60.0%
GGAGGGAAGGGAGAAGAAGG+TGG + chr3_2:66908904-66908923 None:intergenic 60.0%
GCCGCTGAAACTGAAACCGC+TGG - chr3_2:66909062-66909081 Msa0419000:CDS 60.0%
AGAGAAACGGACCGGAGTCG+TGG - chr3_2:66909326-66909345 Msa0419000:CDS 60.0%
! ACGGACCGGAGTCGTGGTTT+TGG - chr3_2:66909332-66909351 Msa0419000:CDS 60.0%
CGCTCGGGTCGAGATCCTTT+AGG + chr3_2:66910366-66910385 None:intergenic 60.0%
AGGTGCACGCTCAGTACGCT+CGG + chr3_2:66910382-66910401 None:intergenic 60.0%
! GAGTGAGCGTTGCCGAAGAC+AGG - chr3_2:66910827-66910846 Msa0419000:CDS 60.0%
GCAGAGGTGGAGAGTAGGCA+TGG - chr3_2:66911080-66911099 Msa0419000:five_prime_UTR 60.0%
!! AGACATGGTGGTGGTGGTGG+TGG + chr3_2:66908796-66908815 None:intergenic 60.0%
GGCAGGAATCGGCCATGGTT+AGG + chr3_2:66908848-66908867 None:intergenic 60.0%
GAAGAGGGATGAGAGGAGGC+AGG + chr3_2:66908865-66908884 None:intergenic 60.0%
GGAGGGAAGGGAGAAGAAGG+TGG + chr3_2:66908904-66908923 None:intergenic 60.0%
GCCGCTGAAACTGAAACCGC+TGG - chr3_2:66909062-66909081 Msa0419000:CDS 60.0%
AGAGAAACGGACCGGAGTCG+TGG - chr3_2:66909326-66909345 Msa0419000:CDS 60.0%
! ACGGACCGGAGTCGTGGTTT+TGG - chr3_2:66909332-66909351 Msa0419000:CDS 60.0%
CGCTCGGGTCGAGATCCTTT+AGG + chr3_2:66910366-66910385 None:intergenic 60.0%
AGGTGCACGCTCAGTACGCT+CGG + chr3_2:66910382-66910401 None:intergenic 60.0%
! GAGTGAGCGTTGCCGAAGAC+AGG - chr3_2:66910827-66910846 Msa0419000:CDS 60.0%
GCAGAGGTGGAGAGTAGGCA+TGG - chr3_2:66911080-66911099 Msa0419000:five_prime_UTR 60.0%
!! CATGGTGGTGGTGGTGGTGG+TGG + chr3_2:66908793-66908812 None:intergenic 65.0%
GAGGAGGCAGGAATCGGCCA+TGG + chr3_2:66908853-66908872 None:intergenic 65.0%
!! GTTTCAGCGGCGTCGGCAGT+GGG + chr3_2:66909053-66909072 None:intergenic 65.0%
!! AGTTTCAGCGGCGTCGGCAG+TGG + chr3_2:66909054-66909073 None:intergenic 65.0%
GGTGCACGCTCAGTACGCTC+GGG + chr3_2:66910381-66910400 None:intergenic 65.0%
!! CATGGTGGTGGTGGTGGTGG+TGG + chr3_2:66908793-66908812 None:intergenic 65.0%
GAGGAGGCAGGAATCGGCCA+TGG + chr3_2:66908853-66908872 None:intergenic 65.0%
!! GTTTCAGCGGCGTCGGCAGT+GGG + chr3_2:66909053-66909072 None:intergenic 65.0%
!! AGTTTCAGCGGCGTCGGCAG+TGG + chr3_2:66909054-66909073 None:intergenic 65.0%
GGTGCACGCTCAGTACGCTC+GGG + chr3_2:66910381-66910400 None:intergenic 65.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG + chr3_2:66908784-66908803 None:intergenic 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG + chr3_2:66908784-66908803 None:intergenic 70.0%
GCCGAAGACAGGCCCAGACG+CGG - chr3_2:66910838-66910857 Msa0419000:CDS 70.0%
GCCGCGTCTGGGCCTGTCTT+CGG + chr3_2:66910842-66910861 None:intergenic 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG + chr3_2:66908784-66908803 None:intergenic 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG + chr3_2:66908784-66908803 None:intergenic 70.0%
GCCGAAGACAGGCCCAGACG+CGG - chr3_2:66910838-66910857 Msa0419000:CDS 70.0%
GCCGCGTCTGGGCCTGTCTT+CGG + chr3_2:66910842-66910861 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 66908734 66911152 66908734 ID=Msa0419000;Name=Msa0419000
chr3_2 mRNA 66908734 66911152 66908734 ID=Msa0419000-mRNA-1;Parent=Msa0419000;Name=Msa0419000-mRNA-1;_AED=0.04;_eAED=0.04;_QI=76|1|1|1|1|1|4|282|289
chr3_2 exon 66908734 66909081 66908734 ID=Msa0419000-mRNA-1:exon:15484;Parent=Msa0419000-mRNA-1
chr3_2 exon 66909272 66909562 66909272 ID=Msa0419000-mRNA-1:exon:15483;Parent=Msa0419000-mRNA-1
chr3_2 exon 66910471 66910572 66910471 ID=Msa0419000-mRNA-1:exon:15482;Parent=Msa0419000-mRNA-1
chr3_2 exon 66910666 66911152 66910666 ID=Msa0419000-mRNA-1:exon:15481;Parent=Msa0419000-mRNA-1
chr3_2 five_prime_UTR 66911077 66911152 66911077 ID=Msa0419000-mRNA-1:five_prime_utr;Parent=Msa0419000-mRNA-1
chr3_2 CDS 66910666 66911076 66910666 ID=Msa0419000-mRNA-1:cds;Parent=Msa0419000-mRNA-1
chr3_2 CDS 66910471 66910572 66910471 ID=Msa0419000-mRNA-1:cds;Parent=Msa0419000-mRNA-1
chr3_2 CDS 66909272 66909562 66909272 ID=Msa0419000-mRNA-1:cds;Parent=Msa0419000-mRNA-1
chr3_2 CDS 66909016 66909081 66909016 ID=Msa0419000-mRNA-1:cds;Parent=Msa0419000-mRNA-1
chr3_2 three_prime_UTR 66908734 66909015 66908734 ID=Msa0419000-mRNA-1:three_prime_utr;Parent=Msa0419000-mRNA-1
Gene Sequence

>Msa0419000

ATGTCTATCACTTCCACCACTCCCCTCTTCAAATCCCTAACCATGGCCGATTCCTGCCTCCTCTCATCCCTCTTCCACTCCAAATCCAAACCCACCTTCTTCTCCCTTCCCTCCAAACCCCTCAATCTCCATCTCTCCATCAAAACCAACCGCTCTTTCTCTCCCTTGTTCGTTGCTCAAGAAGGCGACACGCTCACCACTTCTCTAGACGAAGAAGCTGGATTGAGTCTCGATTGGGAGCCCACTGCCGACGCCGCTGAAACTGAAACCGCTGGTGATGATTCTGCTGAAGCTGATTTTGTTGAACCACCTGAGGAAGCAAAATTATTTGTTGGTAATTTGCCTTTTGATGTTGATAGTGAGAAATTGGCCATGCTTTTTGAACAAGCCGGAACCGTTGAGATTGCTGAGGTTATTTATAACAGAGAAACGGACCGGAGTCGTGGTTTTGGATTTGTAACTATGAGTACCGTTGAAGAAGCCGAGTCTGCTGTCCAGAAGTTTAACGCCTATGACTACGATGGAAGATCGTTGGCTGTTAACAAGGCTTCTCCTAAAGGATCTCGACCCGAGCGTACTGAGCGTGCACCTCGCAGTTTTGAACCTGTCATAAGAATTTATGTTGGTAACTTGCCATGGGAAGTTGATAATAGTAGGCTAGAGCAAGTTTTTAGTGAACATGGTAAGGTTGTGAGTGCTCGAGTAGTCTATGATAGAGAGACTGGTCGATCACGTGGATTTGGCTTTGTCACAATGTCCGATGAAACTGAAATGAATGATGCCATTGCCGCTCTTGATGGTCAGAGTTTGGAGGGTAGGACAATAAGAGTGAGCGTTGCCGAAGACAGGCCCAGACGCGGCTCCTTTTGA
Protein sequence

>Msa0419000

MSITSTTPLFKSLTMADSCLLSSLFHSKSKPTFFSLPSKPLNLHLSIKTNRSFSPLFVAQEGDTLTTSLDEEAGLSLDWEPTADAAETETAGDDSAEADFVEPPEEAKLFVGNLPFDVDSEKLAMLFEQAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAESAVQKFNAYDYDGRSLAVNKASPKGSRPERTERAPRSFEPVIRIYVGNLPWEVDNSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDRPRRGSF*