Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421970 | XP_014626390.1 | 83.333 | 60 | 8 | 1 | 1 | 60 | 1 | 58 | 9.40e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421970 | sp|Q5BJC2|KISHA_DANRE | 58.000 | 50 | 20 | 1 | 1 | 49 | 1 | 50 | 9.00e-13 | 61.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421970 | G7JC15 | 100.000 | 49 | 0 | 0 | 1 | 49 | 1 | 49 | 1.30e-26 | 102 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373410 | Msa0421970 | 0.912881 | 1.171268e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421970 | MtrunA17_Chr3g0122711 | 100.000 | 49 | 0 | 0 | 1 | 49 | 1 | 49 | 2.50e-30 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421970 | AT5G20165.1 | 87.755 | 49 | 6 | 0 | 1 | 49 | 1 | 49 | 1.81e-26 | 93.2 |
| Msa0421970 | AT5G20165.2 | 85.714 | 49 | 7 | 0 | 1 | 49 | 1 | 49 | 3.17e-26 | 92.4 |
| Msa0421970 | AT5G20165.4 | 85.714 | 49 | 7 | 0 | 1 | 49 | 1 | 49 | 3.17e-26 | 92.4 |
| Msa0421970 | AT5G20165.3 | 57.534 | 73 | 8 | 1 | 1 | 50 | 1 | 73 | 8.03e-21 | 79.7 |
Find 33 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTAAGTAATGGAGTTTC+AGG | 0.223099 | 3_2:+71004972 | None:intergenic |
| AATAATTGGTTAACCAGATT+TGG | 0.226536 | 3_2:+71004931 | None:intergenic |
| ATTTCTTACCGTGATACTTT+TGG | 0.252819 | 3_2:-71007444 | Msa0421970:CDS |
| AAAGTTATAAAGAGAATAAT+TGG | 0.254171 | 3_2:+71004917 | None:intergenic |
| ACAGATTTCGCGGTTTCTTC+TGG | 0.260290 | 3_2:-71006575 | Msa0421970:intron |
| CTTTACCATGCTTTATTTGA+AGG | 0.319198 | 3_2:-71004800 | Msa0421970:three_prime_UTR |
| ACGGTTACTCCTCTCGATTC+AGG | 0.334771 | 3_2:-71008073 | Msa0421970:intron |
| ATAATTGGTTAACCAGATTT+GGG | 0.349037 | 3_2:+71004932 | None:intergenic |
| ATTCTAAGAACACGTTAAAA+TGG | 0.352910 | 3_2:-71007717 | Msa0421970:intron |
| GAAAAGTGATTCTTCCTTCC+GGG | 0.360403 | 3_2:-71008140 | Msa0421970:five_prime_UTR |
| CGAAAAGTGATTCTTCCTTC+CGG | 0.360595 | 3_2:-71008141 | Msa0421970:five_prime_UTR |
| TCAGTATAGCAGCCCAAATC+TGG | 0.373284 | 3_2:-71004944 | Msa0421970:exon |
| AGTTTGCTTGCCCTTTCCTT+AGG | 0.375007 | 3_2:-71004852 | Msa0421970:three_prime_UTR |
| GCAATCCTTGAGCAGAGAAC+TGG | 0.378392 | 3_2:-71007383 | Msa0421970:CDS |
| GTTCTCTGCTCAAGGATTGC+TGG | 0.379427 | 3_2:+71007386 | None:intergenic |
| AATACAATTGCATACTGAAA+AGG | 0.474076 | 3_2:+71004880 | None:intergenic |
| TTCTGGAAGGCGGCAAGAAT+AGG | 0.480907 | 3_2:-71006558 | Msa0421970:intron |
| ATCAACTAATTCCTAAGGAA+AGG | 0.490706 | 3_2:+71004841 | None:intergenic |
| TTTACCCAGTTCTCTGCTCA+AGG | 0.503479 | 3_2:+71007378 | None:intergenic |
| CTGAAAAGAAAGCTAAGTAA+TGG | 0.504547 | 3_2:+71004963 | None:intergenic |
| TCAACTAATTCCTAAGGAAA+GGG | 0.518094 | 3_2:+71004842 | None:intergenic |
| TGTACCTAAAATTATTCCAT+CGG | 0.529936 | 3_2:-71004997 | Msa0421970:CDS |
| GTATCACGGTAAGAAATGAA+TGG | 0.533132 | 3_2:+71007450 | None:intergenic |
| ATTTCGCGGTTTCTTCTGGA+AGG | 0.552138 | 3_2:-71006571 | Msa0421970:CDS |
| TTCACGCTCACTGGGATCAA+CGG | 0.552737 | 3_2:-71008092 | Msa0421970:five_prime_UTR |
| AAAAGATTGAAGAAGAAGAG+TGG | 0.558833 | 3_2:-71007743 | Msa0421970:five_prime_UTR |
| CAATCCTTGAGCAGAGAACT+GGG | 0.569211 | 3_2:-71007382 | Msa0421970:intron |
| AATGGAGTTTCAGGCTCCGA+TGG | 0.570316 | 3_2:+71004981 | None:intergenic |
| TTGCATCTTGAAGAAAGTGC+AGG | 0.584838 | 3_2:+71007412 | None:intergenic |
| CTCAAACACTCTAGAGACAA+AGG | 0.595850 | 3_2:-71008190 | Msa0421970:five_prime_UTR |
| TCGCGGTTTCTTCTGGAAGG+CGG | 0.603957 | 3_2:-71006568 | Msa0421970:CDS |
| GAATTCCTTCAAATAAAGCA+TGG | 0.623706 | 3_2:+71004795 | None:intergenic |
| ACATATTCCCAAAAGTATCA+CGG | 0.645312 | 3_2:+71007436 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTGATTTTTTTTTTTTTAA+AGG | + | chr3_2:71004750-71004769 | None:intergenic | 10.0% |
| !!! | AATAAAATAATGGTTTTTAA+GGG | + | chr3_2:71006082-71006101 | None:intergenic | 10.0% |
| !!! | TAATAAAATAATGGTTTTTA+AGG | + | chr3_2:71006083-71006102 | None:intergenic | 10.0% |
| !! | CGTAAAAACTAATAAAATAA+TGG | + | chr3_2:71006092-71006111 | None:intergenic | 15.0% |
| !!! | TTTATAAATTTTATCTTTGC+AGG | - | chr3_2:71007863-71007882 | Msa0421970:intron | 15.0% |
| !!! | TTATAAATTTTATCTTTGCA+GGG | - | chr3_2:71007864-71007883 | Msa0421970:intron | 15.0% |
| !! | AAAGTTATAAAGAGAATAAT+TGG | + | chr3_2:71008061-71008080 | None:intergenic | 15.0% |
| !! | AACAATTACAGAAGATATTA+AGG | - | chr3_2:71005019-71005038 | Msa0421970:CDS | 20.0% |
| !! | AATTGAGATTAATCGTAAAA+AGG | + | chr3_2:71005091-71005110 | None:intergenic | 20.0% |
| !!! | AGTTTTTGTGAAAGAAATTA+TGG | - | chr3_2:71005385-71005404 | Msa0421970:intron | 20.0% |
| !!! | AAATGCTTTTGACATTTTTT+TGG | - | chr3_2:71005472-71005491 | Msa0421970:intron | 20.0% |
| !!! | AAGAGATCATTTTTAAATGA+AGG | + | chr3_2:71006260-71006279 | None:intergenic | 20.0% |
| !!! | ATTGGTTTCATTTTTCATAA+TGG | - | chr3_2:71006328-71006347 | Msa0421970:intron | 20.0% |
| !! | TAGACATAAAATGATAATTG+AGG | + | chr3_2:71006471-71006490 | None:intergenic | 20.0% |
| !!! | TTGTGTTTTTATTCAAACTT+TGG | - | chr3_2:71006517-71006536 | Msa0421970:intron | 20.0% |
| !! | AAAGCTAAATAAAACTTCAA+GGG | + | chr3_2:71006600-71006619 | None:intergenic | 20.0% |
| !!! | TATGGTTTTTTGAGTTAATT+TGG | - | chr3_2:71006678-71006697 | Msa0421970:intron | 20.0% |
| !!! | ATGGTTTTTTGAGTTAATTT+GGG | - | chr3_2:71006679-71006698 | Msa0421970:intron | 20.0% |
| !! | TTACTAGTATGATTAGATAA+AGG | + | chr3_2:71007112-71007131 | None:intergenic | 20.0% |
| !! | GATTCTATTATTGAACAAAT+TGG | + | chr3_2:71007375-71007394 | None:intergenic | 20.0% |
| !! | TTAAAGGAAATTGAAGTTAA+TGG | + | chr3_2:71007504-71007523 | None:intergenic | 20.0% |
| !!! | AATTAGCTTATTCTACTTAT+GGG | + | chr3_2:71007760-71007779 | None:intergenic | 20.0% |
| !!! | AAATTAGCTTATTCTACTTA+TGG | + | chr3_2:71007761-71007780 | None:intergenic | 20.0% |
| !!! | TATAAATTTTATCTTTGCAG+GGG | - | chr3_2:71007865-71007884 | Msa0421970:intron | 20.0% |
| !! | AAAAAATCAACTAATTCCTA+AGG | + | chr3_2:71008142-71008161 | None:intergenic | 20.0% |
| ! | TAGATCTACACATAAAATGA+CGG | + | chr3_2:71004946-71004965 | None:intergenic | 25.0% |
| !! | ATTTTCTGTCATGATTTTCT+AGG | - | chr3_2:71005050-71005069 | Msa0421970:CDS | 25.0% |
| ! | ACGAAAAAGTTTGAAGATAA+TGG | + | chr3_2:71005126-71005145 | None:intergenic | 25.0% |
| !! | ATTCTAAGAACACGTTAAAA+TGG | - | chr3_2:71005258-71005277 | Msa0421970:intron | 25.0% |
| !! | TTTTGTGAAAGAAATTATGG+TGG | - | chr3_2:71005388-71005407 | Msa0421970:intron | 25.0% |
| ! | AAGACATAAGAATTAGTACA+TGG | + | chr3_2:71005647-71005666 | None:intergenic | 25.0% |
| ! | GTACTAATTCTTATGTCTTA+TGG | - | chr3_2:71005648-71005667 | Msa0421970:intron | 25.0% |
| !!! | TATTGGTTTAAGATACACTA+AGG | + | chr3_2:71005680-71005699 | None:intergenic | 25.0% |
| !! | TTTAAGTTCTCTCAAAATTG+AGG | - | chr3_2:71006118-71006137 | Msa0421970:intron | 25.0% |
| !!! | ATTTTAAAGATCCATGCAAA+GGG | - | chr3_2:71006141-71006160 | Msa0421970:intron | 25.0% |
| ! | TATTATCAAACACTTGCAAA+AGG | + | chr3_2:71006218-71006237 | None:intergenic | 25.0% |
| ! | AGTGCAGAATAAATATCTAA+TGG | + | chr3_2:71006308-71006327 | None:intergenic | 25.0% |
| ! | AGATATTTATTCTGCACTAT+TGG | - | chr3_2:71006310-71006329 | Msa0421970:intron | 25.0% |
| ! | GAAAGCTAAATAAAACTTCA+AGG | + | chr3_2:71006601-71006620 | None:intergenic | 25.0% |
| ! | ACCATAATCATAAGTCATTA+AGG | + | chr3_2:71006664-71006683 | None:intergenic | 25.0% |
| ! | AGAGAAAAAATATTCATGTG+TGG | - | chr3_2:71006930-71006949 | Msa0421970:intron | 25.0% |
| ! | AAAAGTTTGTGAACCATATA+TGG | - | chr3_2:71007198-71007217 | Msa0421970:intron | 25.0% |
| ! | AAAGTTTGTGAACCATATAT+GGG | - | chr3_2:71007199-71007218 | Msa0421970:intron | 25.0% |
| ! | ATCAAATAAACATCCATTTG+GGG | + | chr3_2:71007465-71007484 | None:intergenic | 25.0% |
| ! | CATCAAATAAACATCCATTT+GGG | + | chr3_2:71007466-71007485 | None:intergenic | 25.0% |
| ! | GATGTTTATTTGATGCTTAT+GGG | - | chr3_2:71007471-71007490 | Msa0421970:intron | 25.0% |
| ! | TTAAAAGAGTAAAGCCTTTA+AGG | + | chr3_2:71007656-71007675 | None:intergenic | 25.0% |
| ! | AAGTAGAATAAGCTAATTTG+AGG | - | chr3_2:71007762-71007781 | Msa0421970:intron | 25.0% |
| !! | ATAAATTTTATCTTTGCAGG+GGG | - | chr3_2:71007866-71007885 | Msa0421970:intron | 25.0% |
| ! | TGTACCTAAAATTATTCCAT+CGG | - | chr3_2:71007978-71007997 | Msa0421970:intron | 25.0% |
| ! | ATAATTGGTTAACCAGATTT+GGG | + | chr3_2:71008046-71008065 | None:intergenic | 25.0% |
| ! | AATAATTGGTTAACCAGATT+TGG | + | chr3_2:71008047-71008066 | None:intergenic | 25.0% |
| ! | AATACAATTGCATACTGAAA+AGG | + | chr3_2:71008098-71008117 | None:intergenic | 25.0% |
| !!! | AATCGTTGTTGTTATTTTCC+CGG | + | chr3_2:71004856-71004875 | None:intergenic | 30.0% |
| AAAAAATTACCTGAATCGAG+AGG | + | chr3_2:71004914-71004933 | None:intergenic | 30.0% | |
| TGTAGATCTATTCTTAATCC+AGG | - | chr3_2:71004956-71004975 | Msa0421970:exon | 30.0% | |
| TAATTCCAGTAATCAATGAG+TGG | + | chr3_2:71005152-71005171 | None:intergenic | 30.0% | |
| AAAAGATTGAAGAAGAAGAG+TGG | - | chr3_2:71005232-71005251 | Msa0421970:intron | 30.0% | |
| ACTGTAAATTCTCTTCACTT+TGG | - | chr3_2:71005288-71005307 | Msa0421970:intron | 30.0% | |
| TTCACTTTGGTATTTGTGTT+TGG | - | chr3_2:71005301-71005320 | Msa0421970:intron | 30.0% | |
| TTGGAGCTTCAACAAAATTA+TGG | + | chr3_2:71005360-71005379 | None:intergenic | 30.0% | |
| CTTTCACAAAAACTACACTT+TGG | + | chr3_2:71005379-71005398 | None:intergenic | 30.0% | |
| ! | ATTTCTTACCGTGATACTTT+TGG | - | chr3_2:71005531-71005550 | Msa0421970:intron | 30.0% |
| ! | TTTCTTACCGTGATACTTTT+GGG | - | chr3_2:71005532-71005551 | Msa0421970:intron | 30.0% |
| !! | ACATATTCCCAAAAGTATCA+CGG | + | chr3_2:71005542-71005561 | None:intergenic | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+CGG | - | chr3_2:71005780-71005799 | Msa0421970:intron | 30.0% |
| TTCTTTCTCTCTCTTCTTAT+TGG | + | chr3_2:71005949-71005968 | None:intergenic | 30.0% | |
| AGAAAGAAAGTTGTCACAAA+TGG | - | chr3_2:71005961-71005980 | Msa0421970:intron | 30.0% | |
| !! | GATTTTAAAGATCCATGCAA+AGG | - | chr3_2:71006140-71006159 | Msa0421970:intron | 30.0% |
| ! | TTCAAACTTTGGAAAGAGAT+TGG | - | chr3_2:71006528-71006547 | Msa0421970:intron | 30.0% |
| GCCTTAATGACTTATGATTA+TGG | - | chr3_2:71006660-71006679 | Msa0421970:intron | 30.0% | |
| AATGACATTCAAGAACTACA+AGG | + | chr3_2:71006794-71006813 | None:intergenic | 30.0% | |
| CAATGACAATCTATTTCACA+AGG | + | chr3_2:71006853-71006872 | None:intergenic | 30.0% | |
| TGTAAATAACCATACAAGCA+CGG | + | chr3_2:71006980-71006999 | None:intergenic | 30.0% | |
| ACAACTTACTATTGAGTAGA+CGG | + | chr3_2:71007083-71007102 | None:intergenic | 30.0% | |
| AAATTCATGCATACATCACT+TGG | + | chr3_2:71007282-71007301 | None:intergenic | 30.0% | |
| TGCACTTTATAACTCTGATA+TGG | - | chr3_2:71007333-71007352 | Msa0421970:intron | 30.0% | |
| GCACTTTATAACTCTGATAT+GGG | - | chr3_2:71007334-71007353 | Msa0421970:intron | 30.0% | |
| ATATTGTGATATCAGCACAA+AGG | - | chr3_2:71007436-71007455 | Msa0421970:CDS | 30.0% | |
| GCATCAAATAAACATCCATT+TGG | + | chr3_2:71007467-71007486 | None:intergenic | 30.0% | |
| GGATGTTTATTTGATGCTTA+TGG | - | chr3_2:71007470-71007489 | Msa0421970:CDS | 30.0% | |
| CTGAAAAGAAAGCTAAGTAA+TGG | + | chr3_2:71008015-71008034 | None:intergenic | 30.0% | |
| TCAACTAATTCCTAAGGAAA+GGG | + | chr3_2:71008136-71008155 | None:intergenic | 30.0% | |
| ATCAACTAATTCCTAAGGAA+AGG | + | chr3_2:71008137-71008156 | None:intergenic | 30.0% | |
| !! | CTTTACCATGCTTTATTTGA+AGG | - | chr3_2:71008175-71008194 | Msa0421970:five_prime_UTR | 30.0% |
| GAATTCCTTCAAATAAAGCA+TGG | + | chr3_2:71008183-71008202 | None:intergenic | 30.0% | |
| ! | TTCTAATTTTTCACGCTCAC+TGG | - | chr3_2:71004874-71004893 | Msa0421970:three_prime_UTR | 35.0% |
| ! | TCTAATTTTTCACGCTCACT+GGG | - | chr3_2:71004875-71004894 | Msa0421970:three_prime_UTR | 35.0% |
| !! | ACATAAAATGACGGATGAGA+AGG | + | chr3_2:71004937-71004956 | None:intergenic | 35.0% |
| GGAATTATTGCATCTTGTTC+TGG | - | chr3_2:71005165-71005184 | Msa0421970:intron | 35.0% | |
| CATGCAATTAGCAATCACAT+TGG | + | chr3_2:71005200-71005219 | None:intergenic | 35.0% | |
| AAGAACACGTTAAAATGGTG+AGG | - | chr3_2:71005263-71005282 | Msa0421970:intron | 35.0% | |
| GTATCACGGTAAGAAATGAA+TGG | + | chr3_2:71005528-71005547 | None:intergenic | 35.0% | |
| ! | TAGCTGCTATTTGACAGTAT+TGG | + | chr3_2:71005697-71005716 | None:intergenic | 35.0% |
| !! | ACAACGAGTTGTTTTCAACA+TGG | - | chr3_2:71006023-71006042 | Msa0421970:intron | 35.0% |
| !! | CAACGAGTTGTTTTCAACAT+GGG | - | chr3_2:71006024-71006043 | Msa0421970:intron | 35.0% |
| ! | TCAACATGGGTTAAAGATAG+TGG | - | chr3_2:71006037-71006056 | Msa0421970:intron | 35.0% |
| AAACACTTGCAAAAGGAATC+AGG | + | chr3_2:71006211-71006230 | None:intergenic | 35.0% | |
| AGAGATTGGAGTGGAAAATA+AGG | - | chr3_2:71006542-71006561 | Msa0421970:intron | 35.0% | |
| GAGATTGGAGTGGAAAATAA+GGG | - | chr3_2:71006543-71006562 | Msa0421970:intron | 35.0% | |
| AGATTGGAGTGGAAAATAAG+GGG | - | chr3_2:71006544-71006563 | Msa0421970:intron | 35.0% | |
| ATAAAACTTCAAGGGTAACC+TGG | + | chr3_2:71006592-71006611 | None:intergenic | 35.0% | |
| ! | TTTTATGCCCTTTATCCATG+TGG | - | chr3_2:71006632-71006651 | Msa0421970:intron | 35.0% |
| GTCAAGATAATATCTCTGAC+TGG | + | chr3_2:71006958-71006977 | None:intergenic | 35.0% | |
| GCTTGTATGGTTATTTACAC+AGG | - | chr3_2:71006981-71007000 | Msa0421970:intron | 35.0% | |
| TCACTTGGATGATCAAGTAA+CGG | + | chr3_2:71007267-71007286 | None:intergenic | 35.0% | |
| !! | TCAATATAGAAGGGCATTCA+TGG | + | chr3_2:71007556-71007575 | None:intergenic | 35.0% |
| CACGAGTCTTCAATATAGAA+GGG | + | chr3_2:71007565-71007584 | None:intergenic | 35.0% | |
| TGTTGTAGAAATTCCTATCC+TGG | - | chr3_2:71007613-71007632 | Msa0421970:intron | 35.0% | |
| TCTCTTCTTCCATACCTTAA+AGG | - | chr3_2:71007639-71007658 | Msa0421970:intron | 35.0% | |
| !! | AGAGTAAAGCCTTTAAGGTA+TGG | + | chr3_2:71007651-71007670 | None:intergenic | 35.0% |
| CCATGAATGACAATTCAGAA+CGG | + | chr3_2:71007680-71007699 | None:intergenic | 35.0% | |
| CATTCATGGTAGCATTAATC+CGG | - | chr3_2:71007691-71007710 | Msa0421970:intron | 35.0% | |
| TCTTGTTAGCAACTAGCAAA+AGG | - | chr3_2:71007730-71007749 | Msa0421970:five_prime_UTR | 35.0% | |
| GTAGTATAACAAGTTCCACA+CGG | - | chr3_2:71007821-71007840 | Msa0421970:intron | 35.0% | |
| !! | CTACAGTTTTGTATGCTACA+TGG | - | chr3_2:71007930-71007949 | Msa0421970:intron | 35.0% |
| ! | AAGCTAAGTAATGGAGTTTC+AGG | + | chr3_2:71008006-71008025 | None:intergenic | 35.0% |
| ! | CTCAAACACTCTAGAGACAA+AGG | - | chr3_2:71004785-71004804 | Msa0421970:three_prime_UTR | 40.0% |
| !! | AGGAAGAATCACTTTTCGGT+TGG | + | chr3_2:71004832-71004851 | None:intergenic | 40.0% |
| !! | CGGAAGGAAGAATCACTTTT+CGG | + | chr3_2:71004836-71004855 | None:intergenic | 40.0% |
| CGAAAAGTGATTCTTCCTTC+CGG | - | chr3_2:71004834-71004853 | Msa0421970:three_prime_UTR | 40.0% | |
| GAAAAGTGATTCTTCCTTCC+GGG | - | chr3_2:71004835-71004854 | Msa0421970:three_prime_UTR | 40.0% | |
| !!! | GTTGTTGTTATTTTCCCGGA+AGG | + | chr3_2:71004852-71004871 | None:intergenic | 40.0% |
| ATGCGAAAATCGATGAAACC+TGG | + | chr3_2:71004977-71004996 | None:intergenic | 40.0% | |
| TTGCGTGTTTGACAAAACCA+CGG | - | chr3_2:71005329-71005348 | Msa0421970:intron | 40.0% | |
| ! | TTGCATCTTGAAGAAAGTGC+AGG | + | chr3_2:71005566-71005585 | None:intergenic | 40.0% |
| GTACATGGAAAGAGATGTAG+AGG | + | chr3_2:71005632-71005651 | None:intergenic | 40.0% | |
| CTGTCAAATAGCAGCTATAG+TGG | - | chr3_2:71005700-71005719 | Msa0421970:intron | 40.0% | |
| CGTGTATTGCAAAACACTAG+CGG | + | chr3_2:71005754-71005773 | None:intergenic | 40.0% | |
| ! | TGATTTTCTCTCCCTTTGCA+TGG | + | chr3_2:71006155-71006174 | None:intergenic | 40.0% |
| AAAAGGAATCAGGAAGGTTG+CGG | + | chr3_2:71006201-71006220 | None:intergenic | 40.0% | |
| ACTTGCAAAAGGAATCAGGA+AGG | + | chr3_2:71006207-71006226 | None:intergenic | 40.0% | |
| ! | TGTTTTCCTGACAGATTTCG+CGG | - | chr3_2:71006390-71006409 | Msa0421970:intron | 40.0% |
| GAGGCAGTAGCAAATCAAAT+AGG | + | chr3_2:71006452-71006471 | None:intergenic | 40.0% | |
| ! | ACTTTGGAAAGAGATTGGAG+TGG | - | chr3_2:71006533-71006552 | Msa0421970:intron | 40.0% |
| AGTGGAAAATAAGGGGTGAA+AGG | - | chr3_2:71006551-71006570 | Msa0421970:intron | 40.0% | |
| GGTGAAAGGAGTCATAGTTT+GGG | - | chr3_2:71006565-71006584 | Msa0421970:CDS | 40.0% | |
| GCATCAACCACATGGATAAA+GGG | + | chr3_2:71006642-71006661 | None:intergenic | 40.0% | |
| ! | TCATTAAGGCATCAACCACA+TGG | + | chr3_2:71006650-71006669 | None:intergenic | 40.0% |
| TTATCTTGACCGTGCTTGTA+TGG | - | chr3_2:71006968-71006987 | Msa0421970:intron | 40.0% | |
| ! | AGCTATGGGTTGTTTCATGA+TGG | - | chr3_2:71007025-71007044 | Msa0421970:intron | 40.0% |
| ! | GCTATGGGTTGTTTCATGAT+GGG | - | chr3_2:71007026-71007045 | Msa0421970:intron | 40.0% |
| TTGTGAACCATATATGGGTG+TGG | - | chr3_2:71007204-71007223 | Msa0421970:intron | 40.0% | |
| ACCTTTCAATGGAGATCTGT+TGG | - | chr3_2:71007228-71007247 | Msa0421970:intron | 40.0% | |
| ACCAACAGATCTCCATTGAA+AGG | + | chr3_2:71007232-71007251 | None:intergenic | 40.0% | |
| CACTTGGATGATCAAGTAAC+GGG | + | chr3_2:71007266-71007285 | None:intergenic | 40.0% | |
| ! | TTCCTTTAAAGACTTCCTCC+AGG | - | chr3_2:71007515-71007534 | Msa0421970:intron | 40.0% |
| ! | TCCTTTAAAGACTTCCTCCA+GGG | - | chr3_2:71007516-71007535 | Msa0421970:intron | 40.0% |
| CCACGAGTCTTCAATATAGA+AGG | + | chr3_2:71007566-71007585 | None:intergenic | 40.0% | |
| CCTTCTATATTGAAGACTCG+TGG | - | chr3_2:71007563-71007582 | Msa0421970:intron | 40.0% | |
| AAAAACAGAGAGAGAGAGAG+AGG | + | chr3_2:71007589-71007608 | None:intergenic | 40.0% | |
| GAAGAAGAGAAAACCAGGAT+AGG | + | chr3_2:71007629-71007648 | None:intergenic | 40.0% | |
| GTATGGAAGAAGAGAAAACC+AGG | + | chr3_2:71007634-71007653 | None:intergenic | 40.0% | |
| ! | CCGTTCTGAATTGTCATTCA+TGG | - | chr3_2:71007677-71007696 | Msa0421970:intron | 40.0% |
| ATGGTAGCATTAATCCGGAA+CGG | - | chr3_2:71007696-71007715 | Msa0421970:intron | 40.0% | |
| !! | TAGTGTTGATTATCACCGTG+TGG | + | chr3_2:71007839-71007858 | None:intergenic | 40.0% |
| ! | GGCTCCGATGGAATAATTTT+AGG | + | chr3_2:71007985-71008004 | None:intergenic | 40.0% |
| ! | GTGTGCCACTCATTGATTAC+TGG | - | chr3_2:71005144-71005163 | Msa0421970:intron | 45.0% |
| !! | ACAAAATTATGGTGCCACCG+TGG | + | chr3_2:71005349-71005368 | None:intergenic | 45.0% |
| CAATCCTTGAGCAGAGAACT+GGG | - | chr3_2:71005593-71005612 | Msa0421970:intron | 45.0% | |
| TTTACCCAGTTCTCTGCTCA+AGG | + | chr3_2:71005600-71005619 | None:intergenic | 45.0% | |
| !! | AGCAGCTATAGTGGTGCTAT+AGG | - | chr3_2:71005709-71005728 | Msa0421970:intron | 45.0% |
| !! | GCAGCTATAGTGGTGCTATA+GGG | - | chr3_2:71005710-71005729 | Msa0421970:intron | 45.0% |
| !! | ATAGTGGTGCTATAGGGTAG+CGG | - | chr3_2:71005716-71005735 | Msa0421970:intron | 45.0% |
| !! | GGGTTAAAGATAGTGGATGC+AGG | - | chr3_2:71006044-71006063 | Msa0421970:intron | 45.0% |
| AAAGGAATCAGGAAGGTTGC+GGG | + | chr3_2:71006200-71006219 | None:intergenic | 45.0% | |
| AAGAAACCGCGAAATCTGTC+AGG | + | chr3_2:71006399-71006418 | None:intergenic | 45.0% | |
| ACAGATTTCGCGGTTTCTTC+TGG | - | chr3_2:71006400-71006419 | Msa0421970:intron | 45.0% | |
| ATTTCGCGGTTTCTTCTGGA+AGG | - | chr3_2:71006404-71006423 | Msa0421970:intron | 45.0% | |
| GGGTGAAAGGAGTCATAGTT+TGG | - | chr3_2:71006564-71006583 | Msa0421970:CDS | 45.0% | |
| GGCATCAACCACATGGATAA+AGG | + | chr3_2:71006643-71006662 | None:intergenic | 45.0% | |
| TTAATGACCCACACCCCTAT+TGG | - | chr3_2:71006728-71006747 | Msa0421970:intron | 45.0% | |
| TCGCAAACAACCTGCCAATA+GGG | + | chr3_2:71006745-71006764 | None:intergenic | 45.0% | |
| ! | TTGTTTGCGACATCGGTTAC+TGG | - | chr3_2:71006755-71006774 | Msa0421970:intron | 45.0% |
| TTTAAGTCCGTGGGTAGCTA+TGG | - | chr3_2:71007010-71007029 | Msa0421970:intron | 45.0% | |
| TTAAGTCCGTGGGTAGCTAT+GGG | - | chr3_2:71007011-71007030 | Msa0421970:intron | 45.0% | |
| AAACAACCCATAGCTACCCA+CGG | + | chr3_2:71007020-71007039 | None:intergenic | 45.0% | |
| !! | AAAGGTGCCACACCCATATA+TGG | + | chr3_2:71007214-71007233 | None:intergenic | 45.0% |
| TCCCTGGAGGAAGTCTTTAA+AGG | + | chr3_2:71007520-71007539 | None:intergenic | 45.0% | |
| TGGTAGCATTAATCCGGAAC+GGG | - | chr3_2:71007697-71007716 | Msa0421970:intron | 45.0% | |
| TCAGTATAGCAGCCCAAATC+TGG | - | chr3_2:71008031-71008050 | Msa0421970:intron | 45.0% | |
| ! | AGTTTGCTTGCCCTTTCCTT+AGG | - | chr3_2:71008123-71008142 | Msa0421970:five_prime_UTR | 45.0% |
| !!! | CTTTTTTTATATATATTTTA+TGG | + | chr3_2:71007183-71007202 | None:intergenic | 5.0% |
| TTCACGCTCACTGGGATCAA+CGG | - | chr3_2:71004883-71004902 | Msa0421970:three_prime_UTR | 50.0% | |
| ACGGTTACTCCTCTCGATTC+AGG | - | chr3_2:71004902-71004921 | Msa0421970:three_prime_UTR | 50.0% | |
| CGTGTTTGACAAAACCACGG+TGG | - | chr3_2:71005332-71005351 | Msa0421970:intron | 50.0% | |
| GTTCTCTGCTCAAGGATTGC+TGG | + | chr3_2:71005592-71005611 | None:intergenic | 50.0% | |
| GCAATCCTTGAGCAGAGAAC+TGG | - | chr3_2:71005592-71005611 | Msa0421970:intron | 50.0% | |
| AATCAGGAAGGTTGCGGGAA+AGG | + | chr3_2:71006195-71006214 | None:intergenic | 50.0% | |
| ! | TTCTGGAAGGCGGCAAGAAT+AGG | - | chr3_2:71006417-71006436 | Msa0421970:intron | 50.0% |
| AGGAGTCATAGTTTGGGTCC+AGG | - | chr3_2:71006571-71006590 | Msa0421970:CDS | 50.0% | |
| CGCAAACAACCTGCCAATAG+GGG | + | chr3_2:71006744-71006763 | None:intergenic | 50.0% | |
| GTCGCAAACAACCTGCCAAT+AGG | + | chr3_2:71006746-71006765 | None:intergenic | 50.0% | |
| TGGCAGGTTGTTTGCGACAT+CGG | - | chr3_2:71006748-71006767 | Msa0421970:intron | 50.0% | |
| TTAGTGCTGCACCAGCATGT+TGG | - | chr3_2:71006823-71006842 | Msa0421970:intron | 50.0% | |
| TAGTGCTGCACCAGCATGTT+GGG | - | chr3_2:71006824-71006843 | Msa0421970:intron | 50.0% | |
| CACAAGGAATCCCAACATGC+TGG | + | chr3_2:71006837-71006856 | None:intergenic | 50.0% | |
| AGGTGAGCGTTTAAGTCCGT+GGG | - | chr3_2:71007001-71007020 | Msa0421970:intron | 50.0% | |
| ATGGGTGTGGCACCTTTCAA+TGG | - | chr3_2:71007217-71007236 | Msa0421970:intron | 50.0% | |
| AGCACAAAGGTAGCCCCAAA+TGG | - | chr3_2:71007449-71007468 | Msa0421970:CDS | 50.0% | |
| AAAGACTTCCTCCAGGGAAG+TGG | - | chr3_2:71007522-71007541 | Msa0421970:intron | 50.0% | |
| GGTAGCATTAATCCGGAACG+GGG | - | chr3_2:71007698-71007717 | Msa0421970:intron | 50.0% | |
| ATTAATCCGGAACGGGGTGT+TGG | - | chr3_2:71007704-71007723 | Msa0421970:intron | 50.0% | |
| AGATATCCAACACCCCGTTC+CGG | + | chr3_2:71007713-71007732 | None:intergenic | 50.0% | |
| AATGGAGTTTCAGGCTCCGA+TGG | + | chr3_2:71007997-71008016 | None:intergenic | 50.0% | |
| GGTTGCGGGAAAGGAATGGA+GGG | + | chr3_2:71006186-71006205 | None:intergenic | 55.0% | |
| AGGTTGCGGGAAAGGAATGG+AGG | + | chr3_2:71006187-71006206 | None:intergenic | 55.0% | |
| GGAAGGTTGCGGGAAAGGAA+TGG | + | chr3_2:71006190-71006209 | None:intergenic | 55.0% | |
| ! | TCGCGGTTTCTTCTGGAAGG+CGG | - | chr3_2:71006407-71006426 | Msa0421970:intron | 55.0% |
| ! | CAACCTGCCAATAGGGGTGT+GGG | + | chr3_2:71006738-71006757 | None:intergenic | 55.0% |
| ACAACCTGCCAATAGGGGTG+TGG | + | chr3_2:71006739-71006758 | None:intergenic | 55.0% | |
| CAGGTGAGCGTTTAAGTCCG+TGG | - | chr3_2:71007000-71007019 | Msa0421970:intron | 55.0% | |
| TGAGCTATCCACTTCCCTGG+AGG | + | chr3_2:71007533-71007552 | None:intergenic | 55.0% | |
| TGGTGAGCTATCCACTTCCC+TGG | + | chr3_2:71007536-71007555 | None:intergenic | 55.0% | |
| TGACCCACACCCCTATTGGC+AGG | - | chr3_2:71006732-71006751 | Msa0421970:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 71004739 | 71008258 | 71004739 | ID=Msa0421970;Name=Msa0421970 |
| chr3_2 | mRNA | 71004739 | 71008258 | 71004739 | ID=Msa0421970-mRNA-1;Parent=Msa0421970;Name=Msa0421970-mRNA-1;_AED=0.06;_eAED=0.06;_QI=234|0.75|1|1|0|0|5|219|99 |
| chr3_2 | exon | 71004739 | 71005112 | 71004739 | ID=Msa0421970-mRNA-1:exon:17283;Parent=Msa0421970-mRNA-1 |
| chr3_2 | exon | 71006559 | 71006593 | 71006559 | ID=Msa0421970-mRNA-1:exon:17282;Parent=Msa0421970-mRNA-1 |
| chr3_2 | exon | 71007383 | 71007489 | 71007383 | ID=Msa0421970-mRNA-1:exon:17281;Parent=Msa0421970-mRNA-1 |
| chr3_2 | exon | 71007718 | 71007769 | 71007718 | ID=Msa0421970-mRNA-1:exon:17280;Parent=Msa0421970-mRNA-1 |
| chr3_2 | exon | 71008074 | 71008258 | 71008074 | ID=Msa0421970-mRNA-1:exon:17279;Parent=Msa0421970-mRNA-1 |
| chr3_2 | five_prime_UTR | 71008074 | 71008258 | 71008074 | ID=Msa0421970-mRNA-1:five_prime_utr;Parent=Msa0421970-mRNA-1 |
| chr3_2 | five_prime_UTR | 71007721 | 71007769 | 71007721 | ID=Msa0421970-mRNA-1:five_prime_utr;Parent=Msa0421970-mRNA-1 |
| chr3_2 | CDS | 71007718 | 71007720 | 71007718 | ID=Msa0421970-mRNA-1:cds;Parent=Msa0421970-mRNA-1 |
| chr3_2 | CDS | 71007383 | 71007489 | 71007383 | ID=Msa0421970-mRNA-1:cds;Parent=Msa0421970-mRNA-1 |
| chr3_2 | CDS | 71006559 | 71006593 | 71006559 | ID=Msa0421970-mRNA-1:cds;Parent=Msa0421970-mRNA-1 |
| chr3_2 | CDS | 71004958 | 71005112 | 71004958 | ID=Msa0421970-mRNA-1:cds;Parent=Msa0421970-mRNA-1 |
| chr3_2 | three_prime_UTR | 71004739 | 71004957 | 71004739 | ID=Msa0421970-mRNA-1:three_prime_utr;Parent=Msa0421970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
