Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373410 | XP_014626390.1 | 83.333 | 60 | 8 | 1 | 1 | 60 | 1 | 58 | 9.40e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373410 | sp|Q5BJC2|KISHA_DANRE | 58.000 | 50 | 20 | 1 | 1 | 49 | 1 | 50 | 9.00e-13 | 61.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373410 | G7JC15 | 100.000 | 49 | 0 | 0 | 1 | 49 | 1 | 49 | 1.30e-26 | 102 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373410 | Msa0385500 | 0.801449 | 8.956792e-49 | -8.615850e-47 |
| Msa0373410 | Msa0421970 | 0.912881 | 1.171268e-83 | -8.615850e-47 |
| Msa0281530 | Msa0373410 | 0.802384 | 5.756618e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373410 | MtrunA17_Chr3g0122711 | 100.000 | 49 | 0 | 0 | 1 | 49 | 1 | 49 | 2.50e-30 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373410 | AT5G20165.1 | 87.755 | 49 | 6 | 0 | 1 | 49 | 1 | 49 | 1.81e-26 | 93.2 |
| Msa0373410 | AT5G20165.2 | 85.714 | 49 | 7 | 0 | 1 | 49 | 1 | 49 | 3.17e-26 | 92.4 |
| Msa0373410 | AT5G20165.4 | 85.714 | 49 | 7 | 0 | 1 | 49 | 1 | 49 | 3.17e-26 | 92.4 |
| Msa0373410 | AT5G20165.3 | 57.534 | 73 | 8 | 1 | 1 | 50 | 1 | 73 | 8.03e-21 | 79.7 |
Find 33 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTAAGTAATGGAGTTTC+AGG | 0.223099 | 3_1:+72405125 | None:intergenic |
| AATAATTGGTTAACCAGATT+TGG | 0.226536 | 3_1:+72405084 | None:intergenic |
| ATTTCTTACCGTGATACTTT+TGG | 0.252819 | 3_1:-72407597 | Msa0373410:CDS |
| AAAGTTATAAAGAGAATAAT+TGG | 0.254171 | 3_1:+72405070 | None:intergenic |
| ACAGATTTCGCGGTTTCTTC+TGG | 0.260290 | 3_1:-72406728 | Msa0373410:intron |
| CTTTACCATGCTTTATTTGA+AGG | 0.319198 | 3_1:-72404953 | Msa0373410:three_prime_UTR |
| ACGGTTACTCCTCTCGATTC+AGG | 0.334771 | 3_1:-72408226 | Msa0373410:intron |
| ATAATTGGTTAACCAGATTT+GGG | 0.349037 | 3_1:+72405085 | None:intergenic |
| ATTCTAAGAACACGTTAAAA+TGG | 0.352910 | 3_1:-72407870 | Msa0373410:intron |
| GAAAAGTGATTCTTCCTTCC+GGG | 0.360403 | 3_1:-72408293 | Msa0373410:five_prime_UTR |
| CGAAAAGTGATTCTTCCTTC+CGG | 0.360595 | 3_1:-72408294 | Msa0373410:five_prime_UTR |
| TCAGTATAGCAGCCCAAATC+TGG | 0.373284 | 3_1:-72405097 | Msa0373410:exon |
| AGTTTGCTTGCCCTTTCCTT+AGG | 0.375007 | 3_1:-72405005 | Msa0373410:three_prime_UTR |
| GCAATCCTTGAGCAGAGAAC+TGG | 0.378392 | 3_1:-72407536 | Msa0373410:CDS |
| GTTCTCTGCTCAAGGATTGC+TGG | 0.379427 | 3_1:+72407539 | None:intergenic |
| AATACAATTGCATACTGAAA+AGG | 0.474076 | 3_1:+72405033 | None:intergenic |
| TTCTGGAAGGCGGCAAGAAT+AGG | 0.480907 | 3_1:-72406711 | Msa0373410:intron |
| ATCAACTAATTCCTAAGGAA+AGG | 0.490706 | 3_1:+72404994 | None:intergenic |
| TTTACCCAGTTCTCTGCTCA+AGG | 0.503479 | 3_1:+72407531 | None:intergenic |
| CTGAAAAGAAAGCTAAGTAA+TGG | 0.504547 | 3_1:+72405116 | None:intergenic |
| TCAACTAATTCCTAAGGAAA+GGG | 0.518094 | 3_1:+72404995 | None:intergenic |
| TGTACCTAAAATTATTCCAT+CGG | 0.529936 | 3_1:-72405150 | Msa0373410:CDS |
| GTATCACGGTAAGAAATGAA+TGG | 0.533132 | 3_1:+72407603 | None:intergenic |
| ATTTCGCGGTTTCTTCTGGA+AGG | 0.552138 | 3_1:-72406724 | Msa0373410:CDS |
| TTCACGCTCACTGGGATCAA+CGG | 0.552737 | 3_1:-72408245 | Msa0373410:five_prime_UTR |
| AAAAGATTGAAGAAGAAGAG+TGG | 0.558833 | 3_1:-72407896 | Msa0373410:five_prime_UTR |
| CAATCCTTGAGCAGAGAACT+GGG | 0.569211 | 3_1:-72407535 | Msa0373410:intron |
| AATGGAGTTTCAGGCTCCGA+TGG | 0.570316 | 3_1:+72405134 | None:intergenic |
| TTGCATCTTGAAGAAAGTGC+AGG | 0.584838 | 3_1:+72407565 | None:intergenic |
| CTCAAACACTCTAGAGACAA+AGG | 0.595850 | 3_1:-72408343 | Msa0373410:five_prime_UTR |
| TCGCGGTTTCTTCTGGAAGG+CGG | 0.603957 | 3_1:-72406721 | Msa0373410:CDS |
| GAATTCCTTCAAATAAAGCA+TGG | 0.623706 | 3_1:+72404948 | None:intergenic |
| ACATATTCCCAAAAGTATCA+CGG | 0.645312 | 3_1:+72407589 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATAATGGTTTTTAA+GGG | + | chr3_1:72406236-72406255 | None:intergenic | 10.0% |
| !!! | TAATAAAATAATGGTTTTTA+AGG | + | chr3_1:72406237-72406256 | None:intergenic | 10.0% |
| !! | CGTAAAAACTAATAAAATAA+TGG | + | chr3_1:72406246-72406265 | None:intergenic | 15.0% |
| !!! | TTTATAAATTTTATCTTTGC+AGG | - | chr3_1:72408017-72408036 | Msa0373410:intron | 15.0% |
| !!! | TTATAAATTTTATCTTTGCA+GGG | - | chr3_1:72408018-72408037 | Msa0373410:intron | 15.0% |
| !! | AAAGTTATAAAGAGAATAAT+TGG | + | chr3_1:72408215-72408234 | None:intergenic | 15.0% |
| !! | AACAATTACAGAAGATATTA+AGG | - | chr3_1:72405173-72405192 | Msa0373410:CDS | 20.0% |
| !! | AATTGAGATTAATCGTAAAA+AGG | + | chr3_1:72405245-72405264 | None:intergenic | 20.0% |
| !!! | AGTTTTTGTGAAAGAAATTA+TGG | - | chr3_1:72405539-72405558 | Msa0373410:intron | 20.0% |
| !!! | AAATGCTTTTGACATTTTTT+TGG | - | chr3_1:72405626-72405645 | Msa0373410:intron | 20.0% |
| !!! | AAGAGATCATTTTTAAATGA+AGG | + | chr3_1:72406414-72406433 | None:intergenic | 20.0% |
| !! | TAGACATAAAATGATAATTG+AGG | + | chr3_1:72406625-72406644 | None:intergenic | 20.0% |
| !!! | TTGTGTTTTTATTCAAACTT+TGG | - | chr3_1:72406671-72406690 | Msa0373410:intron | 20.0% |
| !! | AAAGCTAAATAAAACTTCAA+GGG | + | chr3_1:72406754-72406773 | None:intergenic | 20.0% |
| !!! | TATGGTTTTTTGAGTTAATT+TGG | - | chr3_1:72406832-72406851 | Msa0373410:intron | 20.0% |
| !!! | ATGGTTTTTTGAGTTAATTT+GGG | - | chr3_1:72406833-72406852 | Msa0373410:intron | 20.0% |
| !! | TTACTAGTATGATTAGATAA+AGG | + | chr3_1:72407266-72407285 | None:intergenic | 20.0% |
| !! | GATTCTATTATTGAACAAAT+TGG | + | chr3_1:72407529-72407548 | None:intergenic | 20.0% |
| !! | TTAAAGGAAATTGAAGTTAA+TGG | + | chr3_1:72407658-72407677 | None:intergenic | 20.0% |
| !!! | AATTAGCTTATTCTACTTAT+GGG | + | chr3_1:72407914-72407933 | None:intergenic | 20.0% |
| !!! | AAATTAGCTTATTCTACTTA+TGG | + | chr3_1:72407915-72407934 | None:intergenic | 20.0% |
| !!! | TATAAATTTTATCTTTGCAG+GGG | - | chr3_1:72408019-72408038 | Msa0373410:intron | 20.0% |
| !! | AAAAAATCAACTAATTCCTA+AGG | + | chr3_1:72408296-72408315 | None:intergenic | 20.0% |
| ! | TAGATCTACACATAAAATGA+CGG | + | chr3_1:72405100-72405119 | None:intergenic | 25.0% |
| !! | ATTTTCTGTCATGATTTTCT+AGG | - | chr3_1:72405204-72405223 | Msa0373410:CDS | 25.0% |
| ! | ACGAAAAAGTTTGAAGATAA+TGG | + | chr3_1:72405280-72405299 | None:intergenic | 25.0% |
| !! | ATTCTAAGAACACGTTAAAA+TGG | - | chr3_1:72405412-72405431 | Msa0373410:intron | 25.0% |
| !! | TTTTGTGAAAGAAATTATGG+TGG | - | chr3_1:72405542-72405561 | Msa0373410:intron | 25.0% |
| ! | AAGACATAAGAATTAGTACA+TGG | + | chr3_1:72405801-72405820 | None:intergenic | 25.0% |
| ! | GTACTAATTCTTATGTCTTA+TGG | - | chr3_1:72405802-72405821 | Msa0373410:intron | 25.0% |
| !!! | TATTGGTTTAAGATACACTA+AGG | + | chr3_1:72405834-72405853 | None:intergenic | 25.0% |
| !! | TTTAAGTTCTCTCAAAATTG+AGG | - | chr3_1:72406272-72406291 | Msa0373410:intron | 25.0% |
| !!! | ATTTTAAAGATCCATGCAAA+GGG | - | chr3_1:72406295-72406314 | Msa0373410:intron | 25.0% |
| ! | TATTATCAAACACTTGCAAA+AGG | + | chr3_1:72406372-72406391 | None:intergenic | 25.0% |
| ! | AGTGCAGAATAAATATCTAA+TGG | + | chr3_1:72406462-72406481 | None:intergenic | 25.0% |
| ! | AGATATTTATTCTGCACTAT+TGG | - | chr3_1:72406464-72406483 | Msa0373410:intron | 25.0% |
| !! | ATTGGTTTCATTCTTCATAA+TGG | - | chr3_1:72406482-72406501 | Msa0373410:intron | 25.0% |
| ! | GAAAGCTAAATAAAACTTCA+AGG | + | chr3_1:72406755-72406774 | None:intergenic | 25.0% |
| ! | ACCATAATCATAAGTCATTA+AGG | + | chr3_1:72406818-72406837 | None:intergenic | 25.0% |
| ! | AGAGAAAAAATATTCATGTG+TGG | - | chr3_1:72407084-72407103 | Msa0373410:intron | 25.0% |
| ! | AAAAGTTTGTGAACCATATA+TGG | - | chr3_1:72407352-72407371 | Msa0373410:intron | 25.0% |
| ! | AAAGTTTGTGAACCATATAT+GGG | - | chr3_1:72407353-72407372 | Msa0373410:intron | 25.0% |
| ! | ATCAAATAAACATCCATTTG+GGG | + | chr3_1:72407619-72407638 | None:intergenic | 25.0% |
| ! | CATCAAATAAACATCCATTT+GGG | + | chr3_1:72407620-72407639 | None:intergenic | 25.0% |
| ! | GATGTTTATTTGATGCTTAT+GGG | - | chr3_1:72407625-72407644 | Msa0373410:intron | 25.0% |
| ! | TTAAAAGAGTAAAGCCTTTA+AGG | + | chr3_1:72407810-72407829 | None:intergenic | 25.0% |
| ! | AAGTAGAATAAGCTAATTTG+AGG | - | chr3_1:72407916-72407935 | Msa0373410:intron | 25.0% |
| !! | ATAAATTTTATCTTTGCAGG+GGG | - | chr3_1:72408020-72408039 | Msa0373410:intron | 25.0% |
| ! | TGTACCTAAAATTATTCCAT+CGG | - | chr3_1:72408132-72408151 | Msa0373410:intron | 25.0% |
| ! | ATAATTGGTTAACCAGATTT+GGG | + | chr3_1:72408200-72408219 | None:intergenic | 25.0% |
| ! | AATAATTGGTTAACCAGATT+TGG | + | chr3_1:72408201-72408220 | None:intergenic | 25.0% |
| ! | AATACAATTGCATACTGAAA+AGG | + | chr3_1:72408252-72408271 | None:intergenic | 25.0% |
| !!! | AATCGTTGTTGTTATTTTCC+CGG | + | chr3_1:72405010-72405029 | None:intergenic | 30.0% |
| AAAAAATTACCTGAATCGAG+AGG | + | chr3_1:72405068-72405087 | None:intergenic | 30.0% | |
| TGTAGATCTATTCTTAATCC+AGG | - | chr3_1:72405110-72405129 | Msa0373410:exon | 30.0% | |
| TAATTCCAGTAATCAATGAG+TGG | + | chr3_1:72405306-72405325 | None:intergenic | 30.0% | |
| AAAAGATTGAAGAAGAAGAG+TGG | - | chr3_1:72405386-72405405 | Msa0373410:intron | 30.0% | |
| ACTGTAAATTCTCTTCACTT+TGG | - | chr3_1:72405442-72405461 | Msa0373410:intron | 30.0% | |
| TTCACTTTGGTATTTGTGTT+TGG | - | chr3_1:72405455-72405474 | Msa0373410:intron | 30.0% | |
| TTGGAGCTTCAACAAAATTA+TGG | + | chr3_1:72405514-72405533 | None:intergenic | 30.0% | |
| CTTTCACAAAAACTACACTT+TGG | + | chr3_1:72405533-72405552 | None:intergenic | 30.0% | |
| ! | ATTTCTTACCGTGATACTTT+TGG | - | chr3_1:72405685-72405704 | Msa0373410:intron | 30.0% |
| ! | TTTCTTACCGTGATACTTTT+GGG | - | chr3_1:72405686-72405705 | Msa0373410:intron | 30.0% |
| !! | ACATATTCCCAAAAGTATCA+CGG | + | chr3_1:72405696-72405715 | None:intergenic | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+CGG | - | chr3_1:72405934-72405953 | Msa0373410:intron | 30.0% |
| TTCTTTCTCTCTCTTCTTAT+TGG | + | chr3_1:72406103-72406122 | None:intergenic | 30.0% | |
| AGAAAGAAAGTTGTCACAAA+TGG | - | chr3_1:72406115-72406134 | Msa0373410:intron | 30.0% | |
| !! | GATTTTAAAGATCCATGCAA+AGG | - | chr3_1:72406294-72406313 | Msa0373410:intron | 30.0% |
| ! | TTCAAACTTTGGAAAGAGAT+TGG | - | chr3_1:72406682-72406701 | Msa0373410:intron | 30.0% |
| GCCTTAATGACTTATGATTA+TGG | - | chr3_1:72406814-72406833 | Msa0373410:intron | 30.0% | |
| AATGACATTCAAGAACTACA+AGG | + | chr3_1:72406948-72406967 | None:intergenic | 30.0% | |
| CAATGACAATCTATTTCACA+AGG | + | chr3_1:72407007-72407026 | None:intergenic | 30.0% | |
| TGTAAATAACCATACAAGCA+CGG | + | chr3_1:72407134-72407153 | None:intergenic | 30.0% | |
| ACAACTTACTATTGAGTAGA+CGG | + | chr3_1:72407237-72407256 | None:intergenic | 30.0% | |
| AAATTCATGCATACATCACT+TGG | + | chr3_1:72407436-72407455 | None:intergenic | 30.0% | |
| TGCACTTTATAACTCTGATA+TGG | - | chr3_1:72407487-72407506 | Msa0373410:intron | 30.0% | |
| GCACTTTATAACTCTGATAT+GGG | - | chr3_1:72407488-72407507 | Msa0373410:intron | 30.0% | |
| ATATTGTGATATCAGCACAA+AGG | - | chr3_1:72407590-72407609 | Msa0373410:CDS | 30.0% | |
| GCATCAAATAAACATCCATT+TGG | + | chr3_1:72407621-72407640 | None:intergenic | 30.0% | |
| GGATGTTTATTTGATGCTTA+TGG | - | chr3_1:72407624-72407643 | Msa0373410:intron | 30.0% | |
| CTGAAAAGAAAGCTAAGTAA+TGG | + | chr3_1:72408169-72408188 | None:intergenic | 30.0% | |
| TCAACTAATTCCTAAGGAAA+GGG | + | chr3_1:72408290-72408309 | None:intergenic | 30.0% | |
| ATCAACTAATTCCTAAGGAA+AGG | + | chr3_1:72408291-72408310 | None:intergenic | 30.0% | |
| !! | CTTTACCATGCTTTATTTGA+AGG | - | chr3_1:72408329-72408348 | Msa0373410:five_prime_UTR | 30.0% |
| GAATTCCTTCAAATAAAGCA+TGG | + | chr3_1:72408337-72408356 | None:intergenic | 30.0% | |
| ! | TTCTAATTTTTCACGCTCAC+TGG | - | chr3_1:72405028-72405047 | Msa0373410:three_prime_UTR | 35.0% |
| ! | TCTAATTTTTCACGCTCACT+GGG | - | chr3_1:72405029-72405048 | Msa0373410:three_prime_UTR | 35.0% |
| !! | ACATAAAATGACGGATGAGA+AGG | + | chr3_1:72405091-72405110 | None:intergenic | 35.0% |
| GGAATTATTGCATCTTGTTC+TGG | - | chr3_1:72405319-72405338 | Msa0373410:intron | 35.0% | |
| CATGCAATTAGCAATCACAT+TGG | + | chr3_1:72405354-72405373 | None:intergenic | 35.0% | |
| AAGAACACGTTAAAATGGTG+AGG | - | chr3_1:72405417-72405436 | Msa0373410:intron | 35.0% | |
| GTATCACGGTAAGAAATGAA+TGG | + | chr3_1:72405682-72405701 | None:intergenic | 35.0% | |
| ! | TAGCTGCTATTTGACAGTAT+TGG | + | chr3_1:72405851-72405870 | None:intergenic | 35.0% |
| !! | ACAACGAGTTGTTTTCAACA+TGG | - | chr3_1:72406177-72406196 | Msa0373410:intron | 35.0% |
| !! | CAACGAGTTGTTTTCAACAT+GGG | - | chr3_1:72406178-72406197 | Msa0373410:intron | 35.0% |
| ! | TCAACATGGGTTAAAGATAG+TGG | - | chr3_1:72406191-72406210 | Msa0373410:intron | 35.0% |
| AAACACTTGCAAAAGGAATC+AGG | + | chr3_1:72406365-72406384 | None:intergenic | 35.0% | |
| AGAGATTGGAGTGGAAAATA+AGG | - | chr3_1:72406696-72406715 | Msa0373410:intron | 35.0% | |
| GAGATTGGAGTGGAAAATAA+GGG | - | chr3_1:72406697-72406716 | Msa0373410:intron | 35.0% | |
| AGATTGGAGTGGAAAATAAG+GGG | - | chr3_1:72406698-72406717 | Msa0373410:intron | 35.0% | |
| ATAAAACTTCAAGGGTAACC+TGG | + | chr3_1:72406746-72406765 | None:intergenic | 35.0% | |
| ! | TTTTATGCCCTTTATCCATG+TGG | - | chr3_1:72406786-72406805 | Msa0373410:intron | 35.0% |
| GTCAAGATAATATCTCTGAC+TGG | + | chr3_1:72407112-72407131 | None:intergenic | 35.0% | |
| GCTTGTATGGTTATTTACAC+AGG | - | chr3_1:72407135-72407154 | Msa0373410:intron | 35.0% | |
| TCACTTGGATGATCAAGTAA+CGG | + | chr3_1:72407421-72407440 | None:intergenic | 35.0% | |
| !! | TCAATATAGAAGGGCATTCA+TGG | + | chr3_1:72407710-72407729 | None:intergenic | 35.0% |
| CACGAGTCTTCAATATAGAA+GGG | + | chr3_1:72407719-72407738 | None:intergenic | 35.0% | |
| TGTTGTAGAAATTCCTATCC+TGG | - | chr3_1:72407767-72407786 | Msa0373410:intron | 35.0% | |
| TCTCTTCTTCCATACCTTAA+AGG | - | chr3_1:72407793-72407812 | Msa0373410:intron | 35.0% | |
| !! | AGAGTAAAGCCTTTAAGGTA+TGG | + | chr3_1:72407805-72407824 | None:intergenic | 35.0% |
| CCATGAATGACAATTCAGAA+CGG | + | chr3_1:72407834-72407853 | None:intergenic | 35.0% | |
| CATTCATGGTAGCATTAATC+CGG | - | chr3_1:72407845-72407864 | Msa0373410:intron | 35.0% | |
| TCTTGTTAGCAACTAGCAAA+AGG | - | chr3_1:72407884-72407903 | Msa0373410:five_prime_UTR | 35.0% | |
| GTAGTATAACAAGTTCCACA+CGG | - | chr3_1:72407975-72407994 | Msa0373410:intron | 35.0% | |
| !! | CTACAGTTTTGTATGCTACA+TGG | - | chr3_1:72408084-72408103 | Msa0373410:intron | 35.0% |
| ! | AAGCTAAGTAATGGAGTTTC+AGG | + | chr3_1:72408160-72408179 | None:intergenic | 35.0% |
| ! | CTCAAACACTCTAGAGACAA+AGG | - | chr3_1:72404939-72404958 | Msa0373410:three_prime_UTR | 40.0% |
| !! | AGGAAGAATCACTTTTCGGT+TGG | + | chr3_1:72404986-72405005 | None:intergenic | 40.0% |
| !! | CGGAAGGAAGAATCACTTTT+CGG | + | chr3_1:72404990-72405009 | None:intergenic | 40.0% |
| CGAAAAGTGATTCTTCCTTC+CGG | - | chr3_1:72404988-72405007 | Msa0373410:three_prime_UTR | 40.0% | |
| GAAAAGTGATTCTTCCTTCC+GGG | - | chr3_1:72404989-72405008 | Msa0373410:three_prime_UTR | 40.0% | |
| !!! | GTTGTTGTTATTTTCCCGGA+AGG | + | chr3_1:72405006-72405025 | None:intergenic | 40.0% |
| ATGCGAAAATCGATGAAACC+TGG | + | chr3_1:72405131-72405150 | None:intergenic | 40.0% | |
| TTGCGTGTTTGACAAAACCA+CGG | - | chr3_1:72405483-72405502 | Msa0373410:intron | 40.0% | |
| ! | TTGCATCTTGAAGAAAGTGC+AGG | + | chr3_1:72405720-72405739 | None:intergenic | 40.0% |
| GTACATGGAAAGAGATGTAG+AGG | + | chr3_1:72405786-72405805 | None:intergenic | 40.0% | |
| CTGTCAAATAGCAGCTATAG+TGG | - | chr3_1:72405854-72405873 | Msa0373410:intron | 40.0% | |
| CGTGTATTGCAAAACACTAG+CGG | + | chr3_1:72405908-72405927 | None:intergenic | 40.0% | |
| ! | TGATTTTCTCTCCCTTTGCA+TGG | + | chr3_1:72406309-72406328 | None:intergenic | 40.0% |
| AAAAGGAATCAGGAAGGTTG+CGG | + | chr3_1:72406355-72406374 | None:intergenic | 40.0% | |
| ACTTGCAAAAGGAATCAGGA+AGG | + | chr3_1:72406361-72406380 | None:intergenic | 40.0% | |
| ! | TGTTTTCCTGACAGATTTCG+CGG | - | chr3_1:72406544-72406563 | Msa0373410:intron | 40.0% |
| GAGGCAGTAGCAAATCAAAT+AGG | + | chr3_1:72406606-72406625 | None:intergenic | 40.0% | |
| ! | ACTTTGGAAAGAGATTGGAG+TGG | - | chr3_1:72406687-72406706 | Msa0373410:intron | 40.0% |
| AGTGGAAAATAAGGGGTGAA+AGG | - | chr3_1:72406705-72406724 | Msa0373410:intron | 40.0% | |
| GGTGAAAGGAGTCATAGTTT+GGG | - | chr3_1:72406719-72406738 | Msa0373410:CDS | 40.0% | |
| GCATCAACCACATGGATAAA+GGG | + | chr3_1:72406796-72406815 | None:intergenic | 40.0% | |
| ! | TCATTAAGGCATCAACCACA+TGG | + | chr3_1:72406804-72406823 | None:intergenic | 40.0% |
| TTATCTTGACCGTGCTTGTA+TGG | - | chr3_1:72407122-72407141 | Msa0373410:intron | 40.0% | |
| ! | AGCTATGGGTTGTTTCATGA+TGG | - | chr3_1:72407179-72407198 | Msa0373410:intron | 40.0% |
| ! | GCTATGGGTTGTTTCATGAT+GGG | - | chr3_1:72407180-72407199 | Msa0373410:intron | 40.0% |
| TTGTGAACCATATATGGGTG+TGG | - | chr3_1:72407358-72407377 | Msa0373410:intron | 40.0% | |
| ACCTTTCAATGGAGATCTGT+TGG | - | chr3_1:72407382-72407401 | Msa0373410:intron | 40.0% | |
| ACCAACAGATCTCCATTGAA+AGG | + | chr3_1:72407386-72407405 | None:intergenic | 40.0% | |
| CACTTGGATGATCAAGTAAC+GGG | + | chr3_1:72407420-72407439 | None:intergenic | 40.0% | |
| ! | TTCCTTTAAAGACTTCCTCC+AGG | - | chr3_1:72407669-72407688 | Msa0373410:intron | 40.0% |
| ! | TCCTTTAAAGACTTCCTCCA+GGG | - | chr3_1:72407670-72407689 | Msa0373410:intron | 40.0% |
| CCACGAGTCTTCAATATAGA+AGG | + | chr3_1:72407720-72407739 | None:intergenic | 40.0% | |
| CCTTCTATATTGAAGACTCG+TGG | - | chr3_1:72407717-72407736 | Msa0373410:intron | 40.0% | |
| AAAAACAGAGAGAGAGAGAG+AGG | + | chr3_1:72407743-72407762 | None:intergenic | 40.0% | |
| GAAGAAGAGAAAACCAGGAT+AGG | + | chr3_1:72407783-72407802 | None:intergenic | 40.0% | |
| GTATGGAAGAAGAGAAAACC+AGG | + | chr3_1:72407788-72407807 | None:intergenic | 40.0% | |
| ! | CCGTTCTGAATTGTCATTCA+TGG | - | chr3_1:72407831-72407850 | Msa0373410:intron | 40.0% |
| ATGGTAGCATTAATCCGGAA+CGG | - | chr3_1:72407850-72407869 | Msa0373410:intron | 40.0% | |
| !! | TAGTGTTGATTATCACCGTG+TGG | + | chr3_1:72407993-72408012 | None:intergenic | 40.0% |
| ! | GGCTCCGATGGAATAATTTT+AGG | + | chr3_1:72408139-72408158 | None:intergenic | 40.0% |
| ! | GTGTGCCACTCATTGATTAC+TGG | - | chr3_1:72405298-72405317 | Msa0373410:intron | 45.0% |
| !! | ACAAAATTATGGTGCCACCG+TGG | + | chr3_1:72405503-72405522 | None:intergenic | 45.0% |
| CAATCCTTGAGCAGAGAACT+GGG | - | chr3_1:72405747-72405766 | Msa0373410:intron | 45.0% | |
| TTTACCCAGTTCTCTGCTCA+AGG | + | chr3_1:72405754-72405773 | None:intergenic | 45.0% | |
| !! | AGCAGCTATAGTGGTGCTAT+AGG | - | chr3_1:72405863-72405882 | Msa0373410:intron | 45.0% |
| !! | GCAGCTATAGTGGTGCTATA+GGG | - | chr3_1:72405864-72405883 | Msa0373410:intron | 45.0% |
| !! | ATAGTGGTGCTATAGGGTAG+CGG | - | chr3_1:72405870-72405889 | Msa0373410:intron | 45.0% |
| !! | GGGTTAAAGATAGTGGATGC+AGG | - | chr3_1:72406198-72406217 | Msa0373410:intron | 45.0% |
| AAAGGAATCAGGAAGGTTGC+GGG | + | chr3_1:72406354-72406373 | None:intergenic | 45.0% | |
| AAGAAACCGCGAAATCTGTC+AGG | + | chr3_1:72406553-72406572 | None:intergenic | 45.0% | |
| ACAGATTTCGCGGTTTCTTC+TGG | - | chr3_1:72406554-72406573 | Msa0373410:intron | 45.0% | |
| ATTTCGCGGTTTCTTCTGGA+AGG | - | chr3_1:72406558-72406577 | Msa0373410:intron | 45.0% | |
| GGGTGAAAGGAGTCATAGTT+TGG | - | chr3_1:72406718-72406737 | Msa0373410:CDS | 45.0% | |
| GGCATCAACCACATGGATAA+AGG | + | chr3_1:72406797-72406816 | None:intergenic | 45.0% | |
| TTAATGACCCACACCCCTAT+TGG | - | chr3_1:72406882-72406901 | Msa0373410:intron | 45.0% | |
| TCGCAAACAACCTGCCAATA+GGG | + | chr3_1:72406899-72406918 | None:intergenic | 45.0% | |
| ! | TTGTTTGCGACATCGGTTAC+TGG | - | chr3_1:72406909-72406928 | Msa0373410:intron | 45.0% |
| TTTAAGTCCGTGGGTAGCTA+TGG | - | chr3_1:72407164-72407183 | Msa0373410:intron | 45.0% | |
| TTAAGTCCGTGGGTAGCTAT+GGG | - | chr3_1:72407165-72407184 | Msa0373410:intron | 45.0% | |
| AAACAACCCATAGCTACCCA+CGG | + | chr3_1:72407174-72407193 | None:intergenic | 45.0% | |
| !! | AAAGGTGCCACACCCATATA+TGG | + | chr3_1:72407368-72407387 | None:intergenic | 45.0% |
| TCCCTGGAGGAAGTCTTTAA+AGG | + | chr3_1:72407674-72407693 | None:intergenic | 45.0% | |
| TGGTAGCATTAATCCGGAAC+GGG | - | chr3_1:72407851-72407870 | Msa0373410:intron | 45.0% | |
| TCAGTATAGCAGCCCAAATC+TGG | - | chr3_1:72408185-72408204 | Msa0373410:intron | 45.0% | |
| ! | AGTTTGCTTGCCCTTTCCTT+AGG | - | chr3_1:72408277-72408296 | Msa0373410:five_prime_UTR | 45.0% |
| !!! | TTGATTTTTTTTTTTTTTAA+AGG | + | chr3_1:72404903-72404922 | None:intergenic | 5.0% |
| !!! | CTTTTTTTATATATATTTTA+TGG | + | chr3_1:72407337-72407356 | None:intergenic | 5.0% |
| TTCACGCTCACTGGGATCAA+CGG | - | chr3_1:72405037-72405056 | Msa0373410:three_prime_UTR | 50.0% | |
| ACGGTTACTCCTCTCGATTC+AGG | - | chr3_1:72405056-72405075 | Msa0373410:three_prime_UTR | 50.0% | |
| CGTGTTTGACAAAACCACGG+TGG | - | chr3_1:72405486-72405505 | Msa0373410:intron | 50.0% | |
| GTTCTCTGCTCAAGGATTGC+TGG | + | chr3_1:72405746-72405765 | None:intergenic | 50.0% | |
| GCAATCCTTGAGCAGAGAAC+TGG | - | chr3_1:72405746-72405765 | Msa0373410:intron | 50.0% | |
| AATCAGGAAGGTTGCGGGAA+AGG | + | chr3_1:72406349-72406368 | None:intergenic | 50.0% | |
| ! | TTCTGGAAGGCGGCAAGAAT+AGG | - | chr3_1:72406571-72406590 | Msa0373410:intron | 50.0% |
| AGGAGTCATAGTTTGGGTCC+AGG | - | chr3_1:72406725-72406744 | Msa0373410:CDS | 50.0% | |
| CGCAAACAACCTGCCAATAG+GGG | + | chr3_1:72406898-72406917 | None:intergenic | 50.0% | |
| GTCGCAAACAACCTGCCAAT+AGG | + | chr3_1:72406900-72406919 | None:intergenic | 50.0% | |
| TGGCAGGTTGTTTGCGACAT+CGG | - | chr3_1:72406902-72406921 | Msa0373410:intron | 50.0% | |
| TTAGTGCTGCACCAGCATGT+TGG | - | chr3_1:72406977-72406996 | Msa0373410:intron | 50.0% | |
| TAGTGCTGCACCAGCATGTT+GGG | - | chr3_1:72406978-72406997 | Msa0373410:intron | 50.0% | |
| CACAAGGAATCCCAACATGC+TGG | + | chr3_1:72406991-72407010 | None:intergenic | 50.0% | |
| AGGTGAGCGTTTAAGTCCGT+GGG | - | chr3_1:72407155-72407174 | Msa0373410:intron | 50.0% | |
| ATGGGTGTGGCACCTTTCAA+TGG | - | chr3_1:72407371-72407390 | Msa0373410:intron | 50.0% | |
| AGCACAAAGGTAGCCCCAAA+TGG | - | chr3_1:72407603-72407622 | Msa0373410:CDS | 50.0% | |
| AAAGACTTCCTCCAGGGAAG+TGG | - | chr3_1:72407676-72407695 | Msa0373410:intron | 50.0% | |
| GGTAGCATTAATCCGGAACG+GGG | - | chr3_1:72407852-72407871 | Msa0373410:intron | 50.0% | |
| ATTAATCCGGAACGGGGTGT+TGG | - | chr3_1:72407858-72407877 | Msa0373410:intron | 50.0% | |
| AGATATCCAACACCCCGTTC+CGG | + | chr3_1:72407867-72407886 | None:intergenic | 50.0% | |
| AATGGAGTTTCAGGCTCCGA+TGG | + | chr3_1:72408151-72408170 | None:intergenic | 50.0% | |
| GGTTGCGGGAAAGGAATGGA+GGG | + | chr3_1:72406340-72406359 | None:intergenic | 55.0% | |
| AGGTTGCGGGAAAGGAATGG+AGG | + | chr3_1:72406341-72406360 | None:intergenic | 55.0% | |
| GGAAGGTTGCGGGAAAGGAA+TGG | + | chr3_1:72406344-72406363 | None:intergenic | 55.0% | |
| ! | TCGCGGTTTCTTCTGGAAGG+CGG | - | chr3_1:72406561-72406580 | Msa0373410:intron | 55.0% |
| ! | CAACCTGCCAATAGGGGTGT+GGG | + | chr3_1:72406892-72406911 | None:intergenic | 55.0% |
| ACAACCTGCCAATAGGGGTG+TGG | + | chr3_1:72406893-72406912 | None:intergenic | 55.0% | |
| CAGGTGAGCGTTTAAGTCCG+TGG | - | chr3_1:72407154-72407173 | Msa0373410:intron | 55.0% | |
| TGAGCTATCCACTTCCCTGG+AGG | + | chr3_1:72407687-72407706 | None:intergenic | 55.0% | |
| TGGTGAGCTATCCACTTCCC+TGG | + | chr3_1:72407690-72407709 | None:intergenic | 55.0% | |
| TGACCCACACCCCTATTGGC+AGG | - | chr3_1:72406886-72406905 | Msa0373410:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 72404892 | 72408412 | 72404892 | ID=Msa0373410;Name=Msa0373410 |
| chr3_1 | mRNA | 72404892 | 72408412 | 72404892 | ID=Msa0373410-mRNA-1;Parent=Msa0373410;Name=Msa0373410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=235|0.75|1|1|0|0.2|5|219|99 |
| chr3_1 | exon | 72404892 | 72405265 | 72404892 | ID=Msa0373410-mRNA-1:exon:16220;Parent=Msa0373410-mRNA-1 |
| chr3_1 | exon | 72406712 | 72406746 | 72406712 | ID=Msa0373410-mRNA-1:exon:16219;Parent=Msa0373410-mRNA-1 |
| chr3_1 | exon | 72407536 | 72407642 | 72407536 | ID=Msa0373410-mRNA-1:exon:16218;Parent=Msa0373410-mRNA-1 |
| chr3_1 | exon | 72407871 | 72407922 | 72407871 | ID=Msa0373410-mRNA-1:exon:16217;Parent=Msa0373410-mRNA-1 |
| chr3_1 | exon | 72408227 | 72408412 | 72408227 | ID=Msa0373410-mRNA-1:exon:16216;Parent=Msa0373410-mRNA-1 |
| chr3_1 | five_prime_UTR | 72408227 | 72408412 | 72408227 | ID=Msa0373410-mRNA-1:five_prime_utr;Parent=Msa0373410-mRNA-1 |
| chr3_1 | five_prime_UTR | 72407874 | 72407922 | 72407874 | ID=Msa0373410-mRNA-1:five_prime_utr;Parent=Msa0373410-mRNA-1 |
| chr3_1 | CDS | 72407871 | 72407873 | 72407871 | ID=Msa0373410-mRNA-1:cds;Parent=Msa0373410-mRNA-1 |
| chr3_1 | CDS | 72407536 | 72407642 | 72407536 | ID=Msa0373410-mRNA-1:cds;Parent=Msa0373410-mRNA-1 |
| chr3_1 | CDS | 72406712 | 72406746 | 72406712 | ID=Msa0373410-mRNA-1:cds;Parent=Msa0373410-mRNA-1 |
| chr3_1 | CDS | 72405111 | 72405265 | 72405111 | ID=Msa0373410-mRNA-1:cds;Parent=Msa0373410-mRNA-1 |
| chr3_1 | three_prime_UTR | 72404892 | 72405110 | 72404892 | ID=Msa0373410-mRNA-1:three_prime_utr;Parent=Msa0373410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
