Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422440 | XP_003601257.1 | 97.561 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 3.19e-116 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422440 | sp|O49627|ISU1_ARATH | 80.392 | 153 | 28 | 2 | 5 | 156 | 7 | 158 | 9.69e-84 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422440 | B7FHC6 | 97.561 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 1.52e-116 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422440 | Msa0457560 | -0.809544 | 1.795842e-50 | -8.615850e-47 |
| Msa0422440 | Msa0513970 | -0.808414 | 3.133769e-50 | -8.615850e-47 |
| Msa0422440 | Msa1417380 | -0.815870 | 7.406737e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422440 | MtrunA17_Chr3g0117561 | 97.561 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 2.94e-120 | 336 |
| Msa0422440 | MtrunA17_Chr3g0117571 | 64.615 | 130 | 11 | 2 | 66 | 160 | 1 | 130 | 2.58e-45 | 145 |
| Msa0422440 | MtrunA17_Chr3g0117541 | 92.000 | 50 | 4 | 0 | 66 | 115 | 1 | 50 | 6.69e-26 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422440 | AT4G22220.1 | 80.392 | 153 | 28 | 2 | 5 | 156 | 7 | 158 | 9.85e-85 | 246 |
| Msa0422440 | AT4G04080.1 | 70.253 | 158 | 45 | 2 | 1 | 157 | 1 | 157 | 2.25e-79 | 233 |
| Msa0422440 | AT3G01020.1 | 72.662 | 139 | 38 | 0 | 26 | 164 | 25 | 163 | 4.02e-71 | 212 |
Find 61 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTACTTACGTGTTCTTAA+TGG | 0.261409 | 3_2:-71757714 | None:intergenic |
| TTGAGAAGAAGAAAATAAAT+AGG | 0.265843 | 3_2:-71757133 | None:intergenic |
| GCAGCTACTGAATGGGTAAA+AGG | 0.280013 | 3_2:+71757668 | Msa0422440:intron |
| TGCATGATTTCTTCCATTGC+TGG | 0.291911 | 3_2:+71759674 | Msa0422440:exon |
| GATGCTCGCTTTAAGACTTT+TGG | 0.312604 | 3_2:+71757446 | Msa0422440:CDS |
| ATGCTGCAGTGAAGCTTAAC+TGG | 0.354352 | 3_2:-71759561 | None:intergenic |
| AGACGCCAAATCCAGCGATT+AGG | 0.369036 | 3_2:+71757252 | Msa0422440:CDS |
| AGAATCCTAATCGCTGGATT+TGG | 0.371565 | 3_2:-71757257 | None:intergenic |
| AAACTATGACAAATACAATA+TGG | 0.374383 | 3_2:-71759862 | None:intergenic |
| TATCGAAGGATCCAACATTC+CGG | 0.389446 | 3_2:-71757325 | None:intergenic |
| CAAATCAAGGTTGATGAGAA+TGG | 0.396788 | 3_2:+71757413 | Msa0422440:CDS |
| GATGAAGTTTCTTGTTTGAA+TGG | 0.409246 | 3_2:+71759905 | Msa0422440:three_prime_UTR |
| ATCGAAGGATCCAACATTCC+GGG | 0.431036 | 3_2:-71757324 | None:intergenic |
| TATAAATACTTGTATCGGCT+TGG | 0.437369 | 3_2:+71759829 | Msa0422440:three_prime_UTR |
| TGCCTCGGCTACTGCGGCCA+CGG | 0.446467 | 3_2:+71759635 | Msa0422440:CDS |
| GGTTTCAAACAAAATCGTTA+AGG | 0.452051 | 3_2:-71760009 | None:intergenic |
| ATGGTGGGAACTGGTCTTGT+TGG | 0.461756 | 3_2:+71757359 | Msa0422440:CDS |
| AAATCAAGGTTGATGAGAAT+GGG | 0.463058 | 3_2:+71757414 | Msa0422440:CDS |
| CGCAAAGAAACTCGTGCAAA+CGG | 0.463462 | 3_2:+71757220 | Msa0422440:CDS |
| TGTTTGAATGGTTTGTTCGT+AGG | 0.472869 | 3_2:+71759917 | Msa0422440:three_prime_UTR |
| AATGATCCGATGGTGGGAAC+TGG | 0.473170 | 3_2:+71757350 | Msa0422440:CDS |
| TTTATAAATACTTGTATCGC+GGG | 0.492962 | 3_2:+71759883 | Msa0422440:three_prime_UTR |
| TACGACAATCCCCGGAATGT+TGG | 0.510499 | 3_2:+71757314 | Msa0422440:CDS |
| CGTCTTATAAATACTTGTAT+CGG | 0.511347 | 3_2:+71759824 | Msa0422440:three_prime_UTR |
| GCCTCGGCTACTGCGGCCAC+GGG | 0.517239 | 3_2:+71759636 | Msa0422440:CDS |
| TGTCATGAAGCTTCAAATCA+AGG | 0.528073 | 3_2:+71757400 | Msa0422440:CDS |
| CGTGGAAGAATCCTAATCGC+TGG | 0.531980 | 3_2:-71757263 | None:intergenic |
| ATGGGTAAAAGGAAAGCAAA+TGG | 0.536082 | 3_2:+71757679 | Msa0422440:CDS |
| TGCAGTGAAGCTTAACTGGC+GGG | 0.542392 | 3_2:-71759557 | None:intergenic |
| TCCCGTGGCCGCAGTAGCCG+AGG | 0.550070 | 3_2:-71759637 | None:intergenic |
| TTTCATCATCATTCCAGCAA+TGG | 0.552059 | 3_2:-71759687 | None:intergenic |
| AATCGACTCATTAGCACCAT+TGG | 0.564226 | 3_2:-71759730 | None:intergenic |
| CGATAAGAATGATCCGATGG+TGG | 0.569162 | 3_2:+71757343 | Msa0422440:CDS |
| GCTATTGCTTCATCGTCCGT+TGG | 0.572466 | 3_2:+71757479 | Msa0422440:CDS |
| TTTCATTTCCACCACAAACA+AGG | 0.572499 | 3_2:+71757175 | Msa0422440:five_prime_UTR |
| TTATGAAGCTAAGCGTGCCT+CGG | 0.575006 | 3_2:+71759620 | Msa0422440:CDS |
| TGGATCACTACGACAATCCC+CGG | 0.588923 | 3_2:+71757306 | Msa0422440:CDS |
| CTTCATGACATCACCACAAG+CGG | 0.590457 | 3_2:-71757387 | None:intergenic |
| ATTCTACCACGAGAGGGTGG+TGG | 0.593190 | 3_2:+71757286 | Msa0422440:CDS |
| TAAGCGTGCCTCGGCTACTG+CGG | 0.598393 | 3_2:+71759629 | Msa0422440:CDS |
| TTCATGACATCACCACAAGC+GGG | 0.602959 | 3_2:-71757386 | None:intergenic |
| AAAAGGAAAGCAAATGGAGG+AGG | 0.604892 | 3_2:+71757685 | Msa0422440:CDS |
| CATCGGATCATTCTTATCGA+AGG | 0.605249 | 3_2:-71757339 | None:intergenic |
| ACAAGACCAGTTCCCACCAT+CGG | 0.608536 | 3_2:-71757356 | None:intergenic |
| TCACTGCAGCATGCTTGCTG+AGG | 0.608636 | 3_2:+71759572 | Msa0422440:CDS |
| TCATTAGTATGATTCTCCAA+TGG | 0.611337 | 3_2:+71759714 | Msa0422440:three_prime_UTR |
| GATAAGAATGATCCGATGGT+GGG | 0.625202 | 3_2:+71757344 | Msa0422440:CDS |
| TCCACGATTCTACCACGAGA+GGG | 0.625238 | 3_2:+71757280 | Msa0422440:CDS |
| TCGAAGGATCCAACATTCCG+GGG | 0.626085 | 3_2:-71757323 | None:intergenic |
| AGTGGCAGATTTGTCTCCCG+TGG | 0.628353 | 3_2:-71759652 | None:intergenic |
| CTGCAGTGAAGCTTAACTGG+CGG | 0.631259 | 3_2:-71759558 | None:intergenic |
| ACCCTCTCGTGGTAGAATCG+TGG | 0.631852 | 3_2:-71757281 | None:intergenic |
| CTTCGATAAGAATGATCCGA+TGG | 0.633992 | 3_2:+71757340 | Msa0422440:CDS |
| CTTGTTGGTGCACCCGCTTG+TGG | 0.637545 | 3_2:+71757374 | Msa0422440:CDS |
| AGTGATCCACCACCCTCTCG+TGG | 0.652272 | 3_2:-71757292 | None:intergenic |
| TTCCACGATTCTACCACGAG+AGG | 0.658430 | 3_2:+71757279 | Msa0422440:CDS |
| CAATGGAAGAAATCATGCAG+TGG | 0.672265 | 3_2:-71759670 | None:intergenic |
| AACGGACGATGAAGCAATAG+CGG | 0.675366 | 3_2:-71757477 | None:intergenic |
| GGTAAAAGGAAAGCAAATGG+AGG | 0.675966 | 3_2:+71757682 | Msa0422440:CDS |
| ACGATTCTACCACGAGAGGG+TGG | 0.684824 | 3_2:+71757283 | Msa0422440:CDS |
| GACGTTATGACAATACAACA+TGG | 0.741521 | 3_2:-71759805 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGATTTTTTTTTTTTTTTTT+AGG | + | chr3_2:71757542-71757561 | Msa0422440:intron | 10.0% |
| !! | ATAATCAAATTCAATAAAAA+GGG | - | chr3_2:71757586-71757605 | None:intergenic | 10.0% |
| !! | AATAATCAAATTCAATAAAA+AGG | - | chr3_2:71757587-71757606 | None:intergenic | 10.0% |
| !!! | TAACAATTTTTCATATAAAA+TGG | - | chr3_2:71758129-71758148 | None:intergenic | 10.0% |
| !!! | TATTTTTATTTTTGCTTTGA+AGG | - | chr3_2:71757104-71757123 | None:intergenic | 15.0% |
| !!! | TGCTATTTAAAAAAATAGAA+GGG | - | chr3_2:71757996-71758015 | None:intergenic | 15.0% |
| !!! | GATAATAGAGATTTAAAATA+AGG | + | chr3_2:71758435-71758454 | Msa0422440:intron | 15.0% |
| !! | CCAAAATATAATAAAACTTA+GGG | - | chr3_2:71758708-71758727 | None:intergenic | 15.0% |
| !!! | CCTAAGTTTTATTATATTTT+GGG | + | chr3_2:71758706-71758725 | Msa0422440:intron | 15.0% |
| !! | TTGAGAAGAAGAAAATAAAT+AGG | - | chr3_2:71757136-71757155 | None:intergenic | 20.0% |
| !!! | TTCTGAGTTAATAAGTTTTA+GGG | + | chr3_2:71757923-71757942 | Msa0422440:intron | 20.0% |
| !! | GCTATTTAAAAAAATAGAAG+GGG | - | chr3_2:71757995-71758014 | None:intergenic | 20.0% |
| !!! | GTGCTATTTAAAAAAATAGA+AGG | - | chr3_2:71757997-71758016 | None:intergenic | 20.0% |
| !!! | GTTTCAGTAAATTAATTTGA+CGG | - | chr3_2:71758052-71758071 | None:intergenic | 20.0% |
| !! | TATTTCCAAATACATGATTT+GGG | + | chr3_2:71758179-71758198 | Msa0422440:intron | 20.0% |
| !! | AAATTAATAGCTTTCAACAA+TGG | + | chr3_2:71758464-71758483 | Msa0422440:intron | 20.0% |
| !!! | AGTTTTAACAGATCAATTAA+CGG | + | chr3_2:71758557-71758576 | Msa0422440:intron | 20.0% |
| !!! | TATCTATTTTAAGAGACTTT+AGG | + | chr3_2:71758603-71758622 | Msa0422440:intron | 20.0% |
| !!! | ATCTATTTTAAGAGACTTTA+GGG | + | chr3_2:71758604-71758623 | Msa0422440:intron | 20.0% |
| !! | ATTGTCTATTATAAAACTAG+AGG | + | chr3_2:71758633-71758652 | Msa0422440:intron | 20.0% |
| !! | TTGTCTATTATAAAACTAGA+GGG | + | chr3_2:71758634-71758653 | Msa0422440:intron | 20.0% |
| !!! | CCCTAAGTTTTATTATATTT+TGG | + | chr3_2:71758705-71758724 | Msa0422440:intron | 20.0% |
| !! | CCCAAAATATAATAAAACTT+AGG | - | chr3_2:71758709-71758728 | None:intergenic | 20.0% |
| !!! | TTGTTAACAATTTCCTTTTT+TGG | - | chr3_2:71758770-71758789 | None:intergenic | 20.0% |
| !!! | AAGATATTTTGTTGGTTTTA+TGG | + | chr3_2:71758904-71758923 | Msa0422440:intron | 20.0% |
| !! | AAACTATGACAAATACAATA+TGG | - | chr3_2:71759865-71759884 | None:intergenic | 20.0% |
| !!! | TTTTATAAATACTTGTATCG+CGG | + | chr3_2:71759882-71759901 | Msa0422440:three_prime_UTR | 20.0% |
| !!! | TTTTTTCTTTTCCTTGTTTG+TGG | - | chr3_2:71757189-71757208 | None:intergenic | 25.0% |
| !!! | TTCATGTATTGGTTTGTTAT+AGG | + | chr3_2:71757512-71757531 | Msa0422440:intron | 25.0% |
| !!! | GTTCTGAGTTAATAAGTTTT+AGG | + | chr3_2:71757922-71757941 | Msa0422440:intron | 25.0% |
| ! | ATTATTGTGAATCAGTTCAT+TGG | + | chr3_2:71758087-71758106 | Msa0422440:intron | 25.0% |
| ! | TTATTGTGAATCAGTTCATT+GGG | + | chr3_2:71758088-71758107 | Msa0422440:intron | 25.0% |
| ! | TCATATAAAATGGAATCCAA+AGG | - | chr3_2:71758119-71758138 | None:intergenic | 25.0% |
| ! | ATGTATTTGGAAATACGAAA+AGG | - | chr3_2:71758174-71758193 | None:intergenic | 25.0% |
| ! | GTATTTCCAAATACATGATT+TGG | + | chr3_2:71758178-71758197 | Msa0422440:intron | 25.0% |
| ! | GATAAATGCTCAATAAAAAG+AGG | + | chr3_2:71758303-71758322 | Msa0422440:intron | 25.0% |
| ! | CTCTATTATCATAATTCTCT+CGG | - | chr3_2:71758425-71758444 | None:intergenic | 25.0% |
| ! | ATTAACGGTATTAACTTAGA+AGG | + | chr3_2:71758572-71758591 | Msa0422440:intron | 25.0% |
| ! | TTAACGGTATTAACTTAGAA+GGG | + | chr3_2:71758573-71758592 | Msa0422440:intron | 25.0% |
| !!! | TCTATTTTAAGAGACTTTAG+GGG | + | chr3_2:71758605-71758624 | Msa0422440:intron | 25.0% |
| ! | TGTCTATTATAAAACTAGAG+GGG | + | chr3_2:71758635-71758654 | Msa0422440:intron | 25.0% |
| !!! | CTTTTTAAGCATACCAAAAA+AGG | + | chr3_2:71758754-71758773 | Msa0422440:intron | 25.0% |
| ! | ACATTTCTTCTTGAAATTGA+TGG | + | chr3_2:71758826-71758845 | Msa0422440:intron | 25.0% |
| !! | TGGTATATGAATTTTGTAGA+AGG | + | chr3_2:71758846-71758865 | Msa0422440:intron | 25.0% |
| !! | TATATGAATTTTGTAGAAGG+TGG | + | chr3_2:71758849-71758868 | Msa0422440:intron | 25.0% |
| !!! | TATTTTGTTGGTTTTATGGA+TGG | + | chr3_2:71758908-71758927 | Msa0422440:intron | 25.0% |
| !!! | ATTTTGTTGGTTTTATGGAT+GGG | + | chr3_2:71758909-71758928 | Msa0422440:intron | 25.0% |
| ! | ATAAACTCTTTATCCAAACA+GGG | - | chr3_2:71758950-71758969 | None:intergenic | 25.0% |
| ! | AATAAACTCTTTATCCAAAC+AGG | - | chr3_2:71758951-71758970 | None:intergenic | 25.0% |
| ! | AATAAGTGCTTATATGATCA+TGG | - | chr3_2:71758993-71759012 | None:intergenic | 25.0% |
| ! | TCAAATAAGTTAATCCAAAC+AGG | + | chr3_2:71759201-71759220 | Msa0422440:intron | 25.0% |
| ! | TCAACTTGTCATCATTAAAA+AGG | - | chr3_2:71759268-71759287 | None:intergenic | 25.0% |
| ! | AAAGAAAAAAAGAAACCAGA+AGG | - | chr3_2:71759339-71759358 | None:intergenic | 25.0% |
| ! | TTTGTTAATGCTTCTATGAT+TGG | + | chr3_2:71759458-71759477 | Msa0422440:intron | 25.0% |
| !! | TTATTCAGACTTTTCTTGAT+TGG | + | chr3_2:71759772-71759791 | Msa0422440:three_prime_UTR | 25.0% |
| ! | CGTCTTATAAATACTTGTAT+CGG | + | chr3_2:71759824-71759843 | Msa0422440:three_prime_UTR | 25.0% |
| ! | TTTATAAATACTTGTATCGC+GGG | + | chr3_2:71759883-71759902 | Msa0422440:three_prime_UTR | 25.0% |
| !! | AAATCAAGGTTGATGAGAAT+GGG | + | chr3_2:71757414-71757433 | Msa0422440:CDS | 30.0% |
| !! | TGGTTTGTTATAGGAAATTC+AGG | + | chr3_2:71757521-71757540 | Msa0422440:intron | 30.0% |
| ATATTGTTTGCACTTGTGAT+TGG | + | chr3_2:71757834-71757853 | Msa0422440:intron | 30.0% | |
| TATTGTTTGCACTTGTGATT+GGG | + | chr3_2:71757835-71757854 | Msa0422440:intron | 30.0% | |
| ATACATTTACGATAACCTCA+GGG | - | chr3_2:71757966-71757985 | None:intergenic | 30.0% | |
| ! | TAAAAAAATAGAAGGGGTGT+TGG | - | chr3_2:71757989-71758008 | None:intergenic | 30.0% |
| ! | TCAGTAAATTAATTTGACGG+AGG | - | chr3_2:71758049-71758068 | None:intergenic | 30.0% |
| TGGAAATACGAAAAGGAATT+GGG | - | chr3_2:71758167-71758186 | None:intergenic | 30.0% | |
| TTGGAAATACGAAAAGGAAT+TGG | - | chr3_2:71758168-71758187 | None:intergenic | 30.0% | |
| !! | TACAATGTGTTCATTTTAGC+TGG | - | chr3_2:71758221-71758240 | None:intergenic | 30.0% |
| TTGTTCTTTCTGTATGAACA+GGG | - | chr3_2:71758271-71758290 | None:intergenic | 30.0% | |
| TTTGTTCTTTCTGTATGAAC+AGG | - | chr3_2:71758272-71758291 | None:intergenic | 30.0% | |
| AGAAAGAACAAATACCTTGT+GGG | + | chr3_2:71758280-71758299 | Msa0422440:intron | 30.0% | |
| ! | ATCTGAAACATGAGAATAAG+AGG | + | chr3_2:71758363-71758382 | Msa0422440:intron | 30.0% |
| TTCAACAATGGCTGAAATAT+TGG | + | chr3_2:71758476-71758495 | Msa0422440:intron | 30.0% | |
| TCAACAATGGCTGAAATATT+GGG | + | chr3_2:71758477-71758496 | Msa0422440:intron | 30.0% | |
| ! | TTAAAGACAATTTTCACCCA+AGG | - | chr3_2:71758517-71758536 | None:intergenic | 30.0% |
| ! | TGTCATTTAAAGAGATCTCA+AGG | + | chr3_2:71758665-71758684 | Msa0422440:intron | 30.0% |
| GTCATTTAAAGAGATCTCAA+GGG | + | chr3_2:71758666-71758685 | Msa0422440:intron | 30.0% | |
| ! | GTAGAGCAAAGATATTTTGT+TGG | + | chr3_2:71758896-71758915 | Msa0422440:intron | 30.0% |
| !!! | TTTTGTTGGTTTTATGGATG+GGG | + | chr3_2:71758910-71758929 | Msa0422440:intron | 30.0% |
| !!! | TGCTGTTTTATAACCTATCA+TGG | + | chr3_2:71759076-71759095 | Msa0422440:intron | 30.0% |
| TTTCATAAGCTATCCATGAT+AGG | - | chr3_2:71759092-71759111 | None:intergenic | 30.0% | |
| AAACACTTGTGACACTATTT+GGG | - | chr3_2:71759165-71759184 | None:intergenic | 30.0% | |
| TAAACACTTGTGACACTATT+TGG | - | chr3_2:71759166-71759185 | None:intergenic | 30.0% | |
| AAATAGTGTCACAAGTGTTT+AGG | + | chr3_2:71759165-71759184 | Msa0422440:intron | 30.0% | |
| GCAAAAAAGAACAAAACCAA+GGG | - | chr3_2:71759227-71759246 | None:intergenic | 30.0% | |
| TGCAAAAAAGAACAAAACCA+AGG | - | chr3_2:71759228-71759247 | None:intergenic | 30.0% | |
| TAAGATTAAATCCTACAGAC+GGG | - | chr3_2:71759415-71759434 | None:intergenic | 30.0% | |
| GTAAGATTAAATCCTACAGA+CGG | - | chr3_2:71759416-71759435 | None:intergenic | 30.0% | |
| !!! | ATCTTTAACAGCTGCTTTTA+TGG | - | chr3_2:71759601-71759620 | None:intergenic | 30.0% |
| TCATTAGTATGATTCTCCAA+TGG | + | chr3_2:71759714-71759733 | Msa0422440:three_prime_UTR | 30.0% | |
| !! | TATAAATACTTGTATCGGCT+TGG | + | chr3_2:71759829-71759848 | Msa0422440:three_prime_UTR | 30.0% |
| ! | GATGAAGTTTCTTGTTTGAA+TGG | + | chr3_2:71759905-71759924 | Msa0422440:three_prime_UTR | 30.0% |
| GGTTTCAAACAAAATCGTTA+AGG | - | chr3_2:71760012-71760031 | None:intergenic | 30.0% | |
| TTTCATTTCCACCACAAACA+AGG | + | chr3_2:71757175-71757194 | Msa0422440:five_prime_UTR | 35.0% | |
| !! | TTTCTTTTCCTTGTTTGTGG+TGG | - | chr3_2:71757186-71757205 | None:intergenic | 35.0% |
| TGTCATGAAGCTTCAAATCA+AGG | + | chr3_2:71757400-71757419 | Msa0422440:CDS | 35.0% | |
| !! | CAAATCAAGGTTGATGAGAA+TGG | + | chr3_2:71757413-71757432 | Msa0422440:CDS | 35.0% |
| !!! | GTAGGTCGTTTTTCATGTAT+TGG | + | chr3_2:71757501-71757520 | Msa0422440:intron | 35.0% |
| ATGGGTAAAAGGAAAGCAAA+TGG | + | chr3_2:71757679-71757698 | Msa0422440:CDS | 35.0% | |
| CAGTACTTACGTGTTCTTAA+TGG | - | chr3_2:71757717-71757736 | None:intergenic | 35.0% | |
| CATTAAGAACACGTAAGTAC+TGG | + | chr3_2:71757715-71757734 | Msa0422440:intron | 35.0% | |
| TGCAAATTTGTGTCTTTGTC+TGG | + | chr3_2:71757759-71757778 | Msa0422440:intron | 35.0% | |
| AATGACATCCATAACAAGCA+TGG | + | chr3_2:71757888-71757907 | Msa0422440:intron | 35.0% | |
| ! | TACTGTTTCCATGCTTGTTA+TGG | - | chr3_2:71757899-71757918 | None:intergenic | 35.0% |
| TACATTTACGATAACCTCAG+GGG | - | chr3_2:71757965-71757984 | None:intergenic | 35.0% | |
| GATACATTTACGATAACCTC+AGG | - | chr3_2:71757967-71757986 | None:intergenic | 35.0% | |
| ! | TTTAGCTGGCTTAAACATGA+TGG | - | chr3_2:71758207-71758226 | None:intergenic | 35.0% |
| CAGAAAGAACAAATACCTTG+TGG | + | chr3_2:71758279-71758298 | Msa0422440:intron | 35.0% | |
| GAAAGAACAAATACCTTGTG+GGG | + | chr3_2:71758281-71758300 | Msa0422440:intron | 35.0% | |
| AGGCCATTATTCTTTGATGA+AGG | + | chr3_2:71758399-71758418 | Msa0422440:intron | 35.0% | |
| !! | ATTTTAAGAGACTTTAGGGG+AGG | + | chr3_2:71758608-71758627 | Msa0422440:intron | 35.0% |
| ATTTAAAGAGATCTCAAGGG+AGG | + | chr3_2:71758669-71758688 | Msa0422440:intron | 35.0% | |
| !! | TATGCTTAAAAAGTGTTGCG+GGG | - | chr3_2:71758747-71758766 | None:intergenic | 35.0% |
| !! | GTATGCTTAAAAAGTGTTGC+GGG | - | chr3_2:71758748-71758767 | None:intergenic | 35.0% |
| !! | GGTATGCTTAAAAAGTGTTG+CGG | - | chr3_2:71758749-71758768 | None:intergenic | 35.0% |
| !! | TTTTGTAGAAGGTGGATTTC+TGG | + | chr3_2:71758857-71758876 | Msa0422440:intron | 35.0% |
| AACATAGCAGCAAAAGATGA+TGG | - | chr3_2:71759311-71759330 | None:intergenic | 35.0% | |
| GGCATGATTCATAAACCAAA+AGG | - | chr3_2:71759394-71759413 | None:intergenic | 35.0% | |
| !! | GCTTCTATGATTGGTAGTTT+TGG | + | chr3_2:71759467-71759486 | Msa0422440:intron | 35.0% |
| TTTCATCATCATTCCAGCAA+TGG | - | chr3_2:71759690-71759709 | None:intergenic | 35.0% | |
| GACGTTATGACAATACAACA+TGG | - | chr3_2:71759808-71759827 | None:intergenic | 35.0% | |
| !! | TGTTTGAATGGTTTGTTCGT+AGG | + | chr3_2:71759917-71759936 | Msa0422440:three_prime_UTR | 35.0% |
| AGAATCCTAATCGCTGGATT+TGG | - | chr3_2:71757260-71757279 | None:intergenic | 40.0% | |
| TATCGAAGGATCCAACATTC+CGG | - | chr3_2:71757328-71757347 | None:intergenic | 40.0% | |
| CATCGGATCATTCTTATCGA+AGG | - | chr3_2:71757342-71757361 | None:intergenic | 40.0% | |
| CTTCGATAAGAATGATCCGA+TGG | + | chr3_2:71757340-71757359 | Msa0422440:CDS | 40.0% | |
| GATAAGAATGATCCGATGGT+GGG | + | chr3_2:71757344-71757363 | Msa0422440:CDS | 40.0% | |
| !!! | GATGCTCGCTTTAAGACTTT+TGG | + | chr3_2:71757446-71757465 | Msa0422440:CDS | 40.0% |
| !!! | CGCTTTAAGACTTTTGGTTG+TGG | + | chr3_2:71757452-71757471 | Msa0422440:CDS | 40.0% |
| CATGAAAAACGACCTACCAA+CGG | - | chr3_2:71757498-71757517 | None:intergenic | 40.0% | |
| ! | ATCGTTTTGCAGCTACTGAA+TGG | + | chr3_2:71757660-71757679 | Msa0422440:intron | 40.0% |
| ! | TCGTTTTGCAGCTACTGAAT+GGG | + | chr3_2:71757661-71757680 | Msa0422440:intron | 40.0% |
| GGTAAAAGGAAAGCAAATGG+AGG | + | chr3_2:71757682-71757701 | Msa0422440:CDS | 40.0% | |
| AAAAGGAAAGCAAATGGAGG+AGG | + | chr3_2:71757685-71757704 | Msa0422440:CDS | 40.0% | |
| ACTTGTGATTGGGTGAAGAA+TGG | + | chr3_2:71757845-71757864 | Msa0422440:intron | 40.0% | |
| GAAGAATGGTTATGTGCTTG+AGG | + | chr3_2:71757859-71757878 | Msa0422440:intron | 40.0% | |
| TTTGACAGTGTCAAAGGCAA+GGG | - | chr3_2:71758026-71758045 | None:intergenic | 40.0% | |
| ! | AGTTCATTGGGTATTGCCTT+TGG | + | chr3_2:71758100-71758119 | Msa0422440:intron | 40.0% |
| TGGCACCCAAATCATGTATT+TGG | - | chr3_2:71758187-71758206 | None:intergenic | 40.0% | |
| ATTGAGCATTTATCCCCACA+AGG | - | chr3_2:71758297-71758316 | None:intergenic | 40.0% | |
| ACATGAGAATAAGAGGTCTG+CGG | + | chr3_2:71758370-71758389 | Msa0422440:intron | 40.0% | |
| !! | TAAGAGGTCTGCGGTTTTAT+AGG | + | chr3_2:71758379-71758398 | Msa0422440:intron | 40.0% |
| CGGCCTTCATCAAAGAATAA+TGG | - | chr3_2:71758405-71758424 | None:intergenic | 40.0% | |
| ACAATGGCTGAAATATTGGG+TGG | + | chr3_2:71758480-71758499 | Msa0422440:intron | 40.0% | |
| TAGAGCACAGAAGAATATGG+TGG | - | chr3_2:71758800-71758819 | None:intergenic | 40.0% | |
| ACCATATTCTTCTGTGCTCT+AGG | + | chr3_2:71758799-71758818 | Msa0422440:intron | 40.0% | |
| ATGGATGGGGTTTGAAGATA+TGG | + | chr3_2:71758923-71758942 | Msa0422440:intron | 40.0% | |
| TGGATGGGGTTTGAAGATAT+GGG | + | chr3_2:71758924-71758943 | Msa0422440:intron | 40.0% | |
| ! | CTGCTATGTTTTCAACCTTC+TGG | + | chr3_2:71759321-71759340 | Msa0422440:intron | 40.0% |
| ! | TTTTCCTTCATTTCCCTTCC+AGG | + | chr3_2:71759364-71759383 | Msa0422440:intron | 40.0% |
| CAATGGAAGAAATCATGCAG+TGG | - | chr3_2:71759673-71759692 | None:intergenic | 40.0% | |
| TGCATGATTTCTTCCATTGC+TGG | + | chr3_2:71759674-71759693 | Msa0422440:exon | 40.0% | |
| ! | AATCGACTCATTAGCACCAT+TGG | - | chr3_2:71759733-71759752 | None:intergenic | 40.0% |
| ! | GACTTTTCTTGATTGGAGCT+AGG | + | chr3_2:71759779-71759798 | Msa0422440:three_prime_UTR | 40.0% |
| CGCAAAGAAACTCGTGCAAA+CGG | + | chr3_2:71757220-71757239 | Msa0422440:CDS | 45.0% | |
| ATCGAAGGATCCAACATTCC+GGG | - | chr3_2:71757327-71757346 | None:intergenic | 45.0% | |
| CGATAAGAATGATCCGATGG+TGG | + | chr3_2:71757343-71757362 | Msa0422440:CDS | 45.0% | |
| TTCATGACATCACCACAAGC+GGG | - | chr3_2:71757389-71757408 | None:intergenic | 45.0% | |
| CTTCATGACATCACCACAAG+CGG | - | chr3_2:71757390-71757409 | None:intergenic | 45.0% | |
| AACGGACGATGAAGCAATAG+CGG | - | chr3_2:71757480-71757499 | None:intergenic | 45.0% | |
| GCAGCTACTGAATGGGTAAA+AGG | + | chr3_2:71757668-71757687 | Msa0422440:intron | 45.0% | |
| ATTTACGATAACCTCAGGGG+AGG | - | chr3_2:71757962-71757981 | None:intergenic | 45.0% | |
| GTTTGACAGTGTCAAAGGCA+AGG | - | chr3_2:71758027-71758046 | None:intergenic | 45.0% | |
| GGTGGTTGAGTAGATACCTT+GGG | + | chr3_2:71758498-71758517 | Msa0422440:intron | 45.0% | |
| !! | TAAAAAGTGTTGCGGGGCAT+CGG | - | chr3_2:71758741-71758760 | None:intergenic | 45.0% |
| GCCTAGAGCACAGAAGAATA+TGG | - | chr3_2:71758803-71758822 | None:intergenic | 45.0% | |
| TTGAAGATATGGGCCCTGTT+TGG | + | chr3_2:71758934-71758953 | Msa0422440:intron | 45.0% | |
| AGTTAATCCAAACAGGCCCT+TGG | + | chr3_2:71759208-71759227 | Msa0422440:intron | 45.0% | |
| AACAAAACCAAGGGCCTGTT+TGG | - | chr3_2:71759218-71759237 | None:intergenic | 45.0% | |
| CATAAACCAAAAGGTCCTCC+TGG | - | chr3_2:71759385-71759404 | None:intergenic | 45.0% | |
| TATGAATCATGCCCGTCTGT+AGG | + | chr3_2:71759401-71759420 | Msa0422440:intron | 45.0% | |
| ATGCTGCAGTGAAGCTTAAC+TGG | - | chr3_2:71759564-71759583 | None:intergenic | 45.0% | |
| TTATGAAGCTAAGCGTGCCT+CGG | + | chr3_2:71759620-71759639 | Msa0422440:CDS | 45.0% | |
| !!! | GATTTTTTTTTTTTTTTTTA+GGG | + | chr3_2:71757543-71757562 | Msa0422440:intron | 5.0% |
| AGACGCCAAATCCAGCGATT+AGG | + | chr3_2:71757252-71757271 | Msa0422440:CDS | 50.0% | |
| CGTGGAAGAATCCTAATCGC+TGG | - | chr3_2:71757266-71757285 | None:intergenic | 50.0% | |
| TTCCACGATTCTACCACGAG+AGG | + | chr3_2:71757279-71757298 | Msa0422440:CDS | 50.0% | |
| TCCACGATTCTACCACGAGA+GGG | + | chr3_2:71757280-71757299 | Msa0422440:CDS | 50.0% | |
| TGGATCACTACGACAATCCC+CGG | + | chr3_2:71757306-71757325 | Msa0422440:CDS | 50.0% | |
| TACGACAATCCCCGGAATGT+TGG | + | chr3_2:71757314-71757333 | Msa0422440:CDS | 50.0% | |
| TCGAAGGATCCAACATTCCG+GGG | - | chr3_2:71757326-71757345 | None:intergenic | 50.0% | |
| !! | AATGATCCGATGGTGGGAAC+TGG | + | chr3_2:71757350-71757369 | Msa0422440:CDS | 50.0% |
| ACAAGACCAGTTCCCACCAT+CGG | - | chr3_2:71757359-71757378 | None:intergenic | 50.0% | |
| !! | ATGGTGGGAACTGGTCTTGT+TGG | + | chr3_2:71757359-71757378 | Msa0422440:CDS | 50.0% |
| GCTATTGCTTCATCGTCCGT+TGG | + | chr3_2:71757479-71757498 | Msa0422440:CDS | 50.0% | |
| TTGCTTCATCGTCCGTTGGT+AGG | + | chr3_2:71757483-71757502 | Msa0422440:intron | 50.0% | |
| AATTACACTCACCTCCCCTG+AGG | + | chr3_2:71757948-71757967 | Msa0422440:intron | 50.0% | |
| CGGAGGTTTGACAGTGTCAA+AGG | - | chr3_2:71758032-71758051 | None:intergenic | 50.0% | |
| GGGTGGTTGAGTAGATACCT+TGG | + | chr3_2:71758497-71758516 | Msa0422440:intron | 50.0% | |
| TCCTTCATTTCCCTTCCAGG+AGG | + | chr3_2:71759367-71759386 | Msa0422440:intron | 50.0% | |
| TCCTCCTGGAAGGGAAATGA+AGG | - | chr3_2:71759371-71759390 | None:intergenic | 50.0% | |
| ACCAAAAGGTCCTCCTGGAA+GGG | - | chr3_2:71759380-71759399 | None:intergenic | 50.0% | |
| AACCAAAAGGTCCTCCTGGA+AGG | - | chr3_2:71759381-71759400 | None:intergenic | 50.0% | |
| TGCAGTGAAGCTTAACTGGC+GGG | - | chr3_2:71759560-71759579 | None:intergenic | 50.0% | |
| CTGCAGTGAAGCTTAACTGG+CGG | - | chr3_2:71759561-71759580 | None:intergenic | 50.0% | |
| ACCCTCTCGTGGTAGAATCG+TGG | - | chr3_2:71757284-71757303 | None:intergenic | 55.0% | |
| ACGATTCTACCACGAGAGGG+TGG | + | chr3_2:71757283-71757302 | Msa0422440:CDS | 55.0% | |
| ATTCTACCACGAGAGGGTGG+TGG | + | chr3_2:71757286-71757305 | Msa0422440:CDS | 55.0% | |
| GACAGTGTCAAAGGCAAGGG+AGG | - | chr3_2:71758023-71758042 | None:intergenic | 55.0% | |
| ! | TCCCTTCCAGGAGGACCTTT+TGG | + | chr3_2:71759376-71759395 | Msa0422440:intron | 55.0% |
| ! | TCACTGCAGCATGCTTGCTG+AGG | + | chr3_2:71759572-71759591 | Msa0422440:CDS | 55.0% |
| AGTGGCAGATTTGTCTCCCG+TGG | - | chr3_2:71759655-71759674 | None:intergenic | 55.0% | |
| AGTGATCCACCACCCTCTCG+TGG | - | chr3_2:71757295-71757314 | None:intergenic | 60.0% | |
| CTTGTTGGTGCACCCGCTTG+TGG | + | chr3_2:71757374-71757393 | Msa0422440:CDS | 60.0% | |
| TAAGCGTGCCTCGGCTACTG+CGG | + | chr3_2:71759629-71759648 | Msa0422440:CDS | 60.0% | |
| TGCCTCGGCTACTGCGGCCA+CGG | + | chr3_2:71759635-71759654 | Msa0422440:CDS | 70.0% | |
| GCCTCGGCTACTGCGGCCAC+GGG | + | chr3_2:71759636-71759655 | Msa0422440:CDS | 75.0% | |
| TCCCGTGGCCGCAGTAGCCG+AGG | - | chr3_2:71759640-71759659 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 71757099 | 71760034 | 71757099 | ID=Msa0422440;Name=Msa0422440 |
| chr3_2 | mRNA | 71757099 | 71760034 | 71757099 | ID=Msa0422440-mRNA-1;Parent=Msa0422440;Name=Msa0422440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=110|1|1|1|1|1|3|354|164 |
| chr3_2 | exon | 71757099 | 71757500 | 71757099 | ID=Msa0422440-mRNA-1:exon:17529;Parent=Msa0422440-mRNA-1 |
| chr3_2 | exon | 71757672 | 71757726 | 71757672 | ID=Msa0422440-mRNA-1:exon:17530;Parent=Msa0422440-mRNA-1 |
| chr3_2 | exon | 71759533 | 71760034 | 71759533 | ID=Msa0422440-mRNA-1:exon:17531;Parent=Msa0422440-mRNA-1 |
| chr3_2 | five_prime_UTR | 71757099 | 71757208 | 71757099 | ID=Msa0422440-mRNA-1:five_prime_utr;Parent=Msa0422440-mRNA-1 |
| chr3_2 | CDS | 71757209 | 71757500 | 71757209 | ID=Msa0422440-mRNA-1:cds;Parent=Msa0422440-mRNA-1 |
| chr3_2 | CDS | 71757672 | 71757726 | 71757672 | ID=Msa0422440-mRNA-1:cds;Parent=Msa0422440-mRNA-1 |
| chr3_2 | CDS | 71759533 | 71759680 | 71759533 | ID=Msa0422440-mRNA-1:cds;Parent=Msa0422440-mRNA-1 |
| chr3_2 | three_prime_UTR | 71759681 | 71760034 | 71759681 | ID=Msa0422440-mRNA-1:three_prime_utr;Parent=Msa0422440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
