AlfalfaGEDB | Msa0423610

M. sativa cultivar zhongmu-4 / Msa0423610

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00582.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423610	XP_013461319.1	93.236	754	16	4	1	719	1	754	0.0	1421

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423610	sp\|B5X4Z9\|STU_ARATH	39.535	688	312	19	15	700	14	599	1.12e-132	408

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423610	A0A072V037	93.236	754	16	4	1	719	1	754	0.0	1421

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0423580	Msa0423610	0.873802	1.108221e-67	-8.615850e-47
Msa0423610	Msa1450410	0.806249	9.016330e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423610	MtrunA17_Chr3g0125281	93.236	754	16	4	1	719	1	754	0.0	1421
Msa0423610	MtrunA17_Chr1g0159711	69.607	737	165	13	4	719	3	701	0.0	960
Msa0423610	MtrunA17_Chr3g0130431	53.899	731	270	11	9	719	7	690	0.0	694
Msa0423610	MtrunA17_Chr4g0036981	42.877	709	333	17	13	719	6	644	1.61e-159	475
Msa0423610	MtrunA17_Chr3g0145591	45.905	464	204	10	260	719	74	494	4.12e-126	384
Msa0423610	MtrunA17_Chr4g0072221	42.679	321	170	8	337	653	33	343	4.07e-81	263
Msa0423610	MtrunA17_Chr4g0072891	39.394	363	185	6	352	708	244	577	1.35e-80	268
Msa0423610	MtrunA17_Chr4g0072891	30.120	166	107	5	14	170	8	173	7.89e-11	65.5
Msa0423610	MtrunA17_Chr3g0111431	43.343	353	180	10	359	693	167	517	3.24e-80	265
Msa0423610	MtrunA17_Chr2g0330471	44.138	290	155	5	361	647	395	680	2.19e-77	262

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423610	AT1G77280.2	56.539	757	265	13	9	719	15	753	0.0	791
Msa0423610	AT1G77280.1	56.539	757	265	13	9	719	15	753	0.0	791
Msa0423610	AT5G63940.1	50.626	719	304	9	15	719	22	703	0.0	680
Msa0423610	AT1G21590.1	50.522	766	303	15	11	719	10	756	0.0	677
Msa0423610	AT1G21590.2	49.171	724	293	14	53	719	11	716	0.0	618
Msa0423610	AT2G16750.2	39.535	688	312	19	15	700	14	599	1.14e-133	408
Msa0423610	AT2G16750.1	39.535	688	312	19	15	700	14	599	1.14e-133	408
Msa0423610	AT4G35030.7	46.102	449	200	11	257	701	22	432	2.88e-121	370
Msa0423610	AT4G35030.3	46.102	449	200	11	257	701	22	432	2.88e-121	370
Msa0423610	AT4G35030.6	46.102	449	200	11	257	701	22	432	2.88e-121	370

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Find 182 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTATTTCCCTCATC+GGG	0.435477	3_2:-73538226	Msa0423610:CDS
AAAACCCTCGCGAGTTTGGT+TGG	0.506585	3_2:-73538024	Msa0423610:CDS
AAAATTGTTGTCATATTATT+AGG	0.179157	3_2:+73536230	None:intergenic
AAACATCATATGAAGGCTTT+AGG	0.280846	3_2:+73538297	None:intergenic
AAAGCTTATGGAAGATGCAA+AGG	0.581577	3_2:+73536473	None:intergenic
AAAGGGTTTGATCGACAAAG+TGG	0.580549	3_2:-73539194	Msa0423610:intron
AAATATACTGGGCATAAAAT+GGG	0.460940	3_2:-73536058	Msa0423610:three_prime_UTR
AACTATTGTTGTTGTAGCAT+AGG	0.499068	3_2:-73540282	Msa0423610:five_prime_UTR
AAGACTAGAAGTCAATGCTT+TGG	0.508167	3_2:-73536755	Msa0423610:CDS
AAGATCGACGTCTATGCATT+TGG	0.445303	3_2:-73537539	Msa0423610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGCTACAACAACAATAGTT+AGG	+	chr3_2:73535959-73535978	None:intergenic	30.0%
ATGCAAAAAACTTGTGATGA+CGG	-	chr3_2:73536140-73536159	Msa0423610:three_prime_UTR	30.0%
GTGATGATTGATATGTGAAA+TGG	-	chr3_2:73536360-73536379	Msa0423610:three_prime_UTR	30.0%
GTTTGTGTAGAAATTGTGAA+TGG	-	chr3_2:73536383-73536402	Msa0423610:three_prime_UTR	30.0%
TAGAAATTGTGAATGGAGAT+GGG	-	chr3_2:73536390-73536409	Msa0423610:three_prime_UTR	30.0%
TTCAGATCATAGTTTAGCTA+AGG	-	chr3_2:73537187-73537206	Msa0423610:intron	30.0%
CTTGTTTATCATGATCAACA+TGG	+	chr3_2:73537532-73537551	None:intergenic	30.0%
TAGTATTTGTGATAAAGCTC+AGG	-	chr3_2:73537553-73537572	Msa0423610:CDS	30.0%
AGTATTTGTGATAAAGCTCA+GGG	-	chr3_2:73537554-73537573	Msa0423610:CDS	30.0%
AAGTATTCCAAAAGAATTGG+AGG	-	chr3_2:73537670-73537689	Msa0423610:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	73535880	73540383	73535880	ID=Msa0423610;Name=Msa0423610
chr3_2	mRNA	73535880	73540383	73535880	ID=Msa0423610-mRNA-1;Parent=Msa0423610;Name=Msa0423610-mRNA-1;_AED=0.18;_eAED=0.18;_QI=260\|0.69\|0.57\|1\|0.61\|0.5\|14\|699\|719
chr3_2	exon	73535880	73536821	73535880	ID=Msa0423610-mRNA-1:exon:18382;Parent=Msa0423610-mRNA-1
chr3_2	exon	73537230	73537379	73537230	ID=Msa0423610-mRNA-1:exon:18381;Parent=Msa0423610-mRNA-1
chr3_2	exon	73537457	73537604	73537457	ID=Msa0423610-mRNA-1:exon:18380;Parent=Msa0423610-mRNA-1
chr3_2	exon	73537721	73537800	73537721	ID=Msa0423610-mRNA-1:exon:18379;Parent=Msa0423610-mRNA-1
chr3_2	exon	73537892	73538055	73537892	ID=Msa0423610-mRNA-1:exon:18378;Parent=Msa0423610-mRNA-1
chr3_2	exon	73538150	73538398	73538150	ID=Msa0423610-mRNA-1:exon:18377;Parent=Msa0423610-mRNA-1
chr3_2	exon	73538490	73538688	73538490	ID=Msa0423610-mRNA-1:exon:18376;Parent=Msa0423610-mRNA-1
chr3_2	exon	73538713	73538889	73538713	ID=Msa0423610-mRNA-1:exon:18375;Parent=Msa0423610-mRNA-1
chr3_2	exon	73538896	73539054	73538896	ID=Msa0423610-mRNA-1:exon:18374;Parent=Msa0423610-mRNA-1
chr3_2	exon	73539115	73539212	73539115	ID=Msa0423610-mRNA-1:exon:18373;Parent=Msa0423610-mRNA-1
chr3_2	exon	73539314	73539365	73539314	ID=Msa0423610-mRNA-1:exon:18372;Parent=Msa0423610-mRNA-1
chr3_2	exon	73539381	73539566	73539381	ID=Msa0423610-mRNA-1:exon:18371;Parent=Msa0423610-mRNA-1
chr3_2	exon	73539773	73539870	73539773	ID=Msa0423610-mRNA-1:exon:18370;Parent=Msa0423610-mRNA-1
chr3_2	exon	73539967	73540383	73539967	ID=Msa0423610-mRNA-1:exon:18369;Parent=Msa0423610-mRNA-1
chr3_2	five_prime_UTR	73540124	73540383	73540124	ID=Msa0423610-mRNA-1:five_prime_utr;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73539967	73540123	73539967	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73539773	73539870	73539773	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73539381	73539566	73539381	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73539314	73539365	73539314	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73539115	73539212	73539115	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73538896	73539054	73538896	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73538713	73538889	73538713	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73538490	73538688	73538490	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73538150	73538398	73538150	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73537892	73538055	73537892	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73537721	73537800	73537721	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73537457	73537604	73537457	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73537230	73537379	73537230	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	CDS	73536579	73536821	73536579	ID=Msa0423610-mRNA-1:cds;Parent=Msa0423610-mRNA-1
chr3_2	three_prime_UTR	73535880	73536578	73535880	ID=Msa0423610-mRNA-1:three_prime_utr;Parent=Msa0423610-mRNA-1

Gene Sequence

>Msa0423610

ATGCAAAAAACTTGTGATGACGGCGGCTCCGGTGGCCGGACGGTGGTGGTGGGAGTGAAAATGGATTCACCAAGCAAAGAGCTTCTTACGTGGGCTTTGGTTAAAGTTGCTCAACCTGGTGATCTTGTTGTTGCTCTGCATGTTCTTGGGACTAATGAAATTGTGAATGGAGATGGGAAATCATCGTTGCTTTCTCTTGTTAAGGCTTTTGACTCTGTTCTTAATGTTTATGAAGGATTCTGTAATTTGAAGCAGGTGGATCTTAAGCTAAAAATTTGCCGTGGATCATCGGTGAAGAAAATTTTGGTACGAGAAGCAAATGCTTATTCTGCAACTCATGTTATTGTTGGAAGTGTTCATGGTTTTCATAGAATTCGGTCATCTAGCTCTGTAGCTAAGTATTGTGCTAAAAAGTTATCCAAAGACTGTTGTGTTCTTGCTGTTGTGTACAAGCGTGACAGCTTGGCAGCATCAACTGTTGCTGATGTACAAGGGTTTGATCGACAAAGTGGAAATGGCTTGCTTGGTTCAATTCAATTGACACATGGTTTGCTTGGTTCGATTCAATTGACCCTCAGTAAGAATACAAAAGTTTTACTGGATTCAACAGAAAATGTTACACATCAGAGTTGCTCAATTTGTGGTGCATTGCAAGACACTTCTTGCCATCAATCTGCAGAAGAGCCTTCAGAAGGATCTGAAGTCACATCTGGTGATGGTGGCAATGAGAATTCTTTGGCAATAGTGCCTACAACTGATGCGGGACAGCTTGAATTGAAACCTGGTTGGCCGCTACTTCGTCAGAAGTTTTTACCAGACCGGCAATTACCTGATAAACTGTTCACGCGCGACCAGATCTCAGTGGTCCAGTGGGCAATGAGGTTGCCGCGTAGAAATCTTTCATACCATGTTGATCATGATAAACAAGGTCAATCTGTGGCTTTAGATAGTGAAAGTGGTGCTCTTATTCCAGTAGATTCGGAAATAGGGAAAACTTATTCGTCGCCTGAATGCAATTTAAAAAGTATTCCAAAAGAATTGGAGGGACTTCATGAGAAATACTCATCAACTTGCATATTGTTTGAGTACCAAGAACTTGTATCAGCAACATCAAATTTTTTGCCTGAAAACTTGATCGGGAAAGGAGGAAGTAGTAAGGTTTACCGAGGCTGCCTTCGTGATGGCAAAGAACTTGCTGTCAAGATCCTAAAGCCTTCATATGATGTTTTGAAAGAGTTTCTTTTGGAAATAGAAATCATCACTACATTGCATCACAAAAACATTATTTCCCTCATCGGGTTTTGCTTCGAGAATGGCAATCTACTCTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATTCACGGGACTAAGAAAAACCCTCGCGAGTTTGGTTGGACACAGAGATATAAGGTTGCAACAGGTGTTGCTGAAGCTTTAGAATATCTGCATTGTAAAGATGATCATCCCGTGATTCATCGGGATGTAAAGTCATCCAACGTATTACTATCCGAAGATTTTGAACCTCAGCTCTCTGATTTTGGATTGGCTACGTGGGCATCAACTTCATCATCTCATATAACGTGCACAGATGTTGCTGGAACCTTTGGTTATATGGCCCCCGAATACTTCATGTATGGCAAAGTAAATGATAAGATCGACGTCTATGCATTTGGTGTTGTGCTTCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGTTGATTATCCAAAAGGTCAACAGAATCTTGTTATGTGGGCAAGTCCACTTATAAATAGTGGAAAGGTGTCACAATTGTTAGATCCTAACTTAGGTGATAACTATGATCATGATGAGATGGAAAGAATGGTATTAGCAGCCACTCTTTGCATCAAACGTGCTCCAAAAGCTAGGCCACCAATGAGCATTGTTTCAAAGCTACTTCAAGGCGATATTGATGCAATCAAGTGGGCAAGACTAGAAGTCAATGCTTTGGAAGCACACGAAATGCTCGATGATGAAGCATGTCCACCAAGTAATATACAGTCACATCTTAATCTTGCACTGCTTGATGTGGATGATGACTCACTCTCCATGTATAGTGTTGAGCAAAGTGTTTCATTAGAGGACTATTTGAGAGGCAGGTGGAGCCGAGCATCAAGTTTTGACTGA

Protein sequence

>Msa0423610

MQKTCDDGGSGGRTVVVGVKMDSPSKELLTWALVKVAQPGDLVVALHVLGTNEIVNGDGKSSLLSLVKAFDSVLNVYEGFCNLKQVDLKLKICRGSSVKKILVREANAYSATHVIVGSVHGFHRIRSSSSVAKYCAKKLSKDCCVLAVVYKRDSLAASTVADVQGFDRQSGNGLLGSIQLTHGLLGSIQLTLSKNTKVLLDSTENVTHQSCSICGALQDTSCHQSAEEPSEGSEVTSGDGGNENSLAIVPTTDAGQLELKPGWPLLRQKFLPDRQLPDKLFTRDQISVVQWAMRLPRRNLSYHVDHDKQGQSVALDSESGALIPVDSEIGKTYSSPECNLKSIPKELEGLHEKYSSTCILFEYQELVSATSNFLPENLIGKGGSSKVYRGCLRDGKELAVKILKPSYDVLKEFLLEIEIITTLHHKNIISLIGFCFENGNLLLVYDFLSRGSLEENIHGTKKNPREFGWTQRYKVATGVAEALEYLHCKDDHPVIHRDVKSSNVLLSEDFEPQLSDFGLATWASTSSSHITCTDVAGTFGYMAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISVDYPKGQQNLVMWASPLINSGKVSQLLDPNLGDNYDHDEMERMVLAATLCIKRAPKARPPMSIVSKLLQGDIDAIKWARLEVNALEAHEMLDDEACPPSNIQSHLNLALLDVDDDSLSMYSVEQSVSLEDYLRGRWSRASSFD*